12:29:56 Started by upstream project "Trigger" build number 482 12:29:56 originally caused by: 12:29:56 Started by user devspace 12:29:56 Restarted from build #481, stage OMERO Jars 12:29:56 Running as SYSTEM 12:29:56 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 12:29:56 The recommended git tool is: NONE 12:29:56 No credentials specified 12:29:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 12:29:56 Fetching changes from the remote Git repository 12:29:56 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 12:29:56 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 12:29:56 > git --version # timeout=10 12:29:56 > git --version # 'git version 2.43.5' 12:29:56 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 12:29:58 > git rev-parse origin/merge_ci^{commit} # timeout=10 12:29:58 Checking out Revision 3a7678947128f5fd7f4b4a8b1c552ab8bd56bd4d (origin/merge_ci) 12:29:58 > git config core.sparsecheckout # timeout=10 12:29:58 > git checkout -f 3a7678947128f5fd7f4b4a8b1c552ab8bd56bd4d # timeout=10 12:29:59 Commit message: "Add version.properties to etc/omero.properties" 12:29:59 > git rev-list --no-walk 346188c1df9697066aac4557a71e6ba3429def07 # timeout=10 12:29:59 Cleaning workspace 12:29:59 > git rev-parse --verify HEAD # timeout=10 12:29:59 Resetting working tree 12:29:59 > git reset --hard # timeout=10 12:29:59 > git clean -fdx # timeout=10 12:29:59 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 408 12:29:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins6596053180566617993.sh 12:29:59 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 12:29:59 + cd src 12:29:59 + export OMERO_BRANCH=merge_ci 12:29:59 + OMERO_BRANCH=merge_ci 12:29:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 12:29:59 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 12:30:00 + source /home/omero/settings.env 12:30:00 ++ OMERO_DB_HOST=pg 12:30:00 ++ OMERO_DB_USER=postgres 12:30:00 ++ OMERO_DB_PASS= 12:30:00 ++ OMERO_ROOT_PASS=omero 12:30:00 ++ OMERO_DATA_DIR=/OMERO 12:30:00 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 12:30:00 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 12:30:04 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 12:30:04 Collecting zeroc-ice==3.6.5 12:30:05 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 12:30:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 3.6 MB/s eta 0:00:00 12:30:09 Installing collected packages: zeroc-ice 12:30:10 Successfully installed zeroc-ice-3.6.5 12:30:10 12:30:10 [notice] A new release of pip available: 22.3.1 -> 25.1.1 12:30:10 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:30:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 12:30:10 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 12:30:11 Collecting setuptools<66 12:30:11 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 12:30:11 Collecting omero-py 12:30:11 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 12:30:11 Collecting urllib3<2 12:30:11 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 12:30:11 Collecting appdirs 12:30:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 12:30:11 Collecting future 12:30:11 Using cached future-1.0.0-py3-none-any.whl (491 kB) 12:30:12 Collecting numpy<3 12:30:12 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 12:30:13 Collecting Pillow>=10.0.0 12:30:13 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 12:30:13 Collecting PyYAML 12:30:13 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 12:30:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 12:30:13 Collecting requests 12:30:13 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 12:30:13 Collecting portalocker 12:30:13 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 12:30:14 Collecting charset-normalizer<4,>=2 12:30:14 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 12:30:17 Collecting idna<4,>=2.5 12:30:18 Using cached idna-3.10-py3-none-any.whl (70 kB) 12:30:18 Collecting certifi>=2017.4.17 12:30:18 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 12:30:18 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 12:30:19 Attempting uninstall: setuptools 12:30:19 Found existing installation: setuptools 65.5.1 12:30:19 Uninstalling setuptools-65.5.1: 12:30:19 Successfully uninstalled setuptools-65.5.1 12:30:25 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 12:30:25 12:30:25 [notice] A new release of pip available: 22.3.1 -> 25.1.1 12:30:25 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:30:25 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 12:30:25 ++ deactivate nondestructive 12:30:25 ++ '[' -n '' ']' 12:30:25 ++ '[' -n '' ']' 12:30:25 ++ hash -r 12:30:25 ++ '[' -n '' ']' 12:30:25 ++ unset VIRTUAL_ENV 12:30:25 ++ unset VIRTUAL_ENV_PROMPT 12:30:25 ++ '[' '!' nondestructive = nondestructive ']' 12:30:25 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 12:30:25 ++ export VIRTUAL_ENV 12:30:25 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:30:25 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:30:25 ++ export PATH 12:30:25 ++ '[' -n '' ']' 12:30:25 ++ '[' -z '' ']' 12:30:25 ++ _OLD_VIRTUAL_PS1= 12:30:25 ++ PS1='(omero-virtualenv) ' 12:30:25 ++ export PS1 12:30:25 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 12:30:25 ++ export VIRTUAL_ENV_PROMPT 12:30:25 ++ hash -r 12:30:25 + source docs/hudson/OMERO.sh 12:30:25 ++ set -e 12:30:25 ++ set -u 12:30:25 ++ set -x 12:30:25 ++ source docs/hudson/functions.sh 12:30:25 ++ echo Building merge_ci 12:30:25 Building merge_ci 12:30:25 ++ python3 ./build.py build-dev release-all 12:30:26 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:30:27 12:30:27 check-ivy: 12:30:27 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 12:30:27 Created dir: /home/omero/workspace/OMERO-build/src/target 12:30:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:30:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:28 12:30:28 build-scons: 12:30:28 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:30:28 No sub-builds to iterate on 12:30:28 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:30:28 12:30:28 buildlist: 12:30:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:30:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:28 12:30:28 clean: 12:30:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:30:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:30:29 12:30:29 python-clean: 12:30:29 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:30:29 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-3a76789471-ice36-b416') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:30:29 warnings.warn( 12:30:29 running clean 12:30:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 12:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:30:29 12:30:29 python-clean: 12:30:29 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:30:29 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-3a76789471-ice36-b416') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:30:29 warnings.warn( 12:30:29 running clean 12:30:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 12:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:30:30 12:30:30 python-clean: 12:30:30 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:30:30 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-3a76789471-ice36-b416') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:30:30 warnings.warn( 12:30:30 running clean 12:30:30 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 12:30:30 Deleting directory /home/omero/workspace/OMERO-build/src/target 12:30:32 12:30:32 build-scons: 12:30:32 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:30:32 12:30:32 build: 12:30:32 No sub-builds to iterate on 12:30:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:30:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:30:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:30:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:30:32 12:30:32 tools-init: 12:30:32 no-op 12:30:32 12:30:32 retrieve: 12:30:32 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:30:32 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:33 WARNING: An illegal reflective access operation has occurred 12:30:33 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 12:30:33 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 12:30:33 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 12:30:33 WARNING: All illegal access operations will be denied in a future release 12:31:12 12:31:12 prepare: 12:31:12 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:31:12 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:31:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:31:12 12:31:12 pre-compile: 12:31:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:31:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:31:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:31:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:31:12 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:31:12 12:31:12 compile: 12:31:12 no-op 12:31:12 12:31:12 package: 12:31:12 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 12:31:13 12:31:13 install: 12:31:13 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-3a76789471-ice36-b416 :: integration :: Sat May 17 12:30:32 UTC 2025 12:31:13 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 12:31:13 :: publishing :: omero#omero_client 12:31:13 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-3a76789471-ice36-b416/omero_client-5.6.3-552-3a76789471-ice36-b416.jar 12:31:13 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-3a76789471-ice36-b416/omero_client-5.6.3-552-3a76789471-ice36-b416.xml 12:31:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:31:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:31:13 12:31:13 retrieve: 12:31:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:31:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:31:14 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:31:14 12:31:14 dist: 12:31:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 12:31:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 12:31:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:31:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:31:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 12:31:14 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 12:31:14 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 12:31:14 Entering /home/omero/workspace/OMERO-build/src/components/tests... 12:31:14 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:31:14 12:31:14 copy-licenses: 12:31:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:31:14 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 12:31:14 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 12:31:15 12:31:15 copy-history: 12:31:15 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:31:15 12:31:15 copy-etc: 12:31:15 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 12:31:15 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 12:31:15 12:31:15 copy-sql: 12:31:15 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 12:31:22 12:31:22 copy-server: 12:31:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 12:31:22 12:31:22 copy-client: 12:31:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 12:31:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 12:31:24 12:31:24 update-version: 12:31:24 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 12:31:24 12:31:24 create-workdirs: 12:31:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 12:31:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 12:31:24 12:31:24 copy-luts: 12:31:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:31:24 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:31:24 12:31:24 test-compile: 12:31:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:31:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:31:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:31:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:31:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:31:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:31:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:31:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:31:25 12:31:25 testng-init: 12:31:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:31:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:31:28 12:31:28,383 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 12:31:28 12:31:28,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - No custom configurators were discovered as a service. 12:31:28 12:31:28,385 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 12:31:28 12:31:28,388 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 12:31:28 12:31:28,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 12:31:28 12:31:28,389 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 12:31:28 12:31:28,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 12:31:28 12:31:28,390 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 12:31:28 12:31:28,392 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 12:31:28 12:31:28,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 12:31:28 12:31:28,392 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:31:28 12:31:28,393 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7caf0725 - Resource [logback.xml] occurs multiple times on the classpath. 12:31:28 12:31:28,393 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7caf0725 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:31:28 12:31:28,393 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7caf0725 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 12:31:28 12:31:28,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 12:31:28 12:31:28,589 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 12:31:28 12:31:28,609 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 12:31:28 12:31:28,611 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@644acaff - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 12:31:28 12:31:28,611 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@644acaff - Please move "immediateFlush" property into the enclosing appender. 12:31:28 12:31:28,671 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@644acaff - Setting the "immediateFlush" property of the enclosing appender to true 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 12:31:28 12:31:28,672 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 12:31:28 12:31:28,673 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6241ef96 - End of configuration. 12:31:28 12:31:28,675 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5865b0f6 - Registering current configuration as safe fallback point 12:31:28 12:31:28,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@35b1e5e5 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 12:31:28 12:31:28 lifecycle.test-compile: 12:31:28 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:31:28 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:31:29 warning: [options] bootstrap class path not set in conjunction with -source 8 12:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:31 import omero.grid.RawAccessRequest; 12:31:31 ^ 12:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:31 import omero.grid.RawAccessRequest; 12:31:31 ^ 12:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:31 import omero.grid.RawAccessRequest; 12:31:31 ^ 12:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:31 import omero.model.ImportJob; 12:31:31 ^ 12:31:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:31:31 import omero.model.ImportJobI; 12:31:31 ^ 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 12:31:32 IObject link = (IObject) linkClass.newInstance(); 12:31:32 ^ 12:31:32 where T is a type-variable: 12:31:32 T extends Object declared in class Class 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 12:31:32 T copy = (T) obj.getClass().newInstance(); 12:31:32 ^ 12:31:32 where T is a type-variable: 12:31:32 T extends Object declared in class Class 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:32 RawAccessRequest raw = new RawAccessRequest(); 12:31:32 ^ 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:32 RawAccessRequest raw = new RawAccessRequest(); 12:31:32 ^ 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:31:32 raw.repoUuid = legacy.root().getHash().getValue(); 12:31:32 ^ 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 12:31:32 raw.command = "rm"; 12:31:32 ^ 12:31:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 12:31:32 raw.args = Arrays.asList(path); 12:31:32 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 12:31:33 final IObject link = linkClass.newInstance(); 12:31:33 ^ 12:31:33 where T is a type-variable: 12:31:33 T extends Object declared in class Class 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 12:31:33 originalLink.setChild(annotationClass.newInstance()); 12:31:33 ^ 12:31:33 where T is a type-variable: 12:31:33 T extends Object declared in class Class 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:31:33 RoiResult r = svc.findByImage(id, new RoiOptions()); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:33 final RawAccessRequest request = new RawAccessRequest(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:33 final RawAccessRequest request = new RawAccessRequest(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:31:33 request.repoUuid = repo.root().getHash().getValue(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 12:31:33 request.command = "exists"; 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 12:31:33 request.args = Collections.singletonList(dirPath); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:33 final RawAccessRequest request = new RawAccessRequest(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:31:33 final RawAccessRequest request = new RawAccessRequest(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:31:33 request.repoUuid = repo.root().getHash().getValue(); 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 12:31:33 request.command = "exists"; 12:31:33 ^ 12:31:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 12:31:33 request.args = Collections.singletonList(dirName); 12:31:33 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:34 final ImportJob importJob = new ImportJobI(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:31:34 final ImportJob importJob = new ImportJobI(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 12:31:34 importJob.setImageName(omero.rtypes.rstring(name)); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 12:31:34 importJob.setImageDescription(omero.rtypes.rstring(desc)); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:34 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:31:34 final String savedName = sent.getImageName().getValue().toString(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:31:34 final String savedDesc = sent.getImageDescription().getValue().toString(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:31:34 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:31:34 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:31:34 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 RoiResult r = svc.findByImage(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 12:31:34 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 12:31:34 table = svc.getTable(f.getId().getValue()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 RoiResult r = svc.findByImage(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:31:34 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:31:34 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 12:31:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 12:31:34 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:31:34 svc.getShapeStatsRestricted( 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:31:34 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:31:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:31:34 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:31:34 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:31:34 request.typesToIgnore = Collections.singletonList("Annotation"); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:31:34 request.typesToIgnore = Collections.singletonList("Annotation"); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:31:34 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:31:34 p2.setRelatedTo(p1); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:31:34 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:31:34 pixels1.setRelatedTo(pixels2); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:31:34 Pixels pixels = pixels1.getRelatedTo(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:31:34 Assert.assertNull(pixels1.getRelatedTo()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:31:34 pixels1.setRelatedTo(pixels2); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:31:34 Pixels pixels = pixels1.getRelatedTo(); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:31:34 Assert.assertNull(pixels1.getRelatedTo()); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:31:34 ^ 12:31:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:31:34 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:31:34 ^ 12:31:35 Note: Some input files use unchecked or unsafe operations. 12:31:35 Note: Recompile with -Xlint:unchecked for details. 12:31:35 88 warnings 12:31:35 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1042509722.tmp 12:31:35 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 12:31:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:31:35 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-3a76789471-ice36-b416 :: integration :: Sat May 17 12:31:25 UTC 2025 12:31:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 12:31:35 :: publishing :: omero#OmeroJava-test 12:31:35 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-3a76789471-ice36-b416.jar 12:31:35 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-3a76789471-ice36-b416.xml 12:31:35 12:31:35 build-eclipse: 12:31:35 No sub-builds to iterate on 12:31:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:31:35 12:31:35 retrieve: 12:31:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:31:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:31:39 12:31:39 prepare: 12:31:39 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:31:41 12:31:41 release-clients: 12:31:41 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-3a76789471-ice36-b416.zip 12:31:47 12:31:47 release-zip: 12:31:47 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-3a76789471-ice36-b416.zip 12:32:01 12:32:01 BUILD SUCCESSFUL 12:32:01 Total time: 1 minute 35 seconds 12:32:01 ++ '[' -d .git ']' 12:32:01 ++ python3 ./build.py release-src 12:32:01 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:32:02 12:32:02 release-src-git: 12:32:02 Releasing openmicroscopy-5.6.3-552-3a76789471-ice36-b416 12:32:04 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-3a76789471-ice36-b416.zip 12:32:04 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-3a76789471-ice36-b416-base.zip 12:32:05 12:32:05 BUILD SUCCESSFUL 12:32:05 Total time: 3 seconds 12:32:05 ++ echo BUILD_NUMBER=416 12:32:05 ++ echo OMERO_BRANCH=merge_ci 12:32:05 ++ git_info 12:32:05 +++ git rev-parse HEAD 12:32:05 ++ HEAD=3a7678947128f5fd7f4b4a8b1c552ab8bd56bd4d 12:32:05 ++ git log --max-count=1 3a7678947128f5fd7f4b4a8b1c552ab8bd56bd4d 12:32:05 ++ env 12:32:05 ++ sort 12:32:05 Archiving artifacts 12:32:34 Finished: SUCCESS