06:01:08 Started by upstream project "Trigger" build number 493 06:01:08 originally caused by: 06:01:08 Started by user devspace 06:01:08 Restarted from build #492, stage OMERO Jars 06:01:08 Running as SYSTEM 06:01:08 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 06:01:08 The recommended git tool is: NONE 06:01:08 No credentials specified 06:01:08 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 06:01:08 Fetching changes from the remote Git repository 06:01:08 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 06:01:08 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 06:01:08 > git --version # timeout=10 06:01:08 > git --version # 'git version 2.43.5' 06:01:08 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 06:01:09 > git rev-parse origin/merge_ci^{commit} # timeout=10 06:01:09 Checking out Revision 050aa06f48775d7666b579eef882c586a1a0d74e (origin/merge_ci) 06:01:09 > git config core.sparsecheckout # timeout=10 06:01:09 > git checkout -f 050aa06f48775d7666b579eef882c586a1a0d74e # timeout=10 06:01:09 Commit message: "Add version.properties to etc/omero.properties" 06:01:09 > git rev-list --no-walk 4d0fbe8529c1dc022a929405e33538c45df6ec5e # timeout=10 06:01:09 Cleaning workspace 06:01:09 > git rev-parse --verify HEAD # timeout=10 06:01:09 Resetting working tree 06:01:09 > git reset --hard # timeout=10 06:01:09 > git clean -fdx # timeout=10 06:01:09 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 416 06:01:09 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1446253550886634533.sh 06:01:09 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 06:01:09 + cd src 06:01:09 + export OMERO_BRANCH=merge_ci 06:01:09 + OMERO_BRANCH=merge_ci 06:01:09 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 06:01:09 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 06:01:09 + source /home/omero/settings.env 06:01:09 ++ OMERO_DB_HOST=pg 06:01:09 ++ OMERO_DB_USER=postgres 06:01:09 ++ OMERO_DB_PASS= 06:01:09 ++ OMERO_ROOT_PASS=omero 06:01:09 ++ OMERO_DATA_DIR=/OMERO 06:01:09 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 06:01:09 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 06:01:13 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 06:01:13 Collecting zeroc-ice==3.6.5 06:01:14 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 06:01:16 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.5 MB/s eta 0:00:00 06:01:16 Installing collected packages: zeroc-ice 06:01:17 Successfully installed zeroc-ice-3.6.5 06:01:17 06:01:17 [notice] A new release of pip available: 22.3.1 -> 25.1.1 06:01:17 [notice] To update, run: python3.11 -m pip install --upgrade pip 06:01:17 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 06:01:17 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 06:01:17 Collecting setuptools<66 06:01:17 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 06:01:17 Collecting omero-py 06:01:17 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 06:01:18 Collecting urllib3<2 06:01:18 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 06:01:18 Collecting appdirs 06:01:18 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 06:01:18 Collecting future 06:01:18 Using cached future-1.0.0-py3-none-any.whl (491 kB) 06:01:18 Collecting numpy<3 06:01:18 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) 06:01:19 Collecting Pillow>=10.0.0 06:01:19 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 06:01:19 Collecting PyYAML 06:01:19 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 06:01:19 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 06:01:19 Collecting requests 06:01:19 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 06:01:19 Collecting portalocker 06:01:19 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 06:01:19 Collecting charset-normalizer<4,>=2 06:01:19 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 06:01:19 Collecting idna<4,>=2.5 06:01:19 Using cached idna-3.10-py3-none-any.whl (70 kB) 06:01:19 Collecting certifi>=2017.4.17 06:01:19 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 06:01:19 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 06:01:19 Attempting uninstall: setuptools 06:01:19 Found existing installation: setuptools 65.5.1 06:01:19 Uninstalling setuptools-65.5.1: 06:01:19 Successfully uninstalled setuptools-65.5.1 06:01:25 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 06:01:25 06:01:25 [notice] A new release of pip available: 22.3.1 -> 25.1.1 06:01:25 [notice] To update, run: python3.11 -m pip install --upgrade pip 06:01:25 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 06:01:25 ++ deactivate nondestructive 06:01:25 ++ '[' -n '' ']' 06:01:25 ++ '[' -n '' ']' 06:01:25 ++ hash -r 06:01:25 ++ '[' -n '' ']' 06:01:25 ++ unset VIRTUAL_ENV 06:01:25 ++ unset VIRTUAL_ENV_PROMPT 06:01:25 ++ '[' '!' nondestructive = nondestructive ']' 06:01:25 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 06:01:25 ++ export VIRTUAL_ENV 06:01:25 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:01:25 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 06:01:25 ++ export PATH 06:01:25 ++ '[' -n '' ']' 06:01:25 ++ '[' -z '' ']' 06:01:25 ++ _OLD_VIRTUAL_PS1= 06:01:25 ++ PS1='(omero-virtualenv) ' 06:01:25 ++ export PS1 06:01:25 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 06:01:25 ++ export VIRTUAL_ENV_PROMPT 06:01:25 ++ hash -r 06:01:25 + source docs/hudson/OMERO.sh 06:01:25 ++ set -e 06:01:25 ++ set -u 06:01:25 ++ set -x 06:01:25 ++ source docs/hudson/functions.sh 06:01:25 ++ echo Building merge_ci 06:01:25 Building merge_ci 06:01:25 ++ python3 ./build.py build-dev release-all 06:01:25 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 06:01:26 06:01:26 check-ivy: 06:01:26 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 06:01:26 Created dir: /home/omero/workspace/OMERO-build/src/target 06:01:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:01:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:01:26 06:01:26 build-scons: 06:01:26 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 06:01:26 No sub-builds to iterate on 06:01:27 Entering /home/omero/workspace/OMERO-build/src/components/tools... 06:01:27 06:01:27 buildlist: 06:01:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:01:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:01:27 06:01:27 clean: 06:01:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:01:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:01:27 06:01:27 python-clean: 06:01:27 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:01:27 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:01:27 warnings.warn( 06:01:27 running clean 06:01:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 06:01:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:01:28 06:01:28 python-clean: 06:01:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:01:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:01:28 warnings.warn( 06:01:28 running clean 06:01:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:01:28 06:01:28 python-clean: 06:01:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 06:01:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-050aa06f48-ice36-b424') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 06:01:28 warnings.warn( 06:01:28 running clean 06:01:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 06:01:28 Deleting directory /home/omero/workspace/OMERO-build/src/target 06:01:28 06:01:28 build-scons: 06:01:28 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 06:01:28 06:01:28 build: 06:01:28 No sub-builds to iterate on 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:01:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:01:28 06:01:28 tools-init: 06:01:28 no-op 06:01:29 06:01:29 retrieve: 06:01:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:01:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:01:29 WARNING: An illegal reflective access operation has occurred 06:01:29 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 06:01:29 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 06:01:29 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 06:01:29 WARNING: All illegal access operations will be denied in a future release 06:02:08 06:02:08 prepare: 06:02:08 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:02:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 06:02:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 06:02:08 06:02:08 pre-compile: 06:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:02:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 06:02:08 06:02:08 compile: 06:02:08 no-op 06:02:08 06:02:08 package: 06:02:08 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 06:02:09 06:02:09 install: 06:02:09 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-050aa06f48-ice36-b424 :: integration :: Sun May 25 06:01:28 UTC 2025 06:02:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 06:02:09 :: publishing :: omero#omero_client 06:02:09 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-050aa06f48-ice36-b424/omero_client-5.6.3-552-050aa06f48-ice36-b424.jar 06:02:09 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-050aa06f48-ice36-b424/omero_client-5.6.3-552-050aa06f48-ice36-b424.xml 06:02:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:02:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:02:09 06:02:09 retrieve: 06:02:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:02:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:02:10 Entering /home/omero/workspace/OMERO-build/src/components/tools... 06:02:10 06:02:10 dist: 06:02:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 06:02:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 06:02:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 06:02:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 06:02:10 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 06:02:10 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 06:02:10 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 06:02:10 Entering /home/omero/workspace/OMERO-build/src/components/tests... 06:02:10 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 06:02:10 06:02:10 copy-licenses: 06:02:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 06:02:10 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 06:02:10 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 06:02:10 06:02:10 copy-history: 06:02:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 06:02:10 06:02:10 copy-etc: 06:02:10 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 06:02:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 06:02:10 06:02:10 copy-sql: 06:02:10 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 06:02:15 06:02:15 copy-server: 06:02:15 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 06:02:15 06:02:15 copy-client: 06:02:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 06:02:16 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 06:02:16 06:02:16 update-version: 06:02:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 06:02:16 06:02:16 create-workdirs: 06:02:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 06:02:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 06:02:16 06:02:16 copy-luts: 06:02:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 06:02:16 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 06:02:16 06:02:16 test-compile: 06:02:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 06:02:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:02:17 06:02:17 testng-init: 06:02:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:02:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:02:19 06:02:19,671 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 06:02:19 06:02:19,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - No custom configurators were discovered as a service. 06:02:19 06:02:19,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 06:02:19 06:02:19,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 06:02:19 06:02:19,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 06:02:19 06:02:19,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 06:02:19 06:02:19,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 06:02:19 06:02:19,679 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 06:02:19 06:02:19,680 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 06:02:19 06:02:19,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 06:02:19 06:02:19,681 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 06:02:19 06:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs multiple times on the classpath. 06:02:19 06:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 06:02:19 06:02:19,682 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@38dfbd6e - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 06:02:19 06:02:19,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 06:02:19 06:02:19,889 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 06:02:19 06:02:19,908 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 06:02:19 06:02:19,910 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 06:02:19 06:02:19,910 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - Please move "immediateFlush" property into the enclosing appender. 06:02:19 06:02:19,971 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5aa345a5 - Setting the "immediateFlush" property of the enclosing appender to true 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 06:02:19 06:02:19,972 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 06:02:19 06:02:19,974 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3330bdd1 - End of configuration. 06:02:19 06:02:19,976 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1a343d3e - Registering current configuration as safe fallback point 06:02:19 06:02:19,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@8742b32 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 296 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 06:02:19 06:02:19 lifecycle.test-compile: 06:02:19 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:02:20 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 06:02:20 warning: [options] bootstrap class path not set in conjunction with -source 8 06:02:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:21 import omero.grid.RawAccessRequest; 06:02:21 ^ 06:02:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:21 import omero.grid.RawAccessRequest; 06:02:21 ^ 06:02:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:21 import omero.grid.RawAccessRequest; 06:02:21 ^ 06:02:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:21 import omero.model.ImportJob; 06:02:21 ^ 06:02:21 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 06:02:21 import omero.model.ImportJobI; 06:02:21 ^ 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 06:02:22 IObject link = (IObject) linkClass.newInstance(); 06:02:22 ^ 06:02:22 where T is a type-variable: 06:02:22 T extends Object declared in class Class 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 06:02:22 T copy = (T) obj.getClass().newInstance(); 06:02:22 ^ 06:02:22 where T is a type-variable: 06:02:22 T extends Object declared in class Class 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:22 RawAccessRequest raw = new RawAccessRequest(); 06:02:22 ^ 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:22 RawAccessRequest raw = new RawAccessRequest(); 06:02:22 ^ 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:02:22 raw.repoUuid = legacy.root().getHash().getValue(); 06:02:22 ^ 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 06:02:22 raw.command = "rm"; 06:02:22 ^ 06:02:22 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 06:02:22 raw.args = Arrays.asList(path); 06:02:22 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 06:02:23 final IObject link = linkClass.newInstance(); 06:02:23 ^ 06:02:23 where T is a type-variable: 06:02:23 T extends Object declared in class Class 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 06:02:23 originalLink.setChild(annotationClass.newInstance()); 06:02:23 ^ 06:02:23 where T is a type-variable: 06:02:23 T extends Object declared in class Class 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:02:23 RoiResult r = svc.findByImage(id, new RoiOptions()); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:23 final RawAccessRequest request = new RawAccessRequest(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:23 final RawAccessRequest request = new RawAccessRequest(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:02:23 request.repoUuid = repo.root().getHash().getValue(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 06:02:23 request.command = "exists"; 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 06:02:23 request.args = Collections.singletonList(dirPath); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:23 final RawAccessRequest request = new RawAccessRequest(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 06:02:23 final RawAccessRequest request = new RawAccessRequest(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 06:02:23 request.repoUuid = repo.root().getHash().getValue(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 06:02:23 request.command = "exists"; 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 06:02:23 request.args = Collections.singletonList(dirName); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:23 final ImportJob importJob = new ImportJobI(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 06:02:23 final ImportJob importJob = new ImportJobI(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 06:02:23 importJob.setImageName(omero.rtypes.rstring(name)); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 06:02:23 importJob.setImageDescription(omero.rtypes.rstring(desc)); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:23 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 06:02:23 final String savedName = sent.getImageName().getValue().toString(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 06:02:23 final String savedDesc = sent.getImageDescription().getValue().toString(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 06:02:23 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 06:02:23 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 06:02:23 ^ 06:02:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 06:02:23 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 06:02:23 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 RoiResult r = svc.findByImage(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 06:02:24 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 06:02:24 table = svc.getTable(f.getId().getValue()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 RoiResult r = svc.findByImage(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 06:02:24 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 06:02:24 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 06:02:24 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 06:02:24 svc.getShapeStatsRestricted( 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 06:02:24 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:02:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:02:24 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:02:24 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:02:24 request.typesToIgnore = Collections.singletonList("Annotation"); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 06:02:24 request.typesToIgnore = Collections.singletonList("Annotation"); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:02:24 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:02:24 p2.setRelatedTo(p1); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:02:24 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:02:24 pixels1.setRelatedTo(pixels2); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:02:24 Pixels pixels = pixels1.getRelatedTo(); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:02:24 Assert.assertNull(pixels1.getRelatedTo()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 06:02:24 pixels1.setRelatedTo(pixels2); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:02:24 Pixels pixels = pixels1.getRelatedTo(); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 06:02:24 Assert.assertNull(pixels1.getRelatedTo()); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 06:02:24 ^ 06:02:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 06:02:24 l = svc.getRoiMeasurements(image.getId().getValue(), options); 06:02:24 ^ 06:02:25 Note: Some input files use unchecked or unsafe operations. 06:02:25 Note: Recompile with -Xlint:unchecked for details. 06:02:25 88 warnings 06:02:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_784975060.tmp 06:02:25 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 06:02:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:02:25 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-050aa06f48-ice36-b424 :: integration :: Sun May 25 06:02:16 UTC 2025 06:02:25 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 06:02:25 :: publishing :: omero#OmeroJava-test 06:02:25 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-050aa06f48-ice36-b424.jar 06:02:25 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-050aa06f48-ice36-b424.xml 06:02:25 06:02:25 build-eclipse: 06:02:25 No sub-builds to iterate on 06:02:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 06:02:25 06:02:25 retrieve: 06:02:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 06:02:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 06:02:27 06:02:27 prepare: 06:02:27 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 06:02:28 06:02:28 release-clients: 06:02:28 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-050aa06f48-ice36-b424.zip 06:02:34 06:02:34 release-zip: 06:02:34 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-050aa06f48-ice36-b424.zip 06:02:45 06:02:45 BUILD SUCCESSFUL 06:02:45 Total time: 1 minute 20 seconds 06:02:45 ++ '[' -d .git ']' 06:02:45 ++ python3 ./build.py release-src 06:02:46 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 06:02:46 06:02:46 release-src-git: 06:02:46 Releasing openmicroscopy-5.6.3-552-050aa06f48-ice36-b424 06:02:47 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-050aa06f48-ice36-b424.zip 06:02:47 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-050aa06f48-ice36-b424-base.zip 06:02:49 06:02:49 BUILD SUCCESSFUL 06:02:49 Total time: 3 seconds 06:02:49 ++ echo BUILD_NUMBER=424 06:02:49 ++ echo OMERO_BRANCH=merge_ci 06:02:49 ++ git_info 06:02:49 +++ git rev-parse HEAD 06:02:49 ++ HEAD=050aa06f48775d7666b579eef882c586a1a0d74e 06:02:49 ++ git log --max-count=1 050aa06f48775d7666b579eef882c586a1a0d74e 06:02:49 ++ env 06:02:49 ++ sort 06:02:49 Archiving artifacts 06:03:13 Finished: SUCCESS