00:50:44 Started by upstream project "Trigger" build number 496 00:50:44 originally caused by: 00:50:44 Started by timer 00:50:44 Running as SYSTEM 00:50:44 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:50:44 The recommended git tool is: NONE 00:50:44 No credentials specified 00:50:44 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:50:45 Fetching changes from the remote Git repository 00:50:45 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:50:45 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:50:45 > git --version # timeout=10 00:50:45 > git --version # 'git version 2.43.5' 00:50:45 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:50:52 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:50:52 Checking out Revision 5b2f02bbd9efdbe6fa17f6329a2b1e31472ef9f6 (origin/merge_ci) 00:50:52 > git config core.sparsecheckout # timeout=10 00:50:52 > git checkout -f 5b2f02bbd9efdbe6fa17f6329a2b1e31472ef9f6 # timeout=10 00:50:54 Commit message: "Add version.properties to etc/omero.properties" 00:50:54 > git rev-list --no-walk 95697a9edb599747d89f2b5e0d8ae7718c594410 # timeout=10 00:50:54 Cleaning workspace 00:50:54 > git rev-parse --verify HEAD # timeout=10 00:50:54 Resetting working tree 00:50:54 > git reset --hard # timeout=10 00:50:54 > git clean -fdx # timeout=10 00:50:55 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 419 00:50:55 [OMERO-build] $ /bin/bash -xe /tmp/jenkins12753343656921490769.sh 00:50:55 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 00:50:55 + cd src 00:50:55 + export OMERO_BRANCH=merge_ci 00:50:55 + OMERO_BRANCH=merge_ci 00:50:55 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:50:55 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:50:55 + source /home/omero/settings.env 00:50:55 ++ OMERO_DB_HOST=pg 00:50:55 ++ OMERO_DB_USER=postgres 00:50:55 ++ OMERO_DB_PASS= 00:50:55 ++ OMERO_ROOT_PASS=omero 00:50:55 ++ OMERO_DATA_DIR=/OMERO 00:50:55 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:50:55 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:50:59 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:51:00 Collecting zeroc-ice==3.6.5 00:51:00 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:51:02 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.4 MB/s eta 0:00:00 00:51:02 Installing collected packages: zeroc-ice 00:51:03 Successfully installed zeroc-ice-3.6.5 00:51:03 00:51:03 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:51:03 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:51:03 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:51:04 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:51:04 Collecting setuptools<66 00:51:04 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:51:04 Collecting omero-py 00:51:04 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 00:51:04 Collecting urllib3<2 00:51:05 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:51:05 Collecting appdirs 00:51:05 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:51:05 Collecting future 00:51:05 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:51:05 Collecting numpy<3 00:51:05 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) 00:51:06 Collecting Pillow>=10.0.0 00:51:06 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 00:51:06 Collecting PyYAML 00:51:06 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:51:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:51:06 Collecting requests 00:51:06 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 00:51:06 Collecting portalocker 00:51:07 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 00:51:07 Collecting charset-normalizer<4,>=2 00:51:07 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 00:51:07 Collecting idna<4,>=2.5 00:51:07 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:51:07 Collecting certifi>=2017.4.17 00:51:07 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 00:51:08 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 00:51:08 Attempting uninstall: setuptools 00:51:08 Found existing installation: setuptools 65.5.1 00:51:08 Uninstalling setuptools-65.5.1: 00:51:08 Successfully uninstalled setuptools-65.5.1 00:51:14 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 00:51:14 00:51:14 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:51:14 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:51:14 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:51:14 ++ deactivate nondestructive 00:51:14 ++ '[' -n '' ']' 00:51:14 ++ '[' -n '' ']' 00:51:14 ++ hash -r 00:51:14 ++ '[' -n '' ']' 00:51:14 ++ unset VIRTUAL_ENV 00:51:14 ++ unset VIRTUAL_ENV_PROMPT 00:51:14 ++ '[' '!' nondestructive = nondestructive ']' 00:51:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:51:14 ++ export VIRTUAL_ENV 00:51:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:51:14 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:51:14 ++ export PATH 00:51:14 ++ '[' -n '' ']' 00:51:14 ++ '[' -z '' ']' 00:51:14 ++ _OLD_VIRTUAL_PS1= 00:51:14 ++ PS1='(omero-virtualenv) ' 00:51:14 ++ export PS1 00:51:14 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:51:14 ++ export VIRTUAL_ENV_PROMPT 00:51:14 ++ hash -r 00:51:14 + source docs/hudson/OMERO.sh 00:51:14 ++ set -e 00:51:14 ++ set -u 00:51:14 ++ set -x 00:51:14 ++ source docs/hudson/functions.sh 00:51:14 ++ echo Building merge_ci 00:51:14 Building merge_ci 00:51:14 ++ python3 ./build.py build-dev release-all 00:51:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:51:15 00:51:15 check-ivy: 00:51:15 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:51:15 Created dir: /home/omero/workspace/OMERO-build/src/target 00:51:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:51:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:51:16 00:51:16 build-scons: 00:51:16 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:51:16 No sub-builds to iterate on 00:51:16 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:51:16 00:51:16 buildlist: 00:51:16 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:51:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:51:16 00:51:16 clean: 00:51:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:17 00:51:17 python-clean: 00:51:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:51:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-5b2f02bbd9-ice36-b427') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:51:17 warnings.warn( 00:51:17 running clean 00:51:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:51:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:51:17 00:51:17 python-clean: 00:51:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:51:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-5b2f02bbd9-ice36-b427') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:51:17 warnings.warn( 00:51:17 running clean 00:51:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:51:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:51:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:17 00:51:17 python-clean: 00:51:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:51:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-5b2f02bbd9-ice36-b427') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:51:17 warnings.warn( 00:51:17 running clean 00:51:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:51:17 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:51:18 00:51:18 build-scons: 00:51:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:51:18 00:51:18 build: 00:51:18 No sub-builds to iterate on 00:51:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:51:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:51:18 00:51:18 tools-init: 00:51:18 no-op 00:51:18 00:51:18 retrieve: 00:51:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:51:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:51:19 WARNING: An illegal reflective access operation has occurred 00:51:19 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:51:19 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:51:19 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:51:19 WARNING: All illegal access operations will be denied in a future release 00:51:47 00:51:47 prepare: 00:51:47 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:51:47 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:51:47 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:51:47 00:51:47 pre-compile: 00:51:47 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:51:47 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:51:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:51:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:51:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:51:48 00:51:48 compile: 00:51:48 no-op 00:51:48 00:51:48 package: 00:51:48 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:51:48 00:51:48 install: 00:51:48 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-5b2f02bbd9-ice36-b427 :: integration :: Wed May 28 00:51:18 UTC 2025 00:51:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:51:48 :: publishing :: omero#omero_client 00:51:48 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-5b2f02bbd9-ice36-b427/omero_client-5.6.3-552-5b2f02bbd9-ice36-b427.jar 00:51:48 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-5b2f02bbd9-ice36-b427/omero_client-5.6.3-552-5b2f02bbd9-ice36-b427.xml 00:51:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:49 00:51:49 retrieve: 00:51:49 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:51:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:51:49 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:51:49 00:51:49 dist: 00:51:49 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:51:49 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:51:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:51:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:51:49 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:51:49 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:51:49 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:51:49 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:51:49 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:51:49 00:51:49 copy-licenses: 00:51:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:51:49 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:51:49 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:51:49 00:51:49 copy-history: 00:51:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:51:49 00:51:49 copy-etc: 00:51:49 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:51:49 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:51:49 00:51:49 copy-sql: 00:51:49 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:51:54 00:51:54 copy-server: 00:51:54 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:51:54 00:51:54 copy-client: 00:51:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:51:55 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:51:56 00:51:56 update-version: 00:51:56 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:51:56 00:51:56 create-workdirs: 00:51:56 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:51:56 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:51:56 00:51:56 copy-luts: 00:51:56 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:51:56 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:51:56 00:51:56 test-compile: 00:51:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:51:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:51:56 00:51:56 testng-init: 00:51:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:51:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:52:00 00:52:00,143 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:52:00 00:52:00,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - No custom configurators were discovered as a service. 00:52:00 00:52:00,145 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:52:00 00:52:00,148 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:52:00 00:52:00,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:52:00 00:52:00,149 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:52:00 00:52:00,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:52:00 00:52:00,150 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:52:00 00:52:00,151 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:52:00 00:52:00,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:52:00 00:52:00,152 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:52:00 00:52:00,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs multiple times on the classpath. 00:52:00 00:52:00,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:52:00 00:52:00,153 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:52:00 00:52:00,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:52:00 00:52:00,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:52:00 00:52:00,364 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:52:00 00:52:00,365 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:52:00 00:52:00,365 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Please move "immediateFlush" property into the enclosing appender. 00:52:00 00:52:00,424 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Setting the "immediateFlush" property of the enclosing appender to true 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:52:00 00:52:00,425 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:52:00 00:52:00,426 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@513156fd - End of configuration. 00:52:00 00:52:00,428 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4fd43b14 - Registering current configuration as safe fallback point 00:52:00 00:52:00,428 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 277 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:52:00 00:52:00 lifecycle.test-compile: 00:52:00 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:52:00 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:52:00 warning: [options] bootstrap class path not set in conjunction with -source 8 00:52:01 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:01 import omero.grid.RawAccessRequest; 00:52:01 ^ 00:52:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:02 import omero.grid.RawAccessRequest; 00:52:02 ^ 00:52:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:02 import omero.grid.RawAccessRequest; 00:52:02 ^ 00:52:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:02 import omero.model.ImportJob; 00:52:02 ^ 00:52:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:52:02 import omero.model.ImportJobI; 00:52:02 ^ 00:52:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:52:02 IObject link = (IObject) linkClass.newInstance(); 00:52:02 ^ 00:52:02 where T is a type-variable: 00:52:02 T extends Object declared in class Class 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:52:03 T copy = (T) obj.getClass().newInstance(); 00:52:03 ^ 00:52:03 where T is a type-variable: 00:52:03 T extends Object declared in class Class 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:03 RawAccessRequest raw = new RawAccessRequest(); 00:52:03 ^ 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:03 RawAccessRequest raw = new RawAccessRequest(); 00:52:03 ^ 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:52:03 raw.repoUuid = legacy.root().getHash().getValue(); 00:52:03 ^ 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:52:03 raw.command = "rm"; 00:52:03 ^ 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:52:03 raw.args = Arrays.asList(path); 00:52:03 ^ 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:52:03 final IObject link = linkClass.newInstance(); 00:52:03 ^ 00:52:03 where T is a type-variable: 00:52:03 T extends Object declared in class Class 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:52:03 originalLink.setChild(annotationClass.newInstance()); 00:52:03 ^ 00:52:03 where T is a type-variable: 00:52:03 T extends Object declared in class Class 00:52:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:52:03 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:52:03 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:04 final RawAccessRequest request = new RawAccessRequest(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:04 final RawAccessRequest request = new RawAccessRequest(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:52:04 request.repoUuid = repo.root().getHash().getValue(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:52:04 request.command = "exists"; 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:52:04 request.args = Collections.singletonList(dirPath); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:04 final RawAccessRequest request = new RawAccessRequest(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:52:04 final RawAccessRequest request = new RawAccessRequest(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:52:04 request.repoUuid = repo.root().getHash().getValue(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:52:04 request.command = "exists"; 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:52:04 request.args = Collections.singletonList(dirName); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:04 final ImportJob importJob = new ImportJobI(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:52:04 final ImportJob importJob = new ImportJobI(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:52:04 importJob.setImageName(omero.rtypes.rstring(name)); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:52:04 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:04 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:52:04 final String savedName = sent.getImageName().getValue().toString(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:52:04 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:52:04 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:52:04 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:52:04 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 RoiResult r = svc.findByImage(image.getId().getValue(), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:52:04 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:52:04 table = svc.getTable(f.getId().getValue()); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 RoiResult r = svc.findByImage(image.getId().getValue(), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:52:04 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:52:04 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:52:04 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:52:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:52:04 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:52:04 svc.getShapeStatsRestricted( 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:52:04 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:52:04 ^ 00:52:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:52:04 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:52:04 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:52:05 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:52:05 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:52:05 request.typesToIgnore = Collections.singletonList("Annotation"); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:52:05 request.typesToIgnore = Collections.singletonList("Annotation"); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:52:05 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:52:05 p2.setRelatedTo(p1); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:52:05 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:52:05 pixels1.setRelatedTo(pixels2); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:52:05 Pixels pixels = pixels1.getRelatedTo(); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:52:05 Assert.assertNull(pixels1.getRelatedTo()); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:52:05 pixels1.setRelatedTo(pixels2); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:52:05 Pixels pixels = pixels1.getRelatedTo(); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:52:05 Assert.assertNull(pixels1.getRelatedTo()); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:05 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:05 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:52:05 ^ 00:52:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:52:05 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:52:05 ^ 00:52:05 Note: Some input files use unchecked or unsafe operations. 00:52:05 Note: Recompile with -Xlint:unchecked for details. 00:52:05 88 warnings 00:52:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1315050372.tmp 00:52:05 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:52:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:52:05 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-5b2f02bbd9-ice36-b427 :: integration :: Wed May 28 00:51:56 UTC 2025 00:52:05 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:52:05 :: publishing :: omero#OmeroJava-test 00:52:05 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-5b2f02bbd9-ice36-b427.jar 00:52:05 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-5b2f02bbd9-ice36-b427.xml 00:52:05 00:52:05 build-eclipse: 00:52:05 No sub-builds to iterate on 00:52:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:52:05 00:52:05 retrieve: 00:52:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:52:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:52:07 00:52:07 prepare: 00:52:07 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:52:08 00:52:08 release-clients: 00:52:08 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-5b2f02bbd9-ice36-b427.zip 00:52:14 00:52:14 release-zip: 00:52:14 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-5b2f02bbd9-ice36-b427.zip 00:52:25 00:52:25 BUILD SUCCESSFUL 00:52:25 Total time: 1 minute 10 seconds 00:52:25 ++ '[' -d .git ']' 00:52:25 ++ python3 ./build.py release-src 00:52:25 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:52:26 00:52:26 release-src-git: 00:52:26 Releasing openmicroscopy-5.6.3-552-5b2f02bbd9-ice36-b427 00:52:27 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-5b2f02bbd9-ice36-b427.zip 00:52:27 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-5b2f02bbd9-ice36-b427-base.zip 00:52:29 00:52:29 BUILD SUCCESSFUL 00:52:29 Total time: 3 seconds 00:52:29 ++ echo BUILD_NUMBER=427 00:52:29 ++ echo OMERO_BRANCH=merge_ci 00:52:29 ++ git_info 00:52:29 +++ git rev-parse HEAD 00:52:29 ++ HEAD=5b2f02bbd9efdbe6fa17f6329a2b1e31472ef9f6 00:52:29 ++ git log --max-count=1 5b2f02bbd9efdbe6fa17f6329a2b1e31472ef9f6 00:52:29 ++ env 00:52:29 ++ sort 00:52:29 Archiving artifacts 00:52:53 Finished: SUCCESS