10:46:16Started by upstream project "Trigger" build number 51310:46:16originally caused by:
10:46:16 Started by user devspace10:46:16Running as SYSTEM
10:46:16Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build
10:46:16The recommended git tool is: NONE
10:46:16No credentials specified
10:46:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10
10:46:16Fetching changes from the remote Git repository
10:46:16 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10
10:46:16Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git10:46:16 > git --version # timeout=10
10:46:16 > git --version # 'git version 2.43.5'
10:46:16 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30
10:46:17 > git rev-parse origin/merge_ci^{commit} # timeout=10
10:46:17Checking out Revision 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 (origin/merge_ci)
10:46:17 > git config core.sparsecheckout # timeout=10
10:46:17 > git checkout -f 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 # timeout=10
10:46:17Commit message: "Add version.properties to etc/omero.properties"
10:46:17 > git rev-list --no-walk 38ce8cc10fb2cd8fa30d91c22867ea7a360560f3 # timeout=10
10:46:17Cleaning workspace
10:46:17 > git rev-parse --verify HEAD # timeout=10
10:46:17Resetting working tree
10:46:17 > git reset --hard # timeout=10
10:46:18 > git clean -fdx # timeout=10
10:46:18Copied 6 artifacts from "OMERO-python-superbuild-build" build number 43110:46:18[OMERO-build] $ /bin/bash -xe /tmp/jenkins16896791655069475013.sh
10:46:18+ mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz .
10:46:18+ cd src
10:46:18+ export OMERO_BRANCH=merge_ci
10:46:18+ OMERO_BRANCH=merge_ci
10:46:18+ OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv
10:46:18+ rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv
10:46:18+ source /home/omero/settings.env
10:46:18++ OMERO_DB_HOST=pg
10:46:18++ OMERO_DB_USER=postgres
10:46:18++ OMERO_DB_PASS=
10:46:18++ OMERO_ROOT_PASS=omero
10:46:18++ OMERO_DATA_DIR=/OMERO
10:46:18++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
10:46:18+ python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv
10:46:22+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl10:46:22Collecting zeroc-ice==3.6.5
10:46:23 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
10:46:25 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.0 MB/s eta 0:00:00
10:46:25Installing collected packages: zeroc-ice
10:46:26Successfully installed zeroc-ice-3.6.5
10:46:2610:46:26[notice] A new release of pip available: 22.3.1 -> 25.1.1
10:46:26[notice] To update, run: python3.11 -m pip install --upgrade pip
10:46:26+ /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py
10:46:26Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1)
10:46:27Collecting setuptools<66
10:46:27 Downloading setuptools-65.7.0-py3-none-any.whl (1.2 MB)
10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 14.6 MB/s eta 0:00:00
10:46:27Collecting omero-py
10:46:27 Downloading omero_py-5.20.0-py3-none-any.whl (2.8 MB)
10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 12.6 MB/s eta 0:00:00
10:46:27Collecting urllib3<2
10:46:27 Downloading urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 144.2/144.2 kB 31.6 MB/s eta 0:00:00
10:46:27Collecting appdirs
10:46:27 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
10:46:27Collecting future
10:46:27 Downloading future-1.0.0-py3-none-any.whl (491 kB)
10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 29.0 MB/s eta 0:00:00
10:46:28Collecting numpy<3
10:46:28 Downloading numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB)
10:46:29 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 21.9 MB/s eta 0:00:00
10:46:29Collecting Pillow>=10.0.0
10:46:29 Downloading pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB)
10:46:29 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 23.3 MB/s eta 0:00:00
10:46:29Collecting PyYAML
10:46:29 Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB)
10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 26.5 MB/s eta 0:00:00
10:46:30Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5)
10:46:30Collecting requests
10:46:30 Downloading requests-2.32.4-py3-none-any.whl (64 kB)
10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 64.8/64.8 kB 20.2 MB/s eta 0:00:00
10:46:30Collecting portalocker
10:46:30 Downloading portalocker-3.1.1-py3-none-any.whl (19 kB)
10:46:30Collecting charset_normalizer<4,>=2
10:46:30 Downloading charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB)
10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.3/147.3 kB 33.3 MB/s eta 0:00:00
10:46:30Collecting idna<4,>=2.5
10:46:30 Downloading idna-3.10-py3-none-any.whl (70 kB)
10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.4/70.4 kB 18.1 MB/s eta 0:00:00
10:46:30Collecting certifi>=2017.4.17
10:46:30 Downloading certifi-2025.4.26-py3-none-any.whl (159 kB)
10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 159.6/159.6 kB 38.4 MB/s eta 0:00:00
10:46:30Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py
10:46:30 Attempting uninstall: setuptools
10:46:30 Found existing installation: setuptools 65.5.1
10:46:30 Uninstalling setuptools-65.5.1:
10:46:30 Successfully uninstalled setuptools-65.5.1
10:46:36Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20
10:46:3610:46:36[notice] A new release of pip available: 22.3.1 -> 25.1.1
10:46:36[notice] To update, run: python3.11 -m pip install --upgrade pip
10:46:36+ source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate
10:46:36++ deactivate nondestructive
10:46:36++ '[' -n '' ']'
10:46:36++ '[' -n '' ']'
10:46:36++ hash -r
10:46:36++ '[' -n '' ']'
10:46:36++ unset VIRTUAL_ENV
10:46:36++ unset VIRTUAL_ENV_PROMPT
10:46:36++ '[' '!' nondestructive = nondestructive ']'
10:46:36++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv
10:46:36++ export VIRTUAL_ENV
10:46:36++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:46:36++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
10:46:36++ export PATH
10:46:36++ '[' -n '' ']'
10:46:36++ '[' -z '' ']'
10:46:36++ _OLD_VIRTUAL_PS1=
10:46:36++ PS1='(omero-virtualenv) '
10:46:36++ export PS1
10:46:36++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) '
10:46:36++ export VIRTUAL_ENV_PROMPT
10:46:36++ hash -r
10:46:36+ source docs/hudson/OMERO.sh
10:46:36++ set -e
10:46:36++ set -u
10:46:36++ set -x
10:46:36++ source docs/hudson/functions.sh
10:46:36++ echo Building merge_ci
10:46:36Building merge_ci
10:46:36++ python3 ./build.py build-dev release-all
10:46:36Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:46:3710:46:37check-ivy:
10:46:37Creating /home/omero/workspace/OMERO-build/src/etc/local.properties
10:46:37Created dir: /home/omero/workspace/OMERO-build/src/target
10:46:37:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:46:37:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:46:3710:46:37build-scons:
10:46:37Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:46:37No sub-builds to iterate on
10:46:37Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:46:3810:46:38buildlist:
10:46:38:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:46:38:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:46:3810:46:38clean:
10:46:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:46:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:46:3810:46:38python-clean:
10:46:38WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:46:38/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:46:38 warnings.warn(
10:46:38running clean
10:46:38Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py
10:46:38Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:46:3910:46:39python-clean:
10:46:39WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:46:39/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:46:39 warnings.warn(
10:46:39running clean
10:46:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:46:3910:46:39python-clean:
10:46:39WARNING: '' not a valid package name; please use only .-separated package names in setup.py
10:46:39/home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details.
10:46:39 warnings.warn(
10:46:39running clean
10:46:39Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py
10:46:39Deleting directory /home/omero/workspace/OMERO-build/src/target
10:46:3910:46:39build-scons:
10:46:39Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons
10:46:3910:46:39build:
10:46:39No sub-builds to iterate on
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:46:39Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:46:3910:46:39tools-init:
10:46:39no-op
10:46:4010:46:40retrieve:
10:46:40:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:46:40:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:46:40WARNING: An illegal reflective access operation has occurred
10:46:40WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator
10:46:40WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator
10:46:40WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
10:46:40WARNING: All illegal access operations will be denied in a future release
10:47:0410:47:04prepare:
10:47:04Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:47:04Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources
10:47:04Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes
10:47:0410:47:04pre-compile:
10:47:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:47:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:47:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:47:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:47:04Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes
10:47:0410:47:04compile:
10:47:04no-op
10:47:0410:47:04package:
10:47:04Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar
10:47:0510:47:05install:
10:47:05:: delivering :: omero#omero_client;working@cf2e55bb86e5 :: 5.6.3-564-4bf6e22e64-ice36-b438 :: integration :: Tue Jun 10 10:46:39 UTC 2025
10:47:05 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml
10:47:05:: publishing :: omero#omero_client
10:47:05 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-4bf6e22e64-ice36-b438/omero_client-5.6.3-564-4bf6e22e64-ice36-b438.jar
10:47:05 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-4bf6e22e64-ice36-b438/omero_client-5.6.3-564-4bf6e22e64-ice36-b438.xml
10:47:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:47:05Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:47:0510:47:05retrieve:
10:47:05:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:47:05:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:47:06Entering /home/omero/workspace/OMERO-build/src/components/tools...
10:47:0610:47:06dist:
10:47:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF
10:47:06Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server
10:47:06Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:47:06Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts
10:47:06Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts
10:47:06Copying 29 files to /home/omero/workspace/OMERO-build/src/dist
10:47:06Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist
10:47:06Entering /home/omero/workspace/OMERO-build/src/components/tests...
10:47:06Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:47:0610:47:06copy-licenses:
10:47:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:47:06Created dir: /home/omero/workspace/OMERO-build/src/dist/share
10:47:06Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share
10:47:0610:47:06copy-history:
10:47:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist
10:47:0610:47:06copy-etc:
10:47:06Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc
10:47:06Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates
10:47:0610:47:06copy-sql:
10:47:06Copying 60 files to /home/omero/workspace/OMERO-build/src/dist
10:47:1110:47:11copy-server:
10:47:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won
10:47:1110:47:11copy-client:
10:47:11Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client
10:47:12 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won
10:47:1210:47:12update-version:
10:47:12Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc
10:47:1210:47:12create-workdirs:
10:47:12Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid
10:47:12Created dir: /home/omero/workspace/OMERO-build/src/dist/var
10:47:1210:47:12copy-luts:
10:47:12Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:47:12Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts
10:47:1210:47:12test-compile:
10:47:12:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tests/ui...
10:47:12Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:47:1310:47:13testng-init:
10:47:13:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:47:13:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:47:1510:47:15,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
10:47:1510:47:15,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service.
10:47:1510:47:15,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
10:47:1510:47:15,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
10:47:1510:47:15,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
10:47:1510:47:15,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
10:47:1510:47:15,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
10:47:1510:47:15,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
10:47:1510:47:15,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
10:47:1510:47:15,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
10:47:1510:47:15,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:47:1510:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath.
10:47:1510:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml]
10:47:1510:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml]
10:47:1510:47:15,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr]
10:47:1510:47:15,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
10:47:1510:47:15,914 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property
10:47:1510:47:15,915 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender.
10:47:1510:47:15,915 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender.
10:47:1510:47:15,976 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true
10:47:1510:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR
10:47:1510:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR
10:47:1510:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR
10:47:1510:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR
10:47:1510:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN
10:47:1510:47:15,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT]
10:47:1510:47:15,979 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration.
10:47:1510:47:15,981 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point
10:47:1510:47:15,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
10:47:1510:47:15lifecycle.test-compile:
10:47:15Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:47:16Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes
10:47:16warning: [options] bootstrap class path not set in conjunction with -source 8
10:47:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:17import omero.grid.RawAccessRequest;
10:47:17 ^
10:47:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:17import omero.grid.RawAccessRequest;
10:47:17 ^
10:47:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:17import omero.grid.RawAccessRequest;
10:47:17 ^
10:47:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:17import omero.model.ImportJob;
10:47:17 ^
10:47:17/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:47:17import omero.model.ImportJobI;
10:47:17 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated
10:47:18 IObject link = (IObject) linkClass.newInstance();
10:47:18 ^
10:47:18 where T is a type-variable:
10:47:18 T extends Object declared in class Class
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated
10:47:18 T copy = (T) obj.getClass().newInstance();
10:47:18 ^
10:47:18 where T is a type-variable:
10:47:18 T extends Object declared in class Class
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:18 RawAccessRequest raw = new RawAccessRequest();
10:47:18 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:18 RawAccessRequest raw = new RawAccessRequest();
10:47:18 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:47:18 raw.repoUuid = legacy.root().getHash().getValue();
10:47:18 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated
10:47:18 raw.command = "rm";
10:47:18 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated
10:47:18 raw.args = Arrays.asList(path);
10:47:18 ^
10:47:18/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated
10:47:18 final IObject link = linkClass.newInstance();
10:47:18 ^
10:47:18 where T is a type-variable:
10:47:18 T extends Object declared in class Class
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated
10:47:19 originalLink.setChild(annotationClass.newInstance());
10:47:19 ^
10:47:19 where T is a type-variable:
10:47:19 T extends Object declared in class Class
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:47:19 RoiResult r = svc.findByImage(id, new RoiOptions());
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:19 final RawAccessRequest request = new RawAccessRequest();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:19 final RawAccessRequest request = new RawAccessRequest();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:47:19 request.repoUuid = repo.root().getHash().getValue();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated
10:47:19 request.command = "exists";
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated
10:47:19 request.args = Collections.singletonList(dirPath);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:19 final RawAccessRequest request = new RawAccessRequest();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated
10:47:19 final RawAccessRequest request = new RawAccessRequest();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated
10:47:19 request.repoUuid = repo.root().getHash().getValue();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated
10:47:19 request.command = "exists";
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated
10:47:19 request.args = Collections.singletonList(dirName);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:19 final ImportJob importJob = new ImportJobI();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated
10:47:19 final ImportJob importJob = new ImportJobI();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated
10:47:19 importJob.setImageName(omero.rtypes.rstring(name));
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated
10:47:19 importJob.setImageDescription(omero.rtypes.rstring(desc));
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:47:19 final String savedName = sent.getImageName().getValue().toString();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:47:19 final String savedDesc = sent.getImageDescription().getValue().toString();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated
10:47:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id);
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated
10:47:19 final String retrievedName = retrievedImportJob.getImageName().getValue().toString();
10:47:19 ^
10:47:19/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated
10:47:19 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString();
10:47:19 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 RoiResult r = svc.findByImage(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated
10:47:20 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId()
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated
10:47:20 table = svc.getTable(f.getId().getValue());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 RoiResult r = svc.findByImage(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:47:20 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated
10:47:20 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"});
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated
10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null,
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated
10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {},
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:47:20 svc.getShapeStatsRestricted(
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated
10:47:20 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0});
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:47:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:47:20 request.typesToIgnore = Collections.singletonList("TagAnnotation");
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:47:20 request.typesToIgnore = Collections.singletonList("IAnnotationLink");
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:47:20 request.typesToIgnore = Collections.singletonList("Annotation");
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated
10:47:20 request.typesToIgnore = Collections.singletonList("Annotation");
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:47:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:47:20 p2.setRelatedTo(p1);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:47:20 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:47:20 pixels1.setRelatedTo(pixels2);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:47:20 Pixels pixels = pixels1.getRelatedTo();
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:47:20 Assert.assertNull(pixels1.getRelatedTo());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated
10:47:20 pixels1.setRelatedTo(pixels2);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:47:20 Pixels pixels = pixels1.getRelatedTo();
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated
10:47:20 Assert.assertNull(pixels1.getRelatedTo());
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(),
10:47:20 ^
10:47:20/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated
10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options);
10:47:20 ^
10:47:20Note: Some input files use unchecked or unsafe operations.
10:47:20Note: Recompile with -Xlint:unchecked for details.
10:47:2088 warnings
10:47:20Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_926213592.tmp
10:47:20Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar
10:47:20:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:47:20:: delivering :: omero#OmeroJava-test;working@cf2e55bb86e5 :: 5.6.3-564-4bf6e22e64-ice36-b438 :: integration :: Tue Jun 10 10:47:12 UTC 2025
10:47:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml
10:47:20:: publishing :: omero#OmeroJava-test
10:47:20 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-4bf6e22e64-ice36-b438.jar
10:47:20 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-4bf6e22e64-ice36-b438.xml
10:47:2010:47:20build-eclipse:
10:47:20No sub-builds to iterate on
10:47:20Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava...
10:47:2110:47:21retrieve:
10:47:21:: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ ::
10:47:21:: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml
10:47:2310:47:23prepare:
10:47:23Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs
10:47:2610:47:26release-clients:
10:47:26Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-564-4bf6e22e64-ice36-b438.zip
10:47:3210:47:32release-zip:
10:47:32Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-564-4bf6e22e64-ice36-b438.zip
10:47:4310:47:43BUILD SUCCESSFUL
10:47:43Total time: 1 minute 6 seconds
10:47:43++ '[' -d .git ']'
10:47:43++ python3 ./build.py release-src
10:47:43Buildfile: /home/omero/workspace/OMERO-build/src/build.xml
10:47:4310:47:43release-src-git:
10:47:43Releasing openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438
10:47:45 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438.zip
10:47:45 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438-base.zip
10:47:4610:47:46BUILD SUCCESSFUL
10:47:46Total time: 3 seconds
10:47:46++ echo BUILD_NUMBER=438
10:47:46++ echo OMERO_BRANCH=merge_ci
10:47:46++ git_info
10:47:46+++ git rev-parse HEAD
10:47:46++ HEAD=4bf6e22e64b17f5ad030844b5574b5061a5e3b91
10:47:46++ git log --max-count=1 4bf6e22e64b17f5ad030844b5574b5061a5e3b91
10:47:46++ env
10:47:46++ sort
10:47:46Archiving artifacts
10:48:11Finished: SUCCESS
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