10:46:16 Started by upstream project "Trigger" build number 513 10:46:16 originally caused by: 10:46:16 Started by user devspace 10:46:16 Running as SYSTEM 10:46:16 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 10:46:16 The recommended git tool is: NONE 10:46:16 No credentials specified 10:46:16 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 10:46:16 Fetching changes from the remote Git repository 10:46:16 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 10:46:16 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 10:46:16 > git --version # timeout=10 10:46:16 > git --version # 'git version 2.43.5' 10:46:16 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 10:46:17 > git rev-parse origin/merge_ci^{commit} # timeout=10 10:46:17 Checking out Revision 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 (origin/merge_ci) 10:46:17 > git config core.sparsecheckout # timeout=10 10:46:17 > git checkout -f 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 # timeout=10 10:46:17 Commit message: "Add version.properties to etc/omero.properties" 10:46:17 > git rev-list --no-walk 38ce8cc10fb2cd8fa30d91c22867ea7a360560f3 # timeout=10 10:46:17 Cleaning workspace 10:46:17 > git rev-parse --verify HEAD # timeout=10 10:46:17 Resetting working tree 10:46:17 > git reset --hard # timeout=10 10:46:18 > git clean -fdx # timeout=10 10:46:18 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 431 10:46:18 [OMERO-build] $ /bin/bash -xe /tmp/jenkins16896791655069475013.sh 10:46:18 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 10:46:18 + cd src 10:46:18 + export OMERO_BRANCH=merge_ci 10:46:18 + OMERO_BRANCH=merge_ci 10:46:18 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 10:46:18 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 10:46:18 + source /home/omero/settings.env 10:46:18 ++ OMERO_DB_HOST=pg 10:46:18 ++ OMERO_DB_USER=postgres 10:46:18 ++ OMERO_DB_PASS= 10:46:18 ++ OMERO_ROOT_PASS=omero 10:46:18 ++ OMERO_DATA_DIR=/OMERO 10:46:18 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:46:18 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 10:46:22 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 10:46:22 Collecting zeroc-ice==3.6.5 10:46:23 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 10:46:25 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.0 MB/s eta 0:00:00 10:46:25 Installing collected packages: zeroc-ice 10:46:26 Successfully installed zeroc-ice-3.6.5 10:46:26 10:46:26 [notice] A new release of pip available: 22.3.1 -> 25.1.1 10:46:26 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:46:26 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 10:46:26 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 10:46:27 Collecting setuptools<66 10:46:27 Downloading setuptools-65.7.0-py3-none-any.whl (1.2 MB) 10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 14.6 MB/s eta 0:00:00 10:46:27 Collecting omero-py 10:46:27 Downloading omero_py-5.20.0-py3-none-any.whl (2.8 MB) 10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 12.6 MB/s eta 0:00:00 10:46:27 Collecting urllib3<2 10:46:27 Downloading urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 144.2/144.2 kB 31.6 MB/s eta 0:00:00 10:46:27 Collecting appdirs 10:46:27 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:46:27 Collecting future 10:46:27 Downloading future-1.0.0-py3-none-any.whl (491 kB) 10:46:27 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 29.0 MB/s eta 0:00:00 10:46:28 Collecting numpy<3 10:46:28 Downloading numpy-2.3.0-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) 10:46:29 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 21.9 MB/s eta 0:00:00 10:46:29 Collecting Pillow>=10.0.0 10:46:29 Downloading pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 10:46:29 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.6/4.6 MB 23.3 MB/s eta 0:00:00 10:46:29 Collecting PyYAML 10:46:29 Downloading PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 763.0/763.0 kB 26.5 MB/s eta 0:00:00 10:46:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 10:46:30 Collecting requests 10:46:30 Downloading requests-2.32.4-py3-none-any.whl (64 kB) 10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 64.8/64.8 kB 20.2 MB/s eta 0:00:00 10:46:30 Collecting portalocker 10:46:30 Downloading portalocker-3.1.1-py3-none-any.whl (19 kB) 10:46:30 Collecting charset_normalizer<4,>=2 10:46:30 Downloading charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.3/147.3 kB 33.3 MB/s eta 0:00:00 10:46:30 Collecting idna<4,>=2.5 10:46:30 Downloading idna-3.10-py3-none-any.whl (70 kB) 10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 70.4/70.4 kB 18.1 MB/s eta 0:00:00 10:46:30 Collecting certifi>=2017.4.17 10:46:30 Downloading certifi-2025.4.26-py3-none-any.whl (159 kB) 10:46:30 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 159.6/159.6 kB 38.4 MB/s eta 0:00:00 10:46:30 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 10:46:30 Attempting uninstall: setuptools 10:46:30 Found existing installation: setuptools 65.5.1 10:46:30 Uninstalling setuptools-65.5.1: 10:46:30 Successfully uninstalled setuptools-65.5.1 10:46:36 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.0 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 10:46:36 10:46:36 [notice] A new release of pip available: 22.3.1 -> 25.1.1 10:46:36 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:46:36 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 10:46:36 ++ deactivate nondestructive 10:46:36 ++ '[' -n '' ']' 10:46:36 ++ '[' -n '' ']' 10:46:36 ++ hash -r 10:46:36 ++ '[' -n '' ']' 10:46:36 ++ unset VIRTUAL_ENV 10:46:36 ++ unset VIRTUAL_ENV_PROMPT 10:46:36 ++ '[' '!' nondestructive = nondestructive ']' 10:46:36 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 10:46:36 ++ export VIRTUAL_ENV 10:46:36 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:46:36 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:46:36 ++ export PATH 10:46:36 ++ '[' -n '' ']' 10:46:36 ++ '[' -z '' ']' 10:46:36 ++ _OLD_VIRTUAL_PS1= 10:46:36 ++ PS1='(omero-virtualenv) ' 10:46:36 ++ export PS1 10:46:36 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 10:46:36 ++ export VIRTUAL_ENV_PROMPT 10:46:36 ++ hash -r 10:46:36 + source docs/hudson/OMERO.sh 10:46:36 ++ set -e 10:46:36 ++ set -u 10:46:36 ++ set -x 10:46:36 ++ source docs/hudson/functions.sh 10:46:36 ++ echo Building merge_ci 10:46:36 Building merge_ci 10:46:36 ++ python3 ./build.py build-dev release-all 10:46:36 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:46:37 10:46:37 check-ivy: 10:46:37 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 10:46:37 Created dir: /home/omero/workspace/OMERO-build/src/target 10:46:37 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:46:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:46:37 10:46:37 build-scons: 10:46:37 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:46:37 No sub-builds to iterate on 10:46:37 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:46:38 10:46:38 buildlist: 10:46:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:46:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:46:38 10:46:38 clean: 10:46:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:46:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:46:38 10:46:38 python-clean: 10:46:38 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:46:38 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:46:38 warnings.warn( 10:46:38 running clean 10:46:38 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 10:46:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:46:39 10:46:39 python-clean: 10:46:39 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:46:39 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:46:39 warnings.warn( 10:46:39 running clean 10:46:39 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:46:39 10:46:39 python-clean: 10:46:39 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:46:39 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-564-4bf6e22e64-ice36-b438') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:46:39 warnings.warn( 10:46:39 running clean 10:46:39 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 10:46:39 Deleting directory /home/omero/workspace/OMERO-build/src/target 10:46:39 10:46:39 build-scons: 10:46:39 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:46:39 10:46:39 build: 10:46:39 No sub-builds to iterate on 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:46:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:46:39 10:46:39 tools-init: 10:46:39 no-op 10:46:40 10:46:40 retrieve: 10:46:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:46:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:46:40 WARNING: An illegal reflective access operation has occurred 10:46:40 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 10:46:40 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 10:46:40 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 10:46:40 WARNING: All illegal access operations will be denied in a future release 10:47:04 10:47:04 prepare: 10:47:04 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:47:04 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:47:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:47:04 10:47:04 pre-compile: 10:47:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:47:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:47:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:47:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:47:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:47:04 10:47:04 compile: 10:47:04 no-op 10:47:04 10:47:04 package: 10:47:04 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 10:47:05 10:47:05 install: 10:47:05 :: delivering :: omero#omero_client;working@cf2e55bb86e5 :: 5.6.3-564-4bf6e22e64-ice36-b438 :: integration :: Tue Jun 10 10:46:39 UTC 2025 10:47:05 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 10:47:05 :: publishing :: omero#omero_client 10:47:05 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-4bf6e22e64-ice36-b438/omero_client-5.6.3-564-4bf6e22e64-ice36-b438.jar 10:47:05 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-564-4bf6e22e64-ice36-b438/omero_client-5.6.3-564-4bf6e22e64-ice36-b438.xml 10:47:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:47:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:47:05 10:47:05 retrieve: 10:47:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:47:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:47:06 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:47:06 10:47:06 dist: 10:47:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 10:47:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 10:47:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:47:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:47:06 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 10:47:06 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 10:47:06 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 10:47:06 Entering /home/omero/workspace/OMERO-build/src/components/tests... 10:47:06 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:47:06 10:47:06 copy-licenses: 10:47:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:47:06 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 10:47:06 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 10:47:06 10:47:06 copy-history: 10:47:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:47:06 10:47:06 copy-etc: 10:47:06 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 10:47:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 10:47:06 10:47:06 copy-sql: 10:47:06 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 10:47:11 10:47:11 copy-server: 10:47:11 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 10:47:11 10:47:11 copy-client: 10:47:11 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 10:47:12 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 10:47:12 10:47:12 update-version: 10:47:12 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 10:47:12 10:47:12 create-workdirs: 10:47:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 10:47:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 10:47:12 10:47:12 copy-luts: 10:47:12 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:47:12 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:47:12 10:47:12 test-compile: 10:47:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:47:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:47:13 10:47:13 testng-init: 10:47:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:47:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:47:15 10:47:15,685 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 10:47:15 10:47:15,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service. 10:47:15 10:47:15,688 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 10:47:15 10:47:15,691 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 10:47:15 10:47:15,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 10:47:15 10:47:15,692 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 10:47:15 10:47:15,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 10:47:15 10:47:15,693 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 10:47:15 10:47:15,694 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 10:47:15 10:47:15,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 10:47:15 10:47:15,695 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:47:15 10:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath. 10:47:15 10:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:47:15 10:47:15,696 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 10:47:15 10:47:15,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 10:47:15 10:47:15,894 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 10:47:15 10:47:15,914 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 10:47:15 10:47:15,915 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 10:47:15 10:47:15,915 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender. 10:47:15 10:47:15,976 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 10:47:15 10:47:15,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 10:47:15 10:47:15,979 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration. 10:47:15 10:47:15,981 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point 10:47:15 10:47:15,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 287 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 10:47:15 10:47:15 lifecycle.test-compile: 10:47:15 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:47:16 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:47:16 warning: [options] bootstrap class path not set in conjunction with -source 8 10:47:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:17 import omero.grid.RawAccessRequest; 10:47:17 ^ 10:47:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:17 import omero.grid.RawAccessRequest; 10:47:17 ^ 10:47:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:17 import omero.grid.RawAccessRequest; 10:47:17 ^ 10:47:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:17 import omero.model.ImportJob; 10:47:17 ^ 10:47:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:47:17 import omero.model.ImportJobI; 10:47:17 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 10:47:18 IObject link = (IObject) linkClass.newInstance(); 10:47:18 ^ 10:47:18 where T is a type-variable: 10:47:18 T extends Object declared in class Class 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 10:47:18 T copy = (T) obj.getClass().newInstance(); 10:47:18 ^ 10:47:18 where T is a type-variable: 10:47:18 T extends Object declared in class Class 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:18 RawAccessRequest raw = new RawAccessRequest(); 10:47:18 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:18 RawAccessRequest raw = new RawAccessRequest(); 10:47:18 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:47:18 raw.repoUuid = legacy.root().getHash().getValue(); 10:47:18 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 10:47:18 raw.command = "rm"; 10:47:18 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 10:47:18 raw.args = Arrays.asList(path); 10:47:18 ^ 10:47:18 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 10:47:18 final IObject link = linkClass.newInstance(); 10:47:18 ^ 10:47:18 where T is a type-variable: 10:47:18 T extends Object declared in class Class 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 10:47:19 originalLink.setChild(annotationClass.newInstance()); 10:47:19 ^ 10:47:19 where T is a type-variable: 10:47:19 T extends Object declared in class Class 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:47:19 RoiResult r = svc.findByImage(id, new RoiOptions()); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:19 final RawAccessRequest request = new RawAccessRequest(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:19 final RawAccessRequest request = new RawAccessRequest(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:47:19 request.repoUuid = repo.root().getHash().getValue(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 10:47:19 request.command = "exists"; 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 10:47:19 request.args = Collections.singletonList(dirPath); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:19 final RawAccessRequest request = new RawAccessRequest(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:47:19 final RawAccessRequest request = new RawAccessRequest(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:47:19 request.repoUuid = repo.root().getHash().getValue(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 10:47:19 request.command = "exists"; 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 10:47:19 request.args = Collections.singletonList(dirName); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:19 final ImportJob importJob = new ImportJobI(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:47:19 final ImportJob importJob = new ImportJobI(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 10:47:19 importJob.setImageName(omero.rtypes.rstring(name)); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 10:47:19 importJob.setImageDescription(omero.rtypes.rstring(desc)); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:19 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:47:19 final String savedName = sent.getImageName().getValue().toString(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:47:19 final String savedDesc = sent.getImageDescription().getValue().toString(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:47:19 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:47:19 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 10:47:19 ^ 10:47:19 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:47:19 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 10:47:19 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 RoiResult r = svc.findByImage(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 10:47:20 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 10:47:20 table = svc.getTable(f.getId().getValue()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 RoiResult r = svc.findByImage(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:47:20 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:47:20 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:47:20 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:47:20 svc.getShapeStatsRestricted( 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:47:20 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:47:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:47:20 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:47:20 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:47:20 request.typesToIgnore = Collections.singletonList("Annotation"); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:47:20 request.typesToIgnore = Collections.singletonList("Annotation"); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:47:20 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:47:20 p2.setRelatedTo(p1); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:47:20 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:47:20 pixels1.setRelatedTo(pixels2); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:47:20 Pixels pixels = pixels1.getRelatedTo(); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:47:20 Assert.assertNull(pixels1.getRelatedTo()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:47:20 pixels1.setRelatedTo(pixels2); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:47:20 Pixels pixels = pixels1.getRelatedTo(); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:47:20 Assert.assertNull(pixels1.getRelatedTo()); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:47:20 ^ 10:47:20 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:47:20 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:47:20 ^ 10:47:20 Note: Some input files use unchecked or unsafe operations. 10:47:20 Note: Recompile with -Xlint:unchecked for details. 10:47:20 88 warnings 10:47:20 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_926213592.tmp 10:47:20 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 10:47:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:47:20 :: delivering :: omero#OmeroJava-test;working@cf2e55bb86e5 :: 5.6.3-564-4bf6e22e64-ice36-b438 :: integration :: Tue Jun 10 10:47:12 UTC 2025 10:47:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 10:47:20 :: publishing :: omero#OmeroJava-test 10:47:20 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-4bf6e22e64-ice36-b438.jar 10:47:20 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-564-4bf6e22e64-ice36-b438.xml 10:47:20 10:47:20 build-eclipse: 10:47:20 No sub-builds to iterate on 10:47:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:47:21 10:47:21 retrieve: 10:47:21 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:47:21 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:47:23 10:47:23 prepare: 10:47:23 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:47:26 10:47:26 release-clients: 10:47:26 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-564-4bf6e22e64-ice36-b438.zip 10:47:32 10:47:32 release-zip: 10:47:32 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-564-4bf6e22e64-ice36-b438.zip 10:47:43 10:47:43 BUILD SUCCESSFUL 10:47:43 Total time: 1 minute 6 seconds 10:47:43 ++ '[' -d .git ']' 10:47:43 ++ python3 ./build.py release-src 10:47:43 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:47:43 10:47:43 release-src-git: 10:47:43 Releasing openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438 10:47:45 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438.zip 10:47:45 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-564-4bf6e22e64-ice36-b438-base.zip 10:47:46 10:47:46 BUILD SUCCESSFUL 10:47:46 Total time: 3 seconds 10:47:46 ++ echo BUILD_NUMBER=438 10:47:46 ++ echo OMERO_BRANCH=merge_ci 10:47:46 ++ git_info 10:47:46 +++ git rev-parse HEAD 10:47:46 ++ HEAD=4bf6e22e64b17f5ad030844b5574b5061a5e3b91 10:47:46 ++ git log --max-count=1 4bf6e22e64b17f5ad030844b5574b5061a5e3b91 10:47:46 ++ env 10:47:46 ++ sort 10:47:46 Archiving artifacts 10:48:11 Finished: SUCCESS