09:20:53 Started by upstream project "Trigger" build number 536 09:20:53 originally caused by: 09:20:53 Started by user devspace 09:20:53 Running as SYSTEM 09:20:53 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 09:20:53 The recommended git tool is: NONE 09:20:53 No credentials specified 09:20:53 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 09:20:53 Fetching changes from the remote Git repository 09:20:53 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 09:20:53 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 09:20:53 > git --version # timeout=10 09:20:53 > git --version # 'git version 2.43.5' 09:20:53 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:20:59 > git rev-parse origin/merge_ci^{commit} # timeout=10 09:20:59 Checking out Revision 4523d266feca187cbb47b1e00cc14d97bef8c79d (origin/merge_ci) 09:20:59 > git config core.sparsecheckout # timeout=10 09:20:59 > git checkout -f 4523d266feca187cbb47b1e00cc14d97bef8c79d # timeout=10 09:21:01 Commit message: "Add version.properties to etc/omero.properties" 09:21:01 > git rev-list --no-walk a43ec3615d37db7e98e8fb785a4a9f6288fea66e # timeout=10 09:21:01 Cleaning workspace 09:21:01 > git rev-parse --verify HEAD # timeout=10 09:21:01 Resetting working tree 09:21:01 > git reset --hard # timeout=10 09:21:01 > git clean -fdx # timeout=10 09:21:02 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 444 09:21:02 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4374456069317686312.sh 09:21:02 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 09:21:02 + cd src 09:21:02 + export OMERO_BRANCH=merge_ci 09:21:02 + OMERO_BRANCH=merge_ci 09:21:02 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 09:21:02 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 09:21:02 + source /home/omero/settings.env 09:21:02 ++ OMERO_DB_HOST=pg 09:21:02 ++ OMERO_DB_USER=postgres 09:21:02 ++ OMERO_DB_PASS= 09:21:02 ++ OMERO_ROOT_PASS=omero 09:21:02 ++ OMERO_DATA_DIR=/OMERO 09:21:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:21:02 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 09:21:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 09:21:06 Collecting zeroc-ice==3.6.5 09:21:07 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 09:21:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.1 MB/s eta 0:00:00 09:21:09 Installing collected packages: zeroc-ice 09:21:10 Successfully installed zeroc-ice-3.6.5 09:21:10 09:21:10 [notice] A new release of pip available: 22.3.1 -> 25.1.1 09:21:10 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:21:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 09:21:10 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 09:21:11 Collecting setuptools<66 09:21:11 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 09:21:11 Collecting omero-py 09:21:11 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 09:21:11 Collecting urllib3<2 09:21:11 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 09:21:11 Collecting appdirs 09:21:11 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 09:21:11 Collecting future 09:21:12 Using cached future-1.0.0-py3-none-any.whl (491 kB) 09:21:12 Collecting numpy<3 09:21:12 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) 09:21:13 Collecting Pillow>=10.0.0 09:21:13 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 09:21:13 Collecting PyYAML 09:21:13 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 09:21:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 09:21:13 Collecting requests 09:21:13 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 09:21:14 Collecting portalocker 09:21:14 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 09:21:15 Collecting charset_normalizer<4,>=2 09:21:15 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 09:21:15 Collecting idna<4,>=2.5 09:21:15 Using cached idna-3.10-py3-none-any.whl (70 kB) 09:21:15 Collecting certifi>=2017.4.17 09:21:15 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB) 09:21:16 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 09:21:16 Attempting uninstall: setuptools 09:21:16 Found existing installation: setuptools 65.5.1 09:21:16 Uninstalling setuptools-65.5.1: 09:21:16 Successfully uninstalled setuptools-65.5.1 09:21:21 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.1 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 09:21:21 09:21:21 [notice] A new release of pip available: 22.3.1 -> 25.1.1 09:21:21 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:21:21 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 09:21:21 ++ deactivate nondestructive 09:21:21 ++ '[' -n '' ']' 09:21:21 ++ '[' -n '' ']' 09:21:21 ++ hash -r 09:21:21 ++ '[' -n '' ']' 09:21:21 ++ unset VIRTUAL_ENV 09:21:21 ++ unset VIRTUAL_ENV_PROMPT 09:21:21 ++ '[' '!' nondestructive = nondestructive ']' 09:21:21 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 09:21:21 ++ export VIRTUAL_ENV 09:21:21 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:21:21 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:21:21 ++ export PATH 09:21:21 ++ '[' -n '' ']' 09:21:21 ++ '[' -z '' ']' 09:21:21 ++ _OLD_VIRTUAL_PS1= 09:21:21 ++ PS1='(omero-virtualenv) ' 09:21:21 ++ export PS1 09:21:21 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 09:21:21 ++ export VIRTUAL_ENV_PROMPT 09:21:21 ++ hash -r 09:21:21 + source docs/hudson/OMERO.sh 09:21:21 ++ set -e 09:21:21 ++ set -u 09:21:21 ++ set -x 09:21:21 ++ source docs/hudson/functions.sh 09:21:21 ++ echo Building merge_ci 09:21:21 Building merge_ci 09:21:21 ++ python3 ./build.py build-dev release-all 09:21:21 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:21:22 09:21:22 check-ivy: 09:21:22 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 09:21:22 Created dir: /home/omero/workspace/OMERO-build/src/target 09:21:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:21:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:21:23 09:21:23 build-scons: 09:21:23 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:21:23 No sub-builds to iterate on 09:21:23 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:21:23 09:21:23 buildlist: 09:21:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:21:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:21:23 09:21:23 clean: 09:21:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:21:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:21:24 09:21:24 python-clean: 09:21:24 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:21:24 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:21:24 warnings.warn( 09:21:24 running clean 09:21:24 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 09:21:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:21:24 09:21:24 python-clean: 09:21:24 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:21:24 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:21:24 warnings.warn( 09:21:24 running clean 09:21:24 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 09:21:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:21:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:21:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:21:24 09:21:24 python-clean: 09:21:24 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:21:24 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-4523d266fe-ice36-b451') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:21:24 warnings.warn( 09:21:24 running clean 09:21:24 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 09:21:24 Deleting directory /home/omero/workspace/OMERO-build/src/target 09:21:24 09:21:24 build-scons: 09:21:24 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:21:25 09:21:25 build: 09:21:25 No sub-builds to iterate on 09:21:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:21:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:21:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:21:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:21:25 09:21:25 tools-init: 09:21:25 no-op 09:21:25 09:21:25 retrieve: 09:21:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:21:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:21:26 WARNING: An illegal reflective access operation has occurred 09:21:26 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 09:21:26 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 09:21:26 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 09:21:26 WARNING: All illegal access operations will be denied in a future release 09:21:52 09:21:52 prepare: 09:21:52 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:21:52 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:21:52 09:21:52 pre-compile: 09:21:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:21:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:21:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:21:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:21:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:21:53 09:21:53 compile: 09:21:53 no-op 09:21:53 09:21:53 package: 09:21:53 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 09:21:53 09:21:53 install: 09:21:53 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-569-4523d266fe-ice36-b451 :: integration :: Thu Jun 26 09:21:25 UTC 2025 09:21:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 09:21:53 :: publishing :: omero#omero_client 09:21:53 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-4523d266fe-ice36-b451/omero_client-5.6.3-569-4523d266fe-ice36-b451.jar 09:21:53 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-4523d266fe-ice36-b451/omero_client-5.6.3-569-4523d266fe-ice36-b451.xml 09:21:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:21:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:21:54 09:21:54 retrieve: 09:21:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:21:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:21:54 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:21:54 09:21:54 dist: 09:21:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 09:21:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 09:21:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:21:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:21:54 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 09:21:54 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 09:21:54 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 09:21:54 Entering /home/omero/workspace/OMERO-build/src/components/tests... 09:21:54 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:21:54 09:21:54 copy-licenses: 09:21:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:21:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 09:21:54 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 09:21:54 09:21:54 copy-history: 09:21:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:21:54 09:21:54 copy-etc: 09:21:54 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 09:21:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 09:21:54 09:21:54 copy-sql: 09:21:54 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 09:21:59 09:21:59 copy-server: 09:21:59 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 09:21:59 09:21:59 copy-client: 09:21:59 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 09:22:00 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 09:22:00 09:22:00 update-version: 09:22:00 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 09:22:00 09:22:00 create-workdirs: 09:22:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 09:22:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 09:22:00 09:22:00 copy-luts: 09:22:00 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:22:00 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:22:00 09:22:00 test-compile: 09:22:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:22:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:22:01 09:22:01 testng-init: 09:22:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:22:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:22:04 09:22:04,285 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 09:22:04 09:22:04,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service. 09:22:04 09:22:04,287 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 09:22:04 09:22:04,291 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 09:22:04 09:22:04,291 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 09:22:04 09:22:04,292 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 09:22:04 09:22:04,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 09:22:04 09:22:04,292 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 09:22:04 09:22:04,294 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 09:22:04 09:22:04,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 09:22:04 09:22:04,295 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:22:04 09:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath. 09:22:04 09:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:22:04 09:22:04,296 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 09:22:04 09:22:04,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 09:22:04 09:22:04,497 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 09:22:04 09:22:04,516 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 09:22:04 09:22:04,518 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 09:22:04 09:22:04,518 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender. 09:22:04 09:22:04,578 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 09:22:04 09:22:04,579 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 09:22:04 09:22:04,581 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration. 09:22:04 09:22:04,583 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point 09:22:04 09:22:04,583 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 289 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 09:22:04 09:22:04 lifecycle.test-compile: 09:22:04 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:22:04 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:22:04 warning: [options] bootstrap class path not set in conjunction with -source 8 09:22:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:06 import omero.grid.RawAccessRequest; 09:22:06 ^ 09:22:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:06 import omero.grid.RawAccessRequest; 09:22:06 ^ 09:22:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:06 import omero.grid.RawAccessRequest; 09:22:06 ^ 09:22:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:06 import omero.model.ImportJob; 09:22:06 ^ 09:22:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:22:06 import omero.model.ImportJobI; 09:22:06 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 09:22:07 IObject link = (IObject) linkClass.newInstance(); 09:22:07 ^ 09:22:07 where T is a type-variable: 09:22:07 T extends Object declared in class Class 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 09:22:07 T copy = (T) obj.getClass().newInstance(); 09:22:07 ^ 09:22:07 where T is a type-variable: 09:22:07 T extends Object declared in class Class 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:07 RawAccessRequest raw = new RawAccessRequest(); 09:22:07 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:07 RawAccessRequest raw = new RawAccessRequest(); 09:22:07 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:22:07 raw.repoUuid = legacy.root().getHash().getValue(); 09:22:07 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 09:22:07 raw.command = "rm"; 09:22:07 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 09:22:07 raw.args = Arrays.asList(path); 09:22:07 ^ 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 09:22:07 final IObject link = linkClass.newInstance(); 09:22:07 ^ 09:22:07 where T is a type-variable: 09:22:07 T extends Object declared in class Class 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 09:22:07 originalLink.setChild(annotationClass.newInstance()); 09:22:07 ^ 09:22:07 where T is a type-variable: 09:22:07 T extends Object declared in class Class 09:22:07 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:22:07 RoiResult r = svc.findByImage(id, new RoiOptions()); 09:22:07 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:08 final RawAccessRequest request = new RawAccessRequest(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:08 final RawAccessRequest request = new RawAccessRequest(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:22:08 request.repoUuid = repo.root().getHash().getValue(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 09:22:08 request.command = "exists"; 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 09:22:08 request.args = Collections.singletonList(dirPath); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:08 final RawAccessRequest request = new RawAccessRequest(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:22:08 final RawAccessRequest request = new RawAccessRequest(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:22:08 request.repoUuid = repo.root().getHash().getValue(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 09:22:08 request.command = "exists"; 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 09:22:08 request.args = Collections.singletonList(dirName); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:08 final ImportJob importJob = new ImportJobI(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:22:08 final ImportJob importJob = new ImportJobI(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 09:22:08 importJob.setImageName(omero.rtypes.rstring(name)); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 09:22:08 importJob.setImageDescription(omero.rtypes.rstring(desc)); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:08 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:22:08 final String savedName = sent.getImageName().getValue().toString(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:22:08 final String savedDesc = sent.getImageDescription().getValue().toString(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:22:08 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:22:08 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:22:08 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 RoiResult r = svc.findByImage(image.getId().getValue(), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 09:22:08 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 09:22:08 table = svc.getTable(f.getId().getValue()); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 RoiResult r = svc.findByImage(image.getId().getValue(), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:22:08 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:22:08 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:22:08 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 09:22:08 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:22:08 svc.getShapeStatsRestricted( 09:22:08 ^ 09:22:08 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:22:08 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 09:22:08 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:22:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:22:09 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:22:09 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:22:09 request.typesToIgnore = Collections.singletonList("Annotation"); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:22:09 request.typesToIgnore = Collections.singletonList("Annotation"); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:22:09 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:22:09 p2.setRelatedTo(p1); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:22:09 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:22:09 pixels1.setRelatedTo(pixels2); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:22:09 Pixels pixels = pixels1.getRelatedTo(); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:22:09 Assert.assertNull(pixels1.getRelatedTo()); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:22:09 pixels1.setRelatedTo(pixels2); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:22:09 Pixels pixels = pixels1.getRelatedTo(); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:22:09 Assert.assertNull(pixels1.getRelatedTo()); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:09 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:09 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:22:09 ^ 09:22:09 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:22:09 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:22:09 ^ 09:22:09 Note: Some input files use unchecked or unsafe operations. 09:22:09 Note: Recompile with -Xlint:unchecked for details. 09:22:09 88 warnings 09:22:09 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1682363129.tmp 09:22:09 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 09:22:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:22:09 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-569-4523d266fe-ice36-b451 :: integration :: Thu Jun 26 09:22:00 UTC 2025 09:22:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 09:22:09 :: publishing :: omero#OmeroJava-test 09:22:09 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-4523d266fe-ice36-b451.jar 09:22:09 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-4523d266fe-ice36-b451.xml 09:22:09 09:22:09 build-eclipse: 09:22:09 No sub-builds to iterate on 09:22:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:22:10 09:22:10 retrieve: 09:22:10 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:22:10 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:22:12 09:22:12 prepare: 09:22:12 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:22:13 09:22:13 release-clients: 09:22:13 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-569-4523d266fe-ice36-b451.zip 09:22:18 09:22:18 release-zip: 09:22:18 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-569-4523d266fe-ice36-b451.zip 09:22:29 09:22:29 BUILD SUCCESSFUL 09:22:29 Total time: 1 minute 8 seconds 09:22:29 ++ '[' -d .git ']' 09:22:29 ++ python3 ./build.py release-src 09:22:30 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:22:30 09:22:30 release-src-git: 09:22:30 Releasing openmicroscopy-5.6.3-569-4523d266fe-ice36-b451 09:22:31 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-4523d266fe-ice36-b451.zip 09:22:31 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-4523d266fe-ice36-b451-base.zip 09:22:33 09:22:33 BUILD SUCCESSFUL 09:22:33 Total time: 3 seconds 09:22:33 ++ echo BUILD_NUMBER=451 09:22:33 ++ echo OMERO_BRANCH=merge_ci 09:22:33 ++ git_info 09:22:33 +++ git rev-parse HEAD 09:22:33 ++ HEAD=4523d266feca187cbb47b1e00cc14d97bef8c79d 09:22:33 ++ git log --max-count=1 4523d266feca187cbb47b1e00cc14d97bef8c79d 09:22:33 ++ env 09:22:33 ++ sort 09:22:33 Archiving artifacts 09:22:57 Finished: SUCCESS