00:23:42 Started by upstream project "Trigger" build number 538 00:23:42 originally caused by: 00:23:42 Started by timer 00:23:42 Running as SYSTEM 00:23:42 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:23:42 The recommended git tool is: NONE 00:23:42 No credentials specified 00:23:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:23:42 Fetching changes from the remote Git repository 00:23:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:23:42 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:23:42 > git --version # timeout=10 00:23:42 > git --version # 'git version 2.43.5' 00:23:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:23:43 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:23:43 Checking out Revision 419ff7a76c7d452b239d4de7b561285ff3e90223 (origin/merge_ci) 00:23:43 > git config core.sparsecheckout # timeout=10 00:23:43 > git checkout -f 419ff7a76c7d452b239d4de7b561285ff3e90223 # timeout=10 00:23:43 Commit message: "Add version.properties to etc/omero.properties" 00:23:43 > git rev-list --no-walk 3d632257483e2cd49a4a70741f3fd089ab77353f # timeout=10 00:23:43 Cleaning workspace 00:23:43 > git rev-parse --verify HEAD # timeout=10 00:23:43 Resetting working tree 00:23:43 > git reset --hard # timeout=10 00:23:43 > git clean -fdx # timeout=10 00:23:43 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 446 00:23:43 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4859647317561683196.sh 00:23:43 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 00:23:43 + cd src 00:23:43 + export OMERO_BRANCH=merge_ci 00:23:43 + OMERO_BRANCH=merge_ci 00:23:43 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:23:43 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:23:43 + source /home/omero/settings.env 00:23:43 ++ OMERO_DB_HOST=pg 00:23:43 ++ OMERO_DB_USER=postgres 00:23:43 ++ OMERO_DB_PASS= 00:23:43 ++ OMERO_ROOT_PASS=omero 00:23:43 ++ OMERO_DATA_DIR=/OMERO 00:23:43 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:23:43 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:23:47 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:23:47 Collecting zeroc-ice==3.6.5 00:23:48 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:23:50 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.4 MB/s eta 0:00:00 00:23:50 Installing collected packages: zeroc-ice 00:23:51 Successfully installed zeroc-ice-3.6.5 00:23:51 00:23:51 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:23:51 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:23:51 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:23:51 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:23:52 Collecting setuptools<66 00:23:52 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:23:52 Collecting omero-py 00:23:52 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 00:23:52 Collecting urllib3<2 00:23:52 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:23:52 Collecting appdirs 00:23:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:23:52 Collecting future 00:23:52 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:23:52 Collecting numpy<3 00:23:52 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) 00:23:53 Collecting Pillow>=10.0.0 00:23:53 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 00:23:53 Collecting PyYAML 00:23:53 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:23:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:23:53 Collecting requests 00:23:53 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 00:23:53 Collecting portalocker 00:23:53 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:23:54 Collecting charset_normalizer<4,>=2 00:23:54 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 00:23:54 Collecting idna<4,>=2.5 00:23:54 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:23:54 Collecting certifi>=2017.4.17 00:23:54 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB) 00:23:54 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:23:54 Attempting uninstall: setuptools 00:23:54 Found existing installation: setuptools 65.5.1 00:23:54 Uninstalling setuptools-65.5.1: 00:23:54 Successfully uninstalled setuptools-65.5.1 00:24:00 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.1 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 00:24:00 00:24:00 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:24:00 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:24:00 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:24:00 ++ deactivate nondestructive 00:24:00 ++ '[' -n '' ']' 00:24:00 ++ '[' -n '' ']' 00:24:00 ++ hash -r 00:24:00 ++ '[' -n '' ']' 00:24:00 ++ unset VIRTUAL_ENV 00:24:00 ++ unset VIRTUAL_ENV_PROMPT 00:24:00 ++ '[' '!' nondestructive = nondestructive ']' 00:24:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:24:00 ++ export VIRTUAL_ENV 00:24:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:24:00 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:24:00 ++ export PATH 00:24:00 ++ '[' -n '' ']' 00:24:00 ++ '[' -z '' ']' 00:24:00 ++ _OLD_VIRTUAL_PS1= 00:24:00 ++ PS1='(omero-virtualenv) ' 00:24:00 ++ export PS1 00:24:00 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:24:00 ++ export VIRTUAL_ENV_PROMPT 00:24:00 ++ hash -r 00:24:00 + source docs/hudson/OMERO.sh 00:24:00 ++ set -e 00:24:00 ++ set -u 00:24:00 ++ set -x 00:24:00 ++ source docs/hudson/functions.sh 00:24:00 ++ echo Building merge_ci 00:24:00 Building merge_ci 00:24:00 ++ python3 ./build.py build-dev release-all 00:24:00 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:24:00 00:24:00 check-ivy: 00:24:00 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:24:00 Created dir: /home/omero/workspace/OMERO-build/src/target 00:24:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:01 00:24:01 build-scons: 00:24:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:24:01 No sub-builds to iterate on 00:24:01 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:24:02 00:24:02 buildlist: 00:24:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:02 00:24:02 clean: 00:24:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:02 00:24:02 python-clean: 00:24:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:24:02 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-419ff7a76c-ice36-b453') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:24:02 warnings.warn( 00:24:02 running clean 00:24:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:24:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:24:02 00:24:02 python-clean: 00:24:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:24:02 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-419ff7a76c-ice36-b453') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:24:02 warnings.warn( 00:24:02 running clean 00:24:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:24:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:03 00:24:03 python-clean: 00:24:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:24:03 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-419ff7a76c-ice36-b453') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:24:03 warnings.warn( 00:24:03 running clean 00:24:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:24:03 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:24:03 00:24:03 build-scons: 00:24:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:24:03 00:24:03 build: 00:24:03 No sub-builds to iterate on 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:24:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:24:03 00:24:03 tools-init: 00:24:03 no-op 00:24:03 00:24:03 retrieve: 00:24:03 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:04 WARNING: An illegal reflective access operation has occurred 00:24:04 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:24:04 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:24:04 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:24:04 WARNING: All illegal access operations will be denied in a future release 00:24:16 00:24:16 prepare: 00:24:16 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:24:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:24:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:24:16 00:24:16 pre-compile: 00:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:24:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:24:16 00:24:16 compile: 00:24:16 no-op 00:24:16 00:24:16 package: 00:24:16 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:24:17 00:24:17 install: 00:24:17 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-569-419ff7a76c-ice36-b453 :: integration :: Sat Jun 28 00:24:03 UTC 2025 00:24:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:24:17 :: publishing :: omero#omero_client 00:24:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-419ff7a76c-ice36-b453/omero_client-5.6.3-569-419ff7a76c-ice36-b453.jar 00:24:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-419ff7a76c-ice36-b453/omero_client-5.6.3-569-419ff7a76c-ice36-b453.xml 00:24:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:17 00:24:17 retrieve: 00:24:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:24:18 00:24:18 dist: 00:24:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:24:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:24:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:24:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:24:18 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:24:18 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:24:18 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:24:18 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:24:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:24:18 00:24:18 copy-licenses: 00:24:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:24:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:24:18 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:24:18 00:24:18 copy-history: 00:24:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:24:18 00:24:18 copy-etc: 00:24:18 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:24:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:24:18 00:24:18 copy-sql: 00:24:18 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:24:23 00:24:23 copy-server: 00:24:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:24:23 00:24:23 copy-client: 00:24:23 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:24:24 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:24:25 00:24:25 update-version: 00:24:25 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:24:25 00:24:25 create-workdirs: 00:24:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:24:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:24:25 00:24:25 copy-luts: 00:24:25 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:24:25 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:24:25 00:24:25 test-compile: 00:24:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:24:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:24:25 00:24:25 testng-init: 00:24:25 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:25 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:28 00:24:28,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:24:28 00:24:28,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - No custom configurators were discovered as a service. 00:24:28 00:24:28,224 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:24:28 00:24:28,228 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:24:28 00:24:28,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:24:28 00:24:28,228 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:24:28 00:24:28,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:24:28 00:24:28,229 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:24:28 00:24:28,231 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:24:28 00:24:28,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:24:28 00:24:28,231 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:24:28 00:24:28,232 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs multiple times on the classpath. 00:24:28 00:24:28,232 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:24:28 00:24:28,232 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1c510181 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:24:28 00:24:28,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:24:28 00:24:28,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:24:28 00:24:28,448 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:24:28 00:24:28,450 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:24:28 00:24:28,450 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Please move "immediateFlush" property into the enclosing appender. 00:24:28 00:24:28,511 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4a74e70d - Setting the "immediateFlush" property of the enclosing appender to true 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:24:28 00:24:28,512 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:24:28 00:24:28,513 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@513156fd - End of configuration. 00:24:28 00:24:28,515 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4fd43b14 - Registering current configuration as safe fallback point 00:24:28 00:24:28,515 |-INFO in ch.qos.logback.classic.util.ContextInitializer@52599443 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:24:28 00:24:28 lifecycle.test-compile: 00:24:28 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:24:28 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:24:28 warning: [options] bootstrap class path not set in conjunction with -source 8 00:24:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:29 import omero.grid.RawAccessRequest; 00:24:29 ^ 00:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:30 import omero.grid.RawAccessRequest; 00:24:30 ^ 00:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:30 import omero.grid.RawAccessRequest; 00:24:30 ^ 00:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:30 import omero.model.ImportJob; 00:24:30 ^ 00:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:24:30 import omero.model.ImportJobI; 00:24:30 ^ 00:24:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:24:30 IObject link = (IObject) linkClass.newInstance(); 00:24:30 ^ 00:24:30 where T is a type-variable: 00:24:30 T extends Object declared in class Class 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:24:31 T copy = (T) obj.getClass().newInstance(); 00:24:31 ^ 00:24:31 where T is a type-variable: 00:24:31 T extends Object declared in class Class 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:31 RawAccessRequest raw = new RawAccessRequest(); 00:24:31 ^ 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:31 RawAccessRequest raw = new RawAccessRequest(); 00:24:31 ^ 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:24:31 raw.repoUuid = legacy.root().getHash().getValue(); 00:24:31 ^ 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:24:31 raw.command = "rm"; 00:24:31 ^ 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:24:31 raw.args = Arrays.asList(path); 00:24:31 ^ 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:24:31 final IObject link = linkClass.newInstance(); 00:24:31 ^ 00:24:31 where T is a type-variable: 00:24:31 T extends Object declared in class Class 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:24:31 originalLink.setChild(annotationClass.newInstance()); 00:24:31 ^ 00:24:31 where T is a type-variable: 00:24:31 T extends Object declared in class Class 00:24:31 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:24:31 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:24:31 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:32 final RawAccessRequest request = new RawAccessRequest(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:32 final RawAccessRequest request = new RawAccessRequest(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:24:32 request.repoUuid = repo.root().getHash().getValue(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:24:32 request.command = "exists"; 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:24:32 request.args = Collections.singletonList(dirPath); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:32 final RawAccessRequest request = new RawAccessRequest(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:24:32 final RawAccessRequest request = new RawAccessRequest(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:24:32 request.repoUuid = repo.root().getHash().getValue(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:24:32 request.command = "exists"; 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:24:32 request.args = Collections.singletonList(dirName); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:32 final ImportJob importJob = new ImportJobI(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:24:32 final ImportJob importJob = new ImportJobI(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:24:32 importJob.setImageName(omero.rtypes.rstring(name)); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:24:32 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:32 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:24:32 final String savedName = sent.getImageName().getValue().toString(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:24:32 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:24:32 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:24:32 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:24:32 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 RoiResult r = svc.findByImage(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:24:32 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:24:32 table = svc.getTable(f.getId().getValue()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 RoiResult r = svc.findByImage(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:24:32 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:24:32 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:24:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:24:32 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:24:32 svc.getShapeStatsRestricted( 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:24:32 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:24:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:24:32 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:24:32 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:24:32 request.typesToIgnore = Collections.singletonList("Annotation"); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:24:32 request.typesToIgnore = Collections.singletonList("Annotation"); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:24:32 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:24:32 p2.setRelatedTo(p1); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:24:32 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:24:32 pixels1.setRelatedTo(pixels2); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:24:32 Pixels pixels = pixels1.getRelatedTo(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:24:32 Assert.assertNull(pixels1.getRelatedTo()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:24:32 pixels1.setRelatedTo(pixels2); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:24:32 Pixels pixels = pixels1.getRelatedTo(); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:24:32 Assert.assertNull(pixels1.getRelatedTo()); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:24:32 ^ 00:24:32 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:24:32 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:24:32 ^ 00:24:33 Note: Some input files use unchecked or unsafe operations. 00:24:33 Note: Recompile with -Xlint:unchecked for details. 00:24:33 88 warnings 00:24:33 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_112326591.tmp 00:24:33 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:24:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:33 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-569-419ff7a76c-ice36-b453 :: integration :: Sat Jun 28 00:24:25 UTC 2025 00:24:33 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:24:33 :: publishing :: omero#OmeroJava-test 00:24:33 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-419ff7a76c-ice36-b453.jar 00:24:33 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-419ff7a76c-ice36-b453.xml 00:24:33 00:24:33 build-eclipse: 00:24:33 No sub-builds to iterate on 00:24:33 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:24:33 00:24:33 retrieve: 00:24:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:24:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:24:35 00:24:35 prepare: 00:24:35 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:24:36 00:24:36 release-clients: 00:24:36 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-569-419ff7a76c-ice36-b453.zip 00:24:42 00:24:42 release-zip: 00:24:42 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-569-419ff7a76c-ice36-b453.zip 00:24:53 00:24:53 BUILD SUCCESSFUL 00:24:53 Total time: 53 seconds 00:24:53 ++ '[' -d .git ']' 00:24:53 ++ python3 ./build.py release-src 00:24:53 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:24:54 00:24:54 release-src-git: 00:24:54 Releasing openmicroscopy-5.6.3-569-419ff7a76c-ice36-b453 00:24:55 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-419ff7a76c-ice36-b453.zip 00:24:55 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-419ff7a76c-ice36-b453-base.zip 00:24:57 00:24:57 BUILD SUCCESSFUL 00:24:57 Total time: 3 seconds 00:24:57 ++ echo BUILD_NUMBER=453 00:24:57 ++ echo OMERO_BRANCH=merge_ci 00:24:57 ++ git_info 00:24:57 +++ git rev-parse HEAD 00:24:57 ++ HEAD=419ff7a76c7d452b239d4de7b561285ff3e90223 00:24:57 ++ git log --max-count=1 419ff7a76c7d452b239d4de7b561285ff3e90223 00:24:57 ++ env 00:24:57 ++ sort 00:24:57 Archiving artifacts 00:25:21 Finished: SUCCESS