00:22:56 Started by upstream project "Trigger" build number 545 00:22:56 originally caused by: 00:22:56 Started by timer 00:22:56 Running as SYSTEM 00:22:56 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:22:56 The recommended git tool is: NONE 00:22:56 No credentials specified 00:22:56 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:22:56 Fetching changes from the remote Git repository 00:22:56 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:22:56 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:22:56 > git --version # timeout=10 00:22:56 > git --version # 'git version 2.43.5' 00:22:56 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:22:56 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:22:56 Checking out Revision 8473152d1c62ad43eb62878e10c07534377ed009 (origin/merge_ci) 00:22:56 > git config core.sparsecheckout # timeout=10 00:22:56 > git checkout -f 8473152d1c62ad43eb62878e10c07534377ed009 # timeout=10 00:22:56 Commit message: "Add version.properties to etc/omero.properties" 00:22:56 > git rev-list --no-walk 87bc90da9c66ffe6b6772a7ae7f1a0a7df68cac1 # timeout=10 00:22:56 Cleaning workspace 00:22:56 > git rev-parse --verify HEAD # timeout=10 00:22:56 Resetting working tree 00:22:56 > git reset --hard # timeout=10 00:22:56 > git clean -fdx # timeout=10 00:22:57 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 452 00:22:57 [OMERO-build] $ /bin/bash -xe /tmp/jenkins13825761832130985649.sh 00:22:57 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 00:22:57 + cd src 00:22:57 + export OMERO_BRANCH=merge_ci 00:22:57 + OMERO_BRANCH=merge_ci 00:22:57 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:22:57 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:22:57 + source /home/omero/settings.env 00:22:57 ++ OMERO_DB_HOST=pg 00:22:57 ++ OMERO_DB_USER=postgres 00:22:57 ++ OMERO_DB_PASS= 00:22:57 ++ OMERO_ROOT_PASS=omero 00:22:57 ++ OMERO_DATA_DIR=/OMERO 00:22:57 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:22:57 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:23:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:23:01 Collecting zeroc-ice==3.6.5 00:23:02 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:23:04 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 9.2 MB/s eta 0:00:00 00:23:04 Installing collected packages: zeroc-ice 00:23:06 Successfully installed zeroc-ice-3.6.5 00:23:06 00:23:06 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:23:06 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:23:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:23:06 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:23:06 Collecting setuptools<66 00:23:06 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:23:07 Collecting omero-py 00:23:07 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 00:23:07 Collecting urllib3<2 00:23:07 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 00:23:07 Collecting appdirs 00:23:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:23:07 Collecting future 00:23:07 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:23:07 Collecting numpy<3 00:23:07 Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) 00:23:08 Collecting Pillow>=10.0.0 00:23:08 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 00:23:08 Collecting PyYAML 00:23:08 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 00:23:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:23:08 Collecting requests 00:23:08 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 00:23:08 Collecting portalocker 00:23:08 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:23:08 Collecting charset_normalizer<4,>=2 00:23:08 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 00:23:08 Collecting idna<4,>=2.5 00:23:08 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:23:08 Collecting certifi>=2017.4.17 00:23:08 Using cached certifi-2025.6.15-py3-none-any.whl (157 kB) 00:23:09 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:23:09 Attempting uninstall: setuptools 00:23:09 Found existing installation: setuptools 65.5.1 00:23:09 Uninstalling setuptools-65.5.1: 00:23:09 Successfully uninstalled setuptools-65.5.1 00:23:14 Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.6.15 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.1 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 00:23:14 00:23:14 [notice] A new release of pip available: 22.3.1 -> 25.1.1 00:23:14 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:23:14 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:23:14 ++ deactivate nondestructive 00:23:14 ++ '[' -n '' ']' 00:23:14 ++ '[' -n '' ']' 00:23:14 ++ hash -r 00:23:14 ++ '[' -n '' ']' 00:23:14 ++ unset VIRTUAL_ENV 00:23:14 ++ unset VIRTUAL_ENV_PROMPT 00:23:14 ++ '[' '!' nondestructive = nondestructive ']' 00:23:14 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:23:14 ++ export VIRTUAL_ENV 00:23:14 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:23:14 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:23:14 ++ export PATH 00:23:14 ++ '[' -n '' ']' 00:23:14 ++ '[' -z '' ']' 00:23:14 ++ _OLD_VIRTUAL_PS1= 00:23:14 ++ PS1='(omero-virtualenv) ' 00:23:14 ++ export PS1 00:23:14 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:23:14 ++ export VIRTUAL_ENV_PROMPT 00:23:14 ++ hash -r 00:23:14 + source docs/hudson/OMERO.sh 00:23:14 ++ set -e 00:23:14 ++ set -u 00:23:14 ++ set -x 00:23:14 ++ source docs/hudson/functions.sh 00:23:14 ++ echo Building merge_ci 00:23:14 Building merge_ci 00:23:14 ++ python3 ./build.py build-dev release-all 00:23:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:23:15 00:23:15 check-ivy: 00:23:15 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:23:15 Created dir: /home/omero/workspace/OMERO-build/src/target 00:23:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:16 00:23:16 build-scons: 00:23:16 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:23:16 No sub-builds to iterate on 00:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:23:16 00:23:16 buildlist: 00:23:16 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:16 00:23:16 clean: 00:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:17 00:23:17 python-clean: 00:23:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:23:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-8473152d1c-ice36-b459') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:23:17 warnings.warn( 00:23:17 running clean 00:23:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:23:17 00:23:17 python-clean: 00:23:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:23:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-8473152d1c-ice36-b459') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:23:17 warnings.warn( 00:23:17 running clean 00:23:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:17 00:23:17 python-clean: 00:23:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:23:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-569-8473152d1c-ice36-b459') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:23:17 warnings.warn( 00:23:17 running clean 00:23:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:23:17 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:23:18 00:23:18 build-scons: 00:23:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:23:18 00:23:18 build: 00:23:18 No sub-builds to iterate on 00:23:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:23:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:23:18 00:23:18 tools-init: 00:23:18 no-op 00:23:18 00:23:18 retrieve: 00:23:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:19 WARNING: An illegal reflective access operation has occurred 00:23:19 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:23:19 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:23:19 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:23:19 WARNING: All illegal access operations will be denied in a future release 00:23:31 00:23:31 prepare: 00:23:31 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:23:31 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:23:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:23:31 00:23:31 pre-compile: 00:23:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:23:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:23:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:23:32 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:23:32 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:23:32 00:23:32 compile: 00:23:32 no-op 00:23:32 00:23:32 package: 00:23:32 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:23:32 00:23:32 install: 00:23:32 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-569-8473152d1c-ice36-b459 :: integration :: Sat Jul 05 00:23:18 UTC 2025 00:23:32 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:23:32 :: publishing :: omero#omero_client 00:23:32 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-8473152d1c-ice36-b459/omero_client-5.6.3-569-8473152d1c-ice36-b459.jar 00:23:32 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-569-8473152d1c-ice36-b459/omero_client-5.6.3-569-8473152d1c-ice36-b459.xml 00:23:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:33 00:23:33 retrieve: 00:23:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:33 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:23:33 00:23:33 dist: 00:23:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:23:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:23:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:23:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:23:33 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:23:33 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:23:33 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:23:33 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:23:33 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:23:33 00:23:33 copy-licenses: 00:23:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:23:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:23:33 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:23:33 00:23:33 copy-history: 00:23:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:23:33 00:23:33 copy-etc: 00:23:33 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:23:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:23:33 00:23:33 copy-sql: 00:23:33 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:23:37 00:23:37 copy-server: 00:23:37 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:23:37 00:23:37 copy-client: 00:23:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:23:39 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:23:39 00:23:39 update-version: 00:23:39 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:23:39 00:23:39 create-workdirs: 00:23:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:23:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:23:39 00:23:39 copy-luts: 00:23:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:23:39 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:23:39 00:23:39 test-compile: 00:23:39 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:23:39 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:23:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:23:40 00:23:40 testng-init: 00:23:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:43 00:23:42,770 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:23:43 00:23:42,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - No custom configurators were discovered as a service. 00:23:43 00:23:42,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:23:43 00:23:42,776 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:23:43 00:23:42,776 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:23:43 00:23:42,776 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:23:43 00:23:42,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:23:43 00:23:42,777 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:23:43 00:23:42,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:23:43 00:23:42,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:23:43 00:23:42,779 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:23:43 00:23:42,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs multiple times on the classpath. 00:23:43 00:23:42,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:23:43 00:23:42,780 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7eecb648 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:23:43 00:23:42,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:23:43 00:23:42,978 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:23:43 00:23:42,998 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:23:43 00:23:43,000 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:23:43 00:23:43,000 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Please move "immediateFlush" property into the enclosing appender. 00:23:43 00:23:43,062 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@52599443 - Setting the "immediateFlush" property of the enclosing appender to true 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:23:43 00:23:43,063 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:23:43 00:23:43,064 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1c510181 - End of configuration. 00:23:43 00:23:43,067 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4a74e70d - Registering current configuration as safe fallback point 00:23:43 00:23:43,067 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6a478680 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 288 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:23:43 00:23:43 lifecycle.test-compile: 00:23:43 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:23:43 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:23:43 warning: [options] bootstrap class path not set in conjunction with -source 8 00:23:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:44 import omero.grid.RawAccessRequest; 00:23:44 ^ 00:23:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:44 import omero.grid.RawAccessRequest; 00:23:44 ^ 00:23:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:44 import omero.grid.RawAccessRequest; 00:23:44 ^ 00:23:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:44 import omero.model.ImportJob; 00:23:44 ^ 00:23:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:23:44 import omero.model.ImportJobI; 00:23:44 ^ 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:23:45 IObject link = (IObject) linkClass.newInstance(); 00:23:45 ^ 00:23:45 where T is a type-variable: 00:23:45 T extends Object declared in class Class 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:23:45 T copy = (T) obj.getClass().newInstance(); 00:23:45 ^ 00:23:45 where T is a type-variable: 00:23:45 T extends Object declared in class Class 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:45 RawAccessRequest raw = new RawAccessRequest(); 00:23:45 ^ 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:45 RawAccessRequest raw = new RawAccessRequest(); 00:23:45 ^ 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:23:45 raw.repoUuid = legacy.root().getHash().getValue(); 00:23:45 ^ 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:23:45 raw.command = "rm"; 00:23:45 ^ 00:23:45 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:23:45 raw.args = Arrays.asList(path); 00:23:45 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:23:46 final IObject link = linkClass.newInstance(); 00:23:46 ^ 00:23:46 where T is a type-variable: 00:23:46 T extends Object declared in class Class 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:23:46 originalLink.setChild(annotationClass.newInstance()); 00:23:46 ^ 00:23:46 where T is a type-variable: 00:23:46 T extends Object declared in class Class 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:23:46 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:46 final RawAccessRequest request = new RawAccessRequest(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:46 final RawAccessRequest request = new RawAccessRequest(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:23:46 request.repoUuid = repo.root().getHash().getValue(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:23:46 request.command = "exists"; 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:23:46 request.args = Collections.singletonList(dirPath); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:46 final RawAccessRequest request = new RawAccessRequest(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:23:46 final RawAccessRequest request = new RawAccessRequest(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:23:46 request.repoUuid = repo.root().getHash().getValue(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:23:46 request.command = "exists"; 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:23:46 request.args = Collections.singletonList(dirName); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:46 final ImportJob importJob = new ImportJobI(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:23:46 final ImportJob importJob = new ImportJobI(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:23:46 importJob.setImageName(omero.rtypes.rstring(name)); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:23:46 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:46 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:46 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:23:46 final String savedName = sent.getImageName().getValue().toString(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:23:46 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:46 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:23:46 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:23:46 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:23:46 ^ 00:23:46 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:23:46 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:23:46 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 RoiResult r = svc.findByImage(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:23:47 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:23:47 table = svc.getTable(f.getId().getValue()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 RoiResult r = svc.findByImage(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:23:47 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:23:47 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:23:47 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:23:47 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:23:47 svc.getShapeStatsRestricted( 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:23:47 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:23:47 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:23:47 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:23:47 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:23:47 request.typesToIgnore = Collections.singletonList("Annotation"); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:23:47 request.typesToIgnore = Collections.singletonList("Annotation"); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:23:47 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:23:47 p2.setRelatedTo(p1); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:23:47 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:23:47 pixels1.setRelatedTo(pixels2); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:23:47 Pixels pixels = pixels1.getRelatedTo(); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:23:47 Assert.assertNull(pixels1.getRelatedTo()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:23:47 pixels1.setRelatedTo(pixels2); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:23:47 Pixels pixels = pixels1.getRelatedTo(); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:23:47 Assert.assertNull(pixels1.getRelatedTo()); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:23:47 ^ 00:23:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:23:47 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:23:47 ^ 00:23:47 Note: Some input files use unchecked or unsafe operations. 00:23:47 Note: Recompile with -Xlint:unchecked for details. 00:23:47 88 warnings 00:23:47 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_479127485.tmp 00:23:47 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:23:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:48 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-569-8473152d1c-ice36-b459 :: integration :: Sat Jul 05 00:23:39 UTC 2025 00:23:48 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:23:48 :: publishing :: omero#OmeroJava-test 00:23:48 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-8473152d1c-ice36-b459.jar 00:23:48 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-569-8473152d1c-ice36-b459.xml 00:23:48 00:23:48 build-eclipse: 00:23:48 No sub-builds to iterate on 00:23:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:23:48 00:23:48 retrieve: 00:23:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:23:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:23:51 00:23:51 prepare: 00:23:51 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:23:52 00:23:52 release-clients: 00:23:52 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-569-8473152d1c-ice36-b459.zip 00:23:57 00:23:57 release-zip: 00:23:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-569-8473152d1c-ice36-b459.zip 00:24:09 00:24:09 BUILD SUCCESSFUL 00:24:09 Total time: 53 seconds 00:24:09 ++ '[' -d .git ']' 00:24:09 ++ python3 ./build.py release-src 00:24:09 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:24:09 00:24:09 release-src-git: 00:24:09 Releasing openmicroscopy-5.6.3-569-8473152d1c-ice36-b459 00:24:11 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-8473152d1c-ice36-b459.zip 00:24:11 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-569-8473152d1c-ice36-b459-base.zip 00:24:12 00:24:12 BUILD SUCCESSFUL 00:24:12 Total time: 3 seconds 00:24:12 ++ echo BUILD_NUMBER=459 00:24:12 ++ echo OMERO_BRANCH=merge_ci 00:24:12 ++ git_info 00:24:12 +++ git rev-parse HEAD 00:24:12 ++ HEAD=8473152d1c62ad43eb62878e10c07534377ed009 00:24:12 ++ git log --max-count=1 8473152d1c62ad43eb62878e10c07534377ed009 00:24:12 ++ env 00:24:12 ++ sort 00:24:12 Archiving artifacts 00:24:36 Finished: SUCCESS