07:59:20 Started by upstream project "Trigger" build number 573 07:59:20 originally caused by: 07:59:20 Started by user devspace 07:59:20 Running as SYSTEM 07:59:20 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 07:59:20 The recommended git tool is: NONE 07:59:20 No credentials specified 07:59:20 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 07:59:20 Fetching changes from the remote Git repository 07:59:20 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 07:59:20 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 07:59:20 > git --version # timeout=10 07:59:20 > git --version # 'git version 2.43.5' 07:59:20 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 07:59:28 > git rev-parse origin/merge_ci^{commit} # timeout=10 07:59:28 Checking out Revision 6f936af0c716aa530aa4fab515e65eb477daa406 (origin/merge_ci) 07:59:28 > git config core.sparsecheckout # timeout=10 07:59:28 > git checkout -f 6f936af0c716aa530aa4fab515e65eb477daa406 # timeout=10 07:59:29 Commit message: "Add version.properties to etc/omero.properties" 07:59:29 > git rev-list --no-walk 9c21c3b0e6b8b78bde3fc947a15f65dad37c72f9 # timeout=10 07:59:29 Cleaning workspace 07:59:29 > git rev-parse --verify HEAD # timeout=10 07:59:29 Resetting working tree 07:59:29 > git reset --hard # timeout=10 07:59:29 > git clean -fdx # timeout=10 07:59:30 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 475 07:59:30 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17172964950417666132.sh 07:59:30 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 07:59:30 + cd src 07:59:30 + export OMERO_BRANCH=merge_ci 07:59:30 + OMERO_BRANCH=merge_ci 07:59:30 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 07:59:30 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 07:59:30 + source /home/omero/settings.env 07:59:30 ++ OMERO_DB_HOST=pg 07:59:30 ++ OMERO_DB_USER=postgres 07:59:30 ++ OMERO_DB_PASS= 07:59:30 ++ OMERO_ROOT_PASS=omero 07:59:30 ++ OMERO_DATA_DIR=/OMERO 07:59:30 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:59:30 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 07:59:34 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 07:59:34 Collecting zeroc-ice==3.6.5 07:59:35 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 07:59:37 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.5 MB/s eta 0:00:00 07:59:37 Installing collected packages: zeroc-ice 07:59:38 Successfully installed zeroc-ice-3.6.5 07:59:38 07:59:38 [notice] A new release of pip available: 22.3.1 -> 25.1.1 07:59:38 [notice] To update, run: python3.11 -m pip install --upgrade pip 07:59:38 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 07:59:39 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 07:59:39 Collecting setuptools<66 07:59:39 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 07:59:39 Collecting omero-py 07:59:39 Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) 07:59:39 Collecting urllib3<2 07:59:39 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 07:59:39 Collecting appdirs 07:59:39 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 07:59:39 Collecting future 07:59:40 Using cached future-1.0.0-py3-none-any.whl (491 kB) 07:59:40 Collecting numpy<3 07:59:40 Using cached numpy-2.3.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 07:59:41 Collecting Pillow>=10.0.0 07:59:41 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 07:59:41 Collecting PyYAML 07:59:41 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 07:59:41 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 07:59:41 Collecting requests 07:59:41 Using cached requests-2.32.4-py3-none-any.whl (64 kB) 07:59:41 Collecting portalocker 07:59:41 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 07:59:42 Collecting charset_normalizer<4,>=2 07:59:42 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 07:59:42 Collecting idna<4,>=2.5 07:59:42 Using cached idna-3.10-py3-none-any.whl (70 kB) 07:59:42 Collecting certifi>=2017.4.17 07:59:42 Using cached certifi-2025.7.14-py3-none-any.whl (162 kB) 07:59:42 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 07:59:42 Attempting uninstall: setuptools 07:59:42 Found existing installation: setuptools 65.5.1 07:59:42 Uninstalling setuptools-65.5.1: 07:59:42 Successfully uninstalled setuptools-65.5.1 07:59:48 Successfully installed Pillow-11.3.0 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.7.14 charset_normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.3.2 omero-py-5.21.0 portalocker-3.2.0 requests-2.32.4 setuptools-65.7.0 urllib3-1.26.20 07:59:48 07:59:48 [notice] A new release of pip available: 22.3.1 -> 25.1.1 07:59:48 [notice] To update, run: python3.11 -m pip install --upgrade pip 07:59:48 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 07:59:48 ++ deactivate nondestructive 07:59:48 ++ '[' -n '' ']' 07:59:48 ++ '[' -n '' ']' 07:59:48 ++ hash -r 07:59:48 ++ '[' -n '' ']' 07:59:48 ++ unset VIRTUAL_ENV 07:59:48 ++ unset VIRTUAL_ENV_PROMPT 07:59:48 ++ '[' '!' nondestructive = nondestructive ']' 07:59:48 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 07:59:48 ++ export VIRTUAL_ENV 07:59:48 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:59:48 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:59:48 ++ export PATH 07:59:48 ++ '[' -n '' ']' 07:59:48 ++ '[' -z '' ']' 07:59:48 ++ _OLD_VIRTUAL_PS1= 07:59:48 ++ PS1='(omero-virtualenv) ' 07:59:48 ++ export PS1 07:59:48 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 07:59:48 ++ export VIRTUAL_ENV_PROMPT 07:59:48 ++ hash -r 07:59:48 + source docs/hudson/OMERO.sh 07:59:48 ++ set -e 07:59:48 ++ set -u 07:59:48 ++ set -x 07:59:48 ++ source docs/hudson/functions.sh 07:59:48 ++ echo Building merge_ci 07:59:48 Building merge_ci 07:59:48 ++ python3 ./build.py build-dev release-all 07:59:48 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 07:59:48 07:59:48 check-ivy: 07:59:48 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 07:59:48 Created dir: /home/omero/workspace/OMERO-build/src/target 07:59:49 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:59:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:59:49 07:59:49 build-scons: 07:59:49 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:59:49 No sub-builds to iterate on 07:59:49 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:59:50 07:59:50 buildlist: 07:59:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:59:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:59:50 07:59:50 clean: 07:59:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:59:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:59:50 07:59:50 python-clean: 07:59:50 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:59:50 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6f936af0c7-ice36-b482') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:59:50 warnings.warn( 07:59:50 running clean 07:59:50 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 07:59:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:59:51 07:59:51 python-clean: 07:59:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:59:51 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6f936af0c7-ice36-b482') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:59:51 warnings.warn( 07:59:51 running clean 07:59:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:59:51 07:59:51 python-clean: 07:59:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:59:51 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-574-6f936af0c7-ice36-b482') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:59:51 warnings.warn( 07:59:51 running clean 07:59:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 07:59:51 Deleting directory /home/omero/workspace/OMERO-build/src/target 07:59:51 07:59:51 build-scons: 07:59:51 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:59:51 07:59:51 build: 07:59:51 No sub-builds to iterate on 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:59:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:59:51 07:59:51 tools-init: 07:59:51 no-op 07:59:52 07:59:52 retrieve: 07:59:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:59:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:59:52 WARNING: An illegal reflective access operation has occurred 07:59:52 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 07:59:52 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 07:59:52 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 07:59:52 WARNING: All illegal access operations will be denied in a future release 08:00:33 08:00:33 prepare: 08:00:33 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:33 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:00:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:00:33 08:00:33 pre-compile: 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:00:33 08:00:33 compile: 08:00:33 no-op 08:00:33 08:00:33 package: 08:00:33 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:00:34 08:00:34 install: 08:00:34 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-574-6f936af0c7-ice36-b482 :: integration :: Fri Aug 01 07:59:51 UTC 2025 08:00:34 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:00:34 :: publishing :: omero#omero_client 08:00:34 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6f936af0c7-ice36-b482/omero_client-5.6.3-574-6f936af0c7-ice36-b482.jar 08:00:34 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-574-6f936af0c7-ice36-b482/omero_client-5.6.3-574-6f936af0c7-ice36-b482.xml 08:00:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:34 08:00:34 retrieve: 08:00:34 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:34 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:00:34 08:00:34 dist: 08:00:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:00:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:00:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:00:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:00:34 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:00:34 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 08:00:34 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:00:34 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:00:35 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:00:35 08:00:35 copy-licenses: 08:00:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:00:35 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:00:35 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:00:35 08:00:35 copy-history: 08:00:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:00:35 08:00:35 copy-etc: 08:00:35 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:00:35 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:00:35 08:00:35 copy-sql: 08:00:35 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:00:40 08:00:40 copy-server: 08:00:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 08:00:40 08:00:40 copy-client: 08:00:40 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:00:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 08:00:41 08:00:41 update-version: 08:00:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:00:41 08:00:41 create-workdirs: 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:00:41 08:00:41 copy-luts: 08:00:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:00:41 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:00:41 08:00:41 test-compile: 08:00:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:00:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:42 08:00:42 testng-init: 08:00:42 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:46 08:00:45,713 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 08:00:46 08:00:45,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - No custom configurators were discovered as a service. 08:00:46 08:00:45,716 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:00:46 08:00:45,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:00:46 08:00:45,719 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:00:46 08:00:45,720 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:00:46 08:00:45,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:00:46 08:00:45,720 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:00:46 08:00:45,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:00:46 08:00:45,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:00:46 08:00:45,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:00:46 08:00:45,724 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@89eab25 - Resource [logback.xml] occurs multiple times on the classpath. 08:00:46 08:00:45,724 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@89eab25 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:00:46 08:00:45,724 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@89eab25 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:00:46 08:00:45,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:00:46 08:00:45,919 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:00:46 08:00:45,938 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:00:46 08:00:45,940 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@700fec90 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:00:46 08:00:45,940 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@700fec90 - Please move "immediateFlush" property into the enclosing appender. 08:00:46 08:00:46,000 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@700fec90 - Setting the "immediateFlush" property of the enclosing appender to true 08:00:46 08:00:46,000 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:00:46 08:00:46,000 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:00:46 08:00:46,001 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:00:46 08:00:46,001 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:00:46 08:00:46,001 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:00:46 08:00:46,001 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:00:46 08:00:46,002 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@25fc72c6 - End of configuration. 08:00:46 08:00:46,004 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6b3decaa - Registering current configuration as safe fallback point 08:00:46 08:00:46,004 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6325a546 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 282 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:00:46 08:00:46 lifecycle.test-compile: 08:00:46 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:46 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:00:46 warning: [options] bootstrap class path not set in conjunction with -source 8 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:47 import omero.grid.RawAccessRequest; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:47 import omero.model.ImportJob; 08:00:47 ^ 08:00:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:00:47 import omero.model.ImportJobI; 08:00:47 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:00:48 IObject link = (IObject) linkClass.newInstance(); 08:00:48 ^ 08:00:48 where T is a type-variable: 08:00:48 T extends Object declared in class Class 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:00:48 T copy = (T) obj.getClass().newInstance(); 08:00:48 ^ 08:00:48 where T is a type-variable: 08:00:48 T extends Object declared in class Class 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:48 RawAccessRequest raw = new RawAccessRequest(); 08:00:48 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:48 RawAccessRequest raw = new RawAccessRequest(); 08:00:48 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:48 raw.repoUuid = legacy.root().getHash().getValue(); 08:00:48 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:48 raw.command = "rm"; 08:00:48 ^ 08:00:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:48 raw.args = Arrays.asList(path); 08:00:48 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:00:49 final IObject link = linkClass.newInstance(); 08:00:49 ^ 08:00:49 where T is a type-variable: 08:00:49 T extends Object declared in class Class 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:00:49 originalLink.setChild(annotationClass.newInstance()); 08:00:49 ^ 08:00:49 where T is a type-variable: 08:00:49 T extends Object declared in class Class 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:49 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:49 request.repoUuid = repo.root().getHash().getValue(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:49 request.command = "exists"; 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:49 request.args = Collections.singletonList(dirPath); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:00:49 final RawAccessRequest request = new RawAccessRequest(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:00:49 request.repoUuid = repo.root().getHash().getValue(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:00:49 request.command = "exists"; 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:00:49 request.args = Collections.singletonList(dirName); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:49 final ImportJob importJob = new ImportJobI(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:00:49 final ImportJob importJob = new ImportJobI(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:00:49 importJob.setImageName(omero.rtypes.rstring(name)); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:00:49 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:49 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:00:49 final String savedName = sent.getImageName().getValue().toString(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:00:49 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:00:49 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:00:49 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:00:49 ^ 08:00:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:00:49 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:00:49 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:00:50 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:00:50 table = svc.getTable(f.getId().getValue()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 RoiResult r = svc.findByImage(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:00:50 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:00:50 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:00:50 svc.getShapeStatsRestricted( 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:00:50 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:50 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:50 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:50 request.typesToIgnore = Collections.singletonList("Annotation"); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:00:50 request.typesToIgnore = Collections.singletonList("Annotation"); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 p2.setRelatedTo(p1); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:50 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 pixels1.setRelatedTo(pixels2); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:50 Pixels pixels = pixels1.getRelatedTo(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:50 Assert.assertNull(pixels1.getRelatedTo()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:00:50 pixels1.setRelatedTo(pixels2); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:50 Pixels pixels = pixels1.getRelatedTo(); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:00:50 Assert.assertNull(pixels1.getRelatedTo()); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:00:50 ^ 08:00:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:00:50 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:00:50 ^ 08:00:50 Note: Some input files use unchecked or unsafe operations. 08:00:50 Note: Recompile with -Xlint:unchecked for details. 08:00:50 88 warnings 08:00:50 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_821370003.tmp 08:00:50 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:00:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:51 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-574-6f936af0c7-ice36-b482 :: integration :: Fri Aug 01 08:00:42 UTC 2025 08:00:51 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:00:51 :: publishing :: omero#OmeroJava-test 08:00:51 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6f936af0c7-ice36-b482.jar 08:00:51 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-574-6f936af0c7-ice36-b482.xml 08:00:51 08:00:51 build-eclipse: 08:00:51 No sub-builds to iterate on 08:00:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:00:51 08:00:51 retrieve: 08:00:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:00:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:00:53 08:00:53 prepare: 08:00:53 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:00:54 08:00:54 release-clients: 08:00:54 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-574-6f936af0c7-ice36-b482.zip 08:01:00 08:01:00 release-zip: 08:01:00 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-574-6f936af0c7-ice36-b482.zip 08:01:11 08:01:11 BUILD SUCCESSFUL 08:01:11 Total time: 1 minute 23 seconds 08:01:11 ++ '[' -d .git ']' 08:01:11 ++ python3 ./build.py release-src 08:01:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:01:12 08:01:12 release-src-git: 08:01:12 Releasing openmicroscopy-5.6.3-574-6f936af0c7-ice36-b482 08:01:13 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6f936af0c7-ice36-b482.zip 08:01:13 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-574-6f936af0c7-ice36-b482-base.zip 08:01:15 08:01:15 BUILD SUCCESSFUL 08:01:15 Total time: 3 seconds 08:01:15 ++ echo BUILD_NUMBER=482 08:01:15 ++ echo OMERO_BRANCH=merge_ci 08:01:15 ++ git_info 08:01:15 +++ git rev-parse HEAD 08:01:15 ++ HEAD=6f936af0c716aa530aa4fab515e65eb477daa406 08:01:15 ++ git log --max-count=1 6f936af0c716aa530aa4fab515e65eb477daa406 08:01:15 ++ env 08:01:15 ++ sort 08:01:15 Archiving artifacts 08:01:39 Finished: SUCCESS