00:33:34 Started by upstream project "Trigger" build number 636 00:33:34 originally caused by: 00:33:34 Started by timer 00:33:34 Running as SYSTEM 00:33:34 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:33:34 The recommended git tool is: NONE 00:33:34 No credentials specified 00:33:34 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:33:34 Fetching changes from the remote Git repository 00:33:34 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:33:34 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:33:34 > git --version # timeout=10 00:33:34 > git --version # 'git version 2.43.5' 00:33:34 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:33:42 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:33:42 Checking out Revision 9075473effd07e035a62d819daff81e62722369c (origin/merge_ci) 00:33:42 > git config core.sparsecheckout # timeout=10 00:33:42 > git checkout -f 9075473effd07e035a62d819daff81e62722369c # timeout=10 00:33:44 Commit message: "Add version.properties to etc/omero.properties" 00:33:44 > git rev-list --no-walk c831dd3cc96161824e12fa416e2010a4e409bb23 # timeout=10 00:33:44 Cleaning workspace 00:33:44 > git rev-parse --verify HEAD # timeout=10 00:33:44 Resetting working tree 00:33:44 > git reset --hard # timeout=10 00:33:44 > git clean -fdx # timeout=10 00:33:44 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 531 00:33:44 [OMERO-build] $ /bin/bash -xe /tmp/jenkins9982201282202192231.sh 00:33:44 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 00:33:44 + cd src 00:33:44 + export OMERO_BRANCH=merge_ci 00:33:44 + OMERO_BRANCH=merge_ci 00:33:44 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:33:44 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:33:44 + source /home/omero/settings.env 00:33:45 ++ OMERO_DB_HOST=pg 00:33:45 ++ OMERO_DB_USER=postgres 00:33:45 ++ OMERO_DB_PASS= 00:33:45 ++ OMERO_ROOT_PASS=omero 00:33:45 ++ OMERO_DATA_DIR=/OMERO 00:33:45 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:33:45 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:33:48 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:33:48 Collecting zeroc-ice==3.6.5 00:33:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:33:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 15.2 MB/s eta 0:00:00 00:33:51 Installing collected packages: zeroc-ice 00:33:52 Successfully installed zeroc-ice-3.6.5 00:33:52 00:33:52 [notice] A new release of pip available: 22.3.1 -> 25.2 00:33:52 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:33:52 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:33:52 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:33:52 Collecting setuptools<66 00:33:52 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:33:52 Collecting omero-py 00:33:53 Using cached omero_py-5.21.1-py3-none-any.whl (2.8 MB) 00:33:53 Collecting appdirs 00:33:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:33:53 Collecting future 00:33:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:33:54 Collecting numpy<3 00:33:54 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:33:55 Collecting Pillow>=10.0.0 00:33:55 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 00:33:55 Collecting PyYAML 00:33:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:33:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:33:55 Collecting requests 00:33:55 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:33:56 Collecting portalocker 00:33:56 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:33:56 Collecting charset_normalizer<4,>=2 00:33:56 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) 00:33:56 Collecting idna<4,>=2.5 00:33:56 Using cached idna-3.10-py3-none-any.whl (70 kB) 00:33:56 Collecting urllib3<3,>=1.21.1 00:33:56 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 00:33:56 Collecting certifi>=2017.4.17 00:33:56 Using cached certifi-2025.8.3-py3-none-any.whl (161 kB) 00:33:56 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:33:57 Attempting uninstall: setuptools 00:33:57 Found existing installation: setuptools 65.5.1 00:33:57 Uninstalling setuptools-65.5.1: 00:33:57 Successfully uninstalled setuptools-65.5.1 00:34:02 Successfully installed Pillow-11.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.8.3 charset_normalizer-3.4.3 future-1.0.0 idna-3.10 numpy-2.3.3 omero-py-5.21.1 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0 00:34:02 00:34:02 [notice] A new release of pip available: 22.3.1 -> 25.2 00:34:02 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:34:02 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:34:02 ++ deactivate nondestructive 00:34:02 ++ '[' -n '' ']' 00:34:02 ++ '[' -n '' ']' 00:34:02 ++ hash -r 00:34:02 ++ '[' -n '' ']' 00:34:02 ++ unset VIRTUAL_ENV 00:34:02 ++ unset VIRTUAL_ENV_PROMPT 00:34:02 ++ '[' '!' nondestructive = nondestructive ']' 00:34:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:34:02 ++ export VIRTUAL_ENV 00:34:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:02 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:34:02 ++ export PATH 00:34:02 ++ '[' -n '' ']' 00:34:02 ++ '[' -z '' ']' 00:34:02 ++ _OLD_VIRTUAL_PS1= 00:34:02 ++ PS1='(omero-virtualenv) ' 00:34:02 ++ export PS1 00:34:02 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:34:02 ++ export VIRTUAL_ENV_PROMPT 00:34:02 ++ hash -r 00:34:02 + source docs/hudson/OMERO.sh 00:34:02 ++ set -e 00:34:02 ++ set -u 00:34:02 ++ set -x 00:34:02 ++ source docs/hudson/functions.sh 00:34:02 ++ echo Building merge_ci 00:34:02 Building merge_ci 00:34:02 ++ python3 ./build.py build-dev release-all 00:34:02 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:34:03 00:34:03 check-ivy: 00:34:03 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:34:03 Created dir: /home/omero/workspace/OMERO-build/src/target 00:34:03 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:34:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:34:03 00:34:03 build-scons: 00:34:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:34:03 No sub-builds to iterate on 00:34:04 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:34:04 00:34:04 buildlist: 00:34:04 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:34:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:34:04 00:34:04 clean: 00:34:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:04 00:34:04 python-clean: 00:34:04 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:04 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-9075473eff-ice36-b538') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:04 warnings.warn( 00:34:04 running clean 00:34:04 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:34:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:34:05 00:34:05 python-clean: 00:34:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:05 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-9075473eff-ice36-b538') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:05 warnings.warn( 00:34:05 running clean 00:34:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:34:05 00:34:05 python-clean: 00:34:05 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:34:05 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-9075473eff-ice36-b538') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:34:05 warnings.warn( 00:34:05 running clean 00:34:05 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:34:05 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:34:05 00:34:05 build-scons: 00:34:05 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:34:05 00:34:05 build: 00:34:05 No sub-builds to iterate on 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:34:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:34:05 00:34:05 tools-init: 00:34:05 no-op 00:34:06 00:34:06 retrieve: 00:34:06 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:34:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:34:06 WARNING: An illegal reflective access operation has occurred 00:34:06 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:34:06 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:34:06 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:34:06 WARNING: All illegal access operations will be denied in a future release 00:35:08 00:35:08 prepare: 00:35:08 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:35:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:35:08 00:35:08 pre-compile: 00:35:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:35:08 00:35:08 compile: 00:35:08 no-op 00:35:08 00:35:08 package: 00:35:08 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:35:09 00:35:09 install: 00:35:09 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-9075473eff-ice36-b538 :: integration :: Wed Oct 01 00:34:05 UTC 2025 00:35:09 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:35:09 :: publishing :: omero#omero_client 00:35:09 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-9075473eff-ice36-b538/omero_client-5.6.3-576-9075473eff-ice36-b538.jar 00:35:09 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-9075473eff-ice36-b538/omero_client-5.6.3-576-9075473eff-ice36-b538.xml 00:35:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:09 00:35:09 retrieve: 00:35:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:10 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:35:10 00:35:10 dist: 00:35:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:35:10 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:35:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:10 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:35:10 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:35:10 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:35:10 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:35:10 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:35:10 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:10 00:35:10 copy-licenses: 00:35:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:10 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:35:10 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:35:10 00:35:10 copy-history: 00:35:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:35:10 00:35:10 copy-etc: 00:35:10 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:35:10 00:35:10 copy-sql: 00:35:10 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:35:17 00:35:17 copy-server: 00:35:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:35:17 00:35:17 copy-client: 00:35:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:35:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:35:18 00:35:18 update-version: 00:35:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:35:18 00:35:18 create-workdirs: 00:35:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:35:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:35:18 00:35:18 copy-luts: 00:35:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:18 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:35:18 00:35:18 test-compile: 00:35:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:35:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:19 00:35:19 testng-init: 00:35:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:22 00:35:22,328 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:35:22 00:35:22,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - No custom configurators were discovered as a service. 00:35:22 00:35:22,330 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:22 00:35:22,334 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:35:22 00:35:22,334 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:35:22 00:35:22,335 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:35:22 00:35:22,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:35:22 00:35:22,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:22 00:35:22,337 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:35:22 00:35:22,337 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:35:22 00:35:22,338 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:22 00:35:22,339 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@566bea82 - Resource [logback.xml] occurs multiple times on the classpath. 00:35:22 00:35:22,339 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@566bea82 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:35:22 00:35:22,339 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@566bea82 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:35:22 00:35:22,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:35:22 00:35:22,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:35:22 00:35:22,561 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:35:22 00:35:22,563 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b28d787 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:35:22 00:35:22,563 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b28d787 - Please move "immediateFlush" property into the enclosing appender. 00:35:22 00:35:22,623 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@4b28d787 - Setting the "immediateFlush" property of the enclosing appender to true 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:35:22 00:35:22,624 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:35:22 00:35:22,625 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@68284cf9 - End of configuration. 00:35:22 00:35:22,627 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6903e134 - Registering current configuration as safe fallback point 00:35:22 00:35:22,627 |-INFO in ch.qos.logback.classic.util.ContextInitializer@617c1ac2 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 290 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:35:22 00:35:22 lifecycle.test-compile: 00:35:22 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:22 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:35:23 warning: [options] bootstrap class path not set in conjunction with -source 8 00:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:24 import omero.grid.RawAccessRequest; 00:35:24 ^ 00:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:24 import omero.grid.RawAccessRequest; 00:35:24 ^ 00:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:24 import omero.grid.RawAccessRequest; 00:35:24 ^ 00:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:24 import omero.model.ImportJob; 00:35:24 ^ 00:35:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:24 import omero.model.ImportJobI; 00:35:24 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:35:25 IObject link = (IObject) linkClass.newInstance(); 00:35:25 ^ 00:35:25 where T is a type-variable: 00:35:25 T extends Object declared in class Class 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:35:25 T copy = (T) obj.getClass().newInstance(); 00:35:25 ^ 00:35:25 where T is a type-variable: 00:35:25 T extends Object declared in class Class 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:25 RawAccessRequest raw = new RawAccessRequest(); 00:35:25 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:25 RawAccessRequest raw = new RawAccessRequest(); 00:35:25 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:25 raw.repoUuid = legacy.root().getHash().getValue(); 00:35:25 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:25 raw.command = "rm"; 00:35:25 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:25 raw.args = Arrays.asList(path); 00:35:25 ^ 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:35:25 final IObject link = linkClass.newInstance(); 00:35:25 ^ 00:35:25 where T is a type-variable: 00:35:25 T extends Object declared in class Class 00:35:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:35:25 originalLink.setChild(annotationClass.newInstance()); 00:35:25 ^ 00:35:25 where T is a type-variable: 00:35:25 T extends Object declared in class Class 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:26 final RawAccessRequest request = new RawAccessRequest(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:26 final RawAccessRequest request = new RawAccessRequest(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:26 request.repoUuid = repo.root().getHash().getValue(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:26 request.command = "exists"; 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:26 request.args = Collections.singletonList(dirPath); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:26 final RawAccessRequest request = new RawAccessRequest(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:35:26 final RawAccessRequest request = new RawAccessRequest(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:35:26 request.repoUuid = repo.root().getHash().getValue(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:35:26 request.command = "exists"; 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:35:26 request.args = Collections.singletonList(dirName); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:26 final ImportJob importJob = new ImportJobI(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:35:26 final ImportJob importJob = new ImportJobI(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:35:26 importJob.setImageName(omero.rtypes.rstring(name)); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:35:26 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:26 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:26 final String savedName = sent.getImageName().getValue().toString(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:26 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:35:26 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:35:26 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:35:26 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:35:26 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:35:26 table = svc.getTable(f.getId().getValue()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 RoiResult r = svc.findByImage(image.getId().getValue(), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:35:26 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:26 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:35:26 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:35:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:35:26 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:26 svc.getShapeStatsRestricted( 00:35:26 ^ 00:35:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:35:26 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:35:26 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:27 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:27 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:27 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:35:27 request.typesToIgnore = Collections.singletonList("Annotation"); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:27 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:27 p2.setRelatedTo(p1); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:27 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:27 pixels1.setRelatedTo(pixels2); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:27 Pixels pixels = pixels1.getRelatedTo(); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:27 Assert.assertNull(pixels1.getRelatedTo()); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:35:27 pixels1.setRelatedTo(pixels2); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:27 Pixels pixels = pixels1.getRelatedTo(); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:35:27 Assert.assertNull(pixels1.getRelatedTo()); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:35:27 ^ 00:35:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:35:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:35:27 ^ 00:35:27 Note: Some input files use unchecked or unsafe operations. 00:35:27 Note: Recompile with -Xlint:unchecked for details. 00:35:27 88 warnings 00:35:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1853117281.tmp 00:35:27 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:35:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:27 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-9075473eff-ice36-b538 :: integration :: Wed Oct 01 00:35:18 UTC 2025 00:35:27 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:35:27 :: publishing :: omero#OmeroJava-test 00:35:27 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-9075473eff-ice36-b538.jar 00:35:27 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-9075473eff-ice36-b538.xml 00:35:27 00:35:27 build-eclipse: 00:35:27 No sub-builds to iterate on 00:35:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:35:27 00:35:27 retrieve: 00:35:27 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:35:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:35:30 00:35:30 prepare: 00:35:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:35:31 00:35:31 release-clients: 00:35:31 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-9075473eff-ice36-b538.zip 00:35:36 00:35:36 release-zip: 00:35:36 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-9075473eff-ice36-b538.zip 00:35:46 00:35:46 BUILD SUCCESSFUL 00:35:46 Total time: 1 minute 43 seconds 00:35:46 ++ '[' -d .git ']' 00:35:46 ++ python3 ./build.py release-src 00:35:46 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:35:46 00:35:46 release-src-git: 00:35:46 Releasing openmicroscopy-5.6.3-576-9075473eff-ice36-b538 00:35:48 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-9075473eff-ice36-b538.zip 00:35:48 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-9075473eff-ice36-b538-base.zip 00:35:49 00:35:49 BUILD SUCCESSFUL 00:35:49 Total time: 3 seconds 00:35:49 ++ echo BUILD_NUMBER=538 00:35:49 ++ echo OMERO_BRANCH=merge_ci 00:35:49 ++ git_info 00:35:49 +++ git rev-parse HEAD 00:35:49 ++ HEAD=9075473effd07e035a62d819daff81e62722369c 00:35:49 ++ git log --max-count=1 9075473effd07e035a62d819daff81e62722369c 00:35:49 ++ env 00:35:49 ++ sort 00:35:49 Archiving artifacts 00:36:13 Finished: SUCCESS