07:11:24 Started by upstream project "Trigger" build number 74 07:11:24 originally caused by: 07:11:24 Started by user devspace 07:11:24 Running as SYSTEM 07:11:24 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 07:11:24 The recommended git tool is: NONE 07:11:24 No credentials specified 07:11:24 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 07:11:24 Fetching changes from the remote Git repository 07:11:24 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 07:11:24 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 07:11:24 > git --version # timeout=10 07:11:24 > git --version # 'git version 2.39.3' 07:11:24 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 07:11:27 > git rev-parse origin/merge_ci^{commit} # timeout=10 07:11:27 Checking out Revision 7329b8bfb3714568d39e991ee292c344667d59c0 (origin/merge_ci) 07:11:27 > git config core.sparsecheckout # timeout=10 07:11:27 > git checkout -f 7329b8bfb3714568d39e991ee292c344667d59c0 # timeout=10 07:11:27 Commit message: "Add version.properties to etc/omero.properties" 07:11:27 > git rev-list --no-walk 436015b77305b2161a0dff36bf695a4ce98321df # timeout=10 07:11:27 Cleaning workspace 07:11:27 > git rev-parse --verify HEAD # timeout=10 07:11:27 Resetting working tree 07:11:27 > git reset --hard # timeout=10 07:11:27 > git clean -fdx # timeout=10 07:11:28 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 64 07:11:28 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7014401870328499346.sh 07:11:28 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 07:11:28 + cd src 07:11:28 + export OMERO_BRANCH=merge_ci 07:11:28 + OMERO_BRANCH=merge_ci 07:11:28 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 07:11:28 + source /home/omero/settings.env 07:11:28 ++ OMERO_DB_HOST=pg 07:11:28 ++ OMERO_DB_USER=postgres 07:11:28 ++ OMERO_DB_PASS= 07:11:28 ++ OMERO_ROOT_PASS=omero 07:11:28 ++ OMERO_DATA_DIR=/OMERO 07:11:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:11:28 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 07:11:30 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 07:11:31 Collecting zeroc-ice==3.6.5 07:11:32 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 07:11:34 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 07:11:34 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 07:11:34 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 07:11:35 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (69.5.1) 07:11:36 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.2) 07:11:36 Requirement already satisfied: numpy in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 07:11:36 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 07:11:36 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 07:11:36 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 07:11:36 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 07:11:36 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 07:11:36 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 07:11:36 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 07:11:36 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 07:11:36 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 07:11:36 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 07:11:36 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 07:11:36 WARNING: You are using pip version 21.2.3; however, version 24.0 is available. 07:11:36 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 07:11:36 + source docs/hudson/OMERO.sh 07:11:36 ++ set -e 07:11:36 ++ set -u 07:11:36 ++ set -x 07:11:36 ++ source docs/hudson/functions.sh 07:11:36 ++ echo Building merge_ci 07:11:36 Building merge_ci 07:11:36 ++ python3 ./build.py build-dev release-all 07:11:36 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 07:11:37 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 07:11:37 07:11:37 check-ivy: 07:11:37 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 07:11:37 Created dir: /home/omero/workspace/OMERO-build/src/target 07:11:38 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:11:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:11:39 07:11:39 build-scons: 07:11:39 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:11:39 No sub-builds to iterate on 07:11:40 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:11:40 07:11:40 buildlist: 07:11:40 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:11:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:11:40 07:11:40 clean: 07:11:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:11:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:11:41 07:11:41 python-clean: 07:11:41 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:11:41 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:11:41 warnings.warn( 07:11:41 running clean 07:11:41 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 07:11:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:11:41 07:11:41 python-clean: 07:11:41 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:11:41 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:11:41 warnings.warn( 07:11:41 running clean 07:11:41 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 07:11:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:11:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:11:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:11:41 07:11:41 python-clean: 07:11:41 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:11:41 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-467-7329b8bfb3-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:11:41 warnings.warn( 07:11:41 running clean 07:11:41 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 07:11:41 Deleting directory /home/omero/workspace/OMERO-build/src/target 07:11:42 07:11:42 build-scons: 07:11:42 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:11:42 07:11:42 build: 07:11:42 No sub-builds to iterate on 07:11:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:11:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:11:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:11:42 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:11:42 07:11:42 tools-init: 07:11:42 no-op 07:11:42 07:11:42 retrieve: 07:11:42 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:11:42 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:12:40 07:12:40 prepare: 07:12:40 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:12:40 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:12:40 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:12:40 07:12:40 pre-compile: 07:12:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:12:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:12:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:12:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:12:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:12:40 07:12:40 compile: 07:12:40 no-op 07:12:40 07:12:40 package: 07:12:40 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 07:12:41 07:12:41 install: 07:12:41 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-467-7329b8bfb3-ice36 :: integration :: Fri May 17 07:11:42 UTC 2024 07:12:41 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 07:12:41 :: publishing :: omero#omero_client 07:12:41 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-7329b8bfb3-ice36/omero_client-5.6.3-467-7329b8bfb3-ice36.jar 07:12:41 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-467-7329b8bfb3-ice36/omero_client-5.6.3-467-7329b8bfb3-ice36.xml 07:12:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:12:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:12:41 07:12:41 retrieve: 07:12:41 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:12:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:12:42 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:12:42 07:12:42 dist: 07:12:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 07:12:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 07:12:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 07:12:42 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 07:12:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 07:12:42 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 07:12:42 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 07:12:42 Entering /home/omero/workspace/OMERO-build/src/components/tests... 07:12:42 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 07:12:42 07:12:42 copy-licenses: 07:12:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 07:12:42 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 07:12:42 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 07:12:43 07:12:43 copy-history: 07:12:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 07:12:43 07:12:43 copy-etc: 07:12:43 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 07:12:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 07:12:43 07:12:43 copy-sql: 07:12:43 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 07:13:03 07:13:03 copy-server: 07:13:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 07:13:03 07:13:03 copy-client: 07:13:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 07:13:04 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 07:13:05 07:13:05 update-version: 07:13:05 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 07:13:05 07:13:05 create-workdirs: 07:13:05 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 07:13:05 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 07:13:05 07:13:05 copy-luts: 07:13:05 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 07:13:05 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 07:13:05 07:13:05 test-compile: 07:13:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:13:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:13:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:13:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:13:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:13:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:13:06 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 07:13:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:13:06 07:13:06 testng-init: 07:13:06 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:13:06 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:13:10 07:13:09,835 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 07:13:10 07:13:09,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - No custom configurators were discovered as a service. 07:13:10 07:13:09,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 07:13:10 07:13:09,842 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 07:13:10 07:13:09,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 07:13:10 07:13:09,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 07:13:10 07:13:09,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 07:13:10 07:13:09,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 07:13:10 07:13:09,845 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 07:13:10 07:13:09,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 07:13:10 07:13:09,846 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 07:13:10 07:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs multiple times on the classpath. 07:13:10 07:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 07:13:10 07:13:09,847 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@39b266b2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 07:13:10 07:13:10,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 07:13:10 07:13:10,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 07:13:10 07:13:10,094 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 07:13:10 07:13:10,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 07:13:10 07:13:10,097 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Please move "immediateFlush" property into the enclosing appender. 07:13:10 07:13:10,166 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@5ea7ad41 - Setting the "immediateFlush" property of the enclosing appender to true 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 07:13:10 07:13:10,167 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 07:13:10 07:13:10,168 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3dc70c5a - End of configuration. 07:13:10 07:13:10,170 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48d46169 - Registering current configuration as safe fallback point 07:13:10 07:13:10,170 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4046b407 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 325 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 07:13:10 07:13:10 lifecycle.test-compile: 07:13:10 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:13:10 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:13:10 warning: [options] bootstrap class path not set in conjunction with -source 8 07:13:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:13 import omero.grid.RawAccessRequest; 07:13:13 ^ 07:13:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:13 import omero.grid.RawAccessRequest; 07:13:13 ^ 07:13:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:13 import omero.grid.RawAccessRequest; 07:13:13 ^ 07:13:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:13 import omero.model.ImportJob; 07:13:13 ^ 07:13:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 07:13:13 import omero.model.ImportJobI; 07:13:13 ^ 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 07:13:14 IObject link = (IObject) linkClass.newInstance(); 07:13:14 ^ 07:13:14 where T is a type-variable: 07:13:14 T extends Object declared in class Class 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 07:13:14 T copy = (T) obj.getClass().newInstance(); 07:13:14 ^ 07:13:14 where T is a type-variable: 07:13:14 T extends Object declared in class Class 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:14 RawAccessRequest raw = new RawAccessRequest(); 07:13:14 ^ 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:14 RawAccessRequest raw = new RawAccessRequest(); 07:13:14 ^ 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:13:14 raw.repoUuid = legacy.root().getHash().getValue(); 07:13:14 ^ 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 07:13:14 raw.command = "rm"; 07:13:14 ^ 07:13:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 07:13:14 raw.args = Arrays.asList(path); 07:13:14 ^ 07:13:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 07:13:15 final IObject link = linkClass.newInstance(); 07:13:15 ^ 07:13:15 where T is a type-variable: 07:13:15 T extends Object declared in class Class 07:13:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 07:13:15 originalLink.setChild(annotationClass.newInstance()); 07:13:15 ^ 07:13:15 where T is a type-variable: 07:13:15 T extends Object declared in class Class 07:13:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:13:15 RoiResult r = svc.findByImage(id, new RoiOptions()); 07:13:15 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:16 final RawAccessRequest request = new RawAccessRequest(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:16 final RawAccessRequest request = new RawAccessRequest(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:13:16 request.repoUuid = repo.root().getHash().getValue(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 07:13:16 request.command = "exists"; 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 07:13:16 request.args = Collections.singletonList(dirPath); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:16 final RawAccessRequest request = new RawAccessRequest(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:13:16 final RawAccessRequest request = new RawAccessRequest(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:13:16 request.repoUuid = repo.root().getHash().getValue(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 07:13:16 request.command = "exists"; 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 07:13:16 request.args = Collections.singletonList(dirName); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:16 final ImportJob importJob = new ImportJobI(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 07:13:16 final ImportJob importJob = new ImportJobI(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 07:13:16 importJob.setImageName(omero.rtypes.rstring(name)); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 07:13:16 importJob.setImageDescription(omero.rtypes.rstring(desc)); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:16 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:16 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 07:13:16 final String savedName = sent.getImageName().getValue().toString(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 07:13:16 final String savedDesc = sent.getImageDescription().getValue().toString(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:16 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 07:13:16 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 07:13:16 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 07:13:16 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 07:13:16 ^ 07:13:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:13:16 RoiResult r = svc.findByImage(image.getId().getValue(), 07:13:16 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 07:13:17 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 07:13:17 table = svc.getTable(f.getId().getValue()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 RoiResult r = svc.findByImage(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 07:13:17 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 07:13:17 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 07:13:17 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 07:13:17 svc.getShapeStatsRestricted( 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 07:13:17 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:13:17 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:13:17 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:13:17 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:13:17 request.typesToIgnore = Collections.singletonList("Annotation"); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:13:17 request.typesToIgnore = Collections.singletonList("Annotation"); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:13:17 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:13:17 p2.setRelatedTo(p1); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:13:17 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:13:17 pixels1.setRelatedTo(pixels2); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:13:17 Pixels pixels = pixels1.getRelatedTo(); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:13:17 Assert.assertNull(pixels1.getRelatedTo()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:13:17 pixels1.setRelatedTo(pixels2); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:13:17 Pixels pixels = pixels1.getRelatedTo(); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:13:17 Assert.assertNull(pixels1.getRelatedTo()); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:13:17 ^ 07:13:17 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:13:17 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:13:17 ^ 07:13:17 Note: Some input files use unchecked or unsafe operations. 07:13:17 Note: Recompile with -Xlint:unchecked for details. 07:13:17 88 warnings 07:13:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1594579200.tmp 07:13:17 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 07:13:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:13:18 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-467-7329b8bfb3-ice36 :: integration :: Fri May 17 07:13:06 UTC 2024 07:13:18 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 07:13:18 :: publishing :: omero#OmeroJava-test 07:13:18 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-7329b8bfb3-ice36.jar 07:13:18 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-467-7329b8bfb3-ice36.xml 07:13:18 07:13:18 build-eclipse: 07:13:18 No sub-builds to iterate on 07:13:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:13:18 07:13:18 retrieve: 07:13:18 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 07:13:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:13:21 07:13:21 prepare: 07:13:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 07:13:23 07:13:23 release-clients: 07:13:23 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-467-7329b8bfb3-ice36.zip 07:13:29 07:13:29 release-zip: 07:13:29 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-467-7329b8bfb3-ice36.zip 07:13:42 07:13:42 BUILD SUCCESSFUL 07:13:42 Total time: 2 minutes 5 seconds 07:13:42 ++ '[' -d .git ']' 07:13:42 ++ python3 ./build.py release-src 07:13:42 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 07:13:42 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 07:13:43 07:13:43 release-src-git: 07:13:43 Releasing openmicroscopy-5.6.3-467-7329b8bfb3-ice36 07:13:45 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-7329b8bfb3-ice36.zip 07:13:45 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-467-7329b8bfb3-ice36-base.zip 07:13:47 07:13:47 BUILD SUCCESSFUL 07:13:47 Total time: 4 seconds 07:13:47 ++ echo BUILD_NUMBER=65 07:13:47 ++ echo OMERO_BRANCH=merge_ci 07:13:47 ++ git_info 07:13:47 +++ git rev-parse HEAD 07:13:47 ++ HEAD=7329b8bfb3714568d39e991ee292c344667d59c0 07:13:47 ++ git log --max-count=1 7329b8bfb3714568d39e991ee292c344667d59c0 07:13:47 ++ env 07:13:47 ++ sort 07:13:47 Archiving artifacts 07:14:15 Finished: SUCCESS