01:44:42 Started by upstream project "Trigger" build number 111 01:44:42 originally caused by: 01:44:42 Started by timer 01:44:42 Running as SYSTEM 01:44:42 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:44:42 The recommended git tool is: NONE 01:44:42 No credentials specified 01:44:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:44:42 Fetching changes from the remote Git repository 01:44:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:44:42 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:44:42 > git --version # timeout=10 01:44:42 > git --version # 'git version 2.39.3' 01:44:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:44:46 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:44:46 Checking out Revision 1c6eaf1a3844e007c354084ae02cb4982564d791 (origin/merge_ci) 01:44:46 > git config core.sparsecheckout # timeout=10 01:44:46 > git checkout -f 1c6eaf1a3844e007c354084ae02cb4982564d791 # timeout=10 01:44:46 Commit message: "Add version.properties to etc/omero.properties" 01:44:46 > git rev-list --no-walk 80a028c3ae0ce483215ab4f20e49bcfc483e63f7 # timeout=10 01:44:46 Cleaning workspace 01:44:46 > git rev-parse --verify HEAD # timeout=10 01:44:46 Resetting working tree 01:44:46 > git reset --hard # timeout=10 01:44:46 > git clean -fdx # timeout=10 01:44:46 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 98 01:44:46 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14018648978743195974.sh 01:44:46 + mv omero-scripts/dist/omero_scripts-5.8.3.dev0.tar.gz . 01:44:46 + cd src 01:44:46 + export OMERO_BRANCH=merge_ci 01:44:46 + OMERO_BRANCH=merge_ci 01:44:46 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:44:46 + source /home/omero/settings.env 01:44:46 ++ OMERO_DB_HOST=pg 01:44:46 ++ OMERO_DB_USER=postgres 01:44:46 ++ OMERO_DB_PASS= 01:44:46 ++ OMERO_ROOT_PASS=omero 01:44:46 ++ OMERO_DATA_DIR=/OMERO 01:44:46 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:44:46 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:44:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 01:44:51 Collecting zeroc-ice==3.6.5 01:44:52 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 01:44:54 WARNING: You are using pip version 21.2.3; however, version 24.1 is available. 01:44:54 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:44:54 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 01:44:54 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (70.1.0) 01:44:55 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.3) 01:44:55 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 01:44:55 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 01:44:55 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 01:44:55 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 01:44:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 01:44:55 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 01:44:55 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 01:44:55 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 01:44:55 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 01:44:55 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 01:44:55 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 01:44:55 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 01:44:55 WARNING: You are using pip version 21.2.3; however, version 24.1 is available. 01:44:55 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 01:44:55 + source docs/hudson/OMERO.sh 01:44:55 ++ set -e 01:44:55 ++ set -u 01:44:55 ++ set -x 01:44:55 ++ source docs/hudson/functions.sh 01:44:55 ++ echo Building merge_ci 01:44:55 Building merge_ci 01:44:55 ++ python3 ./build.py build-dev release-all 01:44:55 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:44:56 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:44:57 01:44:57 check-ivy: 01:44:57 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:44:57 Created dir: /home/omero/workspace/OMERO-build/src/target 01:44:58 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:44:58 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:44:58 01:44:58 build-scons: 01:44:58 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:44:59 No sub-builds to iterate on 01:44:59 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:44:59 01:44:59 buildlist: 01:44:59 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:44:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:44:59 01:44:59 clean: 01:44:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:44:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:44:59 01:44:59 python-clean: 01:44:59 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:44:59 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:44:59 warnings.warn( 01:44:59 running clean 01:45:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:45:00 01:45:00 python-clean: 01:45:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:45:00 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:45:00 warnings.warn( 01:45:00 running clean 01:45:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:00 01:45:00 python-clean: 01:45:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:45:00 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-474-1c6eaf1a38-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:45:00 warnings.warn( 01:45:00 running clean 01:45:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:45:00 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:45:00 01:45:00 build-scons: 01:45:00 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:45:00 01:45:00 build: 01:45:00 No sub-builds to iterate on 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:45:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:00 01:45:00 tools-init: 01:45:00 no-op 01:45:01 01:45:01 retrieve: 01:45:01 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:45:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:19 01:45:19 prepare: 01:45:19 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:45:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:45:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:45:19 01:45:19 pre-compile: 01:45:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:45:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:45:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:45:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:45:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:45:19 01:45:19 compile: 01:45:19 no-op 01:45:19 01:45:19 package: 01:45:19 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:45:20 01:45:20 install: 01:45:20 :: delivering :: omero#omero_client;working@2fed98c19e20 :: 5.6.3-474-1c6eaf1a38-ice36 :: integration :: Sat Jun 22 01:45:00 UTC 2024 01:45:20 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:45:20 :: publishing :: omero#omero_client 01:45:20 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-474-1c6eaf1a38-ice36/omero_client-5.6.3-474-1c6eaf1a38-ice36.jar 01:45:20 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-474-1c6eaf1a38-ice36/omero_client-5.6.3-474-1c6eaf1a38-ice36.xml 01:45:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:20 01:45:20 retrieve: 01:45:20 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:45:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:22 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:45:22 01:45:22 dist: 01:45:22 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:45:22 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:45:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:45:22 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.3.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:45:22 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:45:22 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 01:45:22 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:45:22 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:45:22 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:45:22 01:45:22 copy-licenses: 01:45:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:45:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:45:22 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:45:23 01:45:23 copy-history: 01:45:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:45:23 01:45:23 copy-etc: 01:45:23 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:45:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:45:23 01:45:23 copy-sql: 01:45:23 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:45:41 01:45:41 copy-server: 01:45:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 01:45:41 01:45:41 copy-client: 01:45:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:45:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 01:45:43 01:45:43 update-version: 01:45:43 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:45:43 01:45:43 create-workdirs: 01:45:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:45:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:45:43 01:45:43 copy-luts: 01:45:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:45:43 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:45:44 01:45:44 test-compile: 01:45:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:45:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:44 01:45:44 testng-init: 01:45:44 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:45:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:48 01:45:48,087 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 01:45:48 01:45:48,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - No custom configurators were discovered as a service. 01:45:48 01:45:48,091 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:45:48 01:45:48,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:45:48 01:45:48,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:45:48 01:45:48,095 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:45:48 01:45:48,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:45:48 01:45:48,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:45:48 01:45:48,098 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:45:48 01:45:48,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:45:48 01:45:48,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:45:48 01:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs multiple times on the classpath. 01:45:48 01:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:45:48 01:45:48,099 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@272543a2 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:45:48 01:45:48,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:45:48 01:45:48,338 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:45:48 01:45:48,359 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:45:48 01:45:48,361 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:45:48 01:45:48,361 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - Please move "immediateFlush" property into the enclosing appender. 01:45:48 01:45:48,430 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@2687bf90 - Setting the "immediateFlush" property of the enclosing appender to true 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:45:48 01:45:48,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:45:48 01:45:48,432 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@57eb5324 - End of configuration. 01:45:48 01:45:48,434 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@170a158d - Registering current configuration as safe fallback point 01:45:48 01:45:48,434 |-INFO in ch.qos.logback.classic.util.ContextInitializer@218c25b9 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 336 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:45:48 01:45:48 lifecycle.test-compile: 01:45:48 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:45:48 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:45:48 warning: [options] bootstrap class path not set in conjunction with -source 8 01:45:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:52 import omero.grid.RawAccessRequest; 01:45:52 ^ 01:45:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:52 import omero.grid.RawAccessRequest; 01:45:52 ^ 01:45:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:52 import omero.grid.RawAccessRequest; 01:45:52 ^ 01:45:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:52 import omero.model.ImportJob; 01:45:52 ^ 01:45:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:45:52 import omero.model.ImportJobI; 01:45:52 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:45:53 IObject link = (IObject) linkClass.newInstance(); 01:45:53 ^ 01:45:53 where T is a type-variable: 01:45:53 T extends Object declared in class Class 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:45:53 T copy = (T) obj.getClass().newInstance(); 01:45:53 ^ 01:45:53 where T is a type-variable: 01:45:53 T extends Object declared in class Class 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:53 RawAccessRequest raw = new RawAccessRequest(); 01:45:53 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:53 RawAccessRequest raw = new RawAccessRequest(); 01:45:53 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:45:53 raw.repoUuid = legacy.root().getHash().getValue(); 01:45:53 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:45:53 raw.command = "rm"; 01:45:53 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:45:53 raw.args = Arrays.asList(path); 01:45:53 ^ 01:45:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:45:53 final IObject link = linkClass.newInstance(); 01:45:53 ^ 01:45:53 where T is a type-variable: 01:45:53 T extends Object declared in class Class 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:45:54 originalLink.setChild(annotationClass.newInstance()); 01:45:54 ^ 01:45:54 where T is a type-variable: 01:45:54 T extends Object declared in class Class 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:45:54 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:54 final RawAccessRequest request = new RawAccessRequest(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:54 final RawAccessRequest request = new RawAccessRequest(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:45:54 request.repoUuid = repo.root().getHash().getValue(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:45:54 request.command = "exists"; 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:45:54 request.args = Collections.singletonList(dirPath); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:54 final RawAccessRequest request = new RawAccessRequest(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:45:54 final RawAccessRequest request = new RawAccessRequest(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:45:54 request.repoUuid = repo.root().getHash().getValue(); 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:45:54 request.command = "exists"; 01:45:54 ^ 01:45:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:45:54 request.args = Collections.singletonList(dirName); 01:45:54 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:55 final ImportJob importJob = new ImportJobI(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:45:55 final ImportJob importJob = new ImportJobI(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:45:55 importJob.setImageName(omero.rtypes.rstring(name)); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:45:55 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:55 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:45:55 final String savedName = sent.getImageName().getValue().toString(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:45:55 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:45:55 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:45:55 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:45:55 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 RoiResult r = svc.findByImage(image.getId().getValue(), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:45:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:45:55 table = svc.getTable(f.getId().getValue()); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 RoiResult r = svc.findByImage(image.getId().getValue(), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:45:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:45:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:45:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 01:45:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:45:55 svc.getShapeStatsRestricted( 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:45:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:45:55 ^ 01:45:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:45:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:45:55 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:45:56 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:45:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:45:56 request.typesToIgnore = Collections.singletonList("Annotation"); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:45:56 request.typesToIgnore = Collections.singletonList("Annotation"); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:45:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:45:56 p2.setRelatedTo(p1); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:45:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:45:56 pixels1.setRelatedTo(pixels2); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:45:56 Pixels pixels = pixels1.getRelatedTo(); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:45:56 Assert.assertNull(pixels1.getRelatedTo()); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:45:56 pixels1.setRelatedTo(pixels2); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:45:56 Pixels pixels = pixels1.getRelatedTo(); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:45:56 Assert.assertNull(pixels1.getRelatedTo()); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:56 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:45:56 ^ 01:45:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:45:56 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:45:56 ^ 01:45:56 Note: Some input files use unchecked or unsafe operations. 01:45:56 Note: Recompile with -Xlint:unchecked for details. 01:45:56 88 warnings 01:45:56 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1624348925.tmp 01:45:56 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:45:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:56 :: delivering :: omero#OmeroJava-test;working@2fed98c19e20 :: 5.6.3-474-1c6eaf1a38-ice36 :: integration :: Sat Jun 22 01:45:44 UTC 2024 01:45:56 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:45:56 :: publishing :: omero#OmeroJava-test 01:45:56 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-474-1c6eaf1a38-ice36.jar 01:45:56 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-474-1c6eaf1a38-ice36.xml 01:45:56 01:45:56 build-eclipse: 01:45:56 No sub-builds to iterate on 01:45:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:45:56 01:45:56 retrieve: 01:45:56 :: Apache Ivy 2.5.2 - 20230817170011 :: https://ant.apache.org/ivy/ :: 01:45:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:45:59 01:45:59 prepare: 01:45:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:46:01 01:46:01 release-clients: 01:46:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-474-1c6eaf1a38-ice36.zip 01:46:07 01:46:07 release-zip: 01:46:07 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-474-1c6eaf1a38-ice36.zip 01:46:20 01:46:20 BUILD SUCCESSFUL 01:46:20 Total time: 1 minute 24 seconds 01:46:20 ++ '[' -d .git ']' 01:46:20 ++ python3 ./build.py release-src 01:46:20 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 01:46:20 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:46:21 01:46:21 release-src-git: 01:46:21 Releasing openmicroscopy-5.6.3-474-1c6eaf1a38-ice36 01:46:23 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-474-1c6eaf1a38-ice36.zip 01:46:23 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-474-1c6eaf1a38-ice36-base.zip 01:46:25 01:46:25 BUILD SUCCESSFUL 01:46:25 Total time: 4 seconds 01:46:25 ++ echo BUILD_NUMBER=99 01:46:25 ++ echo OMERO_BRANCH=merge_ci 01:46:25 ++ git_info 01:46:25 +++ git rev-parse HEAD 01:46:25 ++ HEAD=1c6eaf1a3844e007c354084ae02cb4982564d791 01:46:25 ++ git log --max-count=1 1c6eaf1a3844e007c354084ae02cb4982564d791 01:46:25 ++ env 01:46:25 ++ sort 01:46:25 Archiving artifacts 01:46:55 Finished: SUCCESS