11:26:26 Started by upstream project "Trigger" build number 226 11:26:26 originally caused by: 11:26:26 Started by user devspace 11:26:26 Running as SYSTEM 11:26:26 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 11:26:26 The recommended git tool is: NONE 11:26:26 No credentials specified 11:26:26 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 11:26:26 Fetching changes from the remote Git repository 11:26:26 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 11:26:26 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 11:26:26 > git --version # timeout=10 11:26:26 > git --version # 'git version 2.43.5' 11:26:26 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:26:28 > git rev-parse origin/develop^{commit} # timeout=10 11:26:28 Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop) 11:26:28 > git config core.sparsecheckout # timeout=10 11:26:28 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30 11:26:30 Commit message: "Merge pull request #6407 from will-moore/history_5.6.13" 11:26:30 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10 11:26:30 Cleaning workspace 11:26:30 > git rev-parse --verify HEAD # timeout=10 11:26:30 Resetting working tree 11:26:30 > git reset --hard # timeout=10 11:26:30 > git clean -fdx # timeout=10 11:26:30 Copied 1 artifact from "OMERO-python-superbuild-build" build number 185 11:26:30 [OMERO-push] $ /bin/bash -xe /tmp/jenkins9961997528121088895.sh 11:26:30 + python3 -mvenv venv 11:26:33 + source /home/omero/workspace/OMERO-push/venv/bin/activate 11:26:33 ++ deactivate nondestructive 11:26:33 ++ '[' -n '' ']' 11:26:33 ++ '[' -n '' ']' 11:26:33 ++ '[' -n /bin/bash -o -n '' ']' 11:26:33 ++ hash -r 11:26:33 ++ '[' -n '' ']' 11:26:33 ++ unset VIRTUAL_ENV 11:26:33 ++ '[' '!' nondestructive = nondestructive ']' 11:26:33 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 11:26:33 ++ export VIRTUAL_ENV 11:26:33 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:26:33 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:26:33 ++ export PATH 11:26:33 ++ '[' -n '' ']' 11:26:33 ++ '[' -z '' ']' 11:26:33 ++ _OLD_VIRTUAL_PS1= 11:26:33 ++ PS1='(venv) ' 11:26:33 ++ export PS1 11:26:33 ++ '[' -n /bin/bash -o -n '' ']' 11:26:33 ++ hash -r 11:26:33 + pip install -U pip 11:26:37 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2) 11:26:37 + pip install -U scc 11:26:37 Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0) 11:26:37 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) 11:26:37 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) 11:26:37 Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) 11:26:37 Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) 11:26:37 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) 11:26:37 Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) 11:26:37 Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) 11:26:37 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) 11:26:37 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) 11:26:37 Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) 11:26:37 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) 11:26:37 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) 11:26:37 Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) 11:26:37 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) 11:26:37 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) 11:26:37 Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) 11:26:37 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) 11:26:37 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) 11:26:37 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) 11:26:37 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) 11:26:37 Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) 11:26:37 + test -e src 11:26:37 + cd src 11:26:37 ++ git config github.user 11:26:37 + user=snoopycrimecop 11:26:37 + scc merge develop --no-ask --reset --shallow -S success-only 11:26:43 2024-09-26 11:26:43,175 [ scc.merge] INFO Merging Pull Request(s) based on develop 11:26:43 2024-09-26 11:26:43,175 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 11:26:43 2024-09-26 11:26:43,176 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 11:26:43 2024-09-26 11:26:43,176 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 11:26:43 2024-09-26 11:26:43,176 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 11:26:43 2024-09-26 11:26:43,176 [ scc.merge] INFO Excluding Pull Request(s) without successful status 11:27:13 2024-09-26 11:27:13,909 [ scc.merge] INFO Repository: ome/openmicroscopy 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO Excluded PRs: 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO Already up to date. 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO Merged PRs: 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6309 jburel 'add try block' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API' 11:27:13 2024-09-26 11:27:13,910 [ scc.merge] INFO 11:27:13 + cp etc/omero.properties etc/omero.properties.bak 11:27:13 + rm etc/omero.properties 11:27:13 + touch etc/omero.properties 11:27:13 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 11:27:13 + ne=249 11:27:13 ++ sed -n 1,249p etc/omero.properties.bak 11:27:13 + line='## 11:27:13 ## omero.properties 11:27:13 ## ---------------- 11:27:13 ## 11:27:13 ## DO NOT EDIT! 11:27:13 ## 11:27:13 ## 11:27:13 ## Any of these properties can be altered by using `omero config`. MODIFYING 11:27:13 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 11:27:13 ## at compile time! 11:27:13 ## 11:27:13 ## For an overview of these properties, see 11:27:13 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 11:27:13 ## 11:27:13 ## Properties marked with "DEVELOPMENT" should not be used in production. 11:27:13 11:27:13 # Comma separated list of Ice transports available to clients. The default 11:27:13 # value ("ssl,tcp") instructs Ice to open the ports specified by the 11:27:13 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 11:27:13 # will prevent all non-encrypted connections to the OMERO server. 11:27:13 # 11:27:13 # Additionally, there are two experimental values for using websockets: 11:27:13 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 11:27:13 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 11:27:13 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 11:27:13 # 11:27:13 # Note: When using websockets behind a web server like nginx, additional 11:27:13 # configuration may be needed. 11:27:13 omero.client.icetransports=ssl,tcp 11:27:13 11:27:13 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 11:27:13 # server 11:27:13 omero.ports.prefix= 11:27:13 11:27:13 # The Glacier2 SSL port number to use 11:27:13 omero.ports.ssl=4064 11:27:13 11:27:13 # The Glacier2 TCP port number to use (unencrypted) 11:27:13 omero.ports.tcp=4063 11:27:13 11:27:13 # The Glacier2 WSS port number to use 11:27:13 omero.ports.wss=4066 11:27:13 11:27:13 # The Glacier2 WS port number to use (unencrypted) 11:27:13 omero.ports.ws=4065 11:27:13 11:27:13 # The IceGrid registry port number to use 11:27:13 omero.ports.registry=4061 11:27:13 11:27:13 ############################################# 11:27:13 ## JVM configuration 11:27:13 ## 11:27:13 ## Note: changes to the omero.jvmcfg properties 11:27:13 ## will *not* be reflected in OMERO.server 11:27:13 ## since they are defined in OMERO.py. 11:27:13 ############################################# 11:27:13 ## (For documentation only) 11:27:13 # Memory strategy which will be used by default. 11:27:13 # Options include: percent, manual 11:27:13 omero.jvmcfg.strategy=percent 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Explicit value for the `-Xmx` argument, e.g. 11:27:13 # "1g" 11:27:13 omero.jvmcfg.heap_size= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Explicit value for the MaxPermSize argument 11:27:13 # to the JVM, e.g. "500M". Ignored for Java8+ 11:27:13 omero.jvmcfg.perm_gen= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Toggles on or off heap dumps on OOMs. Default is "off". 11:27:13 # The special value "tmp" will create the heap dumps in 11:27:13 # your temp directory. 11:27:13 omero.jvmcfg.heap_dump= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Used only by the percent strategy. An integer between 0 11:27:13 # and 100 which is the percent of active memory that will 11:27:13 # be used by the service. 11:27:13 omero.jvmcfg.percent= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Contains other parameters which should be passed to the 11:27:13 # JVM. The value of "append" is treated as if it were on 11:27:13 # the command line so will be separated on whitespace. 11:27:13 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 11:27:13 # results in two new arguments. 11:27:13 # Note that when using `config set` from the command line 11:27:13 # one may need to give a prior `--` option to prevent a value 11:27:13 # starting with `-` from already being parsed as an option, 11:27:13 # and values may need quoting to prevent whitespace or other 11:27:13 # significant characters from being interpreted prematurely. 11:27:13 11:27:13 omero.jvmcfg.append= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Manual override of the total system memory that 11:27:13 # OMERO will *think* is present on the local OS (MB). 11:27:13 # If unset, an attempt will be made to detect the actual 11:27:13 # amount: first by using the Python library `psutil` and 11:27:13 # if that is not installed, by running a Java tool. If 11:27:13 # neither works, 4.0GB is assumed. 11:27:13 omero.jvmcfg.system_memory= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Suggestion for strategies as to the minimum memory 11:27:13 # that they will use for calculating JVM settings (MB). 11:27:13 omero.jvmcfg.min_system_memory=3414 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Suggestion for strategies as to the maximum memory 11:27:13 # that they will use for calculating JVM settings (MB). 11:27:13 omero.jvmcfg.max_system_memory=48000 11:27:13 11:27:13 11:27:13 ############################################# 11:27:13 ## Logging properties 11:27:13 ## 11:27:13 ## Note: changes to the default omero.logging values in 11:27:13 ## this file will *not* be reflected in OMERO.server 11:27:13 ## since they are defined in OMERO.py 11:27:13 ############################################# 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Relative server directory where the log files should be stored. 11:27:13 omero.logging.directory=var/log/ 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Whether the server log files should be rotated at a certain time 11:27:13 # interval. If true, log files will be rolled over at midnight. 11:27:13 # Otherwise, log files will be rolled over at a predetermined size, 11:27:13 # see omero.logging.logsize for more information. 11:27:13 omero.logging.timedlog=false 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # If omero.logging.timedlog is false or unset, specifies the 11:27:13 # maximum size of the server log files in bytes above which a 11:27:13 # new log file should be created. 11:27:13 omero.logging.logsize=5000000 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # If omero.logging.timedlog is false or unset, specifies the 11:27:13 # number of old server log files that should be kept. Old log 11:27:13 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 11:27:13 omero.logging.lognum=9 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Specifies the threshold for the Python servers log files. Logging messages 11:27:13 # which are less severe than this value will be ignored. For a list of 11:27:13 # available values, see https://docs.python.org/3/library/logging.html#levels. 11:27:13 omero.logging.level=20 11:27:13 11:27:13 ############################################# 11:27:13 ## Ice overrides 11:27:13 ## 11:27:13 ## Though not used directly by OMERO, a number 11:27:13 ## of properties prefixed with "Ice.*" will 11:27:13 ## alter the behavior of the OMERO runtime 11:27:13 ## by configuring the Ice communicators. For a 11:27:13 ## full listing see: 11:27:13 ## 11:27:13 ## http://doc.zeroc.com/display/Ice/Property+Reference 11:27:13 ## For more information see 11:27:13 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 11:27:13 ############################################# 11:27:13 11:27:13 # Disable IPv6 by setting to 0. Only needed in 11:27:13 # certain situations. 11:27:13 Ice.IPv6=1 11:27:13 11:27:13 # Glacier2Template IceSSL defaults and overrides, 11:27:13 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 11:27:13 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 11:27:13 # update the corresponding IceSSL. property. 11:27:13 omero.glacier2.IceSSL= 11:27:13 11:27:13 # Glacier2Template SSL maximum allowed protocol (mac bug) 11:27:13 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 11:27:13 # Glacier2Template SSL allowed cipher suites 11:27:13 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 11:27:13 # Glacier2Template SSL verification requirements 11:27:13 omero.glacier2.IceSSL.VerifyPeer=0 11:27:13 # Glacier2Template SSL allowed protocols 11:27:13 omero.glacier2.IceSSL.Protocols=tls1 11:27:13 11:27:13 # Override the default set of OMERO services. 11:27:13 # For example, to run OMERO.server with Blitz and Tables only 11:27:13 # (i.e. disable Processor, DropBox, Indexer, PixelData) 11:27:13 # set this to ``master:Blitz-0,Tables-0``. 11:27:13 # Also use this to distribute OMERO services across multiple nodes, 11:27:13 # for example: 11:27:13 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 11:27:13 # See 11:27:13 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 11:27:13 omero.server.nodedescriptors= 11:27:13 11:27:13 ############################################# 11:27:13 ## Darwin (OS X) specific defaults for templated configuration files only. 11:27:13 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 11:27:13 ## file. 11:27:13 ## Do not set these properties in ``omero config``, instead set the original 11:27:13 ## ``xxx.yyy`` property 11:27:13 ############################################# 11:27:13 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Name of the Python module to use when starting the Tables service 11:27:13 omero.tables.module=runTables 11:27:13 11:27:13 ############################################# 11:27:13 ## Server product name for release artifacts 11:27:13 ############################################# 11:27:13 product.name=OMERO.server 11:27:13 11:27:13 ############################################# 11:27:13 ### Properties below this marker are ignored by 11:27:13 ### omero.install.config_parser.PropertyParser 11:27:13 ### END 11:27:13 11:27:13 ############################################# 11:27:13 ## Library versions 11:27:13 ############################################# 11:27:13 ## 11:27:13 versions.findbugs=1.2.1 11:27:13 versions.ice36=3.6.5 11:27:13 versions.ice36_lib=36 11:27:13 ## internal 11:27:13 versions.omeroshares36=3.6.3 11:27:13 versions.omeromock36=3.6.3 11:27:13 versions.icedb36=3.6.3 11:27:13 versions.ipython=1.2.1 11:27:13 11:27:13 versions.janino=2.5.10 11:27:13 11:27:13 versions.reportng=1.1.1 11:27:13 11:27:13 versions.testng=7.5 11:27:13 versions.velocity=1.4 11:27:13 11:27:13 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 11:27:13 versions.omero-scripts-url=${versions.omero-pypi} 11:27:13 11:27:13 ### 11:27:13 ### Appended Values 11:27:13 ### 11:27:13 11:27:13 ## Internal dependencies' 11:27:13 + echo '## 11:27:13 ## omero.properties 11:27:13 ## ---------------- 11:27:13 ## 11:27:13 ## DO NOT EDIT! 11:27:13 ## 11:27:13 ## 11:27:13 ## Any of these properties can be altered by using `omero config`. MODIFYING 11:27:13 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 11:27:13 ## at compile time! 11:27:13 ## 11:27:13 ## For an overview of these properties, see 11:27:13 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 11:27:13 ## 11:27:13 ## Properties marked with "DEVELOPMENT" should not be used in production. 11:27:13 11:27:13 # Comma separated list of Ice transports available to clients. The default 11:27:13 # value ("ssl,tcp") instructs Ice to open the ports specified by the 11:27:13 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 11:27:13 # will prevent all non-encrypted connections to the OMERO server. 11:27:13 # 11:27:13 # Additionally, there are two experimental values for using websockets: 11:27:13 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 11:27:13 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 11:27:13 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 11:27:13 # 11:27:13 # Note: When using websockets behind a web server like nginx, additional 11:27:13 # configuration may be needed. 11:27:13 omero.client.icetransports=ssl,tcp 11:27:13 11:27:13 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 11:27:13 # server 11:27:13 omero.ports.prefix= 11:27:13 11:27:13 # The Glacier2 SSL port number to use 11:27:13 omero.ports.ssl=4064 11:27:13 11:27:13 # The Glacier2 TCP port number to use (unencrypted) 11:27:13 omero.ports.tcp=4063 11:27:13 11:27:13 # The Glacier2 WSS port number to use 11:27:13 omero.ports.wss=4066 11:27:13 11:27:13 # The Glacier2 WS port number to use (unencrypted) 11:27:13 omero.ports.ws=4065 11:27:13 11:27:13 # The IceGrid registry port number to use 11:27:13 omero.ports.registry=4061 11:27:13 11:27:13 ############################################# 11:27:13 ## JVM configuration 11:27:13 ## 11:27:13 ## Note: changes to the omero.jvmcfg properties 11:27:13 ## will *not* be reflected in OMERO.server 11:27:13 ## since they are defined in OMERO.py. 11:27:13 ############################################# 11:27:13 ## (For documentation only) 11:27:13 # Memory strategy which will be used by default. 11:27:13 # Options include: percent, manual 11:27:13 omero.jvmcfg.strategy=percent 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Explicit value for the `-Xmx` argument, e.g. 11:27:13 # "1g" 11:27:13 omero.jvmcfg.heap_size= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Explicit value for the MaxPermSize argument 11:27:13 # to the JVM, e.g. "500M". Ignored for Java8+ 11:27:13 omero.jvmcfg.perm_gen= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Toggles on or off heap dumps on OOMs. Default is "off". 11:27:13 # The special value "tmp" will create the heap dumps in 11:27:13 # your temp directory. 11:27:13 omero.jvmcfg.heap_dump= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Used only by the percent strategy. An integer between 0 11:27:13 # and 100 which is the percent of active memory that will 11:27:13 # be used by the service. 11:27:13 omero.jvmcfg.percent= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Contains other parameters which should be passed to the 11:27:13 # JVM. The value of "append" is treated as if it were on 11:27:13 # the command line so will be separated on whitespace. 11:27:13 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 11:27:13 # results in two new arguments. 11:27:13 # Note that when using `config set` from the command line 11:27:13 # one may need to give a prior `--` option to prevent a value 11:27:13 # starting with `-` from already being parsed as an option, 11:27:13 # and values may need quoting to prevent whitespace or other 11:27:13 # significant characters from being interpreted prematurely. 11:27:13 11:27:13 omero.jvmcfg.append= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Manual override of the total system memory that 11:27:13 # OMERO will *think* is present on the local OS (MB). 11:27:13 # If unset, an attempt will be made to detect the actual 11:27:13 # amount: first by using the Python library `psutil` and 11:27:13 # if that is not installed, by running a Java tool. If 11:27:13 # neither works, 4.0GB is assumed. 11:27:13 omero.jvmcfg.system_memory= 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Suggestion for strategies as to the minimum memory 11:27:13 # that they will use for calculating JVM settings (MB). 11:27:13 omero.jvmcfg.min_system_memory=3414 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Suggestion for strategies as to the maximum memory 11:27:13 # that they will use for calculating JVM settings (MB). 11:27:13 omero.jvmcfg.max_system_memory=48000 11:27:13 11:27:13 11:27:13 ############################################# 11:27:13 ## Logging properties 11:27:13 ## 11:27:13 ## Note: changes to the default omero.logging values in 11:27:13 ## this file will *not* be reflected in OMERO.server 11:27:13 ## since they are defined in OMERO.py 11:27:13 ############################################# 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Relative server directory where the log files should be stored. 11:27:13 omero.logging.directory=var/log/ 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Whether the server log files should be rotated at a certain time 11:27:13 # interval. If true, log files will be rolled over at midnight. 11:27:13 # Otherwise, log files will be rolled over at a predetermined size, 11:27:13 # see omero.logging.logsize for more information. 11:27:13 omero.logging.timedlog=false 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # If omero.logging.timedlog is false or unset, specifies the 11:27:13 # maximum size of the server log files in bytes above which a 11:27:13 # new log file should be created. 11:27:13 omero.logging.logsize=5000000 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # If omero.logging.timedlog is false or unset, specifies the 11:27:13 # number of old server log files that should be kept. Old log 11:27:13 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 11:27:13 omero.logging.lognum=9 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Specifies the threshold for the Python servers log files. Logging messages 11:27:13 # which are less severe than this value will be ignored. For a list of 11:27:13 # available values, see https://docs.python.org/3/library/logging.html#levels. 11:27:13 omero.logging.level=20 11:27:13 11:27:13 ############################################# 11:27:13 ## Ice overrides 11:27:13 ## 11:27:13 ## Though not used directly by OMERO, a number 11:27:13 ## of properties prefixed with "Ice.*" will 11:27:13 ## alter the behavior of the OMERO runtime 11:27:13 ## by configuring the Ice communicators. For a 11:27:13 ## full listing see: 11:27:13 ## 11:27:13 ## http://doc.zeroc.com/display/Ice/Property+Reference 11:27:13 ## For more information see 11:27:13 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 11:27:13 ############################################# 11:27:13 11:27:13 # Disable IPv6 by setting to 0. Only needed in 11:27:13 # certain situations. 11:27:13 Ice.IPv6=1 11:27:13 11:27:13 # Glacier2Template IceSSL defaults and overrides, 11:27:13 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 11:27:13 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 11:27:13 # update the corresponding IceSSL. property. 11:27:13 omero.glacier2.IceSSL= 11:27:13 11:27:13 # Glacier2Template SSL maximum allowed protocol (mac bug) 11:27:13 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 11:27:13 # Glacier2Template SSL allowed cipher suites 11:27:13 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 11:27:13 # Glacier2Template SSL verification requirements 11:27:13 omero.glacier2.IceSSL.VerifyPeer=0 11:27:13 # Glacier2Template SSL allowed protocols 11:27:13 omero.glacier2.IceSSL.Protocols=tls1 11:27:13 11:27:13 # Override the default set of OMERO services. 11:27:13 # For example, to run OMERO.server with Blitz and Tables only 11:27:13 # (i.e. disable Processor, DropBox, Indexer, PixelData) 11:27:13 # set this to ``master:Blitz-0,Tables-0``. 11:27:13 # Also use this to distribute OMERO services across multiple nodes, 11:27:13 # for example: 11:27:13 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 11:27:13 # See 11:27:13 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 11:27:13 omero.server.nodedescriptors= 11:27:13 11:27:13 ############################################# 11:27:13 ## Darwin (OS X) specific defaults for templated configuration files only. 11:27:13 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 11:27:13 ## file. 11:27:13 ## Do not set these properties in ``omero config``, instead set the original 11:27:13 ## ``xxx.yyy`` property 11:27:13 ############################################# 11:27:13 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 11:27:13 11:27:13 ## (For documentation only) 11:27:13 # Name of the Python module to use when starting the Tables service 11:27:13 omero.tables.module=runTables 11:27:13 11:27:13 ############################################# 11:27:13 ## Server product name for release artifacts 11:27:13 ############################################# 11:27:13 product.name=OMERO.server 11:27:13 11:27:13 ############################################# 11:27:13 ### Properties below this marker are ignored by 11:27:13 ### omero.install.config_parser.PropertyParser 11:27:13 ### END 11:27:13 11:27:13 ############################################# 11:27:13 ## Library versions 11:27:13 ############################################# 11:27:13 ## 11:27:13 versions.findbugs=1.2.1 11:27:13 versions.ice36=3.6.5 11:27:13 versions.ice36_lib=36 11:27:13 ## internal 11:27:13 versions.omeroshares36=3.6.3 11:27:13 versions.omeromock36=3.6.3 11:27:13 versions.icedb36=3.6.3 11:27:13 versions.ipython=1.2.1 11:27:13 11:27:13 versions.janino=2.5.10 11:27:13 11:27:13 versions.reportng=1.1.1 11:27:13 11:27:13 versions.testng=7.5 11:27:13 versions.velocity=1.4 11:27:13 11:27:13 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 11:27:13 versions.omero-scripts-url=${versions.omero-pypi} 11:27:13 11:27:13 ### 11:27:13 ### Appended Values 11:27:13 ### 11:27:13 11:27:13 ## Internal dependencies' 11:27:13 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 11:27:13 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 11:27:13 + echo versions.scripts-prefix= 11:27:13 + echo versions.scripts=merge_ci 11:27:13 + cat /home/omero/workspace/OMERO-push/version.properties 11:27:13 + git commit -a -m 'Add version.properties to etc/omero.properties' 11:27:14 [detached HEAD 4bf99efd43] Add version.properties to etc/omero.properties 11:27:14 1 file changed, 47 insertions(+), 7 deletions(-) 11:27:14 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 11:27:15 To github.com:snoopycrimecop/openmicroscopy.git 11:27:15 + f903836379...4bf99efd43 HEAD -> merge_ci (forced update) 11:27:15 Finished: SUCCESS