00:45:02 Started by upstream project "Trigger" build number 236 00:45:02 originally caused by: 00:45:02 Started by timer 00:45:02 Running as SYSTEM 00:45:02 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 00:45:02 The recommended git tool is: NONE 00:45:02 No credentials specified 00:45:02 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 00:45:02 Fetching changes from the remote Git repository 00:45:02 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 00:45:02 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 00:45:02 > git --version # timeout=10 00:45:02 > git --version # 'git version 2.43.5' 00:45:02 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:45:05 > git rev-parse origin/develop^{commit} # timeout=10 00:45:05 Checking out Revision e9fe27633007773042c840e356c5ff37ec03f550 (origin/develop) 00:45:05 > git config core.sparsecheckout # timeout=10 00:45:05 > git checkout -f e9fe27633007773042c840e356c5ff37ec03f550 # timeout=30 00:45:07 Commit message: "Merge pull request #6407 from will-moore/history_5.6.13" 00:45:07 > git rev-list --no-walk e9fe27633007773042c840e356c5ff37ec03f550 # timeout=10 00:45:08 Cleaning workspace 00:45:08 > git rev-parse --verify HEAD # timeout=10 00:45:08 Resetting working tree 00:45:08 > git reset --hard # timeout=10 00:45:08 > git clean -fdx # timeout=10 00:45:08 Copied 1 artifact from "OMERO-python-superbuild-build" build number 191 00:45:08 [OMERO-push] $ /bin/bash -xe /tmp/jenkins12104436931186840318.sh 00:45:08 + python3 -mvenv venv 00:45:10 + source /home/omero/workspace/OMERO-push/venv/bin/activate 00:45:10 ++ deactivate nondestructive 00:45:10 ++ '[' -n '' ']' 00:45:10 ++ '[' -n '' ']' 00:45:10 ++ '[' -n /bin/bash -o -n '' ']' 00:45:10 ++ hash -r 00:45:10 ++ '[' -n '' ']' 00:45:10 ++ unset VIRTUAL_ENV 00:45:10 ++ '[' '!' nondestructive = nondestructive ']' 00:45:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 00:45:10 ++ export VIRTUAL_ENV 00:45:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:10 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:45:10 ++ export PATH 00:45:10 ++ '[' -n '' ']' 00:45:10 ++ '[' -z '' ']' 00:45:10 ++ _OLD_VIRTUAL_PS1= 00:45:10 ++ PS1='(venv) ' 00:45:10 ++ export PS1 00:45:10 ++ '[' -n /bin/bash -o -n '' ']' 00:45:10 ++ hash -r 00:45:10 + pip install -U pip 00:45:15 Requirement already satisfied: pip in ./venv/lib/python3.9/site-packages (24.2) 00:45:16 + pip install -U scc 00:45:16 Requirement already satisfied: scc in ./venv/lib/python3.9/site-packages (0.20.0) 00:45:16 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib/python3.9/site-packages (from scc) (2.2.0) 00:45:16 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib/python3.9/site-packages (from scc) (6.0.1) 00:45:16 Requirement already satisfied: future in ./venv/lib/python3.9/site-packages (from scc) (1.0.0) 00:45:16 Requirement already satisfied: ruamel.yaml in ./venv/lib/python3.9/site-packages (from scc) (0.18.6) 00:45:16 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib/python3.9/site-packages (from scc) (0.2.7) 00:45:16 Requirement already satisfied: six in ./venv/lib/python3.9/site-packages (from scc) (1.16.0) 00:45:16 Requirement already satisfied: urllib3<2 in ./venv/lib/python3.9/site-packages (from scc) (1.26.18) 00:45:16 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib/python3.9/site-packages (from scc) (0.2.0) 00:45:16 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.5.0) 00:45:16 Requirement already satisfied: requests>=2.14.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (2.31.0) 00:45:16 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.8.0) 00:45:16 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (4.10.0) 00:45:16 Requirement already satisfied: Deprecated in ./venv/lib/python3.9/site-packages (from PyGithub>=1.54->scc) (1.2.14) 00:45:16 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib/python3.9/site-packages (from ruamel.yaml->scc) (0.2.8) 00:45:16 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib/python3.9/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (42.0.5) 00:45:16 Requirement already satisfied: cffi>=1.4.1 in ./venv/lib/python3.9/site-packages (from pynacl>=1.4.0->PyGithub>=1.54->scc) (1.16.0) 00:45:16 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.3.2) 00:45:16 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.6) 00:45:16 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib/python3.9/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2024.2.2) 00:45:16 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib/python3.9/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.16.0) 00:45:16 Requirement already satisfied: pycparser in ./venv/lib/python3.9/site-packages (from cffi>=1.4.1->pynacl>=1.4.0->PyGithub>=1.54->scc) (2.21) 00:45:16 + test -e src 00:45:16 + cd src 00:45:16 ++ git config github.user 00:45:16 + user=snoopycrimecop 00:45:16 + scc merge develop --no-ask --reset --shallow -S success-only 00:45:23 2024-10-05 00:45:23,308 [ scc.merge] INFO Merging Pull Request(s) based on develop 00:45:23 2024-10-05 00:45:23,309 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 00:45:23 2024-10-05 00:45:23,309 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 00:45:23 2024-10-05 00:45:23,309 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 00:45:23 2024-10-05 00:45:23,309 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 00:45:23 2024-10-05 00:45:23,309 [ scc.merge] INFO Excluding Pull Request(s) without successful status 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO Repository: ome/openmicroscopy 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO Excluded PRs: 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6398 Tom-TBT 'Perceptibly uniform luts' (user: Tom-TBT) 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO Already up to date. 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO Merged PRs: 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6309 jburel 'add try block' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6385 jburel 'remove test using deprecated method' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6409 sbesson 'Bump jul-to-slf4j and jcl-over-slf4j to version 2.0.16' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6410 snoopycrimecop 'update dependencies' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6411 knabar 'Check query without matches' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO - PR 6412 sbesson 'Extend test coverage for tables slice, read and readCoordinates API' 00:45:54 2024-10-05 00:45:54,731 [ scc.merge] INFO 00:45:54 + cp etc/omero.properties etc/omero.properties.bak 00:45:54 + rm etc/omero.properties 00:45:54 + touch etc/omero.properties 00:45:54 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 00:45:54 + ne=249 00:45:54 ++ sed -n 1,249p etc/omero.properties.bak 00:45:54 + line='## 00:45:54 ## omero.properties 00:45:54 ## ---------------- 00:45:54 ## 00:45:54 ## DO NOT EDIT! 00:45:54 ## 00:45:54 ## 00:45:54 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:45:54 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:45:54 ## at compile time! 00:45:54 ## 00:45:54 ## For an overview of these properties, see 00:45:54 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:45:54 ## 00:45:54 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:45:54 00:45:54 # Comma separated list of Ice transports available to clients. The default 00:45:54 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:45:54 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:45:54 # will prevent all non-encrypted connections to the OMERO server. 00:45:54 # 00:45:54 # Additionally, there are two experimental values for using websockets: 00:45:54 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:45:54 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:45:54 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:45:54 # 00:45:54 # Note: When using websockets behind a web server like nginx, additional 00:45:54 # configuration may be needed. 00:45:54 omero.client.icetransports=ssl,tcp 00:45:54 00:45:54 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:45:54 # server 00:45:54 omero.ports.prefix= 00:45:54 00:45:54 # The Glacier2 SSL port number to use 00:45:54 omero.ports.ssl=4064 00:45:54 00:45:54 # The Glacier2 TCP port number to use (unencrypted) 00:45:54 omero.ports.tcp=4063 00:45:54 00:45:54 # The Glacier2 WSS port number to use 00:45:54 omero.ports.wss=4066 00:45:54 00:45:54 # The Glacier2 WS port number to use (unencrypted) 00:45:54 omero.ports.ws=4065 00:45:54 00:45:54 # The IceGrid registry port number to use 00:45:54 omero.ports.registry=4061 00:45:54 00:45:54 ############################################# 00:45:54 ## JVM configuration 00:45:54 ## 00:45:54 ## Note: changes to the omero.jvmcfg properties 00:45:54 ## will *not* be reflected in OMERO.server 00:45:54 ## since they are defined in OMERO.py. 00:45:54 ############################################# 00:45:54 ## (For documentation only) 00:45:54 # Memory strategy which will be used by default. 00:45:54 # Options include: percent, manual 00:45:54 omero.jvmcfg.strategy=percent 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Explicit value for the `-Xmx` argument, e.g. 00:45:54 # "1g" 00:45:54 omero.jvmcfg.heap_size= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Explicit value for the MaxPermSize argument 00:45:54 # to the JVM, e.g. "500M". Ignored for Java8+ 00:45:54 omero.jvmcfg.perm_gen= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Toggles on or off heap dumps on OOMs. Default is "off". 00:45:54 # The special value "tmp" will create the heap dumps in 00:45:54 # your temp directory. 00:45:54 omero.jvmcfg.heap_dump= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Used only by the percent strategy. An integer between 0 00:45:54 # and 100 which is the percent of active memory that will 00:45:54 # be used by the service. 00:45:54 omero.jvmcfg.percent= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Contains other parameters which should be passed to the 00:45:54 # JVM. The value of "append" is treated as if it were on 00:45:54 # the command line so will be separated on whitespace. 00:45:54 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:45:54 # results in two new arguments. 00:45:54 # Note that when using `config set` from the command line 00:45:54 # one may need to give a prior `--` option to prevent a value 00:45:54 # starting with `-` from already being parsed as an option, 00:45:54 # and values may need quoting to prevent whitespace or other 00:45:54 # significant characters from being interpreted prematurely. 00:45:54 00:45:54 omero.jvmcfg.append= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Manual override of the total system memory that 00:45:54 # OMERO will *think* is present on the local OS (MB). 00:45:54 # If unset, an attempt will be made to detect the actual 00:45:54 # amount: first by using the Python library `psutil` and 00:45:54 # if that is not installed, by running a Java tool. If 00:45:54 # neither works, 4.0GB is assumed. 00:45:54 omero.jvmcfg.system_memory= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Suggestion for strategies as to the minimum memory 00:45:54 # that they will use for calculating JVM settings (MB). 00:45:54 omero.jvmcfg.min_system_memory=3414 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Suggestion for strategies as to the maximum memory 00:45:54 # that they will use for calculating JVM settings (MB). 00:45:54 omero.jvmcfg.max_system_memory=48000 00:45:54 00:45:54 00:45:54 ############################################# 00:45:54 ## Logging properties 00:45:54 ## 00:45:54 ## Note: changes to the default omero.logging values in 00:45:54 ## this file will *not* be reflected in OMERO.server 00:45:54 ## since they are defined in OMERO.py 00:45:54 ############################################# 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Relative server directory where the log files should be stored. 00:45:54 omero.logging.directory=var/log/ 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Whether the server log files should be rotated at a certain time 00:45:54 # interval. If true, log files will be rolled over at midnight. 00:45:54 # Otherwise, log files will be rolled over at a predetermined size, 00:45:54 # see omero.logging.logsize for more information. 00:45:54 omero.logging.timedlog=false 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # If omero.logging.timedlog is false or unset, specifies the 00:45:54 # maximum size of the server log files in bytes above which a 00:45:54 # new log file should be created. 00:45:54 omero.logging.logsize=5000000 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # If omero.logging.timedlog is false or unset, specifies the 00:45:54 # number of old server log files that should be kept. Old log 00:45:54 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 00:45:54 omero.logging.lognum=9 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Specifies the threshold for the Python servers log files. Logging messages 00:45:54 # which are less severe than this value will be ignored. For a list of 00:45:54 # available values, see https://docs.python.org/3/library/logging.html#levels. 00:45:54 omero.logging.level=20 00:45:54 00:45:54 ############################################# 00:45:54 ## Ice overrides 00:45:54 ## 00:45:54 ## Though not used directly by OMERO, a number 00:45:54 ## of properties prefixed with "Ice.*" will 00:45:54 ## alter the behavior of the OMERO runtime 00:45:54 ## by configuring the Ice communicators. For a 00:45:54 ## full listing see: 00:45:54 ## 00:45:54 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:45:54 ## For more information see 00:45:54 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:45:54 ############################################# 00:45:54 00:45:54 # Disable IPv6 by setting to 0. Only needed in 00:45:54 # certain situations. 00:45:54 Ice.IPv6=1 00:45:54 00:45:54 # Glacier2Template IceSSL defaults and overrides, 00:45:54 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:45:54 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:45:54 # update the corresponding IceSSL. property. 00:45:54 omero.glacier2.IceSSL= 00:45:54 00:45:54 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:45:54 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:45:54 # Glacier2Template SSL allowed cipher suites 00:45:54 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:45:54 # Glacier2Template SSL verification requirements 00:45:54 omero.glacier2.IceSSL.VerifyPeer=0 00:45:54 # Glacier2Template SSL allowed protocols 00:45:54 omero.glacier2.IceSSL.Protocols=tls1 00:45:54 00:45:54 # Override the default set of OMERO services. 00:45:54 # For example, to run OMERO.server with Blitz and Tables only 00:45:54 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:45:54 # set this to ``master:Blitz-0,Tables-0``. 00:45:54 # Also use this to distribute OMERO services across multiple nodes, 00:45:54 # for example: 00:45:54 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:45:54 # See 00:45:54 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:45:54 omero.server.nodedescriptors= 00:45:54 00:45:54 ############################################# 00:45:54 ## Darwin (OS X) specific defaults for templated configuration files only. 00:45:54 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:45:54 ## file. 00:45:54 ## Do not set these properties in ``omero config``, instead set the original 00:45:54 ## ``xxx.yyy`` property 00:45:54 ############################################# 00:45:54 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Name of the Python module to use when starting the Tables service 00:45:54 omero.tables.module=runTables 00:45:54 00:45:54 ############################################# 00:45:54 ## Server product name for release artifacts 00:45:54 ############################################# 00:45:54 product.name=OMERO.server 00:45:54 00:45:54 ############################################# 00:45:54 ### Properties below this marker are ignored by 00:45:54 ### omero.install.config_parser.PropertyParser 00:45:54 ### END 00:45:54 00:45:54 ############################################# 00:45:54 ## Library versions 00:45:54 ############################################# 00:45:54 ## 00:45:54 versions.findbugs=1.2.1 00:45:54 versions.ice36=3.6.5 00:45:54 versions.ice36_lib=36 00:45:54 ## internal 00:45:54 versions.omeroshares36=3.6.3 00:45:54 versions.omeromock36=3.6.3 00:45:54 versions.icedb36=3.6.3 00:45:54 versions.ipython=1.2.1 00:45:54 00:45:54 versions.janino=2.5.10 00:45:54 00:45:54 versions.reportng=1.1.1 00:45:54 00:45:54 versions.testng=7.5 00:45:54 versions.velocity=1.4 00:45:54 00:45:54 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:45:54 versions.omero-scripts-url=${versions.omero-pypi} 00:45:54 00:45:54 ### 00:45:54 ### Appended Values 00:45:54 ### 00:45:54 00:45:54 ## Internal dependencies' 00:45:54 + echo '## 00:45:54 ## omero.properties 00:45:54 ## ---------------- 00:45:54 ## 00:45:54 ## DO NOT EDIT! 00:45:54 ## 00:45:54 ## 00:45:54 ## Any of these properties can be altered by using `omero config`. MODIFYING 00:45:54 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 00:45:54 ## at compile time! 00:45:54 ## 00:45:54 ## For an overview of these properties, see 00:45:54 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 00:45:54 ## 00:45:54 ## Properties marked with "DEVELOPMENT" should not be used in production. 00:45:54 00:45:54 # Comma separated list of Ice transports available to clients. The default 00:45:54 # value ("ssl,tcp") instructs Ice to open the ports specified by the 00:45:54 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 00:45:54 # will prevent all non-encrypted connections to the OMERO server. 00:45:54 # 00:45:54 # Additionally, there are two experimental values for using websockets: 00:45:54 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 00:45:54 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 00:45:54 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 00:45:54 # 00:45:54 # Note: When using websockets behind a web server like nginx, additional 00:45:54 # configuration may be needed. 00:45:54 omero.client.icetransports=ssl,tcp 00:45:54 00:45:54 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 00:45:54 # server 00:45:54 omero.ports.prefix= 00:45:54 00:45:54 # The Glacier2 SSL port number to use 00:45:54 omero.ports.ssl=4064 00:45:54 00:45:54 # The Glacier2 TCP port number to use (unencrypted) 00:45:54 omero.ports.tcp=4063 00:45:54 00:45:54 # The Glacier2 WSS port number to use 00:45:54 omero.ports.wss=4066 00:45:54 00:45:54 # The Glacier2 WS port number to use (unencrypted) 00:45:54 omero.ports.ws=4065 00:45:54 00:45:54 # The IceGrid registry port number to use 00:45:54 omero.ports.registry=4061 00:45:54 00:45:54 ############################################# 00:45:54 ## JVM configuration 00:45:54 ## 00:45:54 ## Note: changes to the omero.jvmcfg properties 00:45:54 ## will *not* be reflected in OMERO.server 00:45:54 ## since they are defined in OMERO.py. 00:45:54 ############################################# 00:45:54 ## (For documentation only) 00:45:54 # Memory strategy which will be used by default. 00:45:54 # Options include: percent, manual 00:45:54 omero.jvmcfg.strategy=percent 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Explicit value for the `-Xmx` argument, e.g. 00:45:54 # "1g" 00:45:54 omero.jvmcfg.heap_size= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Explicit value for the MaxPermSize argument 00:45:54 # to the JVM, e.g. "500M". Ignored for Java8+ 00:45:54 omero.jvmcfg.perm_gen= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Toggles on or off heap dumps on OOMs. Default is "off". 00:45:54 # The special value "tmp" will create the heap dumps in 00:45:54 # your temp directory. 00:45:54 omero.jvmcfg.heap_dump= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Used only by the percent strategy. An integer between 0 00:45:54 # and 100 which is the percent of active memory that will 00:45:54 # be used by the service. 00:45:54 omero.jvmcfg.percent= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Contains other parameters which should be passed to the 00:45:54 # JVM. The value of "append" is treated as if it were on 00:45:54 # the command line so will be separated on whitespace. 00:45:54 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 00:45:54 # results in two new arguments. 00:45:54 # Note that when using `config set` from the command line 00:45:54 # one may need to give a prior `--` option to prevent a value 00:45:54 # starting with `-` from already being parsed as an option, 00:45:54 # and values may need quoting to prevent whitespace or other 00:45:54 # significant characters from being interpreted prematurely. 00:45:54 00:45:54 omero.jvmcfg.append= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Manual override of the total system memory that 00:45:54 # OMERO will *think* is present on the local OS (MB). 00:45:54 # If unset, an attempt will be made to detect the actual 00:45:54 # amount: first by using the Python library `psutil` and 00:45:54 # if that is not installed, by running a Java tool. If 00:45:54 # neither works, 4.0GB is assumed. 00:45:54 omero.jvmcfg.system_memory= 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Suggestion for strategies as to the minimum memory 00:45:54 # that they will use for calculating JVM settings (MB). 00:45:54 omero.jvmcfg.min_system_memory=3414 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Suggestion for strategies as to the maximum memory 00:45:54 # that they will use for calculating JVM settings (MB). 00:45:54 omero.jvmcfg.max_system_memory=48000 00:45:54 00:45:54 00:45:54 ############################################# 00:45:54 ## Logging properties 00:45:54 ## 00:45:54 ## Note: changes to the default omero.logging values in 00:45:54 ## this file will *not* be reflected in OMERO.server 00:45:54 ## since they are defined in OMERO.py 00:45:54 ############################################# 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Relative server directory where the log files should be stored. 00:45:54 omero.logging.directory=var/log/ 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Whether the server log files should be rotated at a certain time 00:45:54 # interval. If true, log files will be rolled over at midnight. 00:45:54 # Otherwise, log files will be rolled over at a predetermined size, 00:45:54 # see omero.logging.logsize for more information. 00:45:54 omero.logging.timedlog=false 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # If omero.logging.timedlog is false or unset, specifies the 00:45:54 # maximum size of the server log files in bytes above which a 00:45:54 # new log file should be created. 00:45:54 omero.logging.logsize=5000000 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # If omero.logging.timedlog is false or unset, specifies the 00:45:54 # number of old server log files that should be kept. Old log 00:45:54 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 00:45:54 omero.logging.lognum=9 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Specifies the threshold for the Python servers log files. Logging messages 00:45:54 # which are less severe than this value will be ignored. For a list of 00:45:54 # available values, see https://docs.python.org/3/library/logging.html#levels. 00:45:54 omero.logging.level=20 00:45:54 00:45:54 ############################################# 00:45:54 ## Ice overrides 00:45:54 ## 00:45:54 ## Though not used directly by OMERO, a number 00:45:54 ## of properties prefixed with "Ice.*" will 00:45:54 ## alter the behavior of the OMERO runtime 00:45:54 ## by configuring the Ice communicators. For a 00:45:54 ## full listing see: 00:45:54 ## 00:45:54 ## http://doc.zeroc.com/display/Ice/Property+Reference 00:45:54 ## For more information see 00:45:54 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 00:45:54 ############################################# 00:45:54 00:45:54 # Disable IPv6 by setting to 0. Only needed in 00:45:54 # certain situations. 00:45:54 Ice.IPv6=1 00:45:54 00:45:54 # Glacier2Template IceSSL defaults and overrides, 00:45:54 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 00:45:54 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 00:45:54 # update the corresponding IceSSL. property. 00:45:54 omero.glacier2.IceSSL= 00:45:54 00:45:54 # Glacier2Template SSL maximum allowed protocol (mac bug) 00:45:54 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 00:45:54 # Glacier2Template SSL allowed cipher suites 00:45:54 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 00:45:54 # Glacier2Template SSL verification requirements 00:45:54 omero.glacier2.IceSSL.VerifyPeer=0 00:45:54 # Glacier2Template SSL allowed protocols 00:45:54 omero.glacier2.IceSSL.Protocols=tls1 00:45:54 00:45:54 # Override the default set of OMERO services. 00:45:54 # For example, to run OMERO.server with Blitz and Tables only 00:45:54 # (i.e. disable Processor, DropBox, Indexer, PixelData) 00:45:54 # set this to ``master:Blitz-0,Tables-0``. 00:45:54 # Also use this to distribute OMERO services across multiple nodes, 00:45:54 # for example: 00:45:54 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 00:45:54 # See 00:45:54 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 00:45:54 omero.server.nodedescriptors= 00:45:54 00:45:54 ############################################# 00:45:54 ## Darwin (OS X) specific defaults for templated configuration files only. 00:45:54 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 00:45:54 ## file. 00:45:54 ## Do not set these properties in ``omero config``, instead set the original 00:45:54 ## ``xxx.yyy`` property 00:45:54 ############################################# 00:45:54 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 00:45:54 00:45:54 ## (For documentation only) 00:45:54 # Name of the Python module to use when starting the Tables service 00:45:54 omero.tables.module=runTables 00:45:54 00:45:54 ############################################# 00:45:54 ## Server product name for release artifacts 00:45:54 ############################################# 00:45:54 product.name=OMERO.server 00:45:54 00:45:54 ############################################# 00:45:54 ### Properties below this marker are ignored by 00:45:54 ### omero.install.config_parser.PropertyParser 00:45:54 ### END 00:45:54 00:45:54 ############################################# 00:45:54 ## Library versions 00:45:54 ############################################# 00:45:54 ## 00:45:54 versions.findbugs=1.2.1 00:45:54 versions.ice36=3.6.5 00:45:54 versions.ice36_lib=36 00:45:54 ## internal 00:45:54 versions.omeroshares36=3.6.3 00:45:54 versions.omeromock36=3.6.3 00:45:54 versions.icedb36=3.6.3 00:45:54 versions.ipython=1.2.1 00:45:54 00:45:54 versions.janino=2.5.10 00:45:54 00:45:54 versions.reportng=1.1.1 00:45:54 00:45:54 versions.testng=7.5 00:45:54 versions.velocity=1.4 00:45:54 00:45:54 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 00:45:54 versions.omero-scripts-url=${versions.omero-pypi} 00:45:54 00:45:54 ### 00:45:54 ### Appended Values 00:45:54 ### 00:45:54 00:45:54 ## Internal dependencies' 00:45:54 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 00:45:54 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 00:45:54 + echo versions.scripts-prefix= 00:45:54 + echo versions.scripts=merge_ci 00:45:54 + cat /home/omero/workspace/OMERO-push/version.properties 00:45:54 + git commit -a -m 'Add version.properties to etc/omero.properties' 00:45:54 [detached HEAD 8b3c3c889a] Add version.properties to etc/omero.properties 00:45:54 1 file changed, 47 insertions(+), 7 deletions(-) 00:45:54 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 00:45:56 To github.com:snoopycrimecop/openmicroscopy.git 00:45:56 + 9ed1598646...8b3c3c889a HEAD -> merge_ci (forced update) 00:45:56 Finished: SUCCESS