Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins533461616180340324.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop /tmp/jenkins533461616180340324.sh: line 10: omero: command not found + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 469 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 462 Copied 2 artifacts from "OMERO-build-build" build number 492 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 1 [OMERO-server] $ /bin/bash -xe /tmp/jenkins2938105020386493971.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip + ZIP=OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-569-bce9091b12-ice36-b469 + unzip OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip Archive: OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/grid/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/profiles/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/error/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/server/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/misc/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/var/ inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/LICENSE.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/backup.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/build.properties inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/env.bat inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/env.sh inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/hibernate.properties inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/ice.config inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-cli.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/logback.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/mime.types inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/node1.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/node2.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/omero.properties inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/profiles/psql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/rollover.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/README inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/ice.config inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/master.cfg inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/templates/robot.template inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/etc/testdropbox.config inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/history.rst inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/activation.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/antlr.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/asm.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/base.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/btm.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-dbcp2.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-io.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-lang.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-lang3.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-logging.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-math.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-math3.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/commons-pool2.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/dom4j.jar inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/lib/client/ehcache.jar inflating: 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OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/django.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/dom4j.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/epl-v1.0.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/fbsd.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/freemarker.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/mit.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/path.txt inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/share/licenses/pil.txt inflating: 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OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-569-bce9091b12-ice36-b469/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-569-bce9091b12-ice36-b469.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-569-bce9091b12-ice36-b469 /home/omero/workspace/OMERO-server/OMERO.server ++ ls omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar + JAR=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar ++ basename omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar + JAR_NAME=omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar --2025-07-16 10:27:10-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 889211 (868K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 0K .......... .......... .......... .......... .......... 5% 3.84M 0s 50K .......... .......... .......... .......... .......... 11% 5.98M 0s 100K .......... .......... .......... .......... .......... 17% 20.9M 0s 150K .......... .......... .......... .......... .......... 23% 23.4M 0s 200K .......... .......... .......... .......... .......... 28% 8.24M 0s 250K .......... .......... .......... .......... .......... 34% 31.6M 0s 300K .......... .......... .......... .......... .......... 40% 56.3M 0s 350K .......... .......... .......... .......... .......... 46% 23.5M 0s 400K .......... .......... .......... .......... .......... 51% 39.9M 0s 450K .......... .......... .......... .......... .......... 57% 9.66M 0s 500K .......... .......... .......... .......... .......... 63% 25.0M 0s 550K .......... .......... .......... .......... .......... 69% 124M 0s 600K .......... .......... .......... .......... .......... 74% 18.1M 0s 650K .......... .......... .......... .......... .......... 80% 42.4M 0s 700K .......... .......... .......... .......... .......... 86% 9.70M 0s 750K .......... .......... .......... .......... .......... 92% 35.4M 0s 800K .......... .......... .......... .......... .......... 97% 20.8M 0s 850K .......... ........ 100% 228M=0.06s 2025-07-16 10:27:11 (14.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 73309 (72K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 0K .......... .......... .......... .......... .......... 69% 3.84M 0s 50K .......... .......... . 100% 62.6M=0.01s 2025-07-16 10:27:11 (5.36 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 63303 (62K) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 0K .......... .......... .......... .......... .......... 80% 4.48M 0s 50K .......... . 100% 6.54M=0.01s 2025-07-16 10:27:11 (4.76 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar --2025-07-16 10:27:11-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar Resolving repo1.maven.org (repo1.maven.org)... 146.75.72.209, 2a04:4e42:82::209 Connecting to repo1.maven.org (repo1.maven.org)|146.75.72.209|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 1271272 (1.2M) [application/java-archive] Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 0K .......... .......... .......... .......... .......... 4% 4.17M 0s 50K .......... .......... .......... .......... .......... 8% 5.21M 0s 100K .......... .......... .......... .......... .......... 12% 21.1M 0s 150K .......... .......... .......... .......... .......... 16% 16.0M 0s 200K .......... .......... .......... .......... .......... 20% 9.60M 0s 250K .......... .......... .......... .......... .......... 24% 29.9M 0s 300K .......... .......... .......... .......... .......... 28% 63.0M 0s 350K .......... .......... .......... .......... .......... 32% 17.2M 0s 400K .......... .......... .......... .......... .......... 36% 9.25M 0s 450K .......... .......... .......... .......... .......... 40% 145M 0s 500K .......... .......... .......... .......... .......... 44% 14.2M 0s 550K .......... .......... .......... .......... .......... 48% 123M 0s 600K .......... .......... .......... .......... .......... 52% 41.4M 0s 650K .......... .......... .......... .......... .......... 56% 9.27M 0s 700K .......... .......... .......... .......... .......... 60% 30.3M 0s 750K .......... .......... .......... .......... .......... 64% 13.8M 0s 800K .......... .......... .......... .......... .......... 68% 124M 0s 850K .......... .......... .......... .......... .......... 72% 10.1M 0s 900K .......... .......... .......... .......... .......... 76% 29.4M 0s 950K .......... .......... .......... .......... .......... 80% 22.9M 0s 1000K .......... .......... .......... .......... .......... 84% 35.7M 0s 1050K .......... .......... .......... .......... .......... 88% 9.33M 0s 1100K .......... .......... .......... .......... .......... 92% 29.6M 0s 1150K .......... .......... .......... .......... .......... 96% 23.4M 0s 1200K .......... .......... .......... .......... . 100% 30.6M=0.08s 2025-07-16 10:27:11 (15.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] + MS_ZIP=omero-ms-image-region-0.10.0_11.zip + wget -q https://github.com/ome/omero-ms-image-region/releases/download/2024.08.13/omero-ms-image-region-0.10.0_11.zip + unzip omero-ms-image-region-0.10.0_11.zip Archive: omero-ms-image-region-0.10.0_11.zip creating: omero-ms-image-region-0.10.0/ inflating: omero-ms-image-region-0.10.0/MemoFileRegenerationReadMe.md inflating: omero-ms-image-region-0.10.0/regen-memo-files.sh inflating: omero-ms-image-region-0.10.0/logback-memoizer.xml inflating: omero-ms-image-region-0.10.0/memo_regenerator.sql creating: omero-ms-image-region-0.10.0/conf/ inflating: omero-ms-image-region-0.10.0/conf/logback.xml inflating: omero-ms-image-region-0.10.0/conf/config.yaml inflating: omero-ms-image-region-0.10.0/memofile-regen-status.sh inflating: omero-ms-image-region-0.10.0/omero-ms-image-region.service creating: omero-ms-image-region-0.10.0/lib/ inflating: omero-ms-image-region-0.10.0/lib/omero-ms-image-region-0.10.0.jar inflating: omero-ms-image-region-0.10.0/lib/simpleclient_vertx-0.6.0.jar inflating: omero-ms-image-region-0.10.0/lib/omero-ms-core-0.9.0.jar inflating: omero-ms-image-region-0.10.0/lib/brave-instrumentation-http-5.6.8.jar inflating: omero-ms-image-region-0.10.0/lib/brave-5.6.8.jar inflating: omero-ms-image-region-0.10.0/lib/brave-http-4.13.6.jar inflating: omero-ms-image-region-0.10.0/lib/zipkin-sender-okhttp3-2.10.0.jar inflating: omero-ms-image-region-0.10.0/lib/omero-zarr-pixel-buffer-0.4.1.jar inflating: omero-ms-image-region-0.10.0/lib/omero-blitz-5.7.4.jar inflating: omero-ms-image-region-0.10.0/lib/omero-server-5.6.12.jar inflating: omero-ms-image-region-0.10.0/lib/omero-renderer-5.5.17.jar inflating: omero-ms-image-region-0.10.0/lib/omero-romio-5.7.7.jar inflating: omero-ms-image-region-0.10.0/lib/omero-common-5.6.7.jar inflating: omero-ms-image-region-0.10.0/lib/metrics-logback-3.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/logback-classic-1.3.14.jar inflating: omero-ms-image-region-0.10.0/lib/log4j-over-slf4j-1.7.32.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-web-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-config-yaml-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-config-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-micrometer-metrics-3.8.5.jar inflating: omero-ms-image-region-0.10.0/lib/micrometer-registry-prometheus-1.3.0.jar inflating: omero-ms-image-region-0.10.0/lib/OMEZarrReader-0.5.2.jar inflating: omero-ms-image-region-0.10.0/lib/collector-0.12.0.jar inflating: omero-ms-image-region-0.10.0/lib/simpleclient_hotspot-0.8.0.jar inflating: omero-ms-image-region-0.10.0/lib/picocli-4.1.4.jar inflating: omero-ms-image-region-0.10.0/lib/univocity-parsers-2.8.3.jar inflating: omero-ms-image-region-0.10.0/lib/icegrid-3.6.5.jar inflating: omero-ms-image-region-0.10.0/lib/gson-2.8.6.jar inflating: omero-ms-image-region-0.10.0/lib/caffeine-3.1.8.jar inflating: omero-ms-image-region-0.10.0/lib/jzarr-0.4.2.jar inflating: omero-ms-image-region-0.10.0/lib/s3fs-2.2.3.jar inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-s3-1.12.659.jar inflating: omero-ms-image-region-0.10.0/lib/simpleclient_common-0.7.0.jar inflating: omero-ms-image-region-0.10.0/lib/simpleclient-0.8.0.jar inflating: omero-ms-image-region-0.10.0/lib/brave-core-4.13.6.jar inflating: omero-ms-image-region-0.10.0/lib/zipkin-reporter-2.10.0.jar inflating: omero-ms-image-region-0.10.0/lib/zipkin-2.15.0.jar inflating: omero-ms-image-region-0.10.0/lib/omero-model-5.6.15.jar inflating: omero-ms-image-region-0.10.0/lib/formats-gpl-7.3.1.jar inflating: omero-ms-image-region-0.10.0/lib/formats-bsd-7.3.1.jar inflating: omero-ms-image-region-0.10.0/lib/formats-api-7.3.1.jar inflating: omero-ms-image-region-0.10.0/lib/ome-xml-6.3.6.jar inflating: omero-ms-image-region-0.10.0/lib/ome-codecs-1.0.3.jar inflating: omero-ms-image-region-0.10.0/lib/metakit-5.3.7.jar inflating: omero-ms-image-region-0.10.0/lib/ome-poi-5.3.9.jar inflating: omero-ms-image-region-0.10.0/lib/ome-common-6.0.22.jar inflating: omero-ms-image-region-0.10.0/lib/minio-5.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/okhttp-3.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/logback-core-1.3.14.jar inflating: omero-ms-image-region-0.10.0/lib/cdm-core-5.3.3.jar inflating: omero-ms-image-region-0.10.0/lib/jcl-over-slf4j-1.7.5.jar inflating: omero-ms-image-region-0.10.0/lib/calcite-core-1.20.0.jar inflating: omero-ms-image-region-0.10.0/lib/udunits-5.3.3.jar inflating: omero-ms-image-region-0.10.0/lib/httpservices-5.3.3.jar inflating: omero-ms-image-region-0.10.0/lib/spring-security-ldap-4.2.4.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-ldap-core-2.3.2.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/avatica-core-1.15.0.jar inflating: omero-ms-image-region-0.10.0/lib/json-path-2.4.0.jar inflating: omero-ms-image-region-0.10.0/lib/avatica-metrics-1.15.0.jar inflating: omero-ms-image-region-0.10.0/lib/metrics-graphite-3.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/metrics-jvm-3.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/metrics-core-3.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/hibernate-search-3.4.2.Final.jar inflating: omero-ms-image-region-0.10.0/lib/hibernate-core-3.6.10.Final.jar inflating: omero-ms-image-region-0.10.0/lib/bufr-3.0.jar inflating: omero-ms-image-region-0.10.0/lib/hibernate-commons-annotations-3.2.0.Final.jar inflating: omero-ms-image-region-0.10.0/lib/hibernate-search-analyzers-3.4.2.Final.jar inflating: omero-ms-image-region-0.10.0/lib/jxrlib-all-0.2.4.jar inflating: omero-ms-image-region-0.10.0/lib/native-lib-loader-2.4.0.jar inflating: omero-ms-image-region-0.10.0/lib/solr-analysis-extras-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/solr-core-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/solr-solrj-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/slf4j-api-2.0.9.jar inflating: omero-ms-image-region-0.10.0/lib/lettuce-core-5.2.0.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-jdbc-client-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/kaitai-struct-runtime-0.8.jar inflating: omero-ms-image-region-0.10.0/lib/aggdesigner-algorithm-6.0.jar inflating: omero-ms-image-region-0.10.0/lib/commons-lang-2.6.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-web-common-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-auth-common-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-bridge-common-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-sql-common-3.8.1.jar inflating: omero-ms-image-region-0.10.0/lib/vertx-core-3.8.5.jar inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-kms-1.12.659.jar inflating: omero-ms-image-region-0.10.0/lib/aws-java-sdk-core-1.12.659.jar inflating: omero-ms-image-region-0.10.0/lib/jmespath-java-1.12.659.jar inflating: omero-ms-image-region-0.10.0/lib/jackson-dataformat-cbor-2.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/jackson-databind-2.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/jackson-annotations-2.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/esri-geometry-api-2.2.0.jar inflating: omero-ms-image-region-0.10.0/lib/jackson-core-2.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/jackson-dataformat-yaml-2.14.2.jar inflating: omero-ms-image-region-0.10.0/lib/micrometer-core-1.3.0.jar inflating: omero-ms-image-region-0.10.0/lib/HdrHistogram-2.1.11.jar inflating: omero-ms-image-region-0.10.0/lib/javax.activation-1.2.0.jar inflating: omero-ms-image-region-0.10.0/lib/httpmime-4.5.9.jar inflating: omero-ms-image-region-0.10.0/lib/google-http-client-xml-1.20.0.jar inflating: omero-ms-image-region-0.10.0/lib/google-http-client-1.20.0.jar inflating: omero-ms-image-region-0.10.0/lib/httpclient-4.5.13.jar inflating: omero-ms-image-region-0.10.0/lib/serializer-2.7.3.jar inflating: omero-ms-image-region-0.10.0/lib/xalan-2.7.3.jar inflating: omero-ms-image-region-0.10.0/lib/commons-dbcp2-2.6.0.jar inflating: omero-ms-image-region-0.10.0/lib/spring-jms-4.3.14.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-messaging-4.3.14.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-orm-4.3.14.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-jdbc-4.3.14.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-tx-4.3.14.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-security-core-4.2.4.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-context-support-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-context-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-aop-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-beans-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-expression-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/spring-core-4.3.22.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/commons-logging-1.2.jar inflating: omero-ms-image-region-0.10.0/lib/snakeyaml-2.0.jar inflating: omero-ms-image-region-0.10.0/lib/postgresql-42.2.29.jar inflating: omero-ms-image-region-0.10.0/lib/calcite-linq4j-1.20.0.jar inflating: omero-ms-image-region-0.10.0/lib/guava-32.0.0-jre.jar inflating: omero-ms-image-region-0.10.0/lib/checker-qual-3.37.0.jar inflating: omero-ms-image-region-0.10.0/lib/error_prone_annotations-2.21.1.jar inflating: omero-ms-image-region-0.10.0/lib/jblosc-1.0.1.jar inflating: omero-ms-image-region-0.10.0/lib/tika-core-1.5.jar inflating: omero-ms-image-region-0.10.0/lib/jsr305-3.0.2.jar inflating: omero-ms-image-region-0.10.0/lib/okio-1.17.2.jar inflating: omero-ms-image-region-0.10.0/lib/glacier2-3.6.5.jar inflating: omero-ms-image-region-0.10.0/lib/ice-3.6.5.jar inflating: omero-ms-image-region-0.10.0/lib/netty-handler-proxy-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-codec-http2-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-codec-http-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-handler-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-resolver-dns-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-codec-socks-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-codec-dns-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-codec-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-transport-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-buffer-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-resolver-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/netty-common-4.1.42.Final.jar inflating: omero-ms-image-region-0.10.0/lib/reactor-core-3.3.0.RELEASE.jar inflating: omero-ms-image-region-0.10.0/lib/c3p0-0.9.5.4.jar inflating: omero-ms-image-region-0.10.0/lib/LatencyUtils-2.0.3.jar inflating: omero-ms-image-region-0.10.0/lib/httpcore-4.4.13.jar inflating: omero-ms-image-region-0.10.0/lib/commons-codec-1.15.jar inflating: omero-ms-image-region-0.10.0/lib/btm-3.0.0-mk1.jar inflating: omero-ms-image-region-0.10.0/lib/commons-collections4-4.1.jar inflating: omero-ms-image-region-0.10.0/lib/javax.mail-1.6.2.jar inflating: omero-ms-image-region-0.10.0/lib/java-image-scaling-0.8.6.jar inflating: omero-ms-image-region-0.10.0/lib/jhdf5-19.04.1.jar inflating: omero-ms-image-region-0.10.0/lib/base-18.09.0.jar inflating: omero-ms-image-region-0.10.0/lib/commons-io-2.7.jar inflating: omero-ms-image-region-0.10.0/lib/joda-time-2.12.2.jar inflating: omero-ms-image-region-0.10.0/lib/jdom2-2.0.6.jar inflating: omero-ms-image-region-0.10.0/lib/protobuf-java-3.9.1.jar inflating: omero-ms-image-region-0.10.0/lib/jcommander-1.78.jar inflating: omero-ms-image-region-0.10.0/lib/re2j-1.3.jar inflating: omero-ms-image-region-0.10.0/lib/junit-4.12.jar inflating: omero-ms-image-region-0.10.0/lib/jna-4.2.2.jar inflating: omero-ms-image-region-0.10.0/lib/reactive-streams-1.0.3.jar inflating: omero-ms-image-region-0.10.0/lib/mchange-commons-java-0.2.15.jar inflating: omero-ms-image-region-0.10.0/lib/commons-lang3-3.10.jar inflating: omero-ms-image-region-0.10.0/lib/sketches-core-0.9.0.jar inflating: omero-ms-image-region-0.10.0/lib/janino-3.0.11.jar inflating: omero-ms-image-region-0.10.0/lib/commons-compiler-3.0.11.jar inflating: omero-ms-image-region-0.10.0/lib/activation-1.1.jar inflating: omero-ms-image-region-0.10.0/lib/filters-2.0.235.jar inflating: omero-ms-image-region-0.10.0/lib/kryo-5.4.0.jar inflating: omero-ms-image-region-0.10.0/lib/specification-6.3.6.jar inflating: omero-ms-image-region-0.10.0/lib/ome-jai-0.1.4.jar inflating: omero-ms-image-region-0.10.0/lib/aircompressor-0.21.jar inflating: omero-ms-image-region-0.10.0/lib/hamcrest-core-1.3.jar inflating: omero-ms-image-region-0.10.0/lib/aopalliance-1.0.jar inflating: omero-ms-image-region-0.10.0/lib/commons-pool2-2.6.1.jar inflating: omero-ms-image-region-0.10.0/lib/memory-0.9.0.jar inflating: omero-ms-image-region-0.10.0/lib/failureaccess-1.0.1.jar inflating: omero-ms-image-region-0.10.0/lib/listenablefuture-9999.0-empty-to-avoid-conflict-with-guava.jar inflating: omero-ms-image-region-0.10.0/lib/j2objc-annotations-2.8.jar inflating: omero-ms-image-region-0.10.0/lib/reflectasm-1.11.9.jar inflating: omero-ms-image-region-0.10.0/lib/objenesis-3.3.jar inflating: omero-ms-image-region-0.10.0/lib/minlog-1.3.1.jar inflating: omero-ms-image-region-0.10.0/lib/xpp3-1.1.4c.jar inflating: omero-ms-image-region-0.10.0/lib/antlr-2.7.6.jar inflating: omero-ms-image-region-0.10.0/lib/commons-collections-3.1.jar inflating: omero-ms-image-region-0.10.0/lib/dom4j-1.6.1.jar inflating: omero-ms-image-region-0.10.0/lib/hibernate-jpa-2.0-api-1.0.1.Final.jar inflating: omero-ms-image-region-0.10.0/lib/jta-1.1.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-smartcn-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-stempel-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-misc-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-spellchecker-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-analyzers-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-highlighter-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-memory-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-spatial-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/lucene-core-3.1.0.jar inflating: omero-ms-image-region-0.10.0/lib/ome-mdbtools-5.3.3.jar inflating: omero-ms-image-region-0.10.0/lib/sqlite-jdbc-3.28.0.jar inflating: omero-ms-image-region-0.10.0/lib/turbojpeg-7.3.1.jar inflating: omero-ms-image-region-0.10.0/lib/jgoodies-forms-1.7.2.jar inflating: omero-ms-image-region-0.10.0/lib/perf4j-0.9.16.jar inflating: omero-ms-image-region-0.10.0/lib/json-20231013.jar inflating: omero-ms-image-region-0.10.0/lib/xml-apis-1.4.01.jar inflating: omero-ms-image-region-0.10.0/lib/jgoodies-common-1.7.0.jar inflating: omero-ms-image-region-0.10.0/lib/solr-commons-csv-3.1.0.jar creating: omero-ms-image-region-0.10.0/bin/ inflating: omero-ms-image-region-0.10.0/bin/memoregenerator.bat inflating: omero-ms-image-region-0.10.0/bin/memoregenerator inflating: omero-ms-image-region-0.10.0/bin/omero-ms-image-region inflating: omero-ms-image-region-0.10.0/bin/omero-ms-image-region.bat inflating: omero-ms-image-region-0.10.0/README.md + rm -f omero-ms-image-region-0.10.0_11.zip + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.1.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.1.1 WARNING: There was an error checking the latest version of pip. + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.8 MB/s eta 0:00:00 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached markdown-3.8.2-py3-none-any.whl.metadata (5.1 kB) Using cached markdown-3.8.2-py3-none-any.whl (106 kB) Installing collected packages: markdown Successfully installed markdown-3.8.2 + pip install reportlab Collecting reportlab Using cached reportlab-4.4.2-py3-none-any.whl.metadata (1.8 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting charset-normalizer (from reportlab) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (35 kB) Using cached reportlab-4.4.2-py3-none-any.whl (2.0 MB) Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) Installing collected packages: pillow, charset-normalizer, reportlab Successfully installed charset-normalizer-3.4.2 pillow-11.3.0 reportlab-4.4.2 + pip install pyarrow Collecting pyarrow Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) Using cached pyarrow-20.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.3 MB) Installing collected packages: pyarrow Successfully installed pyarrow-20.0.0 + pip install omego Collecting omego Using cached omego-0.7.0-py3-none-any.whl Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (62 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.9 kB) Collecting typing-extensions>=4.4.0 (from tables) Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) Collecting platformdirs (from blosc2>=2.3.0->tables) Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB) Collecting requests (from blosc2>=2.3.0->tables) Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.2) Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB) Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB) Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) Using cached blosc2-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.4 MB) Using cached numexpr-2.11.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (401 kB) Using cached numpy-2.3.1-cp311-cp311-manylinux_2_28_x86_64.whl (16.9 MB) Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB) Using cached msgpack-1.1.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (429 kB) Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB) Using cached packaging-25.0-py3-none-any.whl (66 kB) Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Using cached requests-2.32.4-py3-none-any.whl (64 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) Using cached certifi-2025.7.14-py3-none-any.whl (162 kB) Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables Successfully installed blosc2-3.5.1 certifi-2025.7.14 idna-3.10 msgpack-1.1.1 ndindex-1.10.0 numexpr-2.11.0 numpy-2.3.1 packaging-25.0 platformdirs-4.3.8 py-cpuinfo-9.0.0 requests-2.32.4 tables-3.10.2 typing-extensions-4.14.1 urllib3-2.5.0 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (4.0 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached MarkupSafe-3.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (23 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.2 jinja2-3.1.6 + pip install boto3 Collecting boto3 Downloading boto3-1.39.6-py3-none-any.whl.metadata (6.6 kB) Collecting botocore<1.40.0,>=1.39.6 (from boto3) Downloading botocore-1.39.6-py3-none-any.whl.metadata (5.7 kB) Collecting jmespath<2.0.0,>=0.7.1 (from boto3) Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) Collecting s3transfer<0.14.0,>=0.13.0 (from boto3) Using cached s3transfer-0.13.0-py3-none-any.whl.metadata (1.7 kB) Collecting python-dateutil<3.0.0,>=2.1 (from botocore<1.40.0,>=1.39.6->boto3) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.40.0,>=1.39.6->boto3) (2.5.0) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.40.0,>=1.39.6->boto3) (1.17.0) Downloading boto3-1.39.6-py3-none-any.whl (139 kB) Downloading botocore-1.39.6-py3-none-any.whl (13.8 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 13.8/13.8 MB 23.0 MB/s eta 0:00:00 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached s3transfer-0.13.0-py3-none-any.whl (85 kB) Installing collected packages: python-dateutil, jmespath, botocore, s3transfer, boto3 Successfully installed boto3-1.39.6 botocore-1.39.6 jmespath-1.0.1 python-dateutil-2.9.0.post0 s3transfer-0.13.0 + pip install smart-open Collecting smart-open Using cached smart_open-7.3.0.post1-py3-none-any.whl.metadata (24 kB) Collecting wrapt (from smart-open) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.4 kB) Using cached smart_open-7.3.0.post1-py3-none-any.whl (61 kB) Using cached wrapt-1.17.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (83 kB) Installing collected packages: wrapt, smart-open Successfully installed smart-open-7.3.0.post1 wrapt-1.17.2 + pip install omero-py Collecting omero-py Using cached omero_py-5.21.0-py3-none-any.whl.metadata (6.5 kB) Collecting urllib3<2 (from omero-py) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0) Collecting PyYAML (from omero-py) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.4) Collecting portalocker (from omero-py) Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.7.14) Using cached omero_py-5.21.0-py3-none-any.whl (2.8 MB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) Installing collected packages: appdirs, urllib3, PyYAML, portalocker, omero-py Attempting uninstall: urllib3 Found existing installation: urllib3 2.5.0 Uninstalling urllib3-2.5.0: Successfully uninstalled urllib3-2.5.0 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 omero-py-5.21.0 portalocker-3.2.0 urllib3-1.26.20 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-w6z17mal/omero-metadata_a53e99fa4f034571a06d690a0792e8e8 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-w6z17mal/omero-metadata_a53e99fa4f034571a06d690a0792e8e8 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit bad83f133169337ecddc46cc48c654307b61eeec Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.2) Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) Collecting pandas (from omero-metadata) Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (91 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.2) Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0) Collecting pytz>=2020.1 (from pandas->omero-metadata) Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->omero-metadata) Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.7.14) Using cached pandas-2.3.1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (12.4 MB) Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=b8f0e78574cd52c07a92bf89fb560ddf8fac3f038920ba8d2b6024bca8f0c858 Stored in directory: /tmp/pip-ephem-wheel-cache-1ix6l3hf/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, pandas, omero-metadata Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.1 pytz-2025.2 tzdata-2025.2 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-weojsfo1/omero-cli-render_8ec8db9894e84271ad0acff82c0c9d86 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-weojsfo1/omero-cli-render_8ec8db9894e84271ad0acff82c0c9d86 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit e3a0c81b7864b14e50901800005354203499341a Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.2) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.7.14) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=99dc306976d75267c09e5ed542abfe08caa7c87e05991796dd9e804df3362765 Stored in directory: /tmp/pip-ephem-wheel-cache-z_makzhh/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-_pkhr7t4/omero-cli-duplicate_67d098ab51eb4606adb11bebb9c81142 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-_pkhr7t4/omero-cli-duplicate_67d098ab51eb4606adb11bebb9c81142 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 84b349ae9f203dcbd3499fd20b027964fbc3372f Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.7.14) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=51658f29b7639ea15d0672bb862e1c0dc72c9e6adb6c97629a738920cca9292d Stored in directory: /tmp/pip-ephem-wheel-cache-cio94m4u/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.7.14) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.0) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.7.14) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=9fd7cc673cb276cd6274972833b23392b69d5ebe2031c18cd4646c3367c3b5d2 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.1.dev0.tar.gz Processing ./omero_marshal-0.9.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88126 sha256=d27cd50d87a3e62fddc113f6a63718c69a1c22958fb8b89e6c801828ef9d13fd Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.1.dev0 + for x in *.tar.gz + pip install -U omero_py-5.21.1.dev0.tar.gz Processing ./omero_py-5.21.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.3.1) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (11.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (2.32.4) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.1.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.1.dev0) (2025.7.14) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.21.1.dev0-py3-none-any.whl size=2783499 sha256=81fe507fc45555b5362d60dbfa53c4606a715b118145062fc0958e06e86e7e60 Stored in directory: /home/omero/.cache/pip/wheels/32/8a/68/256ffa196397e2ec55e537fc96a9b9c4178b3eab623cd87f3d Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.21.0 Uninstalling omero-py-5.21.0: Successfully uninstalled omero-py-5.21.0 Successfully installed omero-py-5.21.1.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.9.2.dev0.tar.gz Processing ./omero_scripts-5.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=3700cbf72892e739a386f103fe647de69d5cdbf98371a0beeb2dd66e42d2bd93 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.9.2.dev0 + for x in *.tar.gz + pip install -U omero_web-5.29.2.dev0.tar.gz Processing ./omero_web-5.29.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (5.21.1.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.2.dev0) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.2.dev0) Using cached django-4.2.23-py3-none-any.whl.metadata (4.2 kB) Collecting django-pipeline (from omero-web==5.29.2.dev0) Using cached django_pipeline-4.0.0-py3-none-any.whl.metadata (5.8 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.29.2.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting django-csp (from omero-web==5.29.2.dev0) Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.29.2.dev0) Using cached whitenoise-6.9.0-py3-none-any.whl.metadata (3.6 kB) Collecting gunicorn>=19.3 (from omero-web==5.29.2.dev0) Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (0.9.1.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (11.3.0) Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (2025.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (3.2.0) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.2.dev0) (25.0) Collecting importlib-resources (from omero-web==5.29.2.dev0) Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0) Using cached asgiref-3.9.1-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.2.dev0) Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) Requirement already satisfied: urllib3<2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.26.20) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.3.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (6.0.2) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.2.dev0) (2.32.4) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.2.dev0) (65.5.1) Collecting wheel (from django-pipeline->omero-web==5.29.2.dev0) Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.4.2) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (3.10) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.2.dev0) (2025.7.14) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django-4.2.23-py3-none-any.whl (8.0 MB) Using cached asgiref-3.9.1-py3-none-any.whl (23 kB) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) Using cached whitenoise-6.9.0-py3-none-any.whl (20 kB) Using cached django_csp-4.0-py3-none-any.whl (25 kB) Using cached django_pipeline-4.0.0-py3-none-any.whl (75 kB) Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.29.2.dev0-py3-none-any.whl size=2817943 sha256=25efbc42629e0dee8aa4545eb17bd8926b6498206ead4fbe82529f962127a8fe Stored in directory: /home/omero/.cache/pip/wheels/8b/82/d4/64ba3d9f4efaa51110316831003d98aee03867a3665750278c Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web Successfully installed Django-4.2.23 asgiref-3.9.1 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.0.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.2.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.9.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2025-07-16 10:28:24-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 125072 (122K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 40% 3.94M 0s 50K .......... .......... .......... .......... .......... 81% 11.5M 0s 100K .......... .......... .. 100% 4.48M=0.02s 2025-07-16 10:28:24 (5.56 MB/s) - ‘Figure_To_Pdf.py’ saved [125072/125072] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.mail.from qa@openmicroscopy.org.uk + omero config set omero.mail.host smtp.dundee.ac.uk + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' + omero certificates OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbcommand => upgrade 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbhost => localhost 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbname => OMERO-server 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbpass => omero 2025-07-16 10:28:42,488 [ omego.db] DEBUG dbuser => omero 2025-07-16 10:28:42,489 [ omego.db] DEBUG rootpass => omero 2025-07-16 10:28:42,489 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2025-07-16 10:28:42,489 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-569-bce9091b12-ice36-b469 5.21.1.dev0 2025-07-16 10:28:43,778 [omego.extern] INFO Completed [1.289 s] 2025-07-16 10:28:43,778 [omego.extern] DEBUG Using omero CLI from omero 2025-07-16 10:28:43,778 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2025-07-16 10:28:43,778 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-07-16 10:28:43,778 [omego.extern] INFO Executing : omero config get --show-password 2025-07-16 10:28:45,055 [omego.extern] INFO Completed [1.277 s] 2025-07-16 10:28:45,055 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-07-16 10:28:45,055 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2025-07-16 10:28:45,061 [omego.extern] INFO Completed [0.006 s] 2025-07-16 10:28:45,061 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n' 2025-07-16 10:28:45,061 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9 2025-07-16 10:28:45,061 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-07-16 10:28:45,061 [omego.extern] INFO Executing : omero config get --show-password 2025-07-16 10:28:46,340 [omego.extern] INFO Completed [1.279 s] 2025-07-16 10:28:46,341 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-07-16 10:28:46,341 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2025-07-16 10:28:46,351 [omego.extern] INFO Completed [0.010 s] 2025-07-16 10:28:46,351 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.9") at port "5432".\n' 2025-07-16 10:28:46,351 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-07-16 10:28:46,351 [omego.extern] INFO Running [current environment]: omero config get --show-password 2025-07-16 10:28:46,351 [omego.extern] INFO Executing : omero config get --show-password 2025-07-16 10:28:47,582 [omego.extern] INFO Completed [1.231 s] 2025-07-16 10:28:47,582 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2025-07-16 10:28:47,582 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2025-07-16 10:28:47,593 [omego.extern] INFO Completed [0.011 s] 2025-07-16 10:28:47,593 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2025-07-16 10:28:47,593 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2025-07-16 10:28:47,595 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 11.0.25 (/usr/bin/java) Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.9 (/usr/bin/psql) Commands: openssl version 3.2.24 (/usr/bin/openssl) Component: OMERO.py 5.21.1.dev0 Component: OMERO.server 5.6.3-569-bce9091b12-ice36-b469 Server: icegridnode running Server: Blitz-0 active (pid = 13396, enabled) Server: Indexer-0 activating (enabled) Server: OMERO.Glacier2 active (pid = 13425, enabled) Server: OMERO.IceStorm active (pid = 13449, enabled) Server: Processor-0 active (pid = 13432, enabled) Server: Tables-0 active (pid = 13452, enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 32.1 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 238 B Log files: MonitorServer.log n/a Log files: Processor-0.log 735 B Log files: Tables-0.log 961 B Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.5 KB Log files: Total size 0.06 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx7200m JVM settings: Indexer-${index} -Xmx4800m JVM settings: PixelData-${index} -Xmx7200m JVM settings: Repository-${index} -Xmx4800m Jar: lib/server/formats-api.jar Bio-Formats API 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.3.0-SNAPSHOT 16 July 2025 1a3c75b150ae11f8dfc6f632d1198414d59a1413 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/ome-common.jar OME Common Java 6.0.27-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 16 July 2025 b70983cece011fb6557b06cf931c97046fa37c69 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.5.1-SNAPSHOT ce40b5862f64dde6497b4860b3a02ef8deb2d0e4 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS