Uses of Class
dev.zarr.zarrjava.ZarrException

Packages that use ZarrException

Package	Description
dev.zarr.zarrjava.core
dev.zarr.zarrjava.core.codec
dev.zarr.zarrjava.core.codec.core
dev.zarr.zarrjava.v2
dev.zarr.zarrjava.v2.codec
dev.zarr.zarrjava.v2.codec.core
dev.zarr.zarrjava.v3
dev.zarr.zarrjava.v3.codec
dev.zarr.zarrjava.v3.codec.core

Uses of ZarrException in dev.zarr.zarrjava.core

Methods in dev.zarr.zarrjava.core that throw ZarrException

Modifier and Type	Method	Description
abstract Attributes	ArrayMetadata.attributes()
abstract Attributes	GroupMetadata.attributes()
abstract Node	Group.get(String key)
<T> T[]	Attributes.getArray(String key, Class<T> clazz)
static Array	Array.open(StoreHandle storeHandle)	Opens an existing Zarr array at a specified storage location.
static Array	Array.open(String path)	Opens an existing Zarr array at a specified storage location.
static Array	Array.open(Path path)	Opens an existing Zarr array at a specified storage location.
static Group	Group.open(StoreHandle storeHandle)	Opens an existing Zarr group at a specified storage location.
static Group	Group.open(String path)	Opens an existing Zarr group at a specified storage location.
static Group	Group.open(Path path)	Opens an existing Zarr group at a specified storage location.
static Node	Node.open(StoreHandle storeHandle)	Opens an existing Zarr array or group at a specified storage location.
static Node	Node.open(String path)	Opens an existing Zarr array or group at a specified storage location.
static Node	Node.open(Path path)	Opens an existing Zarr array or group at a specified storage location.
static Object	ArrayMetadata.parseFillValue(Object fillValue, DataType dataType)
ucar.ma2.Array	Array.ArrayAccessor.read()
ucar.ma2.Array	Array.read()	Reads the entire Zarr array into an ucar.ma2.Array.
ucar.ma2.Array	Array.read(boolean parallel)	Reads the entire Zarr array into an ucar.ma2.Array.
ucar.ma2.Array	Array.read(long[] offset, int[] shape)	Reads a part of the Zarr array based on a requested offset and shape into an ucar.ma2.Array.
ucar.ma2.Array	Array.read(long[] offset, int[] shape, boolean parallel)	Reads a part of the Zarr array based on a requested offset and shape into an ucar.ma2.Array.
ucar.ma2.Array	Array.readChunk(long[] chunkCoords)	Reads one chunk of the Zarr array as specified by the chunk coordinates into an ucar.ma2.Array.
void	Array.ArrayAccessor.write(ucar.ma2.Array content)
void	Array.writeChunk(long[] chunkCoords, ucar.ma2.Array chunkArray)	Writes one chunk into the Zarr array as specified by the chunk coordinates.

Constructors in dev.zarr.zarrjava.core that throw ZarrException

Modifier	Constructor	Description
protected	Array(StoreHandle storeHandle)
	ArrayMetadata(long[] shape, Object fillValue, DataType dataType)

Uses of ZarrException in dev.zarr.zarrjava.core.codec

Methods in dev.zarr.zarrjava.core.codec that throw ZarrException

Modifier and Type	Method	Description
default long	Codec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	CodecPipeline.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
abstract ucar.ma2.Array	ArrayArrayCodec.decode(ucar.ma2.Array chunkArray)
abstract ucar.ma2.Array	ArrayBytesCodec.decode(ByteBuffer chunkBytes)
abstract ucar.ma2.Array	ArrayBytesCodec.WithPartialDecode.decode(ByteBuffer shardBytes)
abstract ByteBuffer	BytesBytesCodec.decode(ByteBuffer chunkBytes)
ucar.ma2.Array	CodecPipeline.decode(ByteBuffer chunkBytes)
protected abstract ucar.ma2.Array	ArrayBytesCodec.WithPartialDecode.decodePartial(StoreHandle handle, long[] offset, int[] shape)
ucar.ma2.Array	CodecPipeline.decodePartial(StoreHandle storeHandle, long[] offset, int[] shape)
abstract ucar.ma2.Array	ArrayArrayCodec.encode(ucar.ma2.Array chunkArray)
abstract ByteBuffer	ArrayBytesCodec.encode(ucar.ma2.Array chunkArray)
abstract ByteBuffer	ArrayBytesCodec.WithPartialDecode.encode(ucar.ma2.Array shardArray)
abstract ByteBuffer	BytesBytesCodec.encode(ByteBuffer chunkBytes)
ByteBuffer	CodecPipeline.encode(ucar.ma2.Array chunkArray)
ArrayMetadata.CoreArrayMetadata	AbstractCodec.resolveArrayMetadata()
ArrayMetadata.CoreArrayMetadata	Codec.resolveArrayMetadata()
void	AbstractCodec.setCoreArrayMetadata(ArrayMetadata.CoreArrayMetadata arrayMetadata)
void	Codec.setCoreArrayMetadata(ArrayMetadata.CoreArrayMetadata codecArrayMetadata)

Constructors in dev.zarr.zarrjava.core.codec that throw ZarrException

Modifier	Constructor	Description
	CodecPipeline(Codec[] codecs, ArrayMetadata.CoreArrayMetadata arrayMetadata)

Uses of ZarrException in dev.zarr.zarrjava.core.codec.core

Methods in dev.zarr.zarrjava.core.codec.core that throw ZarrException

Modifier and Type	Method	Description
ByteBuffer	BloscCodec.decode(ByteBuffer chunkBytes)
ucar.ma2.Array	BytesCodec.decode(ByteBuffer chunkBytes)
ByteBuffer	BytesCodec.encode(ucar.ma2.Array chunkArray)
protected abstract ByteOrder	BytesCodec.getByteOrder()

Uses of ZarrException in dev.zarr.zarrjava.v2

Methods in dev.zarr.zarrjava.v2 that throw ZarrException

Modifier and Type	Method	Description
Attributes	ArrayMetadata.attributes()
Attributes	GroupMetadata.attributes()
ArrayMetadata	ArrayMetadataBuilder.build()
static Array	Array.create(StoreHandle storeHandle, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(StoreHandle storeHandle, ArrayMetadata arrayMetadata, boolean existsOk)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(StoreHandle storeHandle, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper, boolean existsOk)
static Array	Array.create(String path, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(Path path, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Group	Group.create(StoreHandle storeHandle)
static Group	Group.create(StoreHandle storeHandle, Attributes attributes)
static Group	Group.create(String path)
static Group	Group.create(String path, Attributes attributes)
static Group	Group.create(Path path)
static Group	Group.create(Path path, Attributes attributes)
Array	Group.createArray(String key, ArrayMetadata arrayMetadata)
Array	Group.createArray(String key, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper)
Group	Group.createGroup(String key)
Node	Group.get(String key)
static Array	Array.open(StoreHandle storeHandle)	Opens an existing Zarr array at a specified storage location.
static Array	Array.open(String path)	Opens an existing Zarr array at a specified storage location.
static Array	Array.open(Path path)	Opens an existing Zarr array at a specified storage location.
static Node	Node.open(StoreHandle storeHandle)	Opens an existing Zarr array or group at a specified storage location.
static Node	Node.open(String path)
static Node	Node.open(Path path)
Array	Array.resize(long[] newShape)	Sets a new shape for the Zarr array.
Array	Array.setAttributes(Attributes newAttributes)	Sets the attributes of the Zarr array.
Array	Array.updateAttributes(Function<Attributes,Attributes> attributeMapper)	Updates the attributes of the Zarr array.

Constructors in dev.zarr.zarrjava.v2 that throw ZarrException

Modifier	Constructor	Description
protected	Array(StoreHandle storeHandle, ArrayMetadata arrayMetadata)
	ArrayMetadata(int zarrFormat, long[] shape, int[] chunks, DataType dataType, Object fillValue, Order order, Codec[] filters, Codec compressor, Separator dimensionSeparator)
	ArrayMetadata(int zarrFormat, long[] shape, int[] chunks, DataType dataType, Object fillValue, Order order, Codec[] filters, Codec compressor, Separator dimensionSeparator, Attributes attributes)
	GroupMetadata()
	GroupMetadata(int zarrFormat, Attributes attributes)
	GroupMetadata(Attributes attributes)

Uses of ZarrException in dev.zarr.zarrjava.v2.codec

Methods in dev.zarr.zarrjava.v2.codec that throw ZarrException

Modifier and Type	Method	Description
Codec	Codec.evolveFromCoreArrayMetadata(ArrayMetadata.CoreArrayMetadata arrayMetadata)

Uses of ZarrException in dev.zarr.zarrjava.v2.codec.core

Methods in dev.zarr.zarrjava.v2.codec.core that throw ZarrException

Modifier and Type	Method	Description
ByteBuffer	ZlibCodec.decode(ByteBuffer chunkBytes)
ByteBuffer	BloscCodec.encode(ByteBuffer chunkBytes)
ByteBuffer	ZlibCodec.encode(ByteBuffer chunkBytes)
BloscCodec	BloscCodec.evolveFromCoreArrayMetadata(ArrayMetadata.CoreArrayMetadata arrayMetadata)

Constructors in dev.zarr.zarrjava.v2.codec.core that throw ZarrException

Modifier	Constructor	Description
	BloscCodec(com.scalableminds.bloscjava.Blosc.Compressor cname, com.scalableminds.bloscjava.Blosc.Shuffle shuffle, int clevel, int typesize, int blocksize)
	ZlibCodec(int level)

Uses of ZarrException in dev.zarr.zarrjava.v3

Methods in dev.zarr.zarrjava.v3 that throw ZarrException

Modifier and Type	Method	Description
Attributes	ArrayMetadata.attributes()
Attributes	GroupMetadata.attributes()
ArrayMetadata	ArrayMetadataBuilder.build()
static Array	Array.create(StoreHandle storeHandle, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(StoreHandle storeHandle, ArrayMetadata arrayMetadata, boolean existsOk)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(StoreHandle storeHandle, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper, boolean existsOk)	Creates a new Zarr array at a specified storage location.
static Array	Array.create(String path, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(String path, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper, boolean existsOk)
static Array	Array.create(Path path, ArrayMetadata arrayMetadata)	Creates a new Zarr array with the provided metadata at a specified storage location.
static Array	Array.create(Path path, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper, boolean existsOk)
static Group	Group.create(StoreHandle storeHandle)
static Group	Group.create(StoreHandle storeHandle, Attributes attributes)
static Group	Group.create(String path)
static Group	Group.create(String path, GroupMetadata groupMetadata)
static Group	Group.create(Path path)
static Group	Group.create(Path path, GroupMetadata groupMetadata)
Array	Group.createArray(String key, ArrayMetadata arrayMetadata)
Array	Group.createArray(String key, Function<ArrayMetadataBuilder,ArrayMetadataBuilder> arrayMetadataBuilderMapper)
Group	Group.createGroup(String key)
Group	Group.createGroup(String key, Attributes attributes)
Group	Group.createGroup(String key, GroupMetadata groupMetadata)
static GroupMetadata	GroupMetadata.defaultValue()
Node	Group.get(String key)
static Array	Array.open(StoreHandle storeHandle)	Opens an existing Zarr array at a specified storage location.
static Array	Array.open(String path)	Opens an existing Zarr array at a specified storage location using a String path.
static Array	Array.open(Path path)	Opens an existing Zarr array at a specified storage location using a Path.
static Node	Node.open(StoreHandle storeHandle)	Opens an existing Zarr array or group at a specified storage location.
static Node	Node.open(String path)
static Node	Node.open(Path path)
Array	Array.resize(long[] newShape)	Sets a new shape for the Zarr array.
Array	Array.setAttributes(Attributes newAttributes)	Sets the attributes of the Zarr array.
Group	Group.setAttributes(Attributes newAttributes)
Array	Array.updateAttributes(Function<Attributes,Attributes> attributeMapper)	Updates the attributes of the Zarr array.
Group	Group.updateAttributes(Function<Attributes,Attributes> attributeMapper)

Constructors in dev.zarr.zarrjava.v3 that throw ZarrException

Modifier	Constructor	Description
protected	Array(StoreHandle storeHandle, ArrayMetadata arrayMetadata)
	ArrayMetadata(int zarrFormat, String nodeType, long[] shape, DataType dataType, ChunkGrid chunkGrid, ChunkKeyEncoding chunkKeyEncoding, Object fillValue, Codec[] codecs, String[] dimensionNames, Attributes attributes, Map<String,Object>[] storageTransformers)
	ArrayMetadata(long[] shape, DataType dataType, ChunkGrid chunkGrid, ChunkKeyEncoding chunkKeyEncoding, Object fillValue, Codec[] codecs, String[] dimensionNames, Attributes attributes, Map<String,Object>[] storageTransformers)
	GroupMetadata(int zarrFormat, String nodeType, Attributes attributes)
	GroupMetadata(Attributes attributes)

Uses of ZarrException in dev.zarr.zarrjava.v3.codec

Methods in dev.zarr.zarrjava.v3.codec that throw ZarrException

Modifier and Type	Method	Description
long	Codec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)

Uses of ZarrException in dev.zarr.zarrjava.v3.codec.core

Methods in dev.zarr.zarrjava.v3.codec.core that throw ZarrException

Modifier and Type	Method	Description
long	BloscCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	BytesCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	Crc32cCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	GzipCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	ShardingIndexedCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	TransposeCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
long	ZstdCodec.computeEncodedSize(long inputByteLength, ArrayMetadata.CoreArrayMetadata arrayMetadata)
ByteBuffer	Crc32cCodec.decode(ByteBuffer chunkBytes)
ByteBuffer	GzipCodec.decode(ByteBuffer chunkBytes)
ucar.ma2.Array	ShardingIndexedCodec.decode(ByteBuffer shardBytes)
ucar.ma2.Array	TransposeCodec.decode(ucar.ma2.Array chunkArray)
ByteBuffer	ZstdCodec.decode(ByteBuffer compressedBytes)
ucar.ma2.Array	ShardingIndexedCodec.decodePartial(StoreHandle chunkHandle, long[] offset, int[] shape)
ByteBuffer	BloscCodec.encode(ByteBuffer chunkBytes)
ByteBuffer	GzipCodec.encode(ByteBuffer chunkBytes)
ByteBuffer	ShardingIndexedCodec.encode(ucar.ma2.Array shardArray)
ucar.ma2.Array	TransposeCodec.encode(ucar.ma2.Array chunkArray)
ByteBuffer	ZstdCodec.encode(ByteBuffer chunkBytes)
protected ByteOrder	BytesCodec.getByteOrder()
ArrayMetadata.CoreArrayMetadata	TransposeCodec.resolveArrayMetadata()
void	ShardingIndexedCodec.setCoreArrayMetadata(ArrayMetadata.CoreArrayMetadata arrayMetadata)

Constructors in dev.zarr.zarrjava.v3.codec.core that throw ZarrException

Modifier	Constructor	Description
	Configuration(com.scalableminds.bloscjava.Blosc.Compressor cname, com.scalableminds.bloscjava.Blosc.Shuffle shuffle, int clevel, int typesize, int blocksize)
	Configuration(int level)
	Configuration(int[] chunkShape, Codec[] codecs, Codec[] indexCodecs, String indexLocation)
	Configuration(int level, boolean checksum)
	ShardingIndexedCodec(ShardingIndexedCodec.Configuration configuration)