Skip to content

Changes

Summary

  1. Bump bioformats from `686371d` to `800950a` (details)
  2. merge master -Dorg -Ssuccess-only (details)
  3. Update component versions (details)
Commit 5fa47f3bdbdecd91f689d19bd10240e55f474da6 by noreply
Bump bioformats from `686371d` to `800950a`

Bumps [bioformats](https://github.com/openmicroscopy/bioformats) from `686371d` to `800950a`.
- [Release notes](https://github.com/openmicroscopy/bioformats/releases)
- [Commits](https://github.com/openmicroscopy/bioformats/compare/686371de502d5ae2bfae059c1f37e9c224a3b501...800950a250ac0425118dc29bd14553c0c7297692)

---
updated-dependencies:
- dependency-name: bioformats
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <support@github.com>
The file was modified bioformats (diff)
Commit 2013a3d3405ccc22aec27c7bf5661955ed32b4f7 by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Excluded PRs:
  - PR 632 dependabot[bot] 'Bump ZarrReader from `9a9e662` to `b17c3ab`' (status: failure)
Already up to date.

Merged PRs:
  - PR 644 dependabot[bot] 'Bump bioformats from `686371d` to `800950a`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 95 dgault 'Class cast exception when parsing metadata' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Updating 9a9e662..b17c3ab
Previously merged:
  - PR 93 dgault 'Bump version to 0.5.3-SNAPSHOT'
  - PR 92 dgault 'Bump version to 0.5.2'
  - PR 91 dgault 'Bump Bio-Formats version to 7.3.1'

Repository: ome/bio-formats-documentation
Already up to date.

Merged PRs:
  - PR 390 melissalinkert 'Update precompressed tile documentation'
  - PR 393 jburel 'Use https instead of http'

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4217 marcobitplane 'Imaris IMS Reader: support for LZ4 compression and performance improvements' (user: marcobitplane)
  - PR 4196 melissalinkert 'DICOM: use FrameTimePointer to detect timelapse data' (label: exclude)
  - PR 4172 sbesson 'testSaneUsedFiles: check getCurrentFile is the first file in the getUsedFiles list' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
Already up to date.

Merged PRs:
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4195 WalkerKnapp 'Andor SIF: Support files larger than 4 GB and with non-fixed-size footers'
  - PR 4219 melissalinkert 'ImageJ exporter: save original metadata'

Repository: ome/ome-codecs
Already up to date.

Merged PRs:
  - PR 37 melissalinkert 'JPEG: warn if quality is outside [0.25, 1.0]'
  - PR 41 rharkes 'Add LZ4 compression/decompression'

Repository: ome/ome-common-java
Already up to date.

Merged PRs:
  - PR 91 sbesson 'Activate Javadoc in CI builds'

Repository: ome/ome-jai
Already up to date.

Repository: ome/ome-mdbtools
Already up to date.

Repository: ome/ome-metakit
Already up to date.

Repository: ome/ome-model
Already up to date.

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Repository: ome/ome-stubs
Already up to date.

Generated by BIOFORMATS-push#202 (https://merge-ci.openmicroscopy.org/jenkins/job/BIOFORMATS-push/202/)
The file was modified ZarrReader (diff)
The file was modified ome-mdbtools (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-codecs (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-jai (diff)
The file was modified .gitmodules (diff)
The file was modified ome-model (diff)
The file was modified ome-poi (diff)
The file was modified bioformats (diff)
The file was modified ome-common-java (diff)
The file was modified ome-stubs (diff)
The file was modified ome-metakit (diff)
Commit efacf9e48140b6927422670887ea59aa8941fc9e by snoopycrimecop
Update component versions
The file was modified ome-poi (diff)
The file was modified ome-codecs (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-examples (diff)
The file was modified bio-formats-documentation (diff)
The file was modified bioformats (diff)
The file was modified ome-metakit (diff)