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Summary

  1. merge master -Dorg -Ssuccess-only (details)
  2. Update component versions (details)
Commit 78b050660599a21d033d2fefcabd8ded007694ec by snoopycrimecop
merge master -Dorg -Ssuccess-only

Repository: ome/bio-formats-build
Already up to date.

Merged PRs:
  - PR 567 dependabot[bot] 'Bump ZarrReader from `4deea8d` to `cf4f3f2`'
  - PR 570 dependabot[bot] 'Bump ome-common-java from `fa81e2b` to `eca9c1c`'
  - PR 571 dependabot[bot] 'Bump bioformats from `6815841` to `83df5ca`'
  - PR 572 dependabot[bot] 'Bump ome-poi from `ba0d5d2` to `1fcfd18`'
  - PR 573 dependabot[bot] 'Bump ome-codecs from `040c8b9` to `e092dea`'

Repository: ome/ZarrReader
Excluded PRs:
  - PR 82 dgault 'Reintroduce S3FileSystemStore' (exclude comment)
  - PR 73 dgault 'Update ReadMe and Change Log' (status: failure)
  - PR 20 dgault 'ZarrReader: Use chunk API' (exclude comment)
Already up to date.

Merged PRs:
  - PR 71 sbesson 'Bump Bio-Formats to version 7.1.0'
  - PR 74 dgault 'JZarr: Add jackson.core and jackson-databind to exclsions'
  - PR 75 dgault 'Update handling and parsing of acquisition metadata'
  - PR 80 jburel 'Review action'
  - PR 81 jburel 'add Java 17 to testing matrix'

Repository: ome/bio-formats-documentation
Already up to date.

Repository: ome/bio-formats-examples
Already up to date.

Merged PRs:
  - PR 69 dgault 'Add macro examples from OME 2020 NGFF workshop'

Repository: openmicroscopy/bioformats
Excluded PRs:
  - PR 4167 melissalinkert 'DICOM: treat ultrasound ECG data as timelapse' (stage: draft)
  - PR 4164 melissalinkert 'Reduce DICOM write time' (stage: draft)
  - PR 4131 dgault 'VirtualImagePlus: Retain B&C settings for each slice' (status: failure)
  - PR 4092 NicoKiaru 'Commits an alternative Zeiss CZI Reader' (user: NicoKiaru)
  - PR 4000 XLEFReaderForBioformats 'Reworking LMSMetadata package and adding a new lif reader' (user: XLEFReaderForBioformats)
  - PR 3898 melissalinkert 'InCell 1000/2000 field count and plane metadata fixes' (stage: draft)
  - PR 3794 dgault 'Chunk API: Add new API and functionality for reading and writing chunks' (label: exclude)
  - PR 3680 iwbh15 'Performance increase in writeIFD' (user: iwbh15)
  - PR 3618 dgault 'Memoizer: Persist caching to sub readers' (label: breaking)
  - PR 3537 dgault 'Flex: Merge IDR changes and add new group plate option' (label: exclude)
Already up to date.

Merged PRs:
  - PR 4117 ed-scanlon 'Work-around for breaking change in CellSens 4.1'
  - PR 4130 carandraug 'matlab/bfGetPlane.m: avoid use of makeDataArray2D when Octave (ome/bio-formats-octave-docker#29)'
  - PR 4147 TBlackmore 'Added support for ColumbusReader to import data with z stacks'
  - PR 4154 melissalinkert 'Update GitHub actions versions and add M1/Java 21 build'
  - PR 4159 melissalinkert 'Turn off file-leak-detector if tests are run with Java 21'
  - PR 4162 melissalinkert 'Remove duplicate enum check and add clarifying comment'
  - PR 4163 melissalinkert 'SimplePCI: fix Z position handling'

Repository: ome/ome-codecs
Excluded PRs:
  - PR 24 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (status: failure)
  - PR 21 dgault 'Replace one-jai with jai-imageio-jpeg2000' (stage: draft)
Already up to date.

Merged PRs:
  - PR 36 sbesson 'Use Maven profiles to handle different versions of TestNG'

Repository: ome/ome-common-java
Excluded PRs:
  - PR 72 dependabot[bot] 'Bump testng from 6.8 to 7.7.0' (label: exclude)
  - PR 59 NicoKiaru 'adds AverageImageScaler implementation of IImageScaler' (user: NicoKiaru)
Already up to date.

Merged PRs:
  - PR 88 sbesson 'Use Maven profiles to handle different versions of TestNG'

Repository: ome/ome-jai
Already up to date.

Merged PRs:
  - PR 7 melissalinkert 'Add JDK21 to build matrix'

Repository: ome/ome-mdbtools
Already up to date.

Merged PRs:
  - PR 13 melissalinkert 'Add JDK 21 to build matrix'

Repository: ome/ome-metakit
Updating 8ead2f6..21bd756
Previously merged:
  - PR 20 melissalinkert 'Add JDK 21 to build matrix'

Merged PRs:
  - PR 21 sbesson 'Use Maven profiles to handle different versions of TestNG'

Repository: ome/ome-model
Excluded PRs:
  - PR 180 joshmoore 'xsd-fu: templates for linkml generation' (stage: draft)
Already up to date.

Merged PRs:
  - PR 185 melissalinkert 'Add model object API to clear each list of associated objects'
  - PR 187 melissalinkert 'Add JDK 21 to build matrix'
  - PR 188 sbesson 'Use Maven profiles to handle different versions of TestNG'

Conflicting PRs (not included):
  - PR 174 jburel 'Remove docs'

Repository: ome/ome-poi
Already up to date.

Merged PRs:
  - PR 15 sbesson 'Add JDK 21 to the build matrix'

Repository: ome/ome-stubs
Already up to date.

Merged PRs:
  - PR 11 melissalinkert 'Add JDK 21 to build matrix'

Generated by BIOFORMATS-push#3 (https://BRANCHCI.openmicroscopy.org/jenkins/job/BIOFORMATS-push/3/)
The file was modified .gitmodules (diff)
The file was modified ZarrReader (diff)
The file was modified ome-codecs (diff)
The file was modified ome-stubs (diff)
The file was modified ome-model (diff)
The file was modified ome-common-java (diff)
The file was modified ome-jai (diff)
The file was modified bioformats (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-metakit (diff)
The file was modified ome-poi (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-mdbtools (diff)
Commit 8760d56e90f958c350a697e7507c8f5235b78ca2 by snoopycrimecop
Update component versions
The file was modified bioformats (diff)
The file was modified bio-formats-examples (diff)
The file was modified ome-codecs (diff)
The file was modified ome-metakit (diff)
The file was modified ome-model (diff)
The file was modified bio-formats-documentation (diff)
The file was modified ome-poi (diff)