Console Output
+ export BASE_REPO=omero-guides.git
+ BASE_REPO=omero-guides.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-guides-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-guides-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-guides-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ '[' -n /bin/bash -o -n '' ']'
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2024-11-01 00:58:53,340 [ scc.config] DEBUG Found github.token
2024-11-01 00:58:53,343 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-11-01 00:58:53,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:58:53,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:58:54,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-11-01 00:58:54,265 [ scc.gh] DEBUG 3938 remaining from 5000 (Reset at 01:11
2024-11-01 00:58:54,266 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:58:54,270 [ scc.git] DEBUG Check current status
2024-11-01 00:58:54,270 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:58:54,274 [ scc.git] DEBUG 9133f01 Merge pull request #294 from joshmoore/license
2024-11-01 00:58:54,274 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:58:54,316 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-11-01 00:58:54,325 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-11-01 00:58:54,327 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-11-01 00:58:54,330 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-11-01 00:58:54,339 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-11-01 00:58:54,342 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-11-01 00:58:54,353 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-11-01 00:58:54,367 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-11-01 00:58:54,370 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-11-01 00:58:54,372 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-11-01 00:58:54,381 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-11-01 00:58:54,390 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-11-01 00:58:54,399 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-11-01 00:58:54,402 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3)
2024-11-01 00:58:54,411 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-11-01 00:58:54,414 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-11-01 00:58:54,423 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-11-01 00:58:54,432 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-11-01 00:58:54,434 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-11-01 00:58:54,439 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:58:54,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2024-11-01 00:58:55,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:58:55,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:58:55,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:58:56,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:58:56,383 [ scc.git] DEBUG Resetting...
2024-11-01 00:58:56,383 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-11-01 00:58:56,393 [ scc.git] DEBUG HEAD is now at 9133f01 Merge pull request #294 from joshmoore/license
2024-11-01 00:58:56,393 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-11-01 00:58:56,484 [ scc.git] DEBUG Check current status
2024-11-01 00:58:56,485 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:58:56,489 [ scc.git] DEBUG 9133f01 Merge pull request #294 from joshmoore/license
2024-11-01 00:58:56,489 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:58:56,530 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-11-01 00:58:56,540 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-11-01 00:58:56,543 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-11-01 00:58:56,546 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-11-01 00:58:56,554 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-11-01 00:58:56,557 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-11-01 00:58:56,565 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-11-01 00:58:56,574 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-11-01 00:58:56,577 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-11-01 00:58:56,580 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-11-01 00:58:56,589 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-11-01 00:58:56,597 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-11-01 00:58:56,606 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-11-01 00:58:56,609 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3)
2024-11-01 00:58:56,618 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-11-01 00:58:56,621 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-11-01 00:58:56,630 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-11-01 00:58:56,641 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-11-01 00:58:56,644 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-11-01 00:58:56,645 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-11-01 00:58:56,645 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-11-01 00:58:56,645 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-11-01 00:58:56,645 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-11-01 00:58:56,645 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-11-01 00:58:56,646 [ scc.repo] DEBUG ## PRs found:
2024-11-01 00:58:56,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2024-11-01 00:58:56,901 [ scc.repo] DEBUG ## Branches found:
2024-11-01 00:58:56,901 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:58:56,901 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:58:56,905 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 00:58:56,910 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 00:58:56,910 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 00:58:56,914 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 00:58:56,919 [ scc.git] DEBUG Already up to date.
2024-11-01 00:58:56,919 [ scc.git] DEBUG ## Unique users: []
2024-11-01 00:58:56,919 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:58:56,919 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:58:56,923 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 00:58:56,975 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:58:56,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:58:56,980 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 00:58:58,209 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f7a2a7478b0> has no local changes
2024-11-01 00:58:58,209 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 00:58:58,270 [ scc.git] DEBUG [detached HEAD b13f68e] merge master -Dorg -Snone
2024-11-01 00:58:58,270 [ scc.merge] INFO Repository: ome/omero-guides
2024-11-01 00:58:58,271 [ scc.merge] INFO Excluded PRs:
2024-11-01 00:58:58,271 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2024-11-01 00:58:58,271 [ scc.merge] INFO Already up to date.
2024-11-01 00:58:58,271 [ scc.merge] INFO
2024-11-01 00:58:58,271 [ scc.merge] INFO
2024-11-01 00:58:58,271 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-11-01 00:58:58,271 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'cellprofiler'
Synchronizing submodule url for 'download'
Synchronizing submodule url for 'figure'
Synchronizing submodule url for 'fiji'
Synchronizing submodule url for 'fpbioimage'
Synchronizing submodule url for 'ilastik'
Synchronizing submodule url for 'introduction'
Synchronizing submodule url for 'iviewer'
Synchronizing submodule url for 'java'
Synchronizing submodule url for 'matlab'
Synchronizing submodule url for 'mde'
Synchronizing submodule url for 'orbit'
Synchronizing submodule url for 'parade'
Synchronizing submodule url for 'python'
Synchronizing submodule url for 'qupath'
Synchronizing submodule url for 'r'
Synchronizing submodule url for 'scripts'
Synchronizing submodule url for 'trackmate'
Synchronizing submodule url for 'upload'
Submodule path 'download': checked out 'a27d196bee4a96b586246dc5d94ef07db7c5c0f8'
Submodule path 'parade': checked out '908b3356722bb23aafe103d87f8675f80fbaa5ed'
Submodule path 'scripts': checked out 'bb21e02683ea51ea8fd0e2e86b605f694767c36b'
Merge all submodules2024-11-01 00:59:04,980 [ scc.config] DEBUG Found github.token
2024-11-01 00:59:04,983 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2024-11-01 00:59:05,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:59:05,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:59:05,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2024-11-01 00:59:05,914 [ scc.gh] DEBUG 3904 remaining from 5000 (Reset at 01:11
2024-11-01 00:59:05,914 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:05,918 [ scc.git] DEBUG Check current status
2024-11-01 00:59:05,919 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:05,922 [ scc.git] DEBUG b13f68e merge master -Dorg -Snone
2024-11-01 00:59:05,922 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:05,965 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-11-01 00:59:05,974 [ scc.git] DEBUG +a27d196bee4a96b586246dc5d94ef07db7c5c0f8 download (heads/master)
2024-11-01 00:59:05,977 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-11-01 00:59:05,980 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-11-01 00:59:05,988 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-11-01 00:59:05,991 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-11-01 00:59:06,000 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-11-01 00:59:06,008 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-11-01 00:59:06,011 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-11-01 00:59:06,014 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-11-01 00:59:06,022 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-11-01 00:59:06,031 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-11-01 00:59:06,040 [ scc.git] DEBUG +908b3356722bb23aafe103d87f8675f80fbaa5ed parade (heads/master)
2024-11-01 00:59:06,043 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3)
2024-11-01 00:59:06,051 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-11-01 00:59:06,054 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-11-01 00:59:06,063 [ scc.git] DEBUG +bb21e02683ea51ea8fd0e2e86b605f694767c36b scripts (heads/master)
2024-11-01 00:59:06,071 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-11-01 00:59:06,074 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-11-01 00:59:06,079 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:06,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides HTTP/1.1" 200 None
2024-11-01 00:59:06,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:07,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:07,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:08,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:08,018 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:08,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-11-01 00:59:08,085 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:08,089 [ scc.git] DEBUG Check current status
2024-11-01 00:59:08,089 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:08,093 [ scc.git] DEBUG 248e8cb Merge pull request #23 from jburel/rtd_build
2024-11-01 00:59:08,093 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:08,132 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:08,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler HTTP/1.1" 200 None
2024-11-01 00:59:08,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:09,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:09,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:10,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:10,155 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:10,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:10,197 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-11-01 00:59:10,198 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:10,201 [ scc.git] DEBUG Check current status
2024-11-01 00:59:10,202 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:10,205 [ scc.git] DEBUG a27d196 Fix build failure on rtd
2024-11-01 00:59:10,205 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:10,248 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:10,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download HTTP/1.1" 200 None
2024-11-01 00:59:11,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:11,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:11,902 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:12,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:12,305 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:12,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:12,350 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-11-01 00:59:12,350 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:12,355 [ scc.git] DEBUG Check current status
2024-11-01 00:59:12,355 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:12,359 [ scc.git] DEBUG 654d43b Merge pull request #16 from jburel/rtd_build
2024-11-01 00:59:12,360 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:12,402 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:12,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure HTTP/1.1" 200 None
2024-11-01 00:59:13,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:13,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:14,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:14,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:14,449 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:14,488 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:14,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-11-01 00:59:14,489 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:14,495 [ scc.git] DEBUG Check current status
2024-11-01 00:59:14,495 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:14,499 [ scc.git] DEBUG 218b05a Merge pull request #32 from jburel/link
2024-11-01 00:59:14,499 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:14,541 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:14,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji HTTP/1.1" 200 None
2024-11-01 00:59:15,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:15,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:16,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:16,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:16,672 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:16,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:16,710 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-11-01 00:59:16,710 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:16,714 [ scc.git] DEBUG Check current status
2024-11-01 00:59:16,714 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:16,718 [ scc.git] DEBUG 8f4b103 remove sphinx job following migration to rtd
2024-11-01 00:59:16,718 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:16,759 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:17,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage HTTP/1.1" 200 None
2024-11-01 00:59:17,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:18,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:18,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:18,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:18,808 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:18,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:18,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-11-01 00:59:18,851 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:18,856 [ scc.git] DEBUG Check current status
2024-11-01 00:59:18,856 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:18,859 [ scc.git] DEBUG 6789cf7 Remove sphinx badge
2024-11-01 00:59:18,859 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:18,902 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:19,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik HTTP/1.1" 200 None
2024-11-01 00:59:19,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:20,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:20,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:20,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:20,965 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:21,007 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:21,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-11-01 00:59:21,008 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:21,012 [ scc.git] DEBUG Check current status
2024-11-01 00:59:21,013 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:21,016 [ scc.git] DEBUG d903363 Merge pull request #26 from jburel/rtd_build
2024-11-01 00:59:21,016 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:21,061 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:21,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction HTTP/1.1" 200 None
2024-11-01 00:59:21,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:22,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:22,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:23,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:23,098 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:23,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:23,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-11-01 00:59:23,142 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:23,147 [ scc.git] DEBUG Check current status
2024-11-01 00:59:23,147 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:23,152 [ scc.git] DEBUG 6ed80b3 Merge pull request #13 from jburel/rtd_build
2024-11-01 00:59:23,152 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:23,191 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:23,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer HTTP/1.1" 200 None
2024-11-01 00:59:24,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:24,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:24,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:25,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:25,231 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:25,268 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:25,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-11-01 00:59:25,269 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:25,273 [ scc.git] DEBUG Check current status
2024-11-01 00:59:25,273 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:25,276 [ scc.git] DEBUG a4b6b55 Remove badge for sphinx
2024-11-01 00:59:25,276 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:25,315 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:25,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java HTTP/1.1" 200 None
2024-11-01 00:59:26,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:26,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:27,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:27,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:27,480 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:27,517 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:27,518 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-11-01 00:59:27,518 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:27,522 [ scc.git] DEBUG Check current status
2024-11-01 00:59:27,522 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:27,526 [ scc.git] DEBUG ecbd07c Merge pull request #5 from pwalczysko/matlab-online
2024-11-01 00:59:27,526 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:27,566 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:27,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab HTTP/1.1" 200 None
2024-11-01 00:59:28,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:28,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:29,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:29,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:29,724 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:29,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:29,762 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-11-01 00:59:29,762 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:29,766 [ scc.git] DEBUG Check current status
2024-11-01 00:59:29,767 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:29,770 [ scc.git] DEBUG d43e17f Merge pull request #5 from jburel/rtd_build
2024-11-01 00:59:29,771 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:29,810 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:30,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde HTTP/1.1" 200 None
2024-11-01 00:59:30,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:31,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:31,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:31,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:31,817 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:31,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:31,855 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-11-01 00:59:31,855 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:31,859 [ scc.git] DEBUG Check current status
2024-11-01 00:59:31,859 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:31,862 [ scc.git] DEBUG 4ef1eaa Update actions to v3 and v4
2024-11-01 00:59:31,863 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:31,902 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:32,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit HTTP/1.1" 200 None
2024-11-01 00:59:32,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:33,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:33,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:34,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:34,009 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:34,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:34,046 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-11-01 00:59:34,046 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:34,050 [ scc.git] DEBUG Check current status
2024-11-01 00:59:34,050 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:34,054 [ scc.git] DEBUG 908b335 Merge pull request #1 from ome/rtd_build
2024-11-01 00:59:34,054 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:34,092 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:34,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade HTTP/1.1" 200 None
2024-11-01 00:59:34,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:35,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:35,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:36,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:36,134 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:36,176 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:36,177 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-11-01 00:59:36,177 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:36,182 [ scc.git] DEBUG Check current status
2024-11-01 00:59:36,182 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:36,186 [ scc.git] DEBUG b633fb3 Merge pull request #61 from jburel/update
2024-11-01 00:59:36,186 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:36,229 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:36,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python HTTP/1.1" 200 None
2024-11-01 00:59:37,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:37,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:37,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:38,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:38,228 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:38,270 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:38,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-11-01 00:59:38,271 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:38,277 [ scc.git] DEBUG Check current status
2024-11-01 00:59:38,277 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:38,281 [ scc.git] DEBUG 6db8b1c Merge pull request #11 from jburel/installation
2024-11-01 00:59:38,281 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:38,324 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:38,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath HTTP/1.1" 200 None
2024-11-01 00:59:39,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:39,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:39,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:40,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:40,361 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:40,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:40,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-11-01 00:59:40,405 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:40,410 [ scc.git] DEBUG Check current status
2024-11-01 00:59:40,410 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:40,415 [ scc.git] DEBUG a770a10 Remove sphinx badge
2024-11-01 00:59:40,416 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:40,467 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:40,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r HTTP/1.1" 200 None
2024-11-01 00:59:41,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:41,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:42,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:42,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:42,503 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:42,546 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:42,547 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-11-01 00:59:42,547 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:42,552 [ scc.git] DEBUG Check current status
2024-11-01 00:59:42,553 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:42,557 [ scc.git] DEBUG bb21e02 Merge pull request #2 from jburel/rtd_build
2024-11-01 00:59:42,557 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:42,603 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:42,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts HTTP/1.1" 200 None
2024-11-01 00:59:43,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:43,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:44,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:44,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:44,632 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:44,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:44,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-11-01 00:59:44,675 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:44,680 [ scc.git] DEBUG Check current status
2024-11-01 00:59:44,681 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:44,686 [ scc.git] DEBUG ffe98a8 Merge pull request #5 from jburel/rtd_build
2024-11-01 00:59:44,686 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:44,734 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:45,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate HTTP/1.1" 200 None
2024-11-01 00:59:45,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:45,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:46,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:46,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:46,771 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:46,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:46,813 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-11-01 00:59:46,814 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2024-11-01 00:59:46,818 [ scc.git] DEBUG Check current status
2024-11-01 00:59:46,818 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:46,823 [ scc.git] DEBUG 72df341 Merge pull request #17 from jburel/rtd_build
2024-11-01 00:59:46,824 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:46,868 [ scc.config] DEBUG Found remote.origin.url
2024-11-01 00:59:47,341 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload HTTP/1.1" 200 None
2024-11-01 00:59:47,796 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2024-11-01 00:59:48,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2024-11-01 00:59:48,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2024-11-01 00:59:49,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2024-11-01 00:59:49,003 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:49,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:49,041 [ scc.git] DEBUG Resetting...
2024-11-01 00:59:49,041 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2024-11-01 00:59:49,051 [ scc.git] DEBUG HEAD is now at b13f68e merge master -Dorg -Snone
2024-11-01 00:59:49,052 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2024-11-01 00:59:49,100 [ scc.git] DEBUG Submodule path 'download': checked out '4b1b912438f7415faf2d1f618d596968121bcfe8'
2024-11-01 00:59:49,139 [ scc.git] DEBUG Submodule path 'parade': checked out '0875cf1cbb43411bfd5849763da8fe7d2bdafdc0'
2024-11-01 00:59:49,157 [ scc.git] DEBUG Submodule path 'scripts': checked out 'f5038ce4ec273382ea60b19e2432f171ed88375d'
2024-11-01 00:59:49,166 [ scc.git] DEBUG Check current status
2024-11-01 00:59:49,166 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2024-11-01 00:59:49,172 [ scc.git] DEBUG b13f68e merge master -Dorg -Snone
2024-11-01 00:59:49,172 [ scc.git] DEBUG Calling 'git submodule status'
2024-11-01 00:59:49,213 [ scc.git] DEBUG 248e8cbfb0372b3d3be2d82cfe9234dd2e25c140 cellprofiler (v0.4.0-32-g248e8cb)
2024-11-01 00:59:49,221 [ scc.git] DEBUG 4b1b912438f7415faf2d1f618d596968121bcfe8 download (4b1b912)
2024-11-01 00:59:49,224 [ scc.git] DEBUG 654d43b5ef64f56bd6a99c69a9c98cbb5c8f76a7 figure (v0.1.0-55-g654d43b)
2024-11-01 00:59:49,227 [ scc.git] DEBUG 218b05a197695f01d8fc3d2cc6d197981df701c9 fiji (v0.2.1-86-g218b05a)
2024-11-01 00:59:49,237 [ scc.git] DEBUG 8f4b1035592a83dacf55e5cb585fd6ebe775f7f4 fpbioimage (heads/master)
2024-11-01 00:59:49,239 [ scc.git] DEBUG 6789cf7d3c977dec17e81088a8438adcdbfbcb94 ilastik (v0.3.1-20-g6789cf7)
2024-11-01 00:59:49,248 [ scc.git] DEBUG d9033638b26778db35de1c77428190ac4cad1936 introduction (heads/master)
2024-11-01 00:59:49,257 [ scc.git] DEBUG 6ed80b33e8ddc97c930e3ea8ba00702f34e0a8ed iviewer (heads/master)
2024-11-01 00:59:49,260 [ scc.git] DEBUG a4b6b55205d0588c48baa8177aa7608fd40b3f85 java (v0.1.1-17-ga4b6b55)
2024-11-01 00:59:49,262 [ scc.git] DEBUG ecbd07c31df9b103937f4803aa35f104480365f2 matlab (v0.1.0-26-gecbd07c)
2024-11-01 00:59:49,271 [ scc.git] DEBUG d43e17feb8400f35a51d20e050b8a87bcdbcd1eb mde (heads/master)
2024-11-01 00:59:49,280 [ scc.git] DEBUG 4ef1eaaf315bbb8ae56e9ea780971735dc406f46 orbit (heads/master)
2024-11-01 00:59:49,288 [ scc.git] DEBUG 0875cf1cbb43411bfd5849763da8fe7d2bdafdc0 parade (0875cf1)
2024-11-01 00:59:49,292 [ scc.git] DEBUG b633fb39b1f0145f8897fcb4b6cbe22b083cdb43 python (v0.3.0-91-gb633fb3)
2024-11-01 00:59:49,299 [ scc.git] DEBUG 6db8b1ceb6e7a44eb6145b4976fb3e048b04ee4f qupath (heads/master)
2024-11-01 00:59:49,302 [ scc.git] DEBUG a770a1048469668b66f5bde686d5b6d84d021e6d r (v0.1.0-24-ga770a10)
2024-11-01 00:59:49,311 [ scc.git] DEBUG f5038ce4ec273382ea60b19e2432f171ed88375d scripts (f5038ce)
2024-11-01 00:59:49,319 [ scc.git] DEBUG ffe98a8835c0f1bf345cb9ec0cfd2ba4aa304bd1 trackmate (heads/master)
2024-11-01 00:59:49,322 [ scc.git] DEBUG 72df341b901a85cdfced443a5ad807c8cc610b34 upload (v0.1.0-92-g72df341)
2024-11-01 00:59:49,323 [ scc.merge] INFO Merging Pull Request(s) based on master
2024-11-01 00:59:49,323 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2024-11-01 00:59:49,323 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2024-11-01 00:59:49,323 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2024-11-01 00:59:49,323 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2024-11-01 00:59:49,323 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2024-11-01 00:59:49,323 [ scc.repo] DEBUG ## PRs found:
2024-11-01 00:59:49,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guides/pulls HTTP/1.1" 200 None
2024-11-01 00:59:49,548 [ scc.repo] DEBUG ## Branches found:
2024-11-01 00:59:49,548 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:49,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:49,554 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 00:59:49,560 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 00:59:49,561 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 00:59:49,567 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 00:59:49,573 [ scc.git] DEBUG Already up to date.
2024-11-01 00:59:49,573 [ scc.git] DEBUG ## Unique users: []
2024-11-01 00:59:49,573 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:49,573 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:49,578 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 00:59:49,632 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:49,632 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:49,637 [ scc.repo] DEBUG ## PRs found:
2024-11-01 00:59:50,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/pulls HTTP/1.1" 200 None
2024-11-01 00:59:50,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24 HTTP/1.1" 200 None
2024-11-01 00:59:51,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/issues/24/comments HTTP/1.1" 200 None
2024-11-01 00:59:51,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-11-01 00:59:51,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 00:59:52,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-01 00:59:52,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-11-01 00:59:53,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/statuses/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25?per_page=1 HTTP/1.1" 200 None
2024-11-01 00:59:53,785 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25 HTTP/1.1" 200 None
2024-11-01 00:59:54,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-cellprofiler/commits/647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25/status HTTP/1.1" 200 None
2024-11-01 00:59:54,196 [ scc.repo] DEBUG - PR 24 jburel 'Remove binder'
2024-11-01 00:59:54,196 [ scc.repo] DEBUG ## Branches found:
2024-11-01 00:59:54,196 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-11-01 00:59:54,197 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:54,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:54,202 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 00:59:54,206 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 00:59:54,206 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 00:59:54,212 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 00:59:54,217 [ scc.git] DEBUG Already up to date.
2024-11-01 00:59:54,217 [ scc.git] DEBUG Calling 'git fetch origin pull/24/head'
2024-11-01 00:59:55,078 [ scc.git] DEBUG From https://github.com/ome/omero-guide-cellprofiler
2024-11-01 00:59:55,079 [ scc.git] DEBUG * branch refs/pull/24/head -> FETCH_HEAD
2024-11-01 00:59:55,086 [ scc.git] DEBUG ## Unique users: []
2024-11-01 00:59:55,086 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:55,086 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,095 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2024-11-01 00:59:55,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,112 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 24 (Remove binder) 647d3d34fa15bd7aa6a1437fc63c92be3cbc8b25'
2024-11-01 00:59:55,124 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 00:59:55,126 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -------------------------
2024-11-01 00:59:55,126 [ scc.git] DEBUG .github/workflows/build.yml | 27 +++++++++++++++++++++++++++
2024-11-01 00:59:55,126 [ scc.git] DEBUG README.md | 15 ++++++---------
2024-11-01 00:59:55,126 [ scc.git] DEBUG binder/environment.yml | 6 ++++--
2024-11-01 00:59:55,126 [ scc.git] DEBUG 4 files changed, 37 insertions(+), 36 deletions(-)
2024-11-01 00:59:55,126 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2024-11-01 00:59:55,126 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml
2024-11-01 00:59:55,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:59:55,258 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 00:59:55,301 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:55,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,308 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:55,346 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 00:59:55,353 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e45ef70> has no local changes
2024-11-01 00:59:55,353 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 00:59:55,363 [ scc.git] DEBUG [detached HEAD ef54c3a] merge master -Dorg -Ssuccess-only
2024-11-01 00:59:55,363 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:55,363 [ scc.repo] DEBUG ## PRs found:
2024-11-01 00:59:55,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-download/pulls HTTP/1.1" 200 2
2024-11-01 00:59:55,669 [ scc.repo] DEBUG ## Branches found:
2024-11-01 00:59:55,669 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-11-01 00:59:55,669 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:55,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,674 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 00:59:55,679 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 00:59:55,679 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 00:59:55,685 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 00:59:55,695 [ scc.git] DEBUG Updating 4b1b912..a27d196
2024-11-01 00:59:55,696 [ scc.git] DEBUG ## Unique users: []
2024-11-01 00:59:55,696 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:55,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,701 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 00:59:55,740 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:55,740 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:55,746 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:55,787 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 00:59:55,794 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e45ef40> has no local changes
2024-11-01 00:59:55,795 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 00:59:55,804 [ scc.git] DEBUG [detached HEAD 58c0a1b] merge master -Dorg -Ssuccess-only
2024-11-01 00:59:55,804 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:55,805 [ scc.repo] DEBUG ## PRs found:
2024-11-01 00:59:56,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/pulls HTTP/1.1" 200 None
2024-11-01 00:59:56,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14 HTTP/1.1" 200 None
2024-11-01 00:59:57,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/issues/14/comments HTTP/1.1" 200 None
2024-11-01 00:59:57,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2024-11-01 00:59:58,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 00:59:58,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/commits/c2e5919f88d844ffea560784b7a800c655ff0743 HTTP/1.1" 200 None
2024-11-01 00:59:59,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-figure/statuses/c2e5919f88d844ffea560784b7a800c655ff0743?per_page=1 HTTP/1.1" 200 2
2024-11-01 00:59:59,015 [ scc.repo] DEBUG - PR 14 will-moore 'Table data by roi'
2024-11-01 00:59:59,015 [ scc.repo] DEBUG ## Branches found:
2024-11-01 00:59:59,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-11-01 00:59:59,015 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:59,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:59,021 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 00:59:59,026 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 00:59:59,026 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 00:59:59,032 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 00:59:59,038 [ scc.git] DEBUG Already up to date.
2024-11-01 00:59:59,039 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2024-11-01 00:59:59,530 [ scc.git] DEBUG From https://github.com/ome/omero-guide-figure
2024-11-01 00:59:59,531 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2024-11-01 00:59:59,535 [ scc.git] DEBUG ## Unique users: []
2024-11-01 00:59:59,536 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:59,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:59,541 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c2e5919f88d844ffea560784b7a800c655ff0743'
2024-11-01 00:59:59,548 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:59,553 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Table data by roi) c2e5919f88d844ffea560784b7a800c655ff0743'
2024-11-01 00:59:59,563 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 00:59:59,566 [ scc.git] DEBUG docs/omero_figure_scripting.rst | 20 ++++++++++----------
2024-11-01 00:59:59,566 [ scc.git] DEBUG scripts/figure_table_data_shapes.js | 12 ++++++++----
2024-11-01 00:59:59,566 [ scc.git] DEBUG 2 files changed, 18 insertions(+), 14 deletions(-)
2024-11-01 00:59:59,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 00:59:59,696 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 00:59:59,737 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 00:59:59,737 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 00:59:59,742 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 00:59:59,780 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 00:59:59,786 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e47cd90> has no local changes
2024-11-01 00:59:59,786 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 00:59:59,912 [ scc.git] DEBUG [detached HEAD 16dcbc7] merge master -Dorg -Ssuccess-only
2024-11-01 00:59:59,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 00:59:59,913 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:00,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/pulls HTTP/1.1" 200 None
2024-11-01 01:00:00,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24 HTTP/1.1" 200 None
2024-11-01 01:00:01,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fiji/issues/24/comments HTTP/1.1" 200 None
2024-11-01 01:00:01,081 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:01,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-11-01 01:00:01,082 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,088 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:01,093 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:01,093 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:01,098 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:01,103 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:01,103 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:01,103 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,103 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,108 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:01,149 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,150 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,156 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:01,198 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:01,204 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e4405b0> has no local changes
2024-11-01 01:00:01,205 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:01,213 [ scc.git] DEBUG [detached HEAD 5584b23] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:01,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:01,213 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:01,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-fpbioimage/pulls HTTP/1.1" 200 2
2024-11-01 01:00:01,511 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:01,512 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-11-01 01:00:01,512 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,512 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,518 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:01,523 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:01,523 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:01,529 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:01,533 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:01,534 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:01,534 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,538 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:01,576 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:01,577 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:01,581 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:01,619 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:01,625 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e456b80> has no local changes
2024-11-01 01:00:01,625 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-fpbioimage
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:01,633 [ scc.git] DEBUG [detached HEAD 2d7f24d] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:01,633 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:01,633 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:02,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/pulls HTTP/1.1" 200 None
2024-11-01 01:00:02,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/issues/36 HTTP/1.1" 200 None
2024-11-01 01:00:03,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/issues/36/comments HTTP/1.1" 200 None
2024-11-01 01:00:03,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da HTTP/1.1" 200 None
2024-11-01 01:00:03,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 01:00:04,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da/check-suites?app_id=15368 HTTP/1.1" 200 None
2024-11-01 01:00:04,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da HTTP/1.1" 200 None
2024-11-01 01:00:05,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/statuses/833738fa274bb569a674cc09fe914370aabba6da?per_page=1 HTTP/1.1" 200 None
2024-11-01 01:00:05,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da HTTP/1.1" 200 None
2024-11-01 01:00:06,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-ilastik/commits/833738fa274bb569a674cc09fe914370aabba6da/status HTTP/1.1" 200 None
2024-11-01 01:00:06,127 [ scc.repo] DEBUG - PR 36 jburel 'Build issue'
2024-11-01 01:00:06,127 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:06,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-11-01 01:00:06,127 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:06,127 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:06,134 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:06,139 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:06,139 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:06,145 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:06,151 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:06,151 [ scc.git] DEBUG Calling 'git fetch origin pull/36/head'
2024-11-01 01:00:07,974 [ scc.git] DEBUG From https://github.com/ome/omero-guide-ilastik
2024-11-01 01:00:07,975 [ scc.git] DEBUG * branch refs/pull/36/head -> FETCH_HEAD
2024-11-01 01:00:07,977 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:07,977 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:07,977 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:07,982 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...833738fa274bb569a674cc09fe914370aabba6da'
2024-11-01 01:00:07,987 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:07,992 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 36 (Build issue) 833738fa274bb569a674cc09fe914370aabba6da'
2024-11-01 01:00:08,006 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 01:00:08,015 [ scc.git] DEBUG .github/workflows/binder_badge.yml | 25 -
2024-11-01 01:00:08,016 [ scc.git] DEBUG .github/workflows/build.yml | 27 +
2024-11-01 01:00:08,016 [ scc.git] DEBUG .github/workflows/repo2docker.yml | 23 -
2024-11-01 01:00:08,016 [ scc.git] DEBUG .gitignore | 1 +
2024-11-01 01:00:08,016 [ scc.git] DEBUG .readthedocs.yaml | 8 +-
2024-11-01 01:00:08,016 [ scc.git] DEBUG README.md | 61 +-
2024-11-01 01:00:08,016 [ scc.git] DEBUG binder/environment.yml | 20 +-
2024-11-01 01:00:08,016 [ scc.git] DEBUG notebooks/idr0062_pixel_classification_zarr.ipynb | 255 ++++-----
2024-11-01 01:00:08,016 [ scc.git] DEBUG notebooks/pipelines/ilastik14-Nov-2024.ilp | Bin 0 -> 476542 bytes
2024-11-01 01:00:08,016 [ scc.git] DEBUG notebooks/pixel_classification.ipynb | 485 ++++++++++++++--
2024-11-01 01:00:08,016 [ scc.git] DEBUG notebooks/pixel_classification_zarr.ipynb | 651 ----------------------
2024-11-01 01:00:08,016 [ scc.git] DEBUG scripts/pixel_classification.py | 4 +-
2024-11-01 01:00:08,016 [ scc.git] DEBUG 12 files changed, 631 insertions(+), 929 deletions(-)
2024-11-01 01:00:08,016 [ scc.git] DEBUG delete mode 100644 .github/workflows/binder_badge.yml
2024-11-01 01:00:08,016 [ scc.git] DEBUG create mode 100644 .github/workflows/build.yml
2024-11-01 01:00:08,016 [ scc.git] DEBUG delete mode 100644 .github/workflows/repo2docker.yml
2024-11-01 01:00:08,016 [ scc.git] DEBUG create mode 100644 notebooks/pipelines/ilastik14-Nov-2024.ilp
2024-11-01 01:00:08,016 [ scc.git] DEBUG delete mode 100644 notebooks/pixel_classification_zarr.ipynb
2024-11-01 01:00:08,146 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:08,147 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:08,191 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,197 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:08,234 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:08,243 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f02118e4e80> has no local changes
2024-11-01 01:00:08,244 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-ilastik
Already up to date.
Merged PRs:
- PR 36 jburel 'Build issue'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:08,255 [ scc.git] DEBUG [detached HEAD ae2cbf5] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:08,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:08,255 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:08,555 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-introduction/pulls HTTP/1.1" 200 2
2024-11-01 01:00:08,556 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:08,556 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-11-01 01:00:08,556 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,556 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,562 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:08,567 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:08,567 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:08,572 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:08,577 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:08,577 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:08,577 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,577 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,581 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:08,620 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,620 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,625 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:08,664 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:08,670 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e429790> has no local changes
2024-11-01 01:00:08,670 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-introduction
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:08,678 [ scc.git] DEBUG [detached HEAD 78249d6] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:08,679 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:08,679 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:08,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-iviewer/pulls HTTP/1.1" 200 2
2024-11-01 01:00:08,962 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:08,962 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-11-01 01:00:08,962 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,962 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,968 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:08,973 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:08,973 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:08,978 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:08,984 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:08,984 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:08,984 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:08,984 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:08,989 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:09,027 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:09,027 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:09,032 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:09,068 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:09,074 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e497fa0> has no local changes
2024-11-01 01:00:09,074 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-iviewer
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:09,081 [ scc.git] DEBUG [detached HEAD a6bb9c0] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:09,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:09,082 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:09,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/pulls HTTP/1.1" 200 None
2024-11-01 01:00:09,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3 HTTP/1.1" 200 None
2024-11-01 01:00:10,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/issues/3/comments HTTP/1.1" 200 None
2024-11-01 01:00:10,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2024-11-01 01:00:11,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 01:00:11,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/commits/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5 HTTP/1.1" 200 None
2024-11-01 01:00:12,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-java/statuses/31294bfa7f63d9dbaa984a386e6db9a945cc0fa5?per_page=1 HTTP/1.1" 200 2
2024-11-01 01:00:12,334 [ scc.repo] DEBUG - PR 3 jburel 'fix build failure on rtd'
2024-11-01 01:00:12,334 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:12,335 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-11-01 01:00:12,335 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:12,335 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:12,340 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:12,344 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:12,344 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:12,349 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:12,354 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:12,354 [ scc.git] DEBUG Calling 'git fetch origin pull/3/head'
2024-11-01 01:00:12,648 [ scc.git] DEBUG From https://github.com/ome/omero-guide-java
2024-11-01 01:00:12,648 [ scc.git] DEBUG * branch refs/pull/3/head -> FETCH_HEAD
2024-11-01 01:00:12,653 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:12,653 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:12,653 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:12,659 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2024-11-01 01:00:12,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:12,671 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 3 (fix build failure on rtd) 31294bfa7f63d9dbaa984a386e6db9a945cc0fa5'
2024-11-01 01:00:12,680 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 01:00:12,682 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2024-11-01 01:00:12,682 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2024-11-01 01:00:12,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:12,813 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:12,855 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:12,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:12,861 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:12,902 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:12,908 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3f9e80> has no local changes
2024-11-01 01:00:12,908 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:12,917 [ scc.git] DEBUG [detached HEAD 40a3e3b] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:12,917 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:12,918 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:13,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-matlab/pulls HTTP/1.1" 200 2
2024-11-01 01:00:13,216 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:13,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-11-01 01:00:13,216 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:13,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:13,223 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:13,228 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:13,228 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:13,234 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:13,239 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:13,239 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:13,239 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:13,239 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:13,245 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:13,288 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:13,288 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:13,293 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:13,338 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:13,343 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c402fd0> has no local changes
2024-11-01 01:00:13,344 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-matlab
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:13,351 [ scc.git] DEBUG [detached HEAD bff66b2] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:13,351 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:13,352 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:13,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/pulls HTTP/1.1" 200 None
2024-11-01 01:00:14,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4 HTTP/1.1" 200 None
2024-11-01 01:00:14,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/issues/4/comments HTTP/1.1" 200 None
2024-11-01 01:00:15,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2024-11-01 01:00:15,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 01:00:16,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/commits/4b6e2511fe820a323b2311e2b39910b6b79fcf6a HTTP/1.1" 200 None
2024-11-01 01:00:16,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-mde/statuses/4b6e2511fe820a323b2311e2b39910b6b79fcf6a?per_page=1 HTTP/1.1" 200 2
2024-11-01 01:00:16,486 [ scc.repo] DEBUG - PR 4 pwalczysko 'Remove relative reference when it does not work'
2024-11-01 01:00:16,486 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:16,486 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-11-01 01:00:16,486 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:16,486 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:16,491 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:16,495 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:16,496 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:16,500 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:16,505 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:16,505 [ scc.git] DEBUG Calling 'git fetch origin pull/4/head'
2024-11-01 01:00:16,908 [ scc.git] DEBUG From https://github.com/ome/omero-guide-mde
2024-11-01 01:00:16,909 [ scc.git] DEBUG * branch refs/pull/4/head -> FETCH_HEAD
2024-11-01 01:00:16,913 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:16,913 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:16,913 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:16,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2024-11-01 01:00:16,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:16,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 4 (Remove relative reference when it does not work) 4b6e2511fe820a323b2311e2b39910b6b79fcf6a'
2024-11-01 01:00:16,941 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 01:00:16,943 [ scc.git] DEBUG docs/mde_customizeObjects.rst | 4 ++--
2024-11-01 01:00:16,943 [ scc.git] DEBUG docs/mde_customizeView.rst | 4 ++--
2024-11-01 01:00:16,943 [ scc.git] DEBUG 2 files changed, 4 insertions(+), 4 deletions(-)
2024-11-01 01:00:17,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:17,074 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:17,114 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:17,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:17,119 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:17,156 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:17,163 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020e4299d0> has no local changes
2024-11-01 01:00:17,163 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:17,171 [ scc.git] DEBUG [detached HEAD 9d3541f] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:17,172 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:17,172 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:17,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-orbit/pulls HTTP/1.1" 200 2
2024-11-01 01:00:17,529 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:17,529 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-11-01 01:00:17,529 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:17,529 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:17,535 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:17,540 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:17,540 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:17,545 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:17,550 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:17,551 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:17,551 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:17,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:17,561 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:17,607 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:17,607 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:17,611 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:17,652 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:17,658 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3a84f0> has no local changes
2024-11-01 01:00:17,659 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-orbit
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:17,667 [ scc.git] DEBUG [detached HEAD d500d36] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:17,667 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:17,667 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:17,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls HTTP/1.1" 200 2
2024-11-01 01:00:17,930 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:17,930 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-11-01 01:00:17,931 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:17,931 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:17,936 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:17,941 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:17,941 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:17,946 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:17,954 [ scc.git] DEBUG Updating 0875cf1..908b335
2024-11-01 01:00:19,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-parade/pulls/1 HTTP/1.1" 200 None
2024-11-01 01:00:19,222 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:19,222 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:19,222 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:19,227 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:19,268 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:19,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:19,274 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:19,315 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:19,323 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3bf2e0> has no local changes
2024-11-01 01:00:19,323 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:19,332 [ scc.git] DEBUG [detached HEAD d3f5f7c] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:19,332 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:19,332 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:19,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-python/pulls HTTP/1.1" 200 2
2024-11-01 01:00:19,625 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:19,626 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-11-01 01:00:19,626 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:19,626 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:19,631 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:19,636 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:19,636 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:19,641 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:19,646 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:19,646 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:19,646 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:19,646 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:19,650 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:19,688 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:19,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:19,694 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:19,733 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:19,740 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c37ec10> has no local changes
2024-11-01 01:00:19,740 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-python
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:19,750 [ scc.git] DEBUG [detached HEAD 05f0d80] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:19,750 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:19,751 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:20,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-qupath/pulls HTTP/1.1" 200 2
2024-11-01 01:00:20,030 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:20,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-11-01 01:00:20,030 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:20,030 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:20,035 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:20,040 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:20,041 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:20,046 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:20,052 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:20,052 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:20,052 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:20,053 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:20,058 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:20,095 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:20,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:20,100 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:20,137 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:20,142 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3286a0> has no local changes
2024-11-01 01:00:20,143 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-qupath
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:20,150 [ scc.git] DEBUG [detached HEAD d95343d] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:20,150 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:20,151 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:20,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/pulls HTTP/1.1" 200 None
2024-11-01 01:00:20,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11 HTTP/1.1" 200 None
2024-11-01 01:00:21,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/issues/11/comments HTTP/1.1" 200 None
2024-11-01 01:00:21,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2024-11-01 01:00:22,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2024-11-01 01:00:22,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/commits/990828ddac8bc276820c2fa5952182f56b0ab241 HTTP/1.1" 200 None
2024-11-01 01:00:23,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-r/statuses/990828ddac8bc276820c2fa5952182f56b0ab241?per_page=1 HTTP/1.1" 200 2
2024-11-01 01:00:23,297 [ scc.repo] DEBUG - PR 11 jburel 'fix build failure on rtd'
2024-11-01 01:00:23,297 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:23,297 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-11-01 01:00:23,297 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:23,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:23,304 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:23,308 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:23,309 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:23,314 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:23,320 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:23,320 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head'
2024-11-01 01:00:23,637 [ scc.git] DEBUG From https://github.com/ome/omero-guide-r
2024-11-01 01:00:23,637 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD
2024-11-01 01:00:23,642 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:23,642 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:23,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:23,648 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...990828ddac8bc276820c2fa5952182f56b0ab241'
2024-11-01 01:00:23,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:23,659 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 11 (fix build failure on rtd) 990828ddac8bc276820c2fa5952182f56b0ab241'
2024-11-01 01:00:23,671 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2024-11-01 01:00:23,674 [ scc.git] DEBUG .readthedocs.yaml | 8 ++++----
2024-11-01 01:00:23,674 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 4 deletions(-)
2024-11-01 01:00:23,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:23,814 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:23,855 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:23,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:23,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:23,901 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:23,907 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3285e0> has no local changes
2024-11-01 01:00:23,908 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:23,916 [ scc.git] DEBUG [detached HEAD 25042e1] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:23,916 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:23,916 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:24,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls HTTP/1.1" 200 2
2024-11-01 01:00:24,216 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:24,216 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-11-01 01:00:24,216 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:24,216 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:24,222 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:24,227 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:24,227 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:24,232 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:24,242 [ scc.git] DEBUG Updating f5038ce..bb21e02
2024-11-01 01:00:24,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-scripts/pulls/2 HTTP/1.1" 200 None
2024-11-01 01:00:24,865 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:24,865 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:24,865 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:24,870 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:24,910 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:24,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:24,916 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:24,959 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:24,965 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c380cd0> has no local changes
2024-11-01 01:00:24,965 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-scripts
Updating f5038ce..bb21e02
Previously merged:
- PR 2 jburel 'fix build failure on rtd'
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:24,974 [ scc.git] DEBUG [detached HEAD 0776ef9] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:24,975 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:24,975 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:25,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-trackmate/pulls HTTP/1.1" 200 2
2024-11-01 01:00:25,271 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:25,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-11-01 01:00:25,271 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,271 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,276 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:25,281 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:25,281 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:25,288 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:25,294 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:25,294 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:25,294 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,299 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:25,339 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,339 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,344 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:25,384 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:25,390 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c35be20> has no local changes
2024-11-01 01:00:25,390 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-trackmate
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:25,397 [ scc.git] DEBUG [detached HEAD 0ce3e72] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:25,398 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:25,398 [ scc.repo] DEBUG ## PRs found:
2024-11-01 01:00:25,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-guide-upload/pulls HTTP/1.1" 200 2
2024-11-01 01:00:25,674 [ scc.repo] DEBUG ## Branches found:
2024-11-01 01:00:25,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-11-01 01:00:25,674 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,680 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2024-11-01 01:00:25,685 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2024-11-01 01:00:25,686 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2024-11-01 01:00:25,691 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2024-11-01 01:00:25,696 [ scc.git] DEBUG Already up to date.
2024-11-01 01:00:25,697 [ scc.git] DEBUG ## Unique users: []
2024-11-01 01:00:25,697 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,697 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,702 [ scc.git] DEBUG Calling 'git submodule update'
2024-11-01 01:00:25,745 [ scc.git] DEBUG Get sha1 of %s
2024-11-01 01:00:25,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2024-11-01 01:00:25,754 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:25,795 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:25,802 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020c3447c0> has no local changes
2024-11-01 01:00:25,802 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:25,810 [ scc.git] DEBUG [detached HEAD 9ba462a] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:25,811 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:25,811 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2024-11-01 01:00:25,884 [ scc.config] DEBUG Found submodule.cellprofiler.url
2024-11-01 01:00:26,050 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:26,065 [ scc.config] DEBUG Found submodule.download.url
2024-11-01 01:00:26,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:26,443 [ scc.config] DEBUG Found submodule.figure.url
2024-11-01 01:00:26,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:26,822 [ scc.config] DEBUG Found submodule.fiji.url
2024-11-01 01:00:27,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:27,201 [ scc.config] DEBUG Found submodule.fpbioimage.url
2024-11-01 01:00:27,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:27,578 [ scc.config] DEBUG Found submodule.ilastik.url
2024-11-01 01:00:27,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:27,977 [ scc.config] DEBUG Found submodule.introduction.url
2024-11-01 01:00:28,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:28,360 [ scc.config] DEBUG Found submodule.iviewer.url
2024-11-01 01:00:28,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:28,737 [ scc.config] DEBUG Found submodule.java.url
2024-11-01 01:00:29,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:29,118 [ scc.config] DEBUG Found submodule.matlab.url
2024-11-01 01:00:29,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:29,511 [ scc.config] DEBUG Found submodule.mde.url
2024-11-01 01:00:29,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:29,884 [ scc.config] DEBUG Found submodule.orbit.url
2024-11-01 01:00:30,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:30,266 [ scc.config] DEBUG Found submodule.parade.url
2024-11-01 01:00:30,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:30,645 [ scc.config] DEBUG Found submodule.python.url
2024-11-01 01:00:31,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:31,020 [ scc.config] DEBUG Found submodule.qupath.url
2024-11-01 01:00:31,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:31,399 [ scc.config] DEBUG Found submodule.r.url
2024-11-01 01:00:31,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:31,788 [ scc.config] DEBUG Found submodule.scripts.url
2024-11-01 01:00:32,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:32,169 [ scc.config] DEBUG Found submodule.trackmate.url
2024-11-01 01:00:32,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:32,548 [ scc.config] DEBUG Found submodule.upload.url
2024-11-01 01:00:32,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2024-11-01 01:00:32,937 [ scc.git] DEBUG Calling 'git status --porcelain'
2024-11-01 01:00:33,039 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f020f7878b0> has local changes
2024-11-01 01:00:33,039 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-guides
Excluded PRs:
- PR 23 jburel 'Remove submodules' (exclude comment)
Already up to date.
Repository: ome/omero-guide-cellprofiler
Already up to date.
Merged PRs:
- PR 24 jburel 'Remove binder'
Repository: ome/omero-guide-download
Updating 4b1b912..a27d196
Previously merged:
Repository: ome/omero-guide-figure
Already up to date.
Merged PRs:
- PR 14 will-moore 'Table data by roi'
Repository: ome/omero-guide-fiji
Excluded PRs:
- PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
Already up to date.
Repository: ome/omero-guide-fpbioimage
Already up to date.
Repository: ome/omero-guide-ilastik
Already up to date.
Merged PRs:
- PR 36 jburel 'Build issue'
Repository: ome/omero-guide-introduction
Already up to date.
Repository: ome/omero-guide-iviewer
Already up to date.
Repository: ome/omero-guide-java
Already up to date.
Merged PRs:
- PR 3 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-matlab
Already up to date.
Repository: ome/omero-guide-mde
Already up to date.
Merged PRs:
- PR 4 pwalczysko 'Remove relative reference when it does not work'
Repository: ome/omero-guide-orbit
Already up to date.
Repository: ome/omero-guide-parade
Updating 0875cf1..908b335
Previously merged:
- PR 1 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-python
Already up to date.
Repository: ome/omero-guide-qupath
Already up to date.
Repository: ome/omero-guide-r
Already up to date.
Merged PRs:
- PR 11 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-scripts
Updating f5038ce..bb21e02
Previously merged:
- PR 2 jburel 'fix build failure on rtd'
Repository: ome/omero-guide-trackmate
Already up to date.
Repository: ome/omero-guide-upload
Already up to date.
Generated by OMERO-guides-push#214 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-guides-push/214/)'
2024-11-01 01:00:33,052 [ scc.git] DEBUG [detached HEAD 9304cea] merge master -Dorg -Ssuccess-only
2024-11-01 01:00:33,052 [ scc.merge] INFO Repository: ome/omero-guides
2024-11-01 01:00:33,052 [ scc.git] DEBUG 20 files changed, 38 insertions(+), 38 deletions(-)
2024-11-01 01:00:33,052 [ scc.merge] INFO Excluded PRs:
2024-11-01 01:00:33,052 [ scc.merge] INFO - PR 23 jburel 'Remove submodules' (exclude comment)
2024-11-01 01:00:33,052 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,052 [ scc.merge] INFO
2024-11-01 01:00:33,052 [ scc.merge] INFO
2024-11-01 01:00:33,052 [ scc.merge] INFO Repository: ome/omero-guide-cellprofiler
2024-11-01 01:00:33,052 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,052 [ scc.merge] INFO
2024-11-01 01:00:33,052 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,053 [ scc.merge] INFO - PR 24 jburel 'Remove binder'
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO Repository: ome/omero-guide-download
2024-11-01 01:00:33,053 [ scc.merge] INFO Updating 4b1b912..a27d196
2024-11-01 01:00:33,053 [ scc.merge] INFO Previously merged:
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO Repository: ome/omero-guide-figure
2024-11-01 01:00:33,053 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,053 [ scc.merge] INFO - PR 14 will-moore 'Table data by roi'
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO Repository: ome/omero-guide-fiji
2024-11-01 01:00:33,053 [ scc.merge] INFO Excluded PRs:
2024-11-01 01:00:33,053 [ scc.merge] INFO - PR 24 oeway 'Disable FilamentDetector in Fiji' (user: oeway)
2024-11-01 01:00:33,053 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO Repository: ome/omero-guide-fpbioimage
2024-11-01 01:00:33,053 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,053 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-ilastik
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,054 [ scc.merge] INFO - PR 36 jburel 'Build issue'
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-introduction
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-iviewer
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-java
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,054 [ scc.merge] INFO - PR 3 jburel 'fix build failure on rtd'
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-matlab
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-mde
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,054 [ scc.merge] INFO - PR 4 pwalczysko 'Remove relative reference when it does not work'
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-orbit
2024-11-01 01:00:33,054 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO
2024-11-01 01:00:33,054 [ scc.merge] INFO Repository: ome/omero-guide-parade
2024-11-01 01:00:33,054 [ scc.merge] INFO Updating 0875cf1..908b335
2024-11-01 01:00:33,055 [ scc.merge] INFO Previously merged:
2024-11-01 01:00:33,055 [ scc.merge] INFO - PR 1 jburel 'fix build failure on rtd'
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-python
2024-11-01 01:00:33,055 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-qupath
2024-11-01 01:00:33,055 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-r
2024-11-01 01:00:33,055 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Merged PRs:
2024-11-01 01:00:33,055 [ scc.merge] INFO - PR 11 jburel 'fix build failure on rtd'
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-scripts
2024-11-01 01:00:33,055 [ scc.merge] INFO Updating f5038ce..bb21e02
2024-11-01 01:00:33,055 [ scc.merge] INFO Previously merged:
2024-11-01 01:00:33,055 [ scc.merge] INFO - PR 2 jburel 'fix build failure on rtd'
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-trackmate
2024-11-01 01:00:33,055 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO Repository: ome/omero-guide-upload
2024-11-01 01:00:33,055 [ scc.merge] INFO Already up to date.
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] INFO
2024-11-01 01:00:33,055 [ scc.merge] DEBUG Cleaning remote branches created for merging
2024-11-01 01:00:33,055 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,061 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/cellprofiler
2024-11-01 01:00:33,061 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,067 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/download
2024-11-01 01:00:33,067 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,071 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/figure
2024-11-01 01:00:33,071 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fiji
2024-11-01 01:00:33,076 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/fpbioimage
2024-11-01 01:00:33,081 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/ilastik
2024-11-01 01:00:33,086 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,091 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/introduction
2024-11-01 01:00:33,091 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/iviewer
2024-11-01 01:00:33,096 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/java
2024-11-01 01:00:33,102 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,106 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,107 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/matlab
2024-11-01 01:00:33,107 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,112 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/mde
2024-11-01 01:00:33,112 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/orbit
2024-11-01 01:00:33,117 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,122 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,122 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/parade
2024-11-01 01:00:33,123 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/python
2024-11-01 01:00:33,127 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,132 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/qupath
2024-11-01 01:00:33,132 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,136 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/r
2024-11-01 01:00:33,136 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,142 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/scripts
2024-11-01 01:00:33,142 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/trackmate
2024-11-01 01:00:33,147 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
2024-11-01 01:00:33,152 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push/upload
2024-11-01 01:00:33,152 [ scc.git] DEBUG Calling 'git remote'
2024-11-01 01:00:33,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-guides-push
Update component versions
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python3: can't open file '/home/omero/workspace/OMERO-guides-push/download/setup.py': [Errno 2] No such file or directory
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python3: can't open file '/home/omero/workspace/OMERO-guides-push/parade/setup.py': [Errno 2] No such file or directory
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python3: can't open file '/home/omero/workspace/OMERO-guides-push/qupath/setup.py': [Errno 2] No such file or directory
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python3: can't open file '/home/omero/workspace/OMERO-guides-push/trackmate/setup.py': [Errno 2] No such file or directory
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python3: can't open file '/home/omero/workspace/OMERO-guides-push/upload/setup.py': [Errno 2] No such file or directory
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Commit all component version changes
Entering 'cellprofiler'
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2024-11-01 01:01:52,101 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-guides/tree/merge_ci
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