08:15:25 Started by upstream project "Trigger" build number 379 08:15:25 originally caused by: 08:15:25 Started by user devspace 08:15:25 Running as SYSTEM 08:15:25 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 08:15:25 The recommended git tool is: NONE 08:15:25 No credentials specified 08:15:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 08:15:25 Fetching changes from the remote Git repository 08:15:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 08:15:25 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 08:15:25 > git --version # timeout=10 08:15:25 > git --version # 'git version 2.43.5' 08:15:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:15:33 > git rev-parse origin/merge_ci^{commit} # timeout=10 08:15:33 Checking out Revision 8f6c6bb49d8be128ebe4c3713028f6765933a0f0 (origin/merge_ci) 08:15:33 > git config core.sparsecheckout # timeout=10 08:15:33 > git checkout -f 8f6c6bb49d8be128ebe4c3713028f6765933a0f0 # timeout=10 08:15:33 Commit message: "Add version.properties to etc/omero.properties" 08:15:33 > git rev-list --no-walk 939bb1af5931b8542f4b093a4bf1cb109e6f3143 # timeout=10 08:15:33 Cleaning workspace 08:15:33 > git rev-parse --verify HEAD # timeout=10 08:15:33 Resetting working tree 08:15:33 > git reset --hard # timeout=10 08:15:33 > git clean -fdx # timeout=10 08:15:34 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 321 08:15:34 [OMERO-build] $ /bin/bash -xe /tmp/jenkins11332454405252143364.sh 08:15:34 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 08:15:34 + cd src 08:15:34 + export OMERO_BRANCH=merge_ci 08:15:34 + OMERO_BRANCH=merge_ci 08:15:34 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 08:15:34 + source /home/omero/settings.env 08:15:34 ++ OMERO_DB_HOST=pg 08:15:34 ++ OMERO_DB_USER=postgres 08:15:34 ++ OMERO_DB_PASS= 08:15:34 ++ OMERO_ROOT_PASS=omero 08:15:34 ++ OMERO_DATA_DIR=/OMERO 08:15:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:15:34 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 08:15:38 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 08:15:40 Collecting zeroc-ice==3.6.5 08:15:41 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 08:15:42 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 08:15:42 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:15:43 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 08:15:43 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.8.0) 08:15:44 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.6) 08:15:44 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 08:15:44 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 08:15:44 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 08:15:44 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 08:15:44 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 08:15:44 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 08:15:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 08:15:44 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 08:15:44 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 08:15:44 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 08:15:44 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 08:15:44 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 08:15:44 WARNING: You are using pip version 21.2.3; however, version 25.0.1 is available. 08:15:44 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 08:15:44 + source docs/hudson/OMERO.sh 08:15:44 ++ set -e 08:15:44 ++ set -u 08:15:44 ++ set -x 08:15:44 ++ source docs/hudson/functions.sh 08:15:44 ++ echo Building merge_ci 08:15:44 Building merge_ci 08:15:44 ++ python3 ./build.py build-dev release-all 08:15:44 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:15:45 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:15:47 08:15:47 check-ivy: 08:15:47 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 08:15:47 Created dir: /home/omero/workspace/OMERO-build/src/target 08:15:48 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:15:48 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:49 08:15:49 build-scons: 08:15:49 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:15:49 No sub-builds to iterate on 08:15:50 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:15:50 08:15:50 buildlist: 08:15:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:15:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:50 08:15:50 clean: 08:15:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:50 08:15:50 python-clean: 08:15:50 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:15:51 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-8f6c6bb49d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:15:51 warnings.warn( 08:15:51 running clean 08:15:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 08:15:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:15:51 08:15:51 python-clean: 08:15:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:15:51 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-8f6c6bb49d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:15:51 warnings.warn( 08:15:51 running clean 08:15:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 08:15:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:15:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:15:51 08:15:51 python-clean: 08:15:51 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 08:15:51 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-543-8f6c6bb49d-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 08:15:51 warnings.warn( 08:15:51 running clean 08:15:51 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 08:15:51 Deleting directory /home/omero/workspace/OMERO-build/src/target 08:15:52 08:15:52 build-scons: 08:15:52 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 08:15:52 08:15:52 build: 08:15:52 No sub-builds to iterate on 08:15:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:15:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:15:52 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:15:52 08:15:52 tools-init: 08:15:52 no-op 08:15:52 08:15:52 retrieve: 08:15:52 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:15:52 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:15:53 WARNING: An illegal reflective access operation has occurred 08:15:53 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 08:15:53 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 08:15:53 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 08:15:53 WARNING: All illegal access operations will be denied in a future release 08:16:28 08:16:28 prepare: 08:16:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:16:28 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 08:16:28 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 08:16:28 08:16:28 pre-compile: 08:16:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:16:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:16:29 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:16:29 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:16:29 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 08:16:29 08:16:29 compile: 08:16:29 no-op 08:16:29 08:16:29 package: 08:16:29 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 08:16:29 08:16:29 install: 08:16:29 :: delivering :: omero#omero_client;working@0ac93bfd5614 :: 5.6.3-543-8f6c6bb49d-ice36 :: integration :: Fri Feb 21 08:15:52 UTC 2025 08:16:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 08:16:29 :: publishing :: omero#omero_client 08:16:29 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-8f6c6bb49d-ice36/omero_client-5.6.3-543-8f6c6bb49d-ice36.jar 08:16:29 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-543-8f6c6bb49d-ice36/omero_client-5.6.3-543-8f6c6bb49d-ice36.xml 08:16:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:16:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:16:30 08:16:30 retrieve: 08:16:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:16:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:16:30 Entering /home/omero/workspace/OMERO-build/src/components/tools... 08:16:30 08:16:30 dist: 08:16:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 08:16:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 08:16:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:16:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 08:16:30 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 08:16:30 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 08:16:30 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 08:16:30 Entering /home/omero/workspace/OMERO-build/src/components/tests... 08:16:30 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:16:31 08:16:31 copy-licenses: 08:16:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:16:31 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 08:16:31 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 08:16:31 08:16:31 copy-history: 08:16:31 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 08:16:31 08:16:31 copy-etc: 08:16:31 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 08:16:32 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 08:16:32 08:16:32 copy-sql: 08:16:32 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 08:16:40 08:16:40 copy-server: 08:16:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 08:16:40 08:16:40 copy-client: 08:16:40 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 08:16:41 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 08:16:41 08:16:41 update-version: 08:16:41 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 08:16:41 08:16:41 create-workdirs: 08:16:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 08:16:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 08:16:41 08:16:41 copy-luts: 08:16:41 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:16:41 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 08:16:43 08:16:43 test-compile: 08:16:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 08:16:43 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:16:43 08:16:43 testng-init: 08:16:43 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:16:43 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:16:47 08:16:47,467 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 08:16:47 08:16:47,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - No custom configurators were discovered as a service. 08:16:47 08:16:47,470 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 08:16:47 08:16:47,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 08:16:47 08:16:47,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 08:16:47 08:16:47,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 08:16:47 08:16:47,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 08:16:47 08:16:47,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 08:16:47 08:16:47,477 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 08:16:47 08:16:47,478 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 08:16:47 08:16:47,478 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:16:47 08:16:47,479 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1a596879 - Resource [logback.xml] occurs multiple times on the classpath. 08:16:47 08:16:47,479 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1a596879 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 08:16:47 08:16:47,479 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@1a596879 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 08:16:47 08:16:47,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 08:16:47 08:16:47,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 08:16:47 08:16:47,731 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 08:16:47 08:16:47,733 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@35ee7dc8 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 08:16:47 08:16:47,733 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@35ee7dc8 - Please move "immediateFlush" property into the enclosing appender. 08:16:47 08:16:47,803 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@35ee7dc8 - Setting the "immediateFlush" property of the enclosing appender to true 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 08:16:47 08:16:47,804 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 08:16:47 08:16:47,805 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@33dbd53 - End of configuration. 08:16:47 08:16:47,807 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@33260ecd - Registering current configuration as safe fallback point 08:16:47 08:16:47,807 |-INFO in ch.qos.logback.classic.util.ContextInitializer@74a89061 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 330 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 08:16:47 08:16:47 lifecycle.test-compile: 08:16:47 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:16:47 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 08:16:48 warning: [options] bootstrap class path not set in conjunction with -source 8 08:16:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:51 import omero.grid.RawAccessRequest; 08:16:51 ^ 08:16:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:51 import omero.grid.RawAccessRequest; 08:16:51 ^ 08:16:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:51 import omero.grid.RawAccessRequest; 08:16:51 ^ 08:16:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:51 import omero.model.ImportJob; 08:16:51 ^ 08:16:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:16:51 import omero.model.ImportJobI; 08:16:51 ^ 08:16:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 08:16:52 IObject link = (IObject) linkClass.newInstance(); 08:16:52 ^ 08:16:52 where T is a type-variable: 08:16:52 T extends Object declared in class Class 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 08:16:53 T copy = (T) obj.getClass().newInstance(); 08:16:53 ^ 08:16:53 where T is a type-variable: 08:16:53 T extends Object declared in class Class 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:53 RawAccessRequest raw = new RawAccessRequest(); 08:16:53 ^ 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:53 RawAccessRequest raw = new RawAccessRequest(); 08:16:53 ^ 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:16:53 raw.repoUuid = legacy.root().getHash().getValue(); 08:16:53 ^ 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 08:16:53 raw.command = "rm"; 08:16:53 ^ 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 08:16:53 raw.args = Arrays.asList(path); 08:16:53 ^ 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 08:16:53 final IObject link = linkClass.newInstance(); 08:16:53 ^ 08:16:53 where T is a type-variable: 08:16:53 T extends Object declared in class Class 08:16:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 08:16:53 originalLink.setChild(annotationClass.newInstance()); 08:16:53 ^ 08:16:53 where T is a type-variable: 08:16:53 T extends Object declared in class Class 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:16:54 RoiResult r = svc.findByImage(id, new RoiOptions()); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:54 final RawAccessRequest request = new RawAccessRequest(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:54 final RawAccessRequest request = new RawAccessRequest(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:16:54 request.repoUuid = repo.root().getHash().getValue(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 08:16:54 request.command = "exists"; 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 08:16:54 request.args = Collections.singletonList(dirPath); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:54 final RawAccessRequest request = new RawAccessRequest(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 08:16:54 final RawAccessRequest request = new RawAccessRequest(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 08:16:54 request.repoUuid = repo.root().getHash().getValue(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 08:16:54 request.command = "exists"; 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 08:16:54 request.args = Collections.singletonList(dirName); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:54 final ImportJob importJob = new ImportJobI(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 08:16:54 final ImportJob importJob = new ImportJobI(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 08:16:54 importJob.setImageName(omero.rtypes.rstring(name)); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 08:16:54 importJob.setImageDescription(omero.rtypes.rstring(desc)); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:16:54 final String savedName = sent.getImageName().getValue().toString(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:16:54 final String savedDesc = sent.getImageDescription().getValue().toString(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 08:16:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 08:16:54 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 08:16:54 ^ 08:16:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 08:16:54 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 08:16:54 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 RoiResult r = svc.findByImage(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 08:16:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 08:16:55 table = svc.getTable(f.getId().getValue()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 RoiResult r = svc.findByImage(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:16:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 08:16:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 08:16:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 08:16:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:16:55 svc.getShapeStatsRestricted( 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 08:16:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:16:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:16:55 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:16:55 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:16:55 request.typesToIgnore = Collections.singletonList("Annotation"); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 08:16:55 request.typesToIgnore = Collections.singletonList("Annotation"); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:16:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:16:55 p2.setRelatedTo(p1); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:16:55 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:16:55 pixels1.setRelatedTo(pixels2); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:16:55 Pixels pixels = pixels1.getRelatedTo(); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:16:55 Assert.assertNull(pixels1.getRelatedTo()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 08:16:55 pixels1.setRelatedTo(pixels2); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:16:55 Pixels pixels = pixels1.getRelatedTo(); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 08:16:55 Assert.assertNull(pixels1.getRelatedTo()); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 08:16:55 ^ 08:16:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 08:16:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 08:16:55 ^ 08:16:55 Note: Some input files use unchecked or unsafe operations. 08:16:55 Note: Recompile with -Xlint:unchecked for details. 08:16:55 88 warnings 08:16:55 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_31372945.tmp 08:16:55 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 08:16:55 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:16:55 :: delivering :: omero#OmeroJava-test;working@0ac93bfd5614 :: 5.6.3-543-8f6c6bb49d-ice36 :: integration :: Fri Feb 21 08:16:43 UTC 2025 08:16:55 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 08:16:55 :: publishing :: omero#OmeroJava-test 08:16:55 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-8f6c6bb49d-ice36.jar 08:16:55 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-543-8f6c6bb49d-ice36.xml 08:16:55 08:16:55 build-eclipse: 08:16:55 No sub-builds to iterate on 08:16:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 08:16:56 08:16:56 retrieve: 08:16:56 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 08:16:56 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 08:16:59 08:16:59 prepare: 08:16:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 08:17:01 08:17:01 release-clients: 08:17:01 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-543-8f6c6bb49d-ice36.zip 08:17:07 08:17:07 release-zip: 08:17:07 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-543-8f6c6bb49d-ice36.zip 08:17:19 08:17:19 BUILD SUCCESSFUL 08:17:19 Total time: 1 minute 34 seconds 08:17:19 ++ '[' -d .git ']' 08:17:19 ++ python3 ./build.py release-src 08:17:19 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 08:17:20 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 08:17:20 08:17:20 release-src-git: 08:17:20 Releasing openmicroscopy-5.6.3-543-8f6c6bb49d-ice36 08:17:22 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-8f6c6bb49d-ice36.zip 08:17:22 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-543-8f6c6bb49d-ice36-base.zip 08:17:24 08:17:24 BUILD SUCCESSFUL 08:17:24 Total time: 4 seconds 08:17:24 ++ echo BUILD_NUMBER=325 08:17:24 ++ echo OMERO_BRANCH=merge_ci 08:17:24 ++ git_info 08:17:24 +++ git rev-parse HEAD 08:17:24 ++ HEAD=8f6c6bb49d8be128ebe4c3713028f6765933a0f0 08:17:24 ++ git log --max-count=1 8f6c6bb49d8be128ebe4c3713028f6765933a0f0 08:17:24 ++ env 08:17:24 ++ sort 08:17:24 Archiving artifacts 08:17:53 Finished: SUCCESS