09:28:58 Started by upstream project "Trigger" build number 521 09:28:58 originally caused by: 09:28:58 Started by user devspace 09:28:58 Running as SYSTEM 09:28:58 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 09:28:58 The recommended git tool is: NONE 09:28:58 No credentials specified 09:28:58 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 09:28:58 Fetching changes from the remote Git repository 09:28:58 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 09:28:58 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 09:28:58 > git --version # timeout=10 09:28:58 > git --version # 'git version 2.43.5' 09:28:58 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:28:59 > git rev-parse origin/develop^{commit} # timeout=10 09:28:59 Checking out Revision b2fa7db992516bdb66e199decb9e22af44bf2c27 (origin/develop) 09:28:59 > git config core.sparsecheckout # timeout=10 09:28:59 > git checkout -f b2fa7db992516bdb66e199decb9e22af44bf2c27 # timeout=30 09:28:59 Commit message: "Merge pull request #6433 from jburel/numpy_update" 09:28:59 > git rev-list --no-walk 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=10 09:28:59 Cleaning workspace 09:28:59 > git rev-parse --verify HEAD # timeout=10 09:28:59 Resetting working tree 09:28:59 > git reset --hard # timeout=10 09:28:59 > git clean -fdx # timeout=10 09:28:59 Copied 1 artifact from "OMERO-python-superbuild-build" build number 435 09:28:59 [OMERO-push] $ /bin/bash -xe /tmp/jenkins16883349531025752823.sh 09:28:59 + python3.11 -mvenv venv 09:29:02 + source /home/omero/workspace/OMERO-push/venv/bin/activate 09:29:02 ++ deactivate nondestructive 09:29:02 ++ '[' -n '' ']' 09:29:02 ++ '[' -n '' ']' 09:29:02 ++ hash -r 09:29:02 ++ '[' -n '' ']' 09:29:02 ++ unset VIRTUAL_ENV 09:29:02 ++ unset VIRTUAL_ENV_PROMPT 09:29:02 ++ '[' '!' nondestructive = nondestructive ']' 09:29:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 09:29:02 ++ export VIRTUAL_ENV 09:29:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:29:02 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:29:02 ++ export PATH 09:29:02 ++ '[' -n '' ']' 09:29:02 ++ '[' -z '' ']' 09:29:02 ++ _OLD_VIRTUAL_PS1= 09:29:02 ++ PS1='(venv) ' 09:29:02 ++ export PS1 09:29:02 ++ VIRTUAL_ENV_PROMPT='(venv) ' 09:29:02 ++ export VIRTUAL_ENV_PROMPT 09:29:02 ++ hash -r 09:29:02 + pip install -U pip 09:29:03 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.1.1) 09:29:03 + pip install -U scc 09:29:03 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 09:29:03 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1) 09:29:03 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2) 09:29:03 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 09:29:03 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10) 09:29:03 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 09:29:03 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 09:29:03 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 09:29:03 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 09:29:03 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0) 09:29:03 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3) 09:29:03 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1) 09:29:03 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0) 09:29:03 Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18) 09:29:03 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2) 09:29:03 Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1) 09:29:03 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22) 09:29:03 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1) 09:29:03 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10) 09:29:03 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31) 09:29:03 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2) 09:29:03 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12) 09:29:03 + test -e src 09:29:03 + cd src 09:29:03 ++ git config github.user 09:29:03 + user=snoopycrimecop 09:29:03 + scc merge develop --no-ask --reset --shallow -S success-only 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Merging Pull Request(s) based on develop 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 09:29:07 2025-06-16 09:29:07,939 [ scc.merge] INFO Excluding Pull Request(s) without successful status 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO Repository: ome/openmicroscopy 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO Excluded PRs: 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6431 snoopycrimecop 'update dependencies' (status: failure) 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure) 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO Already up to date. 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO Merged PRs: 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6309 jburel 'add try block' 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system' 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO - PR 6429 sbesson 'Update integration tests to be compliant with pytest 8.4.0' 09:29:30 2025-06-16 09:29:30,579 [ scc.merge] INFO 09:29:30 + cp etc/omero.properties etc/omero.properties.bak 09:29:30 + rm etc/omero.properties 09:29:30 + touch etc/omero.properties 09:29:30 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 09:29:30 + ne=249 09:29:30 ++ sed -n 1,249p etc/omero.properties.bak 09:29:30 + line='## 09:29:30 ## omero.properties 09:29:30 ## ---------------- 09:29:30 ## 09:29:30 ## DO NOT EDIT! 09:29:30 ## 09:29:30 ## 09:29:30 ## Any of these properties can be altered by using `omero config`. MODIFYING 09:29:30 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 09:29:30 ## at compile time! 09:29:30 ## 09:29:30 ## For an overview of these properties, see 09:29:30 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 09:29:30 ## 09:29:30 ## Properties marked with "DEVELOPMENT" should not be used in production. 09:29:30 09:29:30 # Comma separated list of Ice transports available to clients. The default 09:29:30 # value ("ssl,tcp") instructs Ice to open the ports specified by the 09:29:30 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 09:29:30 # will prevent all non-encrypted connections to the OMERO server. 09:29:30 # 09:29:30 # Additionally, there are two experimental values for using websockets: 09:29:30 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 09:29:30 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 09:29:30 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 09:29:30 # 09:29:30 # Note: When using websockets behind a web server like nginx, additional 09:29:30 # configuration may be needed. 09:29:30 omero.client.icetransports=ssl,tcp 09:29:30 09:29:30 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 09:29:30 # server 09:29:30 omero.ports.prefix= 09:29:30 09:29:30 # The Glacier2 SSL port number to use 09:29:30 omero.ports.ssl=4064 09:29:30 09:29:30 # The Glacier2 TCP port number to use (unencrypted) 09:29:30 omero.ports.tcp=4063 09:29:30 09:29:30 # The Glacier2 WSS port number to use 09:29:30 omero.ports.wss=4066 09:29:30 09:29:30 # The Glacier2 WS port number to use (unencrypted) 09:29:30 omero.ports.ws=4065 09:29:30 09:29:30 # The IceGrid registry port number to use 09:29:30 omero.ports.registry=4061 09:29:30 09:29:30 ############################################# 09:29:30 ## JVM configuration 09:29:30 ## 09:29:30 ## Note: changes to the omero.jvmcfg properties 09:29:30 ## will *not* be reflected in OMERO.server 09:29:30 ## since they are defined in OMERO.py. 09:29:30 ############################################# 09:29:30 ## (For documentation only) 09:29:30 # Memory strategy which will be used by default. 09:29:30 # Options include: percent, manual 09:29:30 omero.jvmcfg.strategy=percent 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Explicit value for the `-Xmx` argument, e.g. 09:29:30 # "1g" 09:29:30 omero.jvmcfg.heap_size= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Explicit value for the MaxPermSize argument 09:29:30 # to the JVM, e.g. "500M". Ignored for Java8+ 09:29:30 omero.jvmcfg.perm_gen= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Toggles on or off heap dumps on OOMs. Default is "off". 09:29:30 # The special value "tmp" will create the heap dumps in 09:29:30 # your temp directory. 09:29:30 omero.jvmcfg.heap_dump= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Used only by the percent strategy. An integer between 0 09:29:30 # and 100 which is the percent of active memory that will 09:29:30 # be used by the service. 09:29:30 omero.jvmcfg.percent= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Contains other parameters which should be passed to the 09:29:30 # JVM. The value of "append" is treated as if it were on 09:29:30 # the command line so will be separated on whitespace. 09:29:30 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 09:29:30 # results in two new arguments. 09:29:30 # Note that when using `config set` from the command line 09:29:30 # one may need to give a prior `--` option to prevent a value 09:29:30 # starting with `-` from already being parsed as an option, 09:29:30 # and values may need quoting to prevent whitespace or other 09:29:30 # significant characters from being interpreted prematurely. 09:29:30 09:29:30 omero.jvmcfg.append= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Manual override of the total system memory that 09:29:30 # OMERO will *think* is present on the local OS (MB). 09:29:30 # If unset, an attempt will be made to detect the actual 09:29:30 # amount: first by using the Python library `psutil` and 09:29:30 # if that is not installed, by running a Java tool. If 09:29:30 # neither works, 4.0GB is assumed. 09:29:30 omero.jvmcfg.system_memory= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Suggestion for strategies as to the minimum memory 09:29:30 # that they will use for calculating JVM settings (MB). 09:29:30 omero.jvmcfg.min_system_memory=3414 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Suggestion for strategies as to the maximum memory 09:29:30 # that they will use for calculating JVM settings (MB). 09:29:30 omero.jvmcfg.max_system_memory=48000 09:29:30 09:29:30 09:29:30 ############################################# 09:29:30 ## Logging properties 09:29:30 ## 09:29:30 ## Note: changes to the default omero.logging values in 09:29:30 ## this file will *not* be reflected in OMERO.server 09:29:30 ## since they are defined in OMERO.py 09:29:30 ############################################# 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Relative server directory where the log files should be stored. 09:29:30 omero.logging.directory=var/log/ 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Whether the server log files should be rotated at a certain time 09:29:30 # interval. If true, log files will be rolled over at midnight. 09:29:30 # Otherwise, log files will be rolled over at a predetermined size, 09:29:30 # see omero.logging.logsize for more information. 09:29:30 omero.logging.timedlog=false 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # If omero.logging.timedlog is false or unset, specifies the 09:29:30 # maximum size of the server log files in bytes above which a 09:29:30 # new log file should be created. 09:29:30 omero.logging.logsize=5000000 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # If omero.logging.timedlog is false or unset, specifies the 09:29:30 # number of old server log files that should be kept. Old log 09:29:30 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 09:29:30 omero.logging.lognum=9 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Specifies the threshold for the Python servers log files. Logging messages 09:29:30 # which are less severe than this value will be ignored. For a list of 09:29:30 # available values, see https://docs.python.org/3/library/logging.html#levels. 09:29:30 omero.logging.level=20 09:29:30 09:29:30 ############################################# 09:29:30 ## Ice overrides 09:29:30 ## 09:29:30 ## Though not used directly by OMERO, a number 09:29:30 ## of properties prefixed with "Ice.*" will 09:29:30 ## alter the behavior of the OMERO runtime 09:29:30 ## by configuring the Ice communicators. For a 09:29:30 ## full listing see: 09:29:30 ## 09:29:30 ## http://doc.zeroc.com/display/Ice/Property+Reference 09:29:30 ## For more information see 09:29:30 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 09:29:30 ############################################# 09:29:30 09:29:30 # Disable IPv6 by setting to 0. Only needed in 09:29:30 # certain situations. 09:29:30 Ice.IPv6=1 09:29:30 09:29:30 # Glacier2Template IceSSL defaults and overrides, 09:29:30 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 09:29:30 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 09:29:30 # update the corresponding IceSSL. property. 09:29:30 omero.glacier2.IceSSL= 09:29:30 09:29:30 # Glacier2Template SSL maximum allowed protocol (mac bug) 09:29:30 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 09:29:30 # Glacier2Template SSL allowed cipher suites 09:29:30 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 09:29:30 # Glacier2Template SSL verification requirements 09:29:30 omero.glacier2.IceSSL.VerifyPeer=0 09:29:30 # Glacier2Template SSL allowed protocols 09:29:30 omero.glacier2.IceSSL.Protocols=tls1 09:29:30 09:29:30 # Override the default set of OMERO services. 09:29:30 # For example, to run OMERO.server with Blitz and Tables only 09:29:30 # (i.e. disable Processor, DropBox, Indexer, PixelData) 09:29:30 # set this to ``master:Blitz-0,Tables-0``. 09:29:30 # Also use this to distribute OMERO services across multiple nodes, 09:29:30 # for example: 09:29:30 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 09:29:30 # See 09:29:30 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 09:29:30 omero.server.nodedescriptors= 09:29:30 09:29:30 ############################################# 09:29:30 ## Darwin (OS X) specific defaults for templated configuration files only. 09:29:30 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 09:29:30 ## file. 09:29:30 ## Do not set these properties in ``omero config``, instead set the original 09:29:30 ## ``xxx.yyy`` property 09:29:30 ############################################# 09:29:30 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Name of the Python module to use when starting the Tables service 09:29:30 omero.tables.module=runTables 09:29:30 09:29:30 ############################################# 09:29:30 ## Server product name for release artifacts 09:29:30 ############################################# 09:29:30 product.name=OMERO.server 09:29:30 09:29:30 ############################################# 09:29:30 ### Properties below this marker are ignored by 09:29:30 ### omero.install.config_parser.PropertyParser 09:29:30 ### END 09:29:30 09:29:30 ############################################# 09:29:30 ## Library versions 09:29:30 ############################################# 09:29:30 ## 09:29:30 versions.findbugs=1.2.1 09:29:30 versions.ice36=3.6.5 09:29:30 versions.ice36_lib=36 09:29:30 ## internal 09:29:30 versions.omeroshares36=3.6.3 09:29:30 versions.omeromock36=3.6.3 09:29:30 versions.icedb36=3.6.3 09:29:30 versions.ipython=1.2.1 09:29:30 09:29:30 versions.janino=2.5.10 09:29:30 09:29:30 versions.reportng=1.1.1 09:29:30 09:29:30 versions.testng=7.5 09:29:30 versions.velocity=1.4 09:29:30 09:29:30 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 09:29:30 versions.omero-scripts-url=${versions.omero-pypi} 09:29:30 09:29:30 ### 09:29:30 ### Appended Values 09:29:30 ### 09:29:30 09:29:30 ## Internal dependencies' 09:29:30 + echo '## 09:29:30 ## omero.properties 09:29:30 ## ---------------- 09:29:30 ## 09:29:30 ## DO NOT EDIT! 09:29:30 ## 09:29:30 ## 09:29:30 ## Any of these properties can be altered by using `omero config`. MODIFYING 09:29:30 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 09:29:30 ## at compile time! 09:29:30 ## 09:29:30 ## For an overview of these properties, see 09:29:30 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 09:29:30 ## 09:29:30 ## Properties marked with "DEVELOPMENT" should not be used in production. 09:29:30 09:29:30 # Comma separated list of Ice transports available to clients. The default 09:29:30 # value ("ssl,tcp") instructs Ice to open the ports specified by the 09:29:30 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 09:29:30 # will prevent all non-encrypted connections to the OMERO server. 09:29:30 # 09:29:30 # Additionally, there are two experimental values for using websockets: 09:29:30 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 09:29:30 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 09:29:30 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 09:29:30 # 09:29:30 # Note: When using websockets behind a web server like nginx, additional 09:29:30 # configuration may be needed. 09:29:30 omero.client.icetransports=ssl,tcp 09:29:30 09:29:30 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 09:29:30 # server 09:29:30 omero.ports.prefix= 09:29:30 09:29:30 # The Glacier2 SSL port number to use 09:29:30 omero.ports.ssl=4064 09:29:30 09:29:30 # The Glacier2 TCP port number to use (unencrypted) 09:29:30 omero.ports.tcp=4063 09:29:30 09:29:30 # The Glacier2 WSS port number to use 09:29:30 omero.ports.wss=4066 09:29:30 09:29:30 # The Glacier2 WS port number to use (unencrypted) 09:29:30 omero.ports.ws=4065 09:29:30 09:29:30 # The IceGrid registry port number to use 09:29:30 omero.ports.registry=4061 09:29:30 09:29:30 ############################################# 09:29:30 ## JVM configuration 09:29:30 ## 09:29:30 ## Note: changes to the omero.jvmcfg properties 09:29:30 ## will *not* be reflected in OMERO.server 09:29:30 ## since they are defined in OMERO.py. 09:29:30 ############################################# 09:29:30 ## (For documentation only) 09:29:30 # Memory strategy which will be used by default. 09:29:30 # Options include: percent, manual 09:29:30 omero.jvmcfg.strategy=percent 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Explicit value for the `-Xmx` argument, e.g. 09:29:30 # "1g" 09:29:30 omero.jvmcfg.heap_size= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Explicit value for the MaxPermSize argument 09:29:30 # to the JVM, e.g. "500M". Ignored for Java8+ 09:29:30 omero.jvmcfg.perm_gen= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Toggles on or off heap dumps on OOMs. Default is "off". 09:29:30 # The special value "tmp" will create the heap dumps in 09:29:30 # your temp directory. 09:29:30 omero.jvmcfg.heap_dump= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Used only by the percent strategy. An integer between 0 09:29:30 # and 100 which is the percent of active memory that will 09:29:30 # be used by the service. 09:29:30 omero.jvmcfg.percent= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Contains other parameters which should be passed to the 09:29:30 # JVM. The value of "append" is treated as if it were on 09:29:30 # the command line so will be separated on whitespace. 09:29:30 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 09:29:30 # results in two new arguments. 09:29:30 # Note that when using `config set` from the command line 09:29:30 # one may need to give a prior `--` option to prevent a value 09:29:30 # starting with `-` from already being parsed as an option, 09:29:30 # and values may need quoting to prevent whitespace or other 09:29:30 # significant characters from being interpreted prematurely. 09:29:30 09:29:30 omero.jvmcfg.append= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Manual override of the total system memory that 09:29:30 # OMERO will *think* is present on the local OS (MB). 09:29:30 # If unset, an attempt will be made to detect the actual 09:29:30 # amount: first by using the Python library `psutil` and 09:29:30 # if that is not installed, by running a Java tool. If 09:29:30 # neither works, 4.0GB is assumed. 09:29:30 omero.jvmcfg.system_memory= 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Suggestion for strategies as to the minimum memory 09:29:30 # that they will use for calculating JVM settings (MB). 09:29:30 omero.jvmcfg.min_system_memory=3414 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Suggestion for strategies as to the maximum memory 09:29:30 # that they will use for calculating JVM settings (MB). 09:29:30 omero.jvmcfg.max_system_memory=48000 09:29:30 09:29:30 09:29:30 ############################################# 09:29:30 ## Logging properties 09:29:30 ## 09:29:30 ## Note: changes to the default omero.logging values in 09:29:30 ## this file will *not* be reflected in OMERO.server 09:29:30 ## since they are defined in OMERO.py 09:29:30 ############################################# 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Relative server directory where the log files should be stored. 09:29:30 omero.logging.directory=var/log/ 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Whether the server log files should be rotated at a certain time 09:29:30 # interval. If true, log files will be rolled over at midnight. 09:29:30 # Otherwise, log files will be rolled over at a predetermined size, 09:29:30 # see omero.logging.logsize for more information. 09:29:30 omero.logging.timedlog=false 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # If omero.logging.timedlog is false or unset, specifies the 09:29:30 # maximum size of the server log files in bytes above which a 09:29:30 # new log file should be created. 09:29:30 omero.logging.logsize=5000000 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # If omero.logging.timedlog is false or unset, specifies the 09:29:30 # number of old server log files that should be kept. Old log 09:29:30 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 09:29:30 omero.logging.lognum=9 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Specifies the threshold for the Python servers log files. Logging messages 09:29:30 # which are less severe than this value will be ignored. For a list of 09:29:30 # available values, see https://docs.python.org/3/library/logging.html#levels. 09:29:30 omero.logging.level=20 09:29:30 09:29:30 ############################################# 09:29:30 ## Ice overrides 09:29:30 ## 09:29:30 ## Though not used directly by OMERO, a number 09:29:30 ## of properties prefixed with "Ice.*" will 09:29:30 ## alter the behavior of the OMERO runtime 09:29:30 ## by configuring the Ice communicators. For a 09:29:30 ## full listing see: 09:29:30 ## 09:29:30 ## http://doc.zeroc.com/display/Ice/Property+Reference 09:29:30 ## For more information see 09:29:30 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 09:29:30 ############################################# 09:29:30 09:29:30 # Disable IPv6 by setting to 0. Only needed in 09:29:30 # certain situations. 09:29:30 Ice.IPv6=1 09:29:30 09:29:30 # Glacier2Template IceSSL defaults and overrides, 09:29:30 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 09:29:30 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 09:29:30 # update the corresponding IceSSL. property. 09:29:30 omero.glacier2.IceSSL= 09:29:30 09:29:30 # Glacier2Template SSL maximum allowed protocol (mac bug) 09:29:30 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 09:29:30 # Glacier2Template SSL allowed cipher suites 09:29:30 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 09:29:30 # Glacier2Template SSL verification requirements 09:29:30 omero.glacier2.IceSSL.VerifyPeer=0 09:29:30 # Glacier2Template SSL allowed protocols 09:29:30 omero.glacier2.IceSSL.Protocols=tls1 09:29:30 09:29:30 # Override the default set of OMERO services. 09:29:30 # For example, to run OMERO.server with Blitz and Tables only 09:29:30 # (i.e. disable Processor, DropBox, Indexer, PixelData) 09:29:30 # set this to ``master:Blitz-0,Tables-0``. 09:29:30 # Also use this to distribute OMERO services across multiple nodes, 09:29:30 # for example: 09:29:30 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 09:29:30 # See 09:29:30 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 09:29:30 omero.server.nodedescriptors= 09:29:30 09:29:30 ############################################# 09:29:30 ## Darwin (OS X) specific defaults for templated configuration files only. 09:29:30 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 09:29:30 ## file. 09:29:30 ## Do not set these properties in ``omero config``, instead set the original 09:29:30 ## ``xxx.yyy`` property 09:29:30 ############################################# 09:29:30 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 09:29:30 09:29:30 ## (For documentation only) 09:29:30 # Name of the Python module to use when starting the Tables service 09:29:30 omero.tables.module=runTables 09:29:30 09:29:30 ############################################# 09:29:30 ## Server product name for release artifacts 09:29:30 ############################################# 09:29:30 product.name=OMERO.server 09:29:30 09:29:30 ############################################# 09:29:30 ### Properties below this marker are ignored by 09:29:30 ### omero.install.config_parser.PropertyParser 09:29:30 ### END 09:29:30 09:29:30 ############################################# 09:29:30 ## Library versions 09:29:30 ############################################# 09:29:30 ## 09:29:30 versions.findbugs=1.2.1 09:29:30 versions.ice36=3.6.5 09:29:30 versions.ice36_lib=36 09:29:30 ## internal 09:29:30 versions.omeroshares36=3.6.3 09:29:30 versions.omeromock36=3.6.3 09:29:30 versions.icedb36=3.6.3 09:29:30 versions.ipython=1.2.1 09:29:30 09:29:30 versions.janino=2.5.10 09:29:30 09:29:30 versions.reportng=1.1.1 09:29:30 09:29:30 versions.testng=7.5 09:29:30 versions.velocity=1.4 09:29:30 09:29:30 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 09:29:30 versions.omero-scripts-url=${versions.omero-pypi} 09:29:30 09:29:30 ### 09:29:30 ### Appended Values 09:29:30 ### 09:29:30 09:29:30 ## Internal dependencies' 09:29:30 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 09:29:30 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 09:29:30 + echo versions.scripts-prefix= 09:29:30 + echo versions.scripts=merge_ci 09:29:30 + cat /home/omero/workspace/OMERO-push/version.properties 09:29:30 + git commit -a -m 'Add version.properties to etc/omero.properties' 09:29:30 [detached HEAD a47686dc89] Add version.properties to etc/omero.properties 09:29:30 1 file changed, 46 insertions(+), 7 deletions(-) 09:29:30 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 09:29:32 To github.com:snoopycrimecop/openmicroscopy.git 09:29:32 + 41e7d4e5b5...a47686dc89 HEAD -> merge_ci (forced update) 09:29:32 Finished: SUCCESS