13:20:39 Started by upstream project "Trigger" build number 468 13:20:39 originally caused by: 13:20:39 Started by user devspace 13:20:39 Running as SYSTEM 13:20:40 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 13:20:40 The recommended git tool is: NONE 13:20:40 No credentials specified 13:20:40 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 13:20:40 Fetching changes from the remote Git repository 13:20:40 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 13:20:40 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 13:20:40 > git --version # timeout=10 13:20:40 > git --version # 'git version 2.43.5' 13:20:40 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 13:20:43 > git rev-parse origin/merge_ci^{commit} # timeout=10 13:20:43 Checking out Revision 7c47519573a1417d072c4dcd8454f3b33e9343fb (origin/merge_ci) 13:20:43 > git config core.sparsecheckout # timeout=10 13:20:43 > git checkout -f 7c47519573a1417d072c4dcd8454f3b33e9343fb # timeout=10 13:20:43 Commit message: "Add version.properties to etc/omero.properties" 13:20:43 > git rev-list --no-walk 09a99dcf825c579bbe0540abbc09eaccf63d1eb5 # timeout=10 13:20:43 Cleaning workspace 13:20:43 > git rev-parse --verify HEAD # timeout=10 13:20:43 Resetting working tree 13:20:43 > git reset --hard # timeout=10 13:20:43 > git clean -fdx # timeout=10 13:20:43 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 396 13:20:43 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1596747835685718598.sh 13:20:43 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 13:20:43 + cd src 13:20:43 + export OMERO_BRANCH=merge_ci 13:20:43 + OMERO_BRANCH=merge_ci 13:20:43 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 13:20:43 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 13:20:43 + source /home/omero/settings.env 13:20:44 ++ OMERO_DB_HOST=pg 13:20:44 ++ OMERO_DB_USER=postgres 13:20:44 ++ OMERO_DB_PASS= 13:20:44 ++ OMERO_ROOT_PASS=omero 13:20:44 ++ OMERO_DATA_DIR=/OMERO 13:20:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 13:20:44 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 13:20:48 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 13:20:48 Collecting zeroc-ice==3.6.5 13:20:49 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 13:20:51 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.0 MB/s eta 0:00:00 13:20:51 Installing collected packages: zeroc-ice 13:20:52 Successfully installed zeroc-ice-3.6.5 13:20:52 13:20:52 [notice] A new release of pip available: 22.3.1 -> 25.1.1 13:20:52 [notice] To update, run: python3.11 -m pip install --upgrade pip 13:20:52 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 13:20:52 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 13:20:53 Collecting setuptools<66 13:20:53 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 13:20:53 Collecting omero-py 13:20:53 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 13:20:53 Collecting urllib3<2 13:20:53 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 13:20:53 Collecting appdirs 13:20:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 13:20:53 Collecting future 13:20:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 13:20:54 Collecting numpy<3 13:20:54 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 13:20:55 Collecting Pillow>=10.0.0 13:20:55 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 13:20:55 Collecting PyYAML 13:20:55 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 13:20:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 13:20:55 Collecting requests 13:20:55 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 13:20:55 Collecting portalocker 13:20:55 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 13:20:55 Collecting charset-normalizer<4,>=2 13:20:55 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 13:20:55 Collecting idna<4,>=2.5 13:20:56 Using cached idna-3.10-py3-none-any.whl (70 kB) 13:20:56 Collecting certifi>=2017.4.17 13:20:56 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 13:20:56 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 13:20:56 Attempting uninstall: setuptools 13:20:56 Found existing installation: setuptools 65.5.1 13:20:56 Uninstalling setuptools-65.5.1: 13:20:56 Successfully uninstalled setuptools-65.5.1 13:21:01 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 13:21:01 13:21:01 [notice] A new release of pip available: 22.3.1 -> 25.1.1 13:21:01 [notice] To update, run: python3.11 -m pip install --upgrade pip 13:21:02 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 13:21:02 ++ deactivate nondestructive 13:21:02 ++ '[' -n '' ']' 13:21:02 ++ '[' -n '' ']' 13:21:02 ++ hash -r 13:21:02 ++ '[' -n '' ']' 13:21:02 ++ unset VIRTUAL_ENV 13:21:02 ++ unset VIRTUAL_ENV_PROMPT 13:21:02 ++ '[' '!' nondestructive = nondestructive ']' 13:21:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 13:21:02 ++ export VIRTUAL_ENV 13:21:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:21:02 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 13:21:02 ++ export PATH 13:21:02 ++ '[' -n '' ']' 13:21:02 ++ '[' -z '' ']' 13:21:02 ++ _OLD_VIRTUAL_PS1= 13:21:02 ++ PS1='(omero-virtualenv) ' 13:21:02 ++ export PS1 13:21:02 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 13:21:02 ++ export VIRTUAL_ENV_PROMPT 13:21:02 ++ hash -r 13:21:02 + source docs/hudson/OMERO.sh 13:21:02 ++ set -e 13:21:02 ++ set -u 13:21:02 ++ set -x 13:21:02 ++ source docs/hudson/functions.sh 13:21:02 ++ echo Building merge_ci 13:21:02 Building merge_ci 13:21:02 ++ python3 ./build.py build-dev release-all 13:21:02 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:21:03 13:21:03 check-ivy: 13:21:03 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 13:21:03 Created dir: /home/omero/workspace/OMERO-build/src/target 13:21:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:21:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:21:05 13:21:05 build-scons: 13:21:05 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:21:06 No sub-builds to iterate on 13:21:06 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:21:07 13:21:07 buildlist: 13:21:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:21:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:21:07 13:21:07 clean: 13:21:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:21:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:21:07 13:21:07 python-clean: 13:21:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:21:07 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:21:07 warnings.warn( 13:21:07 running clean 13:21:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 13:21:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:21:08 13:21:08 python-clean: 13:21:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:21:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:21:08 warnings.warn( 13:21:08 running clean 13:21:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 13:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:21:08 13:21:08 python-clean: 13:21:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 13:21:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-7c47519573-ice36-b404') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 13:21:08 warnings.warn( 13:21:08 running clean 13:21:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 13:21:08 Deleting directory /home/omero/workspace/OMERO-build/src/target 13:21:08 13:21:08 build-scons: 13:21:08 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 13:21:08 13:21:08 build: 13:21:08 No sub-builds to iterate on 13:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:21:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:21:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:21:09 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:21:09 13:21:09 tools-init: 13:21:09 no-op 13:21:09 13:21:09 retrieve: 13:21:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:21:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:21:09 WARNING: An illegal reflective access operation has occurred 13:21:09 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 13:21:09 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 13:21:09 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 13:21:09 WARNING: All illegal access operations will be denied in a future release 13:21:48 13:21:48 prepare: 13:21:48 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:21:48 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 13:21:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 13:21:48 13:21:48 pre-compile: 13:21:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:21:48 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:21:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:21:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:21:49 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 13:21:49 13:21:49 compile: 13:21:49 no-op 13:21:49 13:21:49 package: 13:21:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 13:21:50 13:21:50 install: 13:21:50 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-7c47519573-ice36-b404 :: integration :: Thu May 08 13:21:09 UTC 2025 13:21:50 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 13:21:50 :: publishing :: omero#omero_client 13:21:50 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-7c47519573-ice36-b404/omero_client-5.6.3-552-7c47519573-ice36-b404.jar 13:21:50 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-7c47519573-ice36-b404/omero_client-5.6.3-552-7c47519573-ice36-b404.xml 13:21:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:21:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:21:50 13:21:50 retrieve: 13:21:50 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:21:50 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:21:50 Entering /home/omero/workspace/OMERO-build/src/components/tools... 13:21:50 13:21:50 dist: 13:21:50 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 13:21:50 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 13:21:50 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:21:50 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 13:21:50 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 13:21:50 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 13:21:50 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 13:21:50 Entering /home/omero/workspace/OMERO-build/src/components/tests... 13:21:51 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:21:51 13:21:51 copy-licenses: 13:21:51 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:21:51 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 13:21:51 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 13:21:52 13:21:52 copy-history: 13:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 13:21:52 13:21:52 copy-etc: 13:21:52 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 13:21:52 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 13:21:52 13:21:52 copy-sql: 13:21:52 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 13:22:02 13:22:02 copy-server: 13:22:02 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 13:22:02 13:22:02 copy-client: 13:22:02 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 13:22:03 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 13:22:03 13:22:03 update-version: 13:22:03 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 13:22:03 13:22:03 create-workdirs: 13:22:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 13:22:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 13:22:03 13:22:03 copy-luts: 13:22:03 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:22:03 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 13:22:04 13:22:04 test-compile: 13:22:04 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 13:22:04 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 13:22:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:22:05 13:22:05 testng-init: 13:22:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:22:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:22:09 13:22:08,861 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 13:22:09 13:22:08,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - No custom configurators were discovered as a service. 13:22:09 13:22:08,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 13:22:09 13:22:08,867 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 13:22:09 13:22:08,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 13:22:09 13:22:08,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 13:22:09 13:22:08,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 13:22:09 13:22:08,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 13:22:09 13:22:08,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 13:22:09 13:22:08,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 13:22:09 13:22:08,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:22:09 13:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs multiple times on the classpath. 13:22:09 13:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 13:22:09 13:22:08,872 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d7c21b7 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 13:22:09 13:22:09,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 13:22:09 13:22:09,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 13:22:09 13:22:09,087 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 13:22:09 13:22:09,089 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 13:22:09 13:22:09,089 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - Please move "immediateFlush" property into the enclosing appender. 13:22:09 13:22:09,149 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@11f8bff1 - Setting the "immediateFlush" property of the enclosing appender to true 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 13:22:09 13:22:09,150 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 13:22:09 13:22:09,151 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3fb2306 - End of configuration. 13:22:09 13:22:09,153 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5531484a - Registering current configuration as safe fallback point 13:22:09 13:22:09,153 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6026c754 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 13:22:09 13:22:09 lifecycle.test-compile: 13:22:09 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:22:09 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 13:22:09 warning: [options] bootstrap class path not set in conjunction with -source 8 13:22:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:13 import omero.grid.RawAccessRequest; 13:22:13 ^ 13:22:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:13 import omero.grid.RawAccessRequest; 13:22:13 ^ 13:22:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:13 import omero.grid.RawAccessRequest; 13:22:13 ^ 13:22:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:13 import omero.model.ImportJob; 13:22:13 ^ 13:22:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:22:13 import omero.model.ImportJobI; 13:22:13 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 13:22:14 IObject link = (IObject) linkClass.newInstance(); 13:22:14 ^ 13:22:14 where T is a type-variable: 13:22:14 T extends Object declared in class Class 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 13:22:14 T copy = (T) obj.getClass().newInstance(); 13:22:14 ^ 13:22:14 where T is a type-variable: 13:22:14 T extends Object declared in class Class 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:14 RawAccessRequest raw = new RawAccessRequest(); 13:22:14 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:14 RawAccessRequest raw = new RawAccessRequest(); 13:22:14 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:22:14 raw.repoUuid = legacy.root().getHash().getValue(); 13:22:14 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 13:22:14 raw.command = "rm"; 13:22:14 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 13:22:14 raw.args = Arrays.asList(path); 13:22:14 ^ 13:22:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 13:22:14 final IObject link = linkClass.newInstance(); 13:22:14 ^ 13:22:14 where T is a type-variable: 13:22:14 T extends Object declared in class Class 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 13:22:15 originalLink.setChild(annotationClass.newInstance()); 13:22:15 ^ 13:22:15 where T is a type-variable: 13:22:15 T extends Object declared in class Class 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:22:15 RoiResult r = svc.findByImage(id, new RoiOptions()); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:15 final RawAccessRequest request = new RawAccessRequest(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:15 final RawAccessRequest request = new RawAccessRequest(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:22:15 request.repoUuid = repo.root().getHash().getValue(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 13:22:15 request.command = "exists"; 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 13:22:15 request.args = Collections.singletonList(dirPath); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:15 final RawAccessRequest request = new RawAccessRequest(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 13:22:15 final RawAccessRequest request = new RawAccessRequest(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 13:22:15 request.repoUuid = repo.root().getHash().getValue(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 13:22:15 request.command = "exists"; 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 13:22:15 request.args = Collections.singletonList(dirName); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:15 final ImportJob importJob = new ImportJobI(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 13:22:15 final ImportJob importJob = new ImportJobI(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 13:22:15 importJob.setImageName(omero.rtypes.rstring(name)); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 13:22:15 importJob.setImageDescription(omero.rtypes.rstring(desc)); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:15 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:22:15 final String savedName = sent.getImageName().getValue().toString(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:22:15 final String savedDesc = sent.getImageDescription().getValue().toString(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 13:22:15 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 13:22:15 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 13:22:15 ^ 13:22:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 13:22:15 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 13:22:15 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 RoiResult r = svc.findByImage(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 13:22:16 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 13:22:16 table = svc.getTable(f.getId().getValue()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 RoiResult r = svc.findByImage(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:22:16 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 13:22:16 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 13:22:16 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:22:16 svc.getShapeStatsRestricted( 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 13:22:16 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:22:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:22:16 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:22:16 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:22:16 request.typesToIgnore = Collections.singletonList("Annotation"); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 13:22:16 request.typesToIgnore = Collections.singletonList("Annotation"); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:22:16 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:22:16 p2.setRelatedTo(p1); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:22:16 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:22:16 pixels1.setRelatedTo(pixels2); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:22:16 Pixels pixels = pixels1.getRelatedTo(); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:22:16 Assert.assertNull(pixels1.getRelatedTo()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 13:22:16 pixels1.setRelatedTo(pixels2); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:22:16 Pixels pixels = pixels1.getRelatedTo(); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 13:22:16 Assert.assertNull(pixels1.getRelatedTo()); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 13:22:16 ^ 13:22:16 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 13:22:16 l = svc.getRoiMeasurements(image.getId().getValue(), options); 13:22:16 ^ 13:22:16 Note: Some input files use unchecked or unsafe operations. 13:22:16 Note: Recompile with -Xlint:unchecked for details. 13:22:16 88 warnings 13:22:16 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1332792171.tmp 13:22:16 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 13:22:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:22:16 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-7c47519573-ice36-b404 :: integration :: Thu May 08 13:22:04 UTC 2025 13:22:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 13:22:16 :: publishing :: omero#OmeroJava-test 13:22:16 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-7c47519573-ice36-b404.jar 13:22:16 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-7c47519573-ice36-b404.xml 13:22:16 13:22:16 build-eclipse: 13:22:16 No sub-builds to iterate on 13:22:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 13:22:17 13:22:17 retrieve: 13:22:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 13:22:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 13:22:19 13:22:19 prepare: 13:22:19 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 13:22:20 13:22:20 release-clients: 13:22:20 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-7c47519573-ice36-b404.zip 13:22:27 13:22:27 release-zip: 13:22:27 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-7c47519573-ice36-b404.zip 13:22:40 13:22:40 BUILD SUCCESSFUL 13:22:40 Total time: 1 minute 38 seconds 13:22:40 ++ '[' -d .git ']' 13:22:40 ++ python3 ./build.py release-src 13:22:40 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 13:22:41 13:22:41 release-src-git: 13:22:41 Releasing openmicroscopy-5.6.3-552-7c47519573-ice36-b404 13:22:43 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-7c47519573-ice36-b404.zip 13:22:43 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-7c47519573-ice36-b404-base.zip 13:22:44 13:22:44 BUILD SUCCESSFUL 13:22:44 Total time: 3 seconds 13:22:44 ++ echo BUILD_NUMBER=404 13:22:44 ++ echo OMERO_BRANCH=merge_ci 13:22:44 ++ git_info 13:22:44 +++ git rev-parse HEAD 13:22:44 ++ HEAD=7c47519573a1417d072c4dcd8454f3b33e9343fb 13:22:44 ++ git log --max-count=1 7c47519573a1417d072c4dcd8454f3b33e9343fb 13:22:44 ++ env 13:22:44 ++ sort 13:22:44 Archiving artifacts 13:23:13 Finished: SUCCESS