10:00:41 Started by upstream project "Trigger" build number 472 10:00:41 originally caused by: 10:00:41 Started by user devspace 10:00:41 Restarted from build #471, stage OMERO Jars 10:00:41 Running as SYSTEM 10:00:41 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 10:00:41 The recommended git tool is: NONE 10:00:41 No credentials specified 10:00:41 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 10:00:41 Fetching changes from the remote Git repository 10:00:41 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 10:00:41 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 10:00:41 > git --version # timeout=10 10:00:41 > git --version # 'git version 2.43.5' 10:00:41 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 10:00:42 > git rev-parse origin/merge_ci^{commit} # timeout=10 10:00:42 Checking out Revision ab249f4f3891c7216a1b899d9359c25158a80ade (origin/merge_ci) 10:00:42 > git config core.sparsecheckout # timeout=10 10:00:42 > git checkout -f ab249f4f3891c7216a1b899d9359c25158a80ade # timeout=10 10:00:42 Commit message: "Add version.properties to etc/omero.properties" 10:00:42 > git rev-list --no-walk dfb74c2a593556706f3df06534e339ba920b2eba # timeout=10 10:00:42 Cleaning workspace 10:00:42 > git rev-parse --verify HEAD # timeout=10 10:00:42 Resetting working tree 10:00:42 > git reset --hard # timeout=10 10:00:42 > git clean -fdx # timeout=10 10:00:42 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 398 10:00:42 [OMERO-build] $ /bin/bash -xe /tmp/jenkins14279508307349756071.sh 10:00:42 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 10:00:42 + cd src 10:00:42 + export OMERO_BRANCH=merge_ci 10:00:42 + OMERO_BRANCH=merge_ci 10:00:42 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 10:00:42 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 10:00:42 + source /home/omero/settings.env 10:00:42 ++ OMERO_DB_HOST=pg 10:00:42 ++ OMERO_DB_USER=postgres 10:00:42 ++ OMERO_DB_PASS= 10:00:42 ++ OMERO_ROOT_PASS=omero 10:00:42 ++ OMERO_DATA_DIR=/OMERO 10:00:42 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 10:00:42 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 10:00:46 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 10:00:46 Collecting zeroc-ice==3.6.5 10:00:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 10:00:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 7.8 MB/s eta 0:00:00 10:00:50 Installing collected packages: zeroc-ice 10:00:51 Successfully installed zeroc-ice-3.6.5 10:00:51 10:00:51 [notice] A new release of pip available: 22.3.1 -> 25.1.1 10:00:51 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:00:51 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 10:00:51 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 10:00:51 Collecting setuptools<66 10:00:51 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 10:00:52 Collecting omero-py 10:00:52 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 10:00:52 Collecting urllib3<2 10:00:52 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 10:00:52 Collecting appdirs 10:00:52 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 10:00:52 Collecting future 10:00:52 Using cached future-1.0.0-py3-none-any.whl (491 kB) 10:00:53 Collecting numpy<3 10:00:53 Using cached numpy-2.2.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.4 MB) 10:00:53 Collecting Pillow>=10.0.0 10:00:53 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 10:00:53 Collecting PyYAML 10:00:53 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 10:00:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 10:00:53 Collecting requests 10:00:53 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 10:00:53 Collecting portalocker 10:00:53 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 10:00:54 Collecting charset-normalizer<4,>=2 10:00:54 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 10:00:54 Collecting idna<4,>=2.5 10:00:54 Using cached idna-3.10-py3-none-any.whl (70 kB) 10:00:54 Collecting certifi>=2017.4.17 10:00:54 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 10:00:54 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 10:00:54 Attempting uninstall: setuptools 10:00:54 Found existing installation: setuptools 65.5.1 10:00:54 Uninstalling setuptools-65.5.1: 10:00:54 Successfully uninstalled setuptools-65.5.1 10:01:00 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.5 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 10:01:00 10:01:00 [notice] A new release of pip available: 22.3.1 -> 25.1.1 10:01:00 [notice] To update, run: python3.11 -m pip install --upgrade pip 10:01:00 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 10:01:00 ++ deactivate nondestructive 10:01:00 ++ '[' -n '' ']' 10:01:00 ++ '[' -n '' ']' 10:01:00 ++ hash -r 10:01:00 ++ '[' -n '' ']' 10:01:00 ++ unset VIRTUAL_ENV 10:01:00 ++ unset VIRTUAL_ENV_PROMPT 10:01:00 ++ '[' '!' nondestructive = nondestructive ']' 10:01:00 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 10:01:00 ++ export VIRTUAL_ENV 10:01:00 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:01:00 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 10:01:00 ++ export PATH 10:01:00 ++ '[' -n '' ']' 10:01:00 ++ '[' -z '' ']' 10:01:00 ++ _OLD_VIRTUAL_PS1= 10:01:00 ++ PS1='(omero-virtualenv) ' 10:01:00 ++ export PS1 10:01:00 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 10:01:00 ++ export VIRTUAL_ENV_PROMPT 10:01:00 ++ hash -r 10:01:00 + source docs/hudson/OMERO.sh 10:01:00 ++ set -e 10:01:00 ++ set -u 10:01:00 ++ set -x 10:01:00 ++ source docs/hudson/functions.sh 10:01:00 ++ echo Building merge_ci 10:01:00 Building merge_ci 10:01:00 ++ python3 ./build.py build-dev release-all 10:01:00 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:01:00 10:01:00 check-ivy: 10:01:00 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 10:01:00 Created dir: /home/omero/workspace/OMERO-build/src/target 10:01:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:01 10:01:01 build-scons: 10:01:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:01:01 No sub-builds to iterate on 10:01:01 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:01:01 10:01:01 buildlist: 10:01:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:02 10:01:02 clean: 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:02 10:01:02 python-clean: 10:01:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:01:02 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-ab249f4f38-ice36-b406') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:01:02 warnings.warn( 10:01:02 running clean 10:01:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:01:02 10:01:02 python-clean: 10:01:02 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:01:02 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-ab249f4f38-ice36-b406') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:01:02 warnings.warn( 10:01:02 running clean 10:01:02 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:02 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:03 10:01:03 python-clean: 10:01:03 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 10:01:03 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-ab249f4f38-ice36-b406') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 10:01:03 warnings.warn( 10:01:03 running clean 10:01:03 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 10:01:03 Deleting directory /home/omero/workspace/OMERO-build/src/target 10:01:03 10:01:03 build-scons: 10:01:03 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 10:01:03 10:01:03 build: 10:01:03 No sub-builds to iterate on 10:01:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:01:03 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:01:03 10:01:03 tools-init: 10:01:03 no-op 10:01:03 10:01:03 retrieve: 10:01:03 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:03 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:04 WARNING: An illegal reflective access operation has occurred 10:01:04 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 10:01:04 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 10:01:04 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 10:01:04 WARNING: All illegal access operations will be denied in a future release 10:01:36 10:01:36 prepare: 10:01:36 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:01:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 10:01:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 10:01:36 10:01:36 pre-compile: 10:01:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:01:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:01:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:01:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:01:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 10:01:37 10:01:37 compile: 10:01:37 no-op 10:01:37 10:01:37 package: 10:01:37 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 10:01:37 10:01:37 install: 10:01:37 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-ab249f4f38-ice36-b406 :: integration :: Fri May 09 10:01:03 UTC 2025 10:01:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 10:01:37 :: publishing :: omero#omero_client 10:01:37 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-ab249f4f38-ice36-b406/omero_client-5.6.3-552-ab249f4f38-ice36-b406.jar 10:01:37 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-ab249f4f38-ice36-b406/omero_client-5.6.3-552-ab249f4f38-ice36-b406.xml 10:01:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:38 10:01:38 retrieve: 10:01:38 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:38 Entering /home/omero/workspace/OMERO-build/src/components/tools... 10:01:38 10:01:38 dist: 10:01:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 10:01:38 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 10:01:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:01:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 10:01:38 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 10:01:38 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 10:01:38 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 10:01:38 Entering /home/omero/workspace/OMERO-build/src/components/tests... 10:01:38 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:01:38 10:01:38 copy-licenses: 10:01:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:01:38 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 10:01:38 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 10:01:38 10:01:38 copy-history: 10:01:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 10:01:38 10:01:38 copy-etc: 10:01:38 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 10:01:38 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 10:01:38 10:01:38 copy-sql: 10:01:38 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 10:01:42 10:01:42 copy-server: 10:01:42 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 10:01:43 10:01:43 copy-client: 10:01:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 10:01:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 10:01:44 10:01:44 update-version: 10:01:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 10:01:44 10:01:44 create-workdirs: 10:01:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 10:01:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 10:01:44 10:01:44 copy-luts: 10:01:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:01:44 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 10:01:44 10:01:44 test-compile: 10:01:44 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 10:01:44 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:01:45 10:01:45 testng-init: 10:01:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:48 10:01:47,716 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 10:01:48 10:01:47,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - No custom configurators were discovered as a service. 10:01:48 10:01:47,719 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 10:01:48 10:01:47,722 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 10:01:48 10:01:47,722 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 10:01:48 10:01:47,723 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 10:01:48 10:01:47,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 10:01:48 10:01:47,723 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 10:01:48 10:01:47,725 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 10:01:48 10:01:47,725 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 10:01:48 10:01:47,726 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:01:48 10:01:47,727 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@129bc797 - Resource [logback.xml] occurs multiple times on the classpath. 10:01:48 10:01:47,727 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@129bc797 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 10:01:48 10:01:47,727 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@129bc797 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 10:01:48 10:01:47,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 10:01:48 10:01:47,928 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 10:01:48 10:01:47,948 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 10:01:48 10:01:47,950 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3dd916d9 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 10:01:48 10:01:47,950 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3dd916d9 - Please move "immediateFlush" property into the enclosing appender. 10:01:48 10:01:48,011 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@3dd916d9 - Setting the "immediateFlush" property of the enclosing appender to true 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 10:01:48 10:01:48,012 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 10:01:48 10:01:48,014 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@7cdd8582 - End of configuration. 10:01:48 10:01:48,016 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@771047b4 - Registering current configuration as safe fallback point 10:01:48 10:01:48,016 |-INFO in ch.qos.logback.classic.util.ContextInitializer@769fbb26 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 291 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 10:01:48 10:01:48 lifecycle.test-compile: 10:01:48 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:01:48 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 10:01:48 warning: [options] bootstrap class path not set in conjunction with -source 8 10:01:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:49 import omero.grid.RawAccessRequest; 10:01:49 ^ 10:01:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:49 import omero.grid.RawAccessRequest; 10:01:49 ^ 10:01:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:49 import omero.grid.RawAccessRequest; 10:01:49 ^ 10:01:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:49 import omero.model.ImportJob; 10:01:49 ^ 10:01:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:01:49 import omero.model.ImportJobI; 10:01:49 ^ 10:01:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 10:01:50 IObject link = (IObject) linkClass.newInstance(); 10:01:50 ^ 10:01:50 where T is a type-variable: 10:01:50 T extends Object declared in class Class 10:01:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 10:01:50 T copy = (T) obj.getClass().newInstance(); 10:01:50 ^ 10:01:50 where T is a type-variable: 10:01:50 T extends Object declared in class Class 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:51 RawAccessRequest raw = new RawAccessRequest(); 10:01:51 ^ 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:51 RawAccessRequest raw = new RawAccessRequest(); 10:01:51 ^ 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:01:51 raw.repoUuid = legacy.root().getHash().getValue(); 10:01:51 ^ 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 10:01:51 raw.command = "rm"; 10:01:51 ^ 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 10:01:51 raw.args = Arrays.asList(path); 10:01:51 ^ 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 10:01:51 final IObject link = linkClass.newInstance(); 10:01:51 ^ 10:01:51 where T is a type-variable: 10:01:51 T extends Object declared in class Class 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 10:01:51 originalLink.setChild(annotationClass.newInstance()); 10:01:51 ^ 10:01:51 where T is a type-variable: 10:01:51 T extends Object declared in class Class 10:01:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:01:51 RoiResult r = svc.findByImage(id, new RoiOptions()); 10:01:51 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:52 final RawAccessRequest request = new RawAccessRequest(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:52 final RawAccessRequest request = new RawAccessRequest(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:01:52 request.repoUuid = repo.root().getHash().getValue(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 10:01:52 request.command = "exists"; 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 10:01:52 request.args = Collections.singletonList(dirPath); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:52 final RawAccessRequest request = new RawAccessRequest(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 10:01:52 final RawAccessRequest request = new RawAccessRequest(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 10:01:52 request.repoUuid = repo.root().getHash().getValue(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 10:01:52 request.command = "exists"; 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 10:01:52 request.args = Collections.singletonList(dirName); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:52 final ImportJob importJob = new ImportJobI(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 10:01:52 final ImportJob importJob = new ImportJobI(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 10:01:52 importJob.setImageName(omero.rtypes.rstring(name)); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 10:01:52 importJob.setImageDescription(omero.rtypes.rstring(desc)); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:01:52 final String savedName = sent.getImageName().getValue().toString(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:01:52 final String savedDesc = sent.getImageDescription().getValue().toString(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 10:01:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 10:01:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 10:01:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 RoiResult r = svc.findByImage(image.getId().getValue(), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 10:01:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 10:01:52 table = svc.getTable(f.getId().getValue()); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 RoiResult r = svc.findByImage(image.getId().getValue(), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 10:01:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:01:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 10:01:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 10:01:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 10:01:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:01:52 svc.getShapeStatsRestricted( 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 10:01:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 10:01:52 ^ 10:01:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:01:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:01:52 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:01:53 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:01:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:01:53 request.typesToIgnore = Collections.singletonList("Annotation"); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 10:01:53 request.typesToIgnore = Collections.singletonList("Annotation"); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:01:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:01:53 p2.setRelatedTo(p1); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:01:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:01:53 pixels1.setRelatedTo(pixels2); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:01:53 Pixels pixels = pixels1.getRelatedTo(); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:01:53 Assert.assertNull(pixels1.getRelatedTo()); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 10:01:53 pixels1.setRelatedTo(pixels2); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:01:53 Pixels pixels = pixels1.getRelatedTo(); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 10:01:53 Assert.assertNull(pixels1.getRelatedTo()); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 10:01:53 ^ 10:01:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 10:01:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 10:01:53 ^ 10:01:53 Note: Some input files use unchecked or unsafe operations. 10:01:53 Note: Recompile with -Xlint:unchecked for details. 10:01:53 88 warnings 10:01:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1576040156.tmp 10:01:53 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 10:01:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:53 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-ab249f4f38-ice36-b406 :: integration :: Fri May 09 10:01:44 UTC 2025 10:01:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 10:01:53 :: publishing :: omero#OmeroJava-test 10:01:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-ab249f4f38-ice36-b406.jar 10:01:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-ab249f4f38-ice36-b406.xml 10:01:53 10:01:53 build-eclipse: 10:01:53 No sub-builds to iterate on 10:01:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 10:01:53 10:01:53 retrieve: 10:01:53 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 10:01:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 10:01:56 10:01:56 prepare: 10:01:56 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 10:01:57 10:01:57 release-clients: 10:01:57 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-ab249f4f38-ice36-b406.zip 10:02:04 10:02:04 release-zip: 10:02:04 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-ab249f4f38-ice36-b406.zip 10:02:17 10:02:17 BUILD SUCCESSFUL 10:02:17 Total time: 1 minute 17 seconds 10:02:18 ++ '[' -d .git ']' 10:02:18 ++ python3 ./build.py release-src 10:02:18 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 10:02:18 10:02:18 release-src-git: 10:02:18 Releasing openmicroscopy-5.6.3-552-ab249f4f38-ice36-b406 10:02:20 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-ab249f4f38-ice36-b406.zip 10:02:20 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-ab249f4f38-ice36-b406-base.zip 10:02:21 10:02:21 BUILD SUCCESSFUL 10:02:21 Total time: 3 seconds 10:02:21 ++ echo BUILD_NUMBER=406 10:02:21 ++ echo OMERO_BRANCH=merge_ci 10:02:21 ++ git_info 10:02:21 +++ git rev-parse HEAD 10:02:21 ++ HEAD=ab249f4f3891c7216a1b899d9359c25158a80ade 10:02:21 ++ git log --max-count=1 ab249f4f3891c7216a1b899d9359c25158a80ade 10:02:21 ++ env 10:02:21 ++ sort 10:02:21 Archiving artifacts 10:02:50 Finished: SUCCESS