17:24:25 Started by upstream project "Trigger" build number 486 17:24:25 originally caused by: 17:24:25 Started by user devspace 17:24:25 Restarted from build #485, stage OMERO Jars 17:24:25 Running as SYSTEM 17:24:25 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 17:24:25 The recommended git tool is: NONE 17:24:25 No credentials specified 17:24:25 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 17:24:25 Fetching changes from the remote Git repository 17:24:25 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 17:24:25 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 17:24:25 > git --version # timeout=10 17:24:25 > git --version # 'git version 2.43.5' 17:24:25 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 17:24:27 > git rev-parse origin/merge_ci^{commit} # timeout=10 17:24:27 Checking out Revision 8af22b1ca384e6a4da8c828cf83de91e2b80c88f (origin/merge_ci) 17:24:27 > git config core.sparsecheckout # timeout=10 17:24:27 > git checkout -f 8af22b1ca384e6a4da8c828cf83de91e2b80c88f # timeout=10 17:24:27 Commit message: "Add version.properties to etc/omero.properties" 17:24:27 > git rev-list --no-walk 393fd5256d687311e5d9cbd36a2cda42349184c1 # timeout=10 17:24:27 Cleaning workspace 17:24:27 > git rev-parse --verify HEAD # timeout=10 17:24:27 Resetting working tree 17:24:27 > git reset --hard # timeout=10 17:24:27 > git clean -fdx # timeout=10 17:24:28 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 412 17:24:28 [OMERO-build] $ /bin/bash -xe /tmp/jenkins15875608613183734238.sh 17:24:28 + mv omero-scripts/dist/omero_scripts-5.9.1.dev0.tar.gz . 17:24:28 + cd src 17:24:28 + export OMERO_BRANCH=merge_ci 17:24:28 + OMERO_BRANCH=merge_ci 17:24:28 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 17:24:28 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 17:24:28 + source /home/omero/settings.env 17:24:28 ++ OMERO_DB_HOST=pg 17:24:28 ++ OMERO_DB_USER=postgres 17:24:28 ++ OMERO_DB_PASS= 17:24:28 ++ OMERO_ROOT_PASS=omero 17:24:28 ++ OMERO_DATA_DIR=/OMERO 17:24:28 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 17:24:28 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 17:24:32 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 17:24:32 Collecting zeroc-ice==3.6.5 17:24:33 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 17:24:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 19.6 MB/s eta 0:00:00 17:24:35 Installing collected packages: zeroc-ice 17:24:36 Successfully installed zeroc-ice-3.6.5 17:24:36 17:24:36 [notice] A new release of pip available: 22.3.1 -> 25.1.1 17:24:36 [notice] To update, run: python3.11 -m pip install --upgrade pip 17:24:36 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 17:24:36 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 17:24:36 Collecting setuptools<66 17:24:36 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 17:24:37 Collecting omero-py 17:24:37 Using cached omero_py-5.20.0-py3-none-any.whl (2.8 MB) 17:24:37 Collecting urllib3<2 17:24:37 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 17:24:37 Collecting appdirs 17:24:37 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 17:24:37 Collecting future 17:24:37 Using cached future-1.0.0-py3-none-any.whl (491 kB) 17:24:37 Collecting numpy<3 17:24:37 Using cached numpy-2.2.6-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (16.8 MB) 17:24:38 Collecting Pillow>=10.0.0 17:24:38 Using cached pillow-11.2.1-cp311-cp311-manylinux_2_28_x86_64.whl (4.6 MB) 17:24:39 Collecting PyYAML 17:24:39 Using cached PyYAML-6.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (762 kB) 17:24:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 17:24:39 Collecting requests 17:24:39 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 17:24:39 Collecting portalocker 17:24:39 Using cached portalocker-3.1.1-py3-none-any.whl (19 kB) 17:24:39 Collecting charset-normalizer<4,>=2 17:24:39 Using cached charset_normalizer-3.4.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (147 kB) 17:24:39 Collecting idna<4,>=2.5 17:24:39 Using cached idna-3.10-py3-none-any.whl (70 kB) 17:24:39 Collecting certifi>=2017.4.17 17:24:39 Using cached certifi-2025.4.26-py3-none-any.whl (159 kB) 17:24:39 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset-normalizer, certifi, requests, omero-py 17:24:39 Attempting uninstall: setuptools 17:24:39 Found existing installation: setuptools 65.5.1 17:24:40 Uninstalling setuptools-65.5.1: 17:24:40 Successfully uninstalled setuptools-65.5.1 17:24:45 Successfully installed Pillow-11.2.1 PyYAML-6.0.2 appdirs-1.4.4 certifi-2025.4.26 charset-normalizer-3.4.2 future-1.0.0 idna-3.10 numpy-2.2.6 omero-py-5.20.0 portalocker-3.1.1 requests-2.32.3 setuptools-65.7.0 urllib3-1.26.20 17:24:45 17:24:45 [notice] A new release of pip available: 22.3.1 -> 25.1.1 17:24:45 [notice] To update, run: python3.11 -m pip install --upgrade pip 17:24:45 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 17:24:45 ++ deactivate nondestructive 17:24:45 ++ '[' -n '' ']' 17:24:45 ++ '[' -n '' ']' 17:24:45 ++ hash -r 17:24:45 ++ '[' -n '' ']' 17:24:45 ++ unset VIRTUAL_ENV 17:24:45 ++ unset VIRTUAL_ENV_PROMPT 17:24:45 ++ '[' '!' nondestructive = nondestructive ']' 17:24:45 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 17:24:45 ++ export VIRTUAL_ENV 17:24:45 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:24:45 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 17:24:45 ++ export PATH 17:24:45 ++ '[' -n '' ']' 17:24:45 ++ '[' -z '' ']' 17:24:45 ++ _OLD_VIRTUAL_PS1= 17:24:45 ++ PS1='(omero-virtualenv) ' 17:24:45 ++ export PS1 17:24:45 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 17:24:45 ++ export VIRTUAL_ENV_PROMPT 17:24:45 ++ hash -r 17:24:45 + source docs/hudson/OMERO.sh 17:24:45 ++ set -e 17:24:45 ++ set -u 17:24:45 ++ set -x 17:24:45 ++ source docs/hudson/functions.sh 17:24:45 ++ echo Building merge_ci 17:24:45 Building merge_ci 17:24:45 ++ python3 ./build.py build-dev release-all 17:24:46 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 17:24:46 17:24:46 check-ivy: 17:24:46 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 17:24:46 Created dir: /home/omero/workspace/OMERO-build/src/target 17:24:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:24:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:24:47 17:24:47 build-scons: 17:24:47 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 17:24:47 No sub-builds to iterate on 17:24:47 Entering /home/omero/workspace/OMERO-build/src/components/tools... 17:24:47 17:24:47 buildlist: 17:24:47 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:24:47 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:24:47 17:24:47 clean: 17:24:47 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:24:48 17:24:48 python-clean: 17:24:48 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:24:48 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:24:48 warnings.warn( 17:24:48 running clean 17:24:48 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 17:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:24:48 17:24:48 python-clean: 17:24:48 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:24:48 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:24:48 warnings.warn( 17:24:48 running clean 17:24:48 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 17:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:24:48 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:24:49 17:24:49 python-clean: 17:24:49 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 17:24:49 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-552-8af22b1ca3-ice36-b420') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 17:24:49 warnings.warn( 17:24:49 running clean 17:24:49 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 17:24:49 Deleting directory /home/omero/workspace/OMERO-build/src/target 17:24:49 17:24:49 build-scons: 17:24:49 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 17:24:49 17:24:49 build: 17:24:49 No sub-builds to iterate on 17:24:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:24:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:24:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:24:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:24:49 17:24:49 tools-init: 17:24:49 no-op 17:24:49 17:24:49 retrieve: 17:24:49 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:24:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:24:50 WARNING: An illegal reflective access operation has occurred 17:24:50 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 17:24:50 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 17:24:50 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 17:24:50 WARNING: All illegal access operations will be denied in a future release 17:25:34 17:25:34 prepare: 17:25:34 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:25:34 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 17:25:34 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 17:25:34 17:25:34 pre-compile: 17:25:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:25:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:25:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:25:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:25:34 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 17:25:34 17:25:34 compile: 17:25:34 no-op 17:25:34 17:25:34 package: 17:25:34 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 17:25:35 17:25:35 install: 17:25:35 :: delivering :: omero#omero_client;working@db631b687d0c :: 5.6.3-552-8af22b1ca3-ice36-b420 :: integration :: Mon May 19 17:24:49 UTC 2025 17:25:35 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 17:25:35 :: publishing :: omero#omero_client 17:25:35 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8af22b1ca3-ice36-b420/omero_client-5.6.3-552-8af22b1ca3-ice36-b420.jar 17:25:35 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-552-8af22b1ca3-ice36-b420/omero_client-5.6.3-552-8af22b1ca3-ice36-b420.xml 17:25:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:25:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:25:35 17:25:35 retrieve: 17:25:35 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:25:35 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:25:36 Entering /home/omero/workspace/OMERO-build/src/components/tools... 17:25:36 17:25:36 dist: 17:25:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 17:25:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 17:25:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 17:25:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 17:25:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 17:25:36 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 17:25:36 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 17:25:36 Entering /home/omero/workspace/OMERO-build/src/components/tests... 17:25:36 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 17:25:36 17:25:36 copy-licenses: 17:25:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 17:25:36 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 17:25:36 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 17:25:36 17:25:36 copy-history: 17:25:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 17:25:36 17:25:36 copy-etc: 17:25:36 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 17:25:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 17:25:36 17:25:36 copy-sql: 17:25:36 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 17:25:43 17:25:43 copy-server: 17:25:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 17:25:43 17:25:43 copy-client: 17:25:43 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 17:25:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 17:25:44 17:25:44 update-version: 17:25:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 17:25:44 17:25:44 create-workdirs: 17:25:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 17:25:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 17:25:44 17:25:44 copy-luts: 17:25:44 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 17:25:44 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 17:25:45 17:25:45 test-compile: 17:25:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 17:25:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:25:45 17:25:45 testng-init: 17:25:45 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:25:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:25:48 17:25:48,372 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 17:25:48 17:25:48,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - No custom configurators were discovered as a service. 17:25:48 17:25:48,375 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 17:25:48 17:25:48,378 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 17:25:48 17:25:48,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 17:25:48 17:25:48,379 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 17:25:48 17:25:48,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 17:25:48 17:25:48,380 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 17:25:48 17:25:48,381 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 17:25:48 17:25:48,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 17:25:48 17:25:48,382 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 17:25:48 17:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs multiple times on the classpath. 17:25:48 17:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 17:25:48 17:25:48,383 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3065a6ee - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 17:25:48 17:25:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 17:25:48 17:25:48,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 17:25:48 17:25:48,610 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 17:25:48 17:25:48,612 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 17:25:48 17:25:48,612 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - Please move "immediateFlush" property into the enclosing appender. 17:25:48 17:25:48,674 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7d2fc711 - Setting the "immediateFlush" property of the enclosing appender to true 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 17:25:48 17:25:48,675 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 17:25:48 17:25:48,676 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@a741f59 - End of configuration. 17:25:48 17:25:48,678 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@232fc6a6 - Registering current configuration as safe fallback point 17:25:48 17:25:48,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3ae2721b - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 297 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 17:25:48 17:25:48 lifecycle.test-compile: 17:25:48 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:25:48 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 17:25:49 warning: [options] bootstrap class path not set in conjunction with -source 8 17:25:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:50 import omero.grid.RawAccessRequest; 17:25:50 ^ 17:25:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:50 import omero.grid.RawAccessRequest; 17:25:50 ^ 17:25:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:50 import omero.grid.RawAccessRequest; 17:25:50 ^ 17:25:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:50 import omero.model.ImportJob; 17:25:50 ^ 17:25:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 17:25:50 import omero.model.ImportJobI; 17:25:50 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 17:25:51 IObject link = (IObject) linkClass.newInstance(); 17:25:51 ^ 17:25:51 where T is a type-variable: 17:25:51 T extends Object declared in class Class 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 17:25:51 T copy = (T) obj.getClass().newInstance(); 17:25:51 ^ 17:25:51 where T is a type-variable: 17:25:51 T extends Object declared in class Class 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:51 RawAccessRequest raw = new RawAccessRequest(); 17:25:51 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:51 RawAccessRequest raw = new RawAccessRequest(); 17:25:51 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:25:51 raw.repoUuid = legacy.root().getHash().getValue(); 17:25:51 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 17:25:51 raw.command = "rm"; 17:25:51 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 17:25:51 raw.args = Arrays.asList(path); 17:25:51 ^ 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 17:25:51 final IObject link = linkClass.newInstance(); 17:25:51 ^ 17:25:51 where T is a type-variable: 17:25:51 T extends Object declared in class Class 17:25:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 17:25:51 originalLink.setChild(annotationClass.newInstance()); 17:25:51 ^ 17:25:51 where T is a type-variable: 17:25:51 T extends Object declared in class Class 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 RoiResult r = svc.findByImage(id, new RoiOptions()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:52 final RawAccessRequest request = new RawAccessRequest(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:52 final RawAccessRequest request = new RawAccessRequest(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:25:52 request.repoUuid = repo.root().getHash().getValue(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 17:25:52 request.command = "exists"; 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 17:25:52 request.args = Collections.singletonList(dirPath); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:52 final RawAccessRequest request = new RawAccessRequest(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 17:25:52 final RawAccessRequest request = new RawAccessRequest(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 17:25:52 request.repoUuid = repo.root().getHash().getValue(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 17:25:52 request.command = "exists"; 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 17:25:52 request.args = Collections.singletonList(dirName); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:52 final ImportJob importJob = new ImportJobI(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 17:25:52 final ImportJob importJob = new ImportJobI(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 17:25:52 importJob.setImageName(omero.rtypes.rstring(name)); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 17:25:52 importJob.setImageDescription(omero.rtypes.rstring(desc)); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:52 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 17:25:52 final String savedName = sent.getImageName().getValue().toString(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 17:25:52 final String savedDesc = sent.getImageDescription().getValue().toString(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 17:25:52 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 17:25:52 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 17:25:52 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 RoiResult r = svc.findByImage(image.getId().getValue(), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 17:25:52 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 17:25:52 table = svc.getTable(f.getId().getValue()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 RoiResult r = svc.findByImage(image.getId().getValue(), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 17:25:52 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 17:25:52 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 17:25:52 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 17:25:52 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 17:25:52 svc.getShapeStatsRestricted( 17:25:52 ^ 17:25:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 17:25:52 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 17:25:52 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:25:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:25:53 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:25:53 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:25:53 request.typesToIgnore = Collections.singletonList("Annotation"); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 17:25:53 request.typesToIgnore = Collections.singletonList("Annotation"); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:25:53 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:25:53 p2.setRelatedTo(p1); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:25:53 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:25:53 pixels1.setRelatedTo(pixels2); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:25:53 Pixels pixels = pixels1.getRelatedTo(); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:25:53 Assert.assertNull(pixels1.getRelatedTo()); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 17:25:53 pixels1.setRelatedTo(pixels2); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:25:53 Pixels pixels = pixels1.getRelatedTo(); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 17:25:53 Assert.assertNull(pixels1.getRelatedTo()); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:53 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 17:25:53 ^ 17:25:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 17:25:53 l = svc.getRoiMeasurements(image.getId().getValue(), options); 17:25:53 ^ 17:25:53 Note: Some input files use unchecked or unsafe operations. 17:25:53 Note: Recompile with -Xlint:unchecked for details. 17:25:53 88 warnings 17:25:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1683933248.tmp 17:25:53 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 17:25:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:25:53 :: delivering :: omero#OmeroJava-test;working@db631b687d0c :: 5.6.3-552-8af22b1ca3-ice36-b420 :: integration :: Mon May 19 17:25:45 UTC 2025 17:25:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 17:25:53 :: publishing :: omero#OmeroJava-test 17:25:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8af22b1ca3-ice36-b420.jar 17:25:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-552-8af22b1ca3-ice36-b420.xml 17:25:53 17:25:53 build-eclipse: 17:25:53 No sub-builds to iterate on 17:25:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 17:25:54 17:25:54 retrieve: 17:25:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 17:25:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 17:25:58 17:25:58 prepare: 17:25:58 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 17:25:59 17:25:59 release-clients: 17:25:59 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-552-8af22b1ca3-ice36-b420.zip 17:26:04 17:26:04 release-zip: 17:26:04 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-552-8af22b1ca3-ice36-b420.zip 17:26:15 17:26:15 BUILD SUCCESSFUL 17:26:15 Total time: 1 minute 29 seconds 17:26:15 ++ '[' -d .git ']' 17:26:15 ++ python3 ./build.py release-src 17:26:15 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 17:26:16 17:26:16 release-src-git: 17:26:16 Releasing openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420 17:26:18 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420.zip 17:26:18 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-552-8af22b1ca3-ice36-b420-base.zip 17:26:19 17:26:19 BUILD SUCCESSFUL 17:26:19 Total time: 4 seconds 17:26:19 ++ echo BUILD_NUMBER=420 17:26:19 ++ echo OMERO_BRANCH=merge_ci 17:26:19 ++ git_info 17:26:19 +++ git rev-parse HEAD 17:26:19 ++ HEAD=8af22b1ca384e6a4da8c828cf83de91e2b80c88f 17:26:19 ++ git log --max-count=1 8af22b1ca384e6a4da8c828cf83de91e2b80c88f 17:26:19 ++ env 17:26:19 ++ sort 17:26:20 Archiving artifacts 17:26:43 Finished: SUCCESS