00:36:58 Started by upstream project "Trigger" build number 654 00:36:58 originally caused by: 00:36:58 Started by timer 00:36:58 Running as SYSTEM 00:36:58 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 00:36:58 The recommended git tool is: NONE 00:36:58 No credentials specified 00:36:58 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 00:36:58 Fetching changes from the remote Git repository 00:36:58 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 00:36:58 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 00:36:58 > git --version # timeout=10 00:36:58 > git --version # 'git version 2.43.5' 00:36:58 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 00:36:58 > git rev-parse origin/merge_ci^{commit} # timeout=10 00:36:58 Checking out Revision f5eff9c05d88e4d9f052e13cde9c2ba369b612e2 (origin/merge_ci) 00:36:58 > git config core.sparsecheckout # timeout=10 00:36:58 > git checkout -f f5eff9c05d88e4d9f052e13cde9c2ba369b612e2 # timeout=10 00:36:58 Commit message: "Add version.properties to etc/omero.properties" 00:36:58 > git rev-list --no-walk f863afabcc67e780dda1298b2a394ebd99f4b962 # timeout=10 00:36:58 Cleaning workspace 00:36:58 > git rev-parse --verify HEAD # timeout=10 00:36:58 Resetting working tree 00:36:58 > git reset --hard # timeout=10 00:36:58 > git clean -fdx # timeout=10 00:36:59 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 547 00:36:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins4429167133190930260.sh 00:36:59 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 00:36:59 + cd src 00:36:59 + export OMERO_BRANCH=merge_ci 00:36:59 + OMERO_BRANCH=merge_ci 00:36:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 00:36:59 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 00:36:59 + source /home/omero/settings.env 00:36:59 ++ OMERO_DB_HOST=pg 00:36:59 ++ OMERO_DB_USER=postgres 00:36:59 ++ OMERO_DB_PASS= 00:36:59 ++ OMERO_ROOT_PASS=omero 00:36:59 ++ OMERO_DATA_DIR=/OMERO 00:36:59 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:36:59 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 00:37:02 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:37:03 Collecting zeroc-ice==3.6.5 00:37:03 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:37:05 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.3 MB/s eta 0:00:00 00:37:05 Installing collected packages: zeroc-ice 00:37:06 Successfully installed zeroc-ice-3.6.5 00:37:06 00:37:06 [notice] A new release of pip available: 22.3.1 -> 25.2 00:37:06 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:37:06 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 00:37:07 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 00:37:07 Collecting setuptools<66 00:37:07 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 00:37:07 Collecting omero-py 00:37:07 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB) 00:37:07 Collecting appdirs 00:37:07 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:37:07 Collecting future 00:37:07 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:37:08 Collecting numpy<3 00:37:08 Downloading numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:37:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 8.4 MB/s eta 0:00:00 00:37:10 Collecting Pillow>=10.0.0 00:37:10 Downloading pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:37:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 22.9 MB/s eta 0:00:00 00:37:10 Collecting PyYAML 00:37:10 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:37:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:37:10 Collecting requests 00:37:10 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:37:10 Collecting portalocker 00:37:10 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:37:11 Collecting charset_normalizer<4,>=2 00:37:11 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:37:11 Collecting idna<4,>=2.5 00:37:11 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:37:11 Collecting urllib3<3,>=1.21.1 00:37:11 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 00:37:11 Collecting certifi>=2017.4.17 00:37:11 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB) 00:37:11 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 00:37:11 Attempting uninstall: setuptools 00:37:11 Found existing installation: setuptools 65.5.1 00:37:11 Uninstalling setuptools-65.5.1: 00:37:11 Successfully uninstalled setuptools-65.5.1 00:37:16 Successfully installed Pillow-12.0.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2025.10.5 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.3.4 omero-py-5.21.2 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.5.0 00:37:16 00:37:16 [notice] A new release of pip available: 22.3.1 -> 25.2 00:37:16 [notice] To update, run: python3.11 -m pip install --upgrade pip 00:37:17 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 00:37:17 ++ deactivate nondestructive 00:37:17 ++ '[' -n '' ']' 00:37:17 ++ '[' -n '' ']' 00:37:17 ++ hash -r 00:37:17 ++ '[' -n '' ']' 00:37:17 ++ unset VIRTUAL_ENV 00:37:17 ++ unset VIRTUAL_ENV_PROMPT 00:37:17 ++ '[' '!' nondestructive = nondestructive ']' 00:37:17 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 00:37:17 ++ export VIRTUAL_ENV 00:37:17 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:37:17 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:37:17 ++ export PATH 00:37:17 ++ '[' -n '' ']' 00:37:17 ++ '[' -z '' ']' 00:37:17 ++ _OLD_VIRTUAL_PS1= 00:37:17 ++ PS1='(omero-virtualenv) ' 00:37:17 ++ export PS1 00:37:17 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 00:37:17 ++ export VIRTUAL_ENV_PROMPT 00:37:17 ++ hash -r 00:37:17 + source docs/hudson/OMERO.sh 00:37:17 ++ set -e 00:37:17 ++ set -u 00:37:17 ++ set -x 00:37:17 ++ source docs/hudson/functions.sh 00:37:17 ++ echo Building merge_ci 00:37:17 Building merge_ci 00:37:17 ++ python3 ./build.py build-dev release-all 00:37:17 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:37:17 00:37:17 check-ivy: 00:37:17 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 00:37:17 Created dir: /home/omero/workspace/OMERO-build/src/target 00:37:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:37:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:18 00:37:18 build-scons: 00:37:18 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:37:18 No sub-builds to iterate on 00:37:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:37:18 00:37:18 buildlist: 00:37:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:37:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:18 00:37:18 clean: 00:37:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:19 00:37:19 python-clean: 00:37:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-f5eff9c05d-ice36-b550') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:19 warnings.warn( 00:37:19 running clean 00:37:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 00:37:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:37:19 00:37:19 python-clean: 00:37:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-f5eff9c05d-ice36-b550') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:19 warnings.warn( 00:37:19 running clean 00:37:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 00:37:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:37:19 00:37:19 python-clean: 00:37:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 00:37:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-576-f5eff9c05d-ice36-b550') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 00:37:19 warnings.warn( 00:37:19 running clean 00:37:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 00:37:19 Deleting directory /home/omero/workspace/OMERO-build/src/target 00:37:20 00:37:20 build-scons: 00:37:20 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 00:37:20 00:37:20 build: 00:37:20 No sub-builds to iterate on 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:37:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:37:20 00:37:20 tools-init: 00:37:20 no-op 00:37:20 00:37:20 retrieve: 00:37:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:37:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:37:20 WARNING: An illegal reflective access operation has occurred 00:37:20 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 00:37:20 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 00:37:20 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 00:37:20 WARNING: All illegal access operations will be denied in a future release 00:38:06 00:38:06 prepare: 00:38:06 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:38:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 00:38:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 00:38:06 00:38:06 pre-compile: 00:38:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:38:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:38:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:38:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:38:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 00:38:07 00:38:07 compile: 00:38:07 no-op 00:38:07 00:38:07 package: 00:38:07 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 00:38:07 00:38:07 install: 00:38:07 :: delivering :: omero#omero_client;working@52bf34d160e3 :: 5.6.3-576-f5eff9c05d-ice36-b550 :: integration :: Thu Oct 16 00:37:20 UTC 2025 00:38:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 00:38:07 :: publishing :: omero#omero_client 00:38:07 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-f5eff9c05d-ice36-b550/omero_client-5.6.3-576-f5eff9c05d-ice36-b550.jar 00:38:07 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-576-f5eff9c05d-ice36-b550/omero_client-5.6.3-576-f5eff9c05d-ice36-b550.xml 00:38:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:38:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:38:08 00:38:08 retrieve: 00:38:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:38:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:38:08 Entering /home/omero/workspace/OMERO-build/src/components/tools... 00:38:08 00:38:08 dist: 00:38:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 00:38:08 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 00:38:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:38:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 00:38:08 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 00:38:08 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 00:38:08 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 00:38:08 Entering /home/omero/workspace/OMERO-build/src/components/tests... 00:38:08 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:38:08 00:38:08 copy-licenses: 00:38:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:38:08 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 00:38:08 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 00:38:08 00:38:08 copy-history: 00:38:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 00:38:08 00:38:08 copy-etc: 00:38:08 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 00:38:08 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 00:38:08 00:38:08 copy-sql: 00:38:08 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 00:38:17 00:38:17 copy-server: 00:38:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 00:38:17 00:38:17 copy-client: 00:38:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 00:38:18 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 00:38:18 00:38:18 update-version: 00:38:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 00:38:18 00:38:18 create-workdirs: 00:38:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 00:38:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 00:38:18 00:38:18 copy-luts: 00:38:18 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:38:18 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 00:38:18 00:38:18 test-compile: 00:38:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 00:38:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:38:19 00:38:19 testng-init: 00:38:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:38:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:38:21 00:38:21,523 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 00:38:21 00:38:21,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - No custom configurators were discovered as a service. 00:38:21 00:38:21,525 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 00:38:21 00:38:21,528 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 00:38:21 00:38:21,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 00:38:21 00:38:21,529 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 00:38:21 00:38:21,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 00:38:21 00:38:21,530 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 00:38:21 00:38:21,532 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 00:38:21 00:38:21,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 00:38:21 00:38:21,532 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:38:21 00:38:21,533 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d947adf - Resource [logback.xml] occurs multiple times on the classpath. 00:38:21 00:38:21,533 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d947adf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 00:38:21 00:38:21,533 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@3d947adf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 00:38:21 00:38:21,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 00:38:21 00:38:21,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 00:38:21 00:38:21,751 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 00:38:21 00:38:21,752 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@668f0ee - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 00:38:21 00:38:21,752 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@668f0ee - Please move "immediateFlush" property into the enclosing appender. 00:38:21 00:38:21,812 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@668f0ee - Setting the "immediateFlush" property of the enclosing appender to true 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 00:38:21 00:38:21,813 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 00:38:21 00:38:21,814 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@430344bf - End of configuration. 00:38:21 00:38:21,816 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@14fed6c7 - Registering current configuration as safe fallback point 00:38:21 00:38:21,817 |-INFO in ch.qos.logback.classic.util.ContextInitializer@c2b7028 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 00:38:21 00:38:21 lifecycle.test-compile: 00:38:21 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:38:21 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 00:38:22 warning: [options] bootstrap class path not set in conjunction with -source 8 00:38:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:23 import omero.grid.RawAccessRequest; 00:38:23 ^ 00:38:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:23 import omero.grid.RawAccessRequest; 00:38:23 ^ 00:38:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:23 import omero.grid.RawAccessRequest; 00:38:23 ^ 00:38:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:23 import omero.model.ImportJob; 00:38:23 ^ 00:38:23 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:38:23 import omero.model.ImportJobI; 00:38:23 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 00:38:24 IObject link = (IObject) linkClass.newInstance(); 00:38:24 ^ 00:38:24 where T is a type-variable: 00:38:24 T extends Object declared in class Class 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 00:38:24 T copy = (T) obj.getClass().newInstance(); 00:38:24 ^ 00:38:24 where T is a type-variable: 00:38:24 T extends Object declared in class Class 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:24 RawAccessRequest raw = new RawAccessRequest(); 00:38:24 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:24 RawAccessRequest raw = new RawAccessRequest(); 00:38:24 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:38:24 raw.repoUuid = legacy.root().getHash().getValue(); 00:38:24 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 00:38:24 raw.command = "rm"; 00:38:24 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 00:38:24 raw.args = Arrays.asList(path); 00:38:24 ^ 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 00:38:24 final IObject link = linkClass.newInstance(); 00:38:24 ^ 00:38:24 where T is a type-variable: 00:38:24 T extends Object declared in class Class 00:38:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 00:38:24 originalLink.setChild(annotationClass.newInstance()); 00:38:24 ^ 00:38:24 where T is a type-variable: 00:38:24 T extends Object declared in class Class 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 RoiResult r = svc.findByImage(id, new RoiOptions()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:25 final RawAccessRequest request = new RawAccessRequest(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:25 final RawAccessRequest request = new RawAccessRequest(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:38:25 request.repoUuid = repo.root().getHash().getValue(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 00:38:25 request.command = "exists"; 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 00:38:25 request.args = Collections.singletonList(dirPath); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:25 final RawAccessRequest request = new RawAccessRequest(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 00:38:25 final RawAccessRequest request = new RawAccessRequest(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 00:38:25 request.repoUuid = repo.root().getHash().getValue(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 00:38:25 request.command = "exists"; 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 00:38:25 request.args = Collections.singletonList(dirName); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:25 final ImportJob importJob = new ImportJobI(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 00:38:25 final ImportJob importJob = new ImportJobI(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 00:38:25 importJob.setImageName(omero.rtypes.rstring(name)); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 00:38:25 importJob.setImageDescription(omero.rtypes.rstring(desc)); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:25 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:25 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:38:25 final String savedName = sent.getImageName().getValue().toString(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:38:25 final String savedDesc = sent.getImageDescription().getValue().toString(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:25 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 00:38:25 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 00:38:25 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 00:38:25 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 RoiResult r = svc.findByImage(image.getId().getValue(), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 00:38:25 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 00:38:25 table = svc.getTable(f.getId().getValue()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 RoiResult r = svc.findByImage(image.getId().getValue(), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 00:38:25 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:38:25 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 00:38:25 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 00:38:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 00:38:25 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:38:25 svc.getShapeStatsRestricted( 00:38:25 ^ 00:38:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 00:38:25 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 00:38:25 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:38:26 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:38:26 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:38:26 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:38:26 request.typesToIgnore = Collections.singletonList("Annotation"); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 00:38:26 request.typesToIgnore = Collections.singletonList("Annotation"); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:38:26 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:38:26 p2.setRelatedTo(p1); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:38:26 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:38:26 pixels1.setRelatedTo(pixels2); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:38:26 Pixels pixels = pixels1.getRelatedTo(); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:38:26 Assert.assertNull(pixels1.getRelatedTo()); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 00:38:26 pixels1.setRelatedTo(pixels2); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:38:26 Pixels pixels = pixels1.getRelatedTo(); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 00:38:26 Assert.assertNull(pixels1.getRelatedTo()); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:26 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:26 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 00:38:26 ^ 00:38:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 00:38:26 l = svc.getRoiMeasurements(image.getId().getValue(), options); 00:38:26 ^ 00:38:26 Note: Some input files use unchecked or unsafe operations. 00:38:26 Note: Recompile with -Xlint:unchecked for details. 00:38:26 88 warnings 00:38:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1265680098.tmp 00:38:26 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 00:38:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:38:26 :: delivering :: omero#OmeroJava-test;working@52bf34d160e3 :: 5.6.3-576-f5eff9c05d-ice36-b550 :: integration :: Thu Oct 16 00:38:18 UTC 2025 00:38:26 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 00:38:26 :: publishing :: omero#OmeroJava-test 00:38:26 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-f5eff9c05d-ice36-b550.jar 00:38:26 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-576-f5eff9c05d-ice36-b550.xml 00:38:26 00:38:26 build-eclipse: 00:38:26 No sub-builds to iterate on 00:38:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 00:38:26 00:38:26 retrieve: 00:38:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 00:38:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 00:38:28 00:38:28 prepare: 00:38:28 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 00:38:30 00:38:30 release-clients: 00:38:30 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-576-f5eff9c05d-ice36-b550.zip 00:38:35 00:38:35 release-zip: 00:38:35 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-576-f5eff9c05d-ice36-b550.zip 00:38:45 00:38:45 BUILD SUCCESSFUL 00:38:45 Total time: 1 minute 27 seconds 00:38:45 ++ '[' -d .git ']' 00:38:45 ++ python3 ./build.py release-src 00:38:45 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 00:38:45 00:38:45 release-src-git: 00:38:45 Releasing openmicroscopy-5.6.3-576-f5eff9c05d-ice36-b550 00:38:47 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-f5eff9c05d-ice36-b550.zip 00:38:47 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-576-f5eff9c05d-ice36-b550-base.zip 00:38:48 00:38:48 BUILD SUCCESSFUL 00:38:48 Total time: 3 seconds 00:38:48 ++ echo BUILD_NUMBER=550 00:38:48 ++ echo OMERO_BRANCH=merge_ci 00:38:48 ++ git_info 00:38:48 +++ git rev-parse HEAD 00:38:48 ++ HEAD=f5eff9c05d88e4d9f052e13cde9c2ba369b612e2 00:38:48 ++ git log --max-count=1 f5eff9c05d88e4d9f052e13cde9c2ba369b612e2 00:38:48 ++ env 00:38:48 ++ sort 00:38:48 Archiving artifacts 00:39:12 Finished: SUCCESS