08:54:36 Started by upstream project "Trigger" build number 505 08:54:36 originally caused by: 08:54:36 Started by user devspace 08:54:36 Restarted from build #504, stage OMERO Python 08:54:36 Running as SYSTEM 08:54:36 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-push 08:54:36 The recommended git tool is: NONE 08:54:36 No credentials specified 08:54:36 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-push/src/.git # timeout=10 08:54:36 Fetching changes from the remote Git repository 08:54:36 > git config remote.origin.url https://github.com/ome/openmicroscopy.git # timeout=10 08:54:36 Fetching upstream changes from https://github.com/ome/openmicroscopy.git 08:54:36 > git --version # timeout=10 08:54:36 > git --version # 'git version 2.43.5' 08:54:36 > git fetch --tags --force --progress -- https://github.com/ome/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 08:54:36 > git rev-parse origin/develop^{commit} # timeout=10 08:54:36 Checking out Revision 27b69ac69788e990c72b3ee0d5ff896a123abf84 (origin/develop) 08:54:36 > git config core.sparsecheckout # timeout=10 08:54:36 > git checkout -f 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=30 08:54:36 Commit message: "Merge pull request #6427 from dominikl/5_6_15_changelog_2" 08:54:36 > git rev-list --no-walk 27b69ac69788e990c72b3ee0d5ff896a123abf84 # timeout=10 08:54:36 Cleaning workspace 08:54:36 > git rev-parse --verify HEAD # timeout=10 08:54:36 Resetting working tree 08:54:36 > git reset --hard # timeout=10 08:54:36 > git clean -fdx # timeout=10 08:54:36 Copied 1 artifact from "OMERO-python-superbuild-build" build number 428 08:54:36 [OMERO-push] $ /bin/bash -xe /tmp/jenkins11539903882007086295.sh 08:54:36 + python3.11 -mvenv venv 08:54:38 + source /home/omero/workspace/OMERO-push/venv/bin/activate 08:54:38 ++ deactivate nondestructive 08:54:38 ++ '[' -n '' ']' 08:54:38 ++ '[' -n '' ']' 08:54:38 ++ hash -r 08:54:38 ++ '[' -n '' ']' 08:54:38 ++ unset VIRTUAL_ENV 08:54:38 ++ unset VIRTUAL_ENV_PROMPT 08:54:38 ++ '[' '!' nondestructive = nondestructive ']' 08:54:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-push/venv 08:54:38 ++ export VIRTUAL_ENV 08:54:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:54:38 ++ PATH=/home/omero/workspace/OMERO-push/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:54:38 ++ export PATH 08:54:38 ++ '[' -n '' ']' 08:54:38 ++ '[' -z '' ']' 08:54:38 ++ _OLD_VIRTUAL_PS1= 08:54:38 ++ PS1='(venv) ' 08:54:38 ++ export PS1 08:54:38 ++ VIRTUAL_ENV_PROMPT='(venv) ' 08:54:38 ++ export VIRTUAL_ENV_PROMPT 08:54:38 ++ hash -r 08:54:38 + pip install -U pip 08:54:38 Requirement already satisfied: pip in ./venv/lib64/python3.11/site-packages (25.1.1) 08:54:38 + pip install -U scc 08:54:39 Requirement already satisfied: scc in ./venv/lib64/python3.11/site-packages (0.20.0) 08:54:39 Requirement already satisfied: PyGithub>=1.54 in ./venv/lib64/python3.11/site-packages (from scc) (2.6.1) 08:54:39 Requirement already satisfied: PyYAML>=5.1 in ./venv/lib64/python3.11/site-packages (from scc) (6.0.2) 08:54:39 Requirement already satisfied: future in ./venv/lib64/python3.11/site-packages (from scc) (1.0.0) 08:54:39 Requirement already satisfied: ruamel.yaml in ./venv/lib64/python3.11/site-packages (from scc) (0.18.10) 08:54:39 Requirement already satisfied: ruamel.yaml.jinja2 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.7) 08:54:39 Requirement already satisfied: six in ./venv/lib64/python3.11/site-packages (from scc) (1.17.0) 08:54:39 Requirement already satisfied: urllib3<2 in ./venv/lib64/python3.11/site-packages (from scc) (1.26.20) 08:54:39 Requirement already satisfied: yaclifw<0.3,>=0.2.0 in ./venv/lib64/python3.11/site-packages (from scc) (0.2.0) 08:54:39 Requirement already satisfied: pynacl>=1.4.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.5.0) 08:54:39 Requirement already satisfied: requests>=2.14.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (2.32.3) 08:54:39 Requirement already satisfied: pyjwt>=2.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.10.1) 08:54:39 Requirement already satisfied: typing-extensions>=4.0.0 in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (4.13.0) 08:54:39 Requirement already satisfied: Deprecated in ./venv/lib64/python3.11/site-packages (from PyGithub>=1.54->scc) (1.2.18) 08:54:39 Requirement already satisfied: cryptography>=3.4.0 in ./venv/lib64/python3.11/site-packages (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (44.0.2) 08:54:39 Requirement already satisfied: cffi>=1.12 in ./venv/lib64/python3.11/site-packages (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (1.17.1) 08:54:39 Requirement already satisfied: pycparser in ./venv/lib64/python3.11/site-packages (from cffi>=1.12->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) (2.22) 08:54:39 Requirement already satisfied: charset-normalizer<4,>=2 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.4.1) 08:54:39 Requirement already satisfied: idna<4,>=2.5 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (3.10) 08:54:39 Requirement already satisfied: certifi>=2017.4.17 in ./venv/lib64/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2025.1.31) 08:54:39 Requirement already satisfied: wrapt<2,>=1.10 in ./venv/lib64/python3.11/site-packages (from Deprecated->PyGithub>=1.54->scc) (1.17.2) 08:54:39 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in ./venv/lib64/python3.11/site-packages (from ruamel.yaml->scc) (0.2.12) 08:54:39 + test -e src 08:54:39 + cd src 08:54:39 ++ git config github.user 08:54:39 + user=snoopycrimecop 08:54:39 + scc merge develop --no-ask --reset --shallow -S success-only 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Merging Pull Request(s) based on develop 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 08:54:43 2025-06-04 08:54:43,192 [ scc.merge] INFO Excluding Pull Request(s) without successful status 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO Repository: ome/openmicroscopy 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO Excluded PRs: 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6423 jburel 'Use \d' (status: failure) 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6319 dominikl 'Add integration test for joining session' (exclude comment) 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6212 jburel 'add test to import images' (exclude comment) 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6086 manics 'Alternative JSON configuration system for OMERO.web' (label: exclude) 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO Already up to date. 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO Merged PRs: 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6309 jburel 'add try block' 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6353 jburel 'remove dependencies' 08:55:03 2025-06-04 08:55:03,467 [ scc.merge] INFO - PR 6428 sbesson 'Remove MaxPermSize flag in the build system' 08:55:03 2025-06-04 08:55:03,468 [ scc.merge] INFO - PR 6429 sbesson 'Update integration tests to be compliant with pytest 8.4.0' 08:55:03 2025-06-04 08:55:03,468 [ scc.merge] INFO 08:55:03 + cp etc/omero.properties etc/omero.properties.bak 08:55:03 + rm etc/omero.properties 08:55:03 + touch etc/omero.properties 08:55:03 ++ sed -n '/Internal dependencies/=' etc/omero.properties.bak 08:55:03 + ne=249 08:55:03 ++ sed -n 1,249p etc/omero.properties.bak 08:55:03 + line='## 08:55:03 ## omero.properties 08:55:03 ## ---------------- 08:55:03 ## 08:55:03 ## DO NOT EDIT! 08:55:03 ## 08:55:03 ## 08:55:03 ## Any of these properties can be altered by using `omero config`. MODIFYING 08:55:03 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 08:55:03 ## at compile time! 08:55:03 ## 08:55:03 ## For an overview of these properties, see 08:55:03 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 08:55:03 ## 08:55:03 ## Properties marked with "DEVELOPMENT" should not be used in production. 08:55:03 08:55:03 # Comma separated list of Ice transports available to clients. The default 08:55:03 # value ("ssl,tcp") instructs Ice to open the ports specified by the 08:55:03 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 08:55:03 # will prevent all non-encrypted connections to the OMERO server. 08:55:03 # 08:55:03 # Additionally, there are two experimental values for using websockets: 08:55:03 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 08:55:03 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 08:55:03 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 08:55:03 # 08:55:03 # Note: When using websockets behind a web server like nginx, additional 08:55:03 # configuration may be needed. 08:55:03 omero.client.icetransports=ssl,tcp 08:55:03 08:55:03 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 08:55:03 # server 08:55:03 omero.ports.prefix= 08:55:03 08:55:03 # The Glacier2 SSL port number to use 08:55:03 omero.ports.ssl=4064 08:55:03 08:55:03 # The Glacier2 TCP port number to use (unencrypted) 08:55:03 omero.ports.tcp=4063 08:55:03 08:55:03 # The Glacier2 WSS port number to use 08:55:03 omero.ports.wss=4066 08:55:03 08:55:03 # The Glacier2 WS port number to use (unencrypted) 08:55:03 omero.ports.ws=4065 08:55:03 08:55:03 # The IceGrid registry port number to use 08:55:03 omero.ports.registry=4061 08:55:03 08:55:03 ############################################# 08:55:03 ## JVM configuration 08:55:03 ## 08:55:03 ## Note: changes to the omero.jvmcfg properties 08:55:03 ## will *not* be reflected in OMERO.server 08:55:03 ## since they are defined in OMERO.py. 08:55:03 ############################################# 08:55:03 ## (For documentation only) 08:55:03 # Memory strategy which will be used by default. 08:55:03 # Options include: percent, manual 08:55:03 omero.jvmcfg.strategy=percent 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Explicit value for the `-Xmx` argument, e.g. 08:55:03 # "1g" 08:55:03 omero.jvmcfg.heap_size= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Explicit value for the MaxPermSize argument 08:55:03 # to the JVM, e.g. "500M". Ignored for Java8+ 08:55:03 omero.jvmcfg.perm_gen= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Toggles on or off heap dumps on OOMs. Default is "off". 08:55:03 # The special value "tmp" will create the heap dumps in 08:55:03 # your temp directory. 08:55:03 omero.jvmcfg.heap_dump= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Used only by the percent strategy. An integer between 0 08:55:03 # and 100 which is the percent of active memory that will 08:55:03 # be used by the service. 08:55:03 omero.jvmcfg.percent= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Contains other parameters which should be passed to the 08:55:03 # JVM. The value of "append" is treated as if it were on 08:55:03 # the command line so will be separated on whitespace. 08:55:03 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 08:55:03 # results in two new arguments. 08:55:03 # Note that when using `config set` from the command line 08:55:03 # one may need to give a prior `--` option to prevent a value 08:55:03 # starting with `-` from already being parsed as an option, 08:55:03 # and values may need quoting to prevent whitespace or other 08:55:03 # significant characters from being interpreted prematurely. 08:55:03 08:55:03 omero.jvmcfg.append= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Manual override of the total system memory that 08:55:03 # OMERO will *think* is present on the local OS (MB). 08:55:03 # If unset, an attempt will be made to detect the actual 08:55:03 # amount: first by using the Python library `psutil` and 08:55:03 # if that is not installed, by running a Java tool. If 08:55:03 # neither works, 4.0GB is assumed. 08:55:03 omero.jvmcfg.system_memory= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Suggestion for strategies as to the minimum memory 08:55:03 # that they will use for calculating JVM settings (MB). 08:55:03 omero.jvmcfg.min_system_memory=3414 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Suggestion for strategies as to the maximum memory 08:55:03 # that they will use for calculating JVM settings (MB). 08:55:03 omero.jvmcfg.max_system_memory=48000 08:55:03 08:55:03 08:55:03 ############################################# 08:55:03 ## Logging properties 08:55:03 ## 08:55:03 ## Note: changes to the default omero.logging values in 08:55:03 ## this file will *not* be reflected in OMERO.server 08:55:03 ## since they are defined in OMERO.py 08:55:03 ############################################# 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Relative server directory where the log files should be stored. 08:55:03 omero.logging.directory=var/log/ 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Whether the server log files should be rotated at a certain time 08:55:03 # interval. If true, log files will be rolled over at midnight. 08:55:03 # Otherwise, log files will be rolled over at a predetermined size, 08:55:03 # see omero.logging.logsize for more information. 08:55:03 omero.logging.timedlog=false 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # If omero.logging.timedlog is false or unset, specifies the 08:55:03 # maximum size of the server log files in bytes above which a 08:55:03 # new log file should be created. 08:55:03 omero.logging.logsize=5000000 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # If omero.logging.timedlog is false or unset, specifies the 08:55:03 # number of old server log files that should be kept. Old log 08:55:03 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 08:55:03 omero.logging.lognum=9 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Specifies the threshold for the Python servers log files. Logging messages 08:55:03 # which are less severe than this value will be ignored. For a list of 08:55:03 # available values, see https://docs.python.org/3/library/logging.html#levels. 08:55:03 omero.logging.level=20 08:55:03 08:55:03 ############################################# 08:55:03 ## Ice overrides 08:55:03 ## 08:55:03 ## Though not used directly by OMERO, a number 08:55:03 ## of properties prefixed with "Ice.*" will 08:55:03 ## alter the behavior of the OMERO runtime 08:55:03 ## by configuring the Ice communicators. For a 08:55:03 ## full listing see: 08:55:03 ## 08:55:03 ## http://doc.zeroc.com/display/Ice/Property+Reference 08:55:03 ## For more information see 08:55:03 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 08:55:03 ############################################# 08:55:03 08:55:03 # Disable IPv6 by setting to 0. Only needed in 08:55:03 # certain situations. 08:55:03 Ice.IPv6=1 08:55:03 08:55:03 # Glacier2Template IceSSL defaults and overrides, 08:55:03 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 08:55:03 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 08:55:03 # update the corresponding IceSSL. property. 08:55:03 omero.glacier2.IceSSL= 08:55:03 08:55:03 # Glacier2Template SSL maximum allowed protocol (mac bug) 08:55:03 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 08:55:03 # Glacier2Template SSL allowed cipher suites 08:55:03 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 08:55:03 # Glacier2Template SSL verification requirements 08:55:03 omero.glacier2.IceSSL.VerifyPeer=0 08:55:03 # Glacier2Template SSL allowed protocols 08:55:03 omero.glacier2.IceSSL.Protocols=tls1 08:55:03 08:55:03 # Override the default set of OMERO services. 08:55:03 # For example, to run OMERO.server with Blitz and Tables only 08:55:03 # (i.e. disable Processor, DropBox, Indexer, PixelData) 08:55:03 # set this to ``master:Blitz-0,Tables-0``. 08:55:03 # Also use this to distribute OMERO services across multiple nodes, 08:55:03 # for example: 08:55:03 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 08:55:03 # See 08:55:03 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 08:55:03 omero.server.nodedescriptors= 08:55:03 08:55:03 ############################################# 08:55:03 ## Darwin (OS X) specific defaults for templated configuration files only. 08:55:03 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 08:55:03 ## file. 08:55:03 ## Do not set these properties in ``omero config``, instead set the original 08:55:03 ## ``xxx.yyy`` property 08:55:03 ############################################# 08:55:03 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Name of the Python module to use when starting the Tables service 08:55:03 omero.tables.module=runTables 08:55:03 08:55:03 ############################################# 08:55:03 ## Server product name for release artifacts 08:55:03 ############################################# 08:55:03 product.name=OMERO.server 08:55:03 08:55:03 ############################################# 08:55:03 ### Properties below this marker are ignored by 08:55:03 ### omero.install.config_parser.PropertyParser 08:55:03 ### END 08:55:03 08:55:03 ############################################# 08:55:03 ## Library versions 08:55:03 ############################################# 08:55:03 ## 08:55:03 versions.findbugs=1.2.1 08:55:03 versions.ice36=3.6.5 08:55:03 versions.ice36_lib=36 08:55:03 ## internal 08:55:03 versions.omeroshares36=3.6.3 08:55:03 versions.omeromock36=3.6.3 08:55:03 versions.icedb36=3.6.3 08:55:03 versions.ipython=1.2.1 08:55:03 08:55:03 versions.janino=2.5.10 08:55:03 08:55:03 versions.reportng=1.1.1 08:55:03 08:55:03 versions.testng=7.5 08:55:03 versions.velocity=1.4 08:55:03 08:55:03 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 08:55:03 versions.omero-scripts-url=${versions.omero-pypi} 08:55:03 08:55:03 ### 08:55:03 ### Appended Values 08:55:03 ### 08:55:03 08:55:03 ## Internal dependencies' 08:55:03 + echo '## 08:55:03 ## omero.properties 08:55:03 ## ---------------- 08:55:03 ## 08:55:03 ## DO NOT EDIT! 08:55:03 ## 08:55:03 ## 08:55:03 ## Any of these properties can be altered by using `omero config`. MODIFYING 08:55:03 ## THIS FILE DOES NOT ALTER SERVER BEHAVIOR. It solely defines the defaults 08:55:03 ## at compile time! 08:55:03 ## 08:55:03 ## For an overview of these properties, see 08:55:03 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/config.html 08:55:03 ## 08:55:03 ## Properties marked with "DEVELOPMENT" should not be used in production. 08:55:03 08:55:03 # Comma separated list of Ice transports available to clients. The default 08:55:03 # value ("ssl,tcp") instructs Ice to open the ports specified by the 08:55:03 # omero.ports.ssl and omero.ports.tcp properties. Restricting to "ssl" 08:55:03 # will prevent all non-encrypted connections to the OMERO server. 08:55:03 # 08:55:03 # Additionally, there are two experimental values for using websockets: 08:55:03 # "ws" and "wss" for unencrypted and encrypted, respectively. The ports 08:55:03 # that are opened are controlled by the omero.ports.ws and omero.ports.wss 08:55:03 # properties. To enable all possible protocols use: "ssl,tcp,wss,ws". 08:55:03 # 08:55:03 # Note: When using websockets behind a web server like nginx, additional 08:55:03 # configuration may be needed. 08:55:03 omero.client.icetransports=ssl,tcp 08:55:03 08:55:03 # The prefix to apply to all port numbers (SSL, TCP, registry) used by the 08:55:03 # server 08:55:03 omero.ports.prefix= 08:55:03 08:55:03 # The Glacier2 SSL port number to use 08:55:03 omero.ports.ssl=4064 08:55:03 08:55:03 # The Glacier2 TCP port number to use (unencrypted) 08:55:03 omero.ports.tcp=4063 08:55:03 08:55:03 # The Glacier2 WSS port number to use 08:55:03 omero.ports.wss=4066 08:55:03 08:55:03 # The Glacier2 WS port number to use (unencrypted) 08:55:03 omero.ports.ws=4065 08:55:03 08:55:03 # The IceGrid registry port number to use 08:55:03 omero.ports.registry=4061 08:55:03 08:55:03 ############################################# 08:55:03 ## JVM configuration 08:55:03 ## 08:55:03 ## Note: changes to the omero.jvmcfg properties 08:55:03 ## will *not* be reflected in OMERO.server 08:55:03 ## since they are defined in OMERO.py. 08:55:03 ############################################# 08:55:03 ## (For documentation only) 08:55:03 # Memory strategy which will be used by default. 08:55:03 # Options include: percent, manual 08:55:03 omero.jvmcfg.strategy=percent 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Explicit value for the `-Xmx` argument, e.g. 08:55:03 # "1g" 08:55:03 omero.jvmcfg.heap_size= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Explicit value for the MaxPermSize argument 08:55:03 # to the JVM, e.g. "500M". Ignored for Java8+ 08:55:03 omero.jvmcfg.perm_gen= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Toggles on or off heap dumps on OOMs. Default is "off". 08:55:03 # The special value "tmp" will create the heap dumps in 08:55:03 # your temp directory. 08:55:03 omero.jvmcfg.heap_dump= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Used only by the percent strategy. An integer between 0 08:55:03 # and 100 which is the percent of active memory that will 08:55:03 # be used by the service. 08:55:03 omero.jvmcfg.percent= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Contains other parameters which should be passed to the 08:55:03 # JVM. The value of "append" is treated as if it were on 08:55:03 # the command line so will be separated on whitespace. 08:55:03 # For example, '\''-XX:-PrintGC -XX:+UseCompressedOops'\'' would 08:55:03 # results in two new arguments. 08:55:03 # Note that when using `config set` from the command line 08:55:03 # one may need to give a prior `--` option to prevent a value 08:55:03 # starting with `-` from already being parsed as an option, 08:55:03 # and values may need quoting to prevent whitespace or other 08:55:03 # significant characters from being interpreted prematurely. 08:55:03 08:55:03 omero.jvmcfg.append= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Manual override of the total system memory that 08:55:03 # OMERO will *think* is present on the local OS (MB). 08:55:03 # If unset, an attempt will be made to detect the actual 08:55:03 # amount: first by using the Python library `psutil` and 08:55:03 # if that is not installed, by running a Java tool. If 08:55:03 # neither works, 4.0GB is assumed. 08:55:03 omero.jvmcfg.system_memory= 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Suggestion for strategies as to the minimum memory 08:55:03 # that they will use for calculating JVM settings (MB). 08:55:03 omero.jvmcfg.min_system_memory=3414 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Suggestion for strategies as to the maximum memory 08:55:03 # that they will use for calculating JVM settings (MB). 08:55:03 omero.jvmcfg.max_system_memory=48000 08:55:03 08:55:03 08:55:03 ############################################# 08:55:03 ## Logging properties 08:55:03 ## 08:55:03 ## Note: changes to the default omero.logging values in 08:55:03 ## this file will *not* be reflected in OMERO.server 08:55:03 ## since they are defined in OMERO.py 08:55:03 ############################################# 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Relative server directory where the log files should be stored. 08:55:03 omero.logging.directory=var/log/ 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Whether the server log files should be rotated at a certain time 08:55:03 # interval. If true, log files will be rolled over at midnight. 08:55:03 # Otherwise, log files will be rolled over at a predetermined size, 08:55:03 # see omero.logging.logsize for more information. 08:55:03 omero.logging.timedlog=false 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # If omero.logging.timedlog is false or unset, specifies the 08:55:03 # maximum size of the server log files in bytes above which a 08:55:03 # new log file should be created. 08:55:03 omero.logging.logsize=5000000 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # If omero.logging.timedlog is false or unset, specifies the 08:55:03 # number of old server log files that should be kept. Old log 08:55:03 # files will be saved by appending the extensions '\''.1'\'', '\''.2'\'' etc. 08:55:03 omero.logging.lognum=9 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Specifies the threshold for the Python servers log files. Logging messages 08:55:03 # which are less severe than this value will be ignored. For a list of 08:55:03 # available values, see https://docs.python.org/3/library/logging.html#levels. 08:55:03 omero.logging.level=20 08:55:03 08:55:03 ############################################# 08:55:03 ## Ice overrides 08:55:03 ## 08:55:03 ## Though not used directly by OMERO, a number 08:55:03 ## of properties prefixed with "Ice.*" will 08:55:03 ## alter the behavior of the OMERO runtime 08:55:03 ## by configuring the Ice communicators. For a 08:55:03 ## full listing see: 08:55:03 ## 08:55:03 ## http://doc.zeroc.com/display/Ice/Property+Reference 08:55:03 ## For more information see 08:55:03 ## https://docs.openmicroscopy.org/latest/omero/sysadmins/troubleshooting.html#server-fails-to-start 08:55:03 ############################################# 08:55:03 08:55:03 # Disable IPv6 by setting to 0. Only needed in 08:55:03 # certain situations. 08:55:03 Ice.IPv6=1 08:55:03 08:55:03 # Glacier2Template IceSSL defaults and overrides, 08:55:03 # see https://doc.zeroc.com/ice/3.6/property-reference/icessl. 08:55:03 # Any property beginning ``omero.glacier2.IceSSL.`` will be used to 08:55:03 # update the corresponding IceSSL. property. 08:55:03 omero.glacier2.IceSSL= 08:55:03 08:55:03 # Glacier2Template SSL maximum allowed protocol (mac bug) 08:55:03 omero.glacier2.IceSSL.ProtocolVersionMax=tls1_1 08:55:03 # Glacier2Template SSL allowed cipher suites 08:55:03 omero.glacier2.IceSSL.Ciphers=ADH:!LOW:!MD5:!EXP:!3DES:@STRENGTH 08:55:03 # Glacier2Template SSL verification requirements 08:55:03 omero.glacier2.IceSSL.VerifyPeer=0 08:55:03 # Glacier2Template SSL allowed protocols 08:55:03 omero.glacier2.IceSSL.Protocols=tls1 08:55:03 08:55:03 # Override the default set of OMERO services. 08:55:03 # For example, to run OMERO.server with Blitz and Tables only 08:55:03 # (i.e. disable Processor, DropBox, Indexer, PixelData) 08:55:03 # set this to ``master:Blitz-0,Tables-0``. 08:55:03 # Also use this to distribute OMERO services across multiple nodes, 08:55:03 # for example: 08:55:03 # ``master:Blitz-0,Tables-0 worker1:Processor-0``. 08:55:03 # See 08:55:03 # https://docs.openmicroscopy.org/omero/latest/sysadmins/grid.html#deployment-examples 08:55:03 omero.server.nodedescriptors= 08:55:03 08:55:03 ############################################# 08:55:03 ## Darwin (OS X) specific defaults for templated configuration files only. 08:55:03 ## ``_xxx.yyy.darwin`` properties will override xxx.yyy properties in this 08:55:03 ## file. 08:55:03 ## Do not set these properties in ``omero config``, instead set the original 08:55:03 ## ``xxx.yyy`` property 08:55:03 ############################################# 08:55:03 _omero.glacier2.IceSSL.Ciphers.darwin=(AES) 08:55:03 08:55:03 ## (For documentation only) 08:55:03 # Name of the Python module to use when starting the Tables service 08:55:03 omero.tables.module=runTables 08:55:03 08:55:03 ############################################# 08:55:03 ## Server product name for release artifacts 08:55:03 ############################################# 08:55:03 product.name=OMERO.server 08:55:03 08:55:03 ############################################# 08:55:03 ### Properties below this marker are ignored by 08:55:03 ### omero.install.config_parser.PropertyParser 08:55:03 ### END 08:55:03 08:55:03 ############################################# 08:55:03 ## Library versions 08:55:03 ############################################# 08:55:03 ## 08:55:03 versions.findbugs=1.2.1 08:55:03 versions.ice36=3.6.5 08:55:03 versions.ice36_lib=36 08:55:03 ## internal 08:55:03 versions.omeroshares36=3.6.3 08:55:03 versions.omeromock36=3.6.3 08:55:03 versions.icedb36=3.6.3 08:55:03 versions.ipython=1.2.1 08:55:03 08:55:03 versions.janino=2.5.10 08:55:03 08:55:03 versions.reportng=1.1.1 08:55:03 08:55:03 versions.testng=7.5 08:55:03 versions.velocity=1.4 08:55:03 08:55:03 versions.omero-pypi=https://pypi.io/packages/source/o/PACKAGE 08:55:03 versions.omero-scripts-url=${versions.omero-pypi} 08:55:03 08:55:03 ### 08:55:03 ### Appended Values 08:55:03 ### 08:55:03 08:55:03 ## Internal dependencies' 08:55:03 + echo versions.omero-pypi=https://merge-ci.openmicroscopy.org/jenkins//job/OMERO-python-superbuild-build/lastSuccessfulBuild/artifact/PACKAGE/dist/ 08:55:03 + echo versions.omero-github=https://github.com/snoopycrimecop/PACKAGE/archive 08:55:03 + echo versions.scripts-prefix= 08:55:03 + echo versions.scripts=merge_ci 08:55:03 + cat /home/omero/workspace/OMERO-push/version.properties 08:55:03 + git commit -a -m 'Add version.properties to etc/omero.properties' 08:55:03 [detached HEAD 0adf5ee26b] Add version.properties to etc/omero.properties 08:55:03 1 file changed, 46 insertions(+), 7 deletions(-) 08:55:03 + git push -f git@github.com:snoopycrimecop/openmicroscopy.git HEAD:refs/heads/merge_ci 08:55:04 To github.com:snoopycrimecop/openmicroscopy.git 08:55:04 + 11b87d054f...0adf5ee26b HEAD -> merge_ci (forced update) 08:55:04 Finished: SUCCESS