08:50:01 Started by upstream project "Trigger" build number 647 08:50:01 originally caused by: 08:50:01 Started by user devspace 08:50:01 Running as SYSTEM 08:50:01 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 08:50:01 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1267417193223341237.sh 08:50:01 + source /home/settings.env 08:50:01 ++ OMERO_DB_HOST=pg 08:50:01 ++ OMERO_DB_USER=postgres 08:50:01 ++ OMERO_DB_PASS= 08:50:01 ++ OMERO_ROOT_PASS=omero 08:50:01 ++ OMERO_DATA_DIR=/OMERO 08:50:01 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:50:01 + OMERO_DB_NAME=OMERO-server 08:50:01 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 08:50:01 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 08:50:01 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 08:50:01 + OMERO_DATA_DIR=/home/omero/omero-server-data 08:50:01 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 08:50:01 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 08:50:01 ++ deactivate nondestructive 08:50:01 ++ '[' -n '' ']' 08:50:01 ++ '[' -n '' ']' 08:50:01 ++ hash -r 08:50:01 ++ '[' -n '' ']' 08:50:01 ++ unset VIRTUAL_ENV 08:50:01 ++ unset VIRTUAL_ENV_PROMPT 08:50:01 ++ '[' '!' nondestructive = nondestructive ']' 08:50:01 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 08:50:01 ++ export VIRTUAL_ENV 08:50:01 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:50:01 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:50:01 ++ export PATH 08:50:01 ++ '[' -n '' ']' 08:50:01 ++ '[' -z '' ']' 08:50:01 ++ _OLD_VIRTUAL_PS1= 08:50:01 ++ PS1='(.venv3) ' 08:50:01 ++ export PS1 08:50:01 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 08:50:01 ++ export VIRTUAL_ENV_PROMPT 08:50:01 ++ hash -r 08:50:01 + omero admin stop 08:50:02 Waiting on shutdown. Use CTRL-C to exit 08:50:02 .+ sleep 5 08:50:18 + deactivate 08:50:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 08:50:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:50:18 + export PATH 08:50:18 + unset _OLD_VIRTUAL_PATH 08:50:18 + '[' -n '' ']' 08:50:18 + hash -r 08:50:18 + '[' -n '' ']' 08:50:18 + unset VIRTUAL_ENV 08:50:18 + unset VIRTUAL_ENV_PROMPT 08:50:18 + '[' '!' '' = nondestructive ']' 08:50:18 + unset -f deactivate 08:50:18 + rm -rf /home/omero/workspace/OMERO-server/.venv3 08:50:18 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 08:50:22 + '[' false = true ']' 08:50:22 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 08:50:22 Skipping PURGE_DATA:CleanDbAndRepo 08:50:22 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 08:50:24 Copied 1 artifact from "OMERO-build" build number 543 08:50:24 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 540 08:50:24 Copied 2 artifacts from "OMERO-build-build" build number 574 08:50:24 Copied 1 artifact from "OMERO-zarr-pixel-buffer-build" build number 75 08:50:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins15893385392896450589.sh 08:50:24 + source /home/settings.env 08:50:24 ++ OMERO_DB_HOST=pg 08:50:24 ++ OMERO_DB_USER=postgres 08:50:24 ++ OMERO_DB_PASS= 08:50:24 ++ OMERO_ROOT_PASS=omero 08:50:24 ++ OMERO_DATA_DIR=/OMERO 08:50:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 08:50:24 + OMERO_DB_NAME=OMERO-server 08:50:24 + OMERO_DATA_DIR=/home/omero/omero-server-data 08:50:24 + mkdir -p /home/omero/omero-server-data 08:50:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 08:50:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 08:50:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 08:50:24 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 08:50:24 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 08:50:24 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 08:50:24 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 08:50:24 ++ ls OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip 08:50:24 + ZIP=OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip 08:50:24 + '[' '!' -z '' ']' 08:50:24 + DIST=OMERO.server-5.6.3-576-6a1d635416-ice36-b543 08:50:24 + unzip OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip 08:50:24 Archive: OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/blitz/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/grid/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/profiles/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/error/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/grid/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/janelia/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/matplotlib/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/ncsa_paledit/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/seaborn/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/luts/wcif/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/analysis_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/annotation_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/export_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/figure_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/import_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/scripts/omero/util_scripts/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/server/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/share/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/share/licenses/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/misc/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__1/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__10/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__11/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__2/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__3/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__4/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__5/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__6/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__7/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__8/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__9/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__4/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__5/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__6/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__7/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.1__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.2__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.2__0/t/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.3__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.4__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.0__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.1__1/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.2__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__1/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__2/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__3/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/ 08:50:24 creating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/var/ 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/LICENSE.txt 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/backup.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/blitz/mail-senders.example 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/blitz/mail-server.example 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/build.properties 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/env.bat 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/env.sh 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/hibernate.properties 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/ice.config 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/logback-cli.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/logback-indexing-cli.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/logback-indexing.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/logback.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/mime.types 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/node1.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/node2.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/omero.properties 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/profiles/psql 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/rollover.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/Windows.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/error/maintainance.html 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/grid/README 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/grid/default.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/grid/templates.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/grid/windefault.xml 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/ice.config 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/internal.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/master.cfg 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/templates/robot.template 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/etc/testdropbox.config 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/history.rst 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/OMEZarrReader.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/accessors-smart.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/activation.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aggdesigner-algorithm.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aircompressor.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/antlr.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aopalliance.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/apiguardian-api.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/asm.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/avatica-core.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/avatica-metrics.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aws-java-sdk-core.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aws-java-sdk-kms.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/aws-java-sdk-s3.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/base.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-anim.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-awt-util.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-bridge.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-codec.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-constants.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-css.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-dom.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-ext.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-gvt.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-i18n.jar 08:50:24 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/lib/client/batik-parser.jar 08:50:24 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OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/misc/enums.py 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__1/OMERO3__7.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__10/OMERO3A__9.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__11/OMERO3A__10.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__11/OMERO3A__5.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__2/OMERO3A__1.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__3/OMERO3A__2.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__3/OMERO3__5.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__4/OMERO3A__3.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__4/OMERO3__5.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__5/OMERO3A__4.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__6/OMERO3A__5.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__7/OMERO3A__6.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__8/OMERO3A__6.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3A__9/OMERO3A__8.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__4/OMERO3__1.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__5/OMERO3__4.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__6/OMERO3__5.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO3__7/OMERO3__6.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.1__0/OMERO4__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO4__0/OMERO3A__11.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/psql-footer.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/psql-header.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/schema.sql 08:50:26 inflating: OMERO.server-5.6.3-576-6a1d635416-ice36-b543/sql/psql/OMERO5.4__0/views.sql 08:50:26 + rm -f OMERO.server-5.6.3-576-6a1d635416-ice36-b543.zip 08:50:26 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-6a1d635416-ice36-b543 /home/omero/workspace/OMERO-server/OMERO.server 08:50:26 ++ ls omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 08:50:26 + JAR=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 08:50:26 ++ basename omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 08:50:26 + JAR_NAME=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 08:50:26 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 08:50:26 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 08:50:26 --2025-10-09 08:50:26-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 08:50:26 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ... 08:50:26 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 08:50:26 HTTP request sent, awaiting response... 200 OK 08:50:26 Length: 889211 (868K) [application/java-archive] 08:50:26 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 08:50:26 08:50:26 0K .......... .......... .......... .......... .......... 5% 34.5M 0s 08:50:26 50K .......... .......... .......... .......... .......... 11% 5.31M 0s 08:50:26 100K .......... .......... .......... .......... .......... 17% 6.10M 0s 08:50:26 150K .......... .......... .......... .......... .......... 23% 37.1M 0s 08:50:26 200K .......... .......... .......... .......... .......... 28% 248M 0s 08:50:26 250K .......... .......... .......... .......... .......... 34% 115M 0s 08:50:26 300K .......... .......... .......... .......... .......... 40% 112M 0s 08:50:26 350K .......... .......... .......... .......... .......... 46% 6.24M 0s 08:50:26 400K .......... .......... .......... .......... .......... 51% 110M 0s 08:50:26 450K .......... .......... .......... .......... .......... 57% 136M 0s 08:50:26 500K .......... .......... .......... .......... .......... 63% 299M 0s 08:50:26 550K .......... .......... .......... .......... .......... 69% 85.2M 0s 08:50:26 600K .......... .......... .......... .......... .......... 74% 6.40M 0s 08:50:26 650K .......... .......... .......... .......... .......... 80% 95.9M 0s 08:50:26 700K .......... .......... .......... .......... .......... 86% 132M 0s 08:50:26 750K .......... .......... .......... .......... .......... 92% 238M 0s 08:50:26 800K .......... .......... .......... .......... .......... 97% 84.4M 0s 08:50:26 850K .......... ........ 100% 369M=0.04s 08:50:26 08:50:26 2025-10-09 08:50:26 (21.4 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] 08:50:26 08:50:26 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 08:50:26 --2025-10-09 08:50:26-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 08:50:26 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ... 08:50:26 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 08:50:26 HTTP request sent, awaiting response... 200 OK 08:50:27 Length: 73309 (72K) [application/java-archive] 08:50:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 08:50:27 08:50:27 0K .......... .......... .......... .......... .......... 69% 29.8M 0s 08:50:27 50K .......... .......... . 100% 2.40M=0.01s 08:50:27 08:50:27 2025-10-09 08:50:27 (6.71 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] 08:50:27 08:50:27 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 08:50:27 --2025-10-09 08:50:27-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 08:50:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ... 08:50:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 08:50:27 HTTP request sent, awaiting response... 200 OK 08:50:27 Length: 63303 (62K) [application/java-archive] 08:50:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 08:50:27 08:50:27 0K .......... .......... .......... .......... .......... 80% 31.1M 0s 08:50:27 50K .......... . 100% 189M=0.002s 08:50:27 08:50:27 2025-10-09 08:50:27 (37.0 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] 08:50:27 08:50:27 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 08:50:27 --2025-10-09 08:50:27-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 08:50:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:130c, ... 08:50:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected. 08:50:27 HTTP request sent, awaiting response... 200 OK 08:50:27 Length: 1271272 (1.2M) [application/java-archive] 08:50:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 08:50:27 08:50:27 0K .......... .......... .......... .......... .......... 4% 33.8M 0s 08:50:27 50K .......... .......... .......... .......... .......... 8% 5.32M 0s 08:50:27 100K .......... .......... .......... .......... .......... 12% 102M 0s 08:50:27 150K .......... .......... .......... .......... .......... 16% 5.81M 0s 08:50:27 200K .......... .......... .......... .......... .......... 20% 211M 0s 08:50:27 250K .......... .......... .......... .......... .......... 24% 96.4M 0s 08:50:27 300K .......... .......... .......... .......... .......... 28% 126M 0s 08:50:27 350K .......... .......... .......... .......... .......... 32% 88.0M 0s 08:50:27 400K .......... .......... .......... .......... .......... 36% 5.95M 0s 08:50:27 450K .......... .......... .......... .......... .......... 40% 196M 0s 08:50:27 500K .......... .......... .......... .......... .......... 44% 97.1M 0s 08:50:27 550K .......... .......... .......... .......... .......... 48% 99.9M 0s 08:50:27 600K .......... .......... .......... .......... .......... 52% 105M 0s 08:50:27 650K .......... .......... .......... .......... .......... 56% 6.59M 0s 08:50:27 700K .......... .......... .......... .......... .......... 60% 151M 0s 08:50:27 750K .......... .......... .......... .......... .......... 64% 117M 0s 08:50:27 800K .......... .......... .......... .......... .......... 68% 99.4M 0s 08:50:27 850K .......... .......... .......... .......... .......... 72% 8.02M 0s 08:50:27 900K .......... .......... .......... .......... .......... 76% 23.7M 0s 08:50:27 950K .......... .......... .......... .......... .......... 80% 112M 0s 08:50:27 1000K .......... .......... .......... .......... .......... 84% 214M 0s 08:50:27 1050K .......... .......... .......... .......... .......... 88% 114M 0s 08:50:27 1100K .......... .......... .......... .......... .......... 92% 8.14M 0s 08:50:27 1150K .......... .......... .......... .......... .......... 96% 21.6M 0s 08:50:27 1200K .......... .......... .......... .......... . 100% 268M=0.06s 08:50:27 08:50:27 2025-10-09 08:50:27 (21.1 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] 08:50:27 08:50:27 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 08:50:27 ++ deactivate nondestructive 08:50:27 ++ '[' -n '' ']' 08:50:27 ++ '[' -n '' ']' 08:50:27 ++ hash -r 08:50:27 ++ '[' -n '' ']' 08:50:27 ++ unset VIRTUAL_ENV 08:50:27 ++ unset VIRTUAL_ENV_PROMPT 08:50:27 ++ '[' '!' nondestructive = nondestructive ']' 08:50:27 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 08:50:27 ++ export VIRTUAL_ENV 08:50:27 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:50:27 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:50:27 ++ export PATH 08:50:27 ++ '[' -n '' ']' 08:50:27 ++ '[' -z '' ']' 08:50:27 ++ _OLD_VIRTUAL_PS1= 08:50:27 ++ PS1='(.venv3) ' 08:50:27 ++ export PS1 08:50:27 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 08:50:27 ++ export VIRTUAL_ENV_PROMPT 08:50:27 ++ hash -r 08:50:27 + pip install -U pip 08:50:27 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 08:50:28 Collecting pip 08:50:28 Using cached pip-25.2-py3-none-any.whl (1.8 MB) 08:50:28 Installing collected packages: pip 08:50:28 Attempting uninstall: pip 08:50:28 Found existing installation: pip 22.3.1 08:50:28 Uninstalling pip-22.3.1: 08:50:28 Successfully uninstalled pip-22.3.1 08:50:29 Successfully installed pip-25.2 08:50:29 WARNING: There was an error checking the latest version of pip. 08:50:29 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 08:50:29 Collecting zeroc-ice==3.6.5 08:50:29 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 08:50:31 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.0 MB/s 0:00:01 08:50:31 Installing collected packages: zeroc-ice 08:50:32 Successfully installed zeroc-ice-3.6.5 08:50:32 + pip install markdown 08:50:32 Collecting markdown 08:50:32 Using cached markdown-3.9-py3-none-any.whl.metadata (5.1 kB) 08:50:32 Using cached markdown-3.9-py3-none-any.whl (107 kB) 08:50:32 Installing collected packages: markdown 08:50:32 Successfully installed markdown-3.9 08:50:33 + pip install reportlab 08:50:33 Collecting reportlab 08:50:33 Using cached reportlab-4.4.4-py3-none-any.whl.metadata (1.7 kB) 08:50:33 Collecting pillow>=9.0.0 (from reportlab) 08:50:33 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 08:50:34 Collecting charset-normalizer (from reportlab) 08:50:34 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) 08:50:34 Using cached reportlab-4.4.4-py3-none-any.whl (2.0 MB) 08:50:34 Using cached pillow-11.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.6 MB) 08:50:34 Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) 08:50:34 Installing collected packages: pillow, charset-normalizer, reportlab 08:50:35 08:50:35 Successfully installed charset-normalizer-3.4.3 pillow-11.3.0 reportlab-4.4.4 08:50:35 + pip install pyarrow 08:50:35 Collecting pyarrow 08:50:35 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) 08:50:35 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB) 08:50:35 Installing collected packages: pyarrow 08:50:37 Successfully installed pyarrow-21.0.0 08:50:37 + pip install omego 08:50:37 Collecting omego 08:50:37 Using cached omego-0.7.0-py3-none-any.whl 08:50:37 Collecting future (from omego) 08:50:37 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 08:50:37 Collecting yaclifw>=0.1.1 (from omego) 08:50:37 Using cached yaclifw-0.2.0-py3-none-any.whl 08:50:37 Collecting six (from yaclifw>=0.1.1->omego) 08:50:37 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 08:50:37 Using cached future-1.0.0-py3-none-any.whl (491 kB) 08:50:37 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 08:50:37 Installing collected packages: six, future, yaclifw, omego 08:50:38 08:50:38 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 08:50:38 + pip install tables 08:50:38 Collecting tables 08:50:38 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 08:50:38 Collecting numpy>=1.20.0 (from tables) 08:50:38 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 08:50:38 Collecting numexpr>=2.6.2 (from tables) 08:50:38 Using cached numexpr-2.13.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 08:50:38 Collecting packaging (from tables) 08:50:38 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 08:50:38 Collecting py-cpuinfo (from tables) 08:50:38 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 08:50:39 Collecting blosc2>=2.3.0 (from tables) 08:50:39 Downloading blosc2-3.10.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 08:50:39 Collecting typing-extensions>=4.4.0 (from tables) 08:50:39 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 08:50:39 Collecting ndindex (from blosc2>=2.3.0->tables) 08:50:39 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB) 08:50:39 Collecting msgpack (from blosc2>=2.3.0->tables) 08:50:39 Downloading msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 08:50:39 Collecting platformdirs (from blosc2>=2.3.0->tables) 08:50:39 Downloading platformdirs-4.5.0-py3-none-any.whl.metadata (12 kB) 08:50:39 Collecting requests (from blosc2>=2.3.0->tables) 08:50:39 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 08:50:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.3) 08:50:39 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 08:50:39 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 08:50:39 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 08:50:39 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB) 08:50:39 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 08:50:39 Using cached certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB) 08:50:39 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 08:50:39 Downloading blosc2-3.10.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 08:50:39 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 22.3 MB/s 0:00:00 08:50:39 Using cached numexpr-2.13.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (441 kB) 08:50:39 Using cached numpy-2.3.3-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 08:50:39 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 08:50:39 Downloading msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 08:50:39 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB) 08:50:39 Using cached packaging-25.0-py3-none-any.whl (66 kB) 08:50:39 Downloading platformdirs-4.5.0-py3-none-any.whl (18 kB) 08:50:39 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 08:50:39 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 08:50:39 Using cached idna-3.10-py3-none-any.whl (70 kB) 08:50:39 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 08:50:39 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB) 08:50:40 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 08:50:43 08:50:43 Successfully installed blosc2-3.10.0 certifi-2025.10.5 idna-3.10 msgpack-1.1.2 ndindex-1.10.0 numexpr-2.13.1 numpy-2.3.3 packaging-25.0 platformdirs-4.5.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.5.0 08:50:43 + pip install jinja2 08:50:43 Collecting jinja2 08:50:43 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 08:50:43 Collecting MarkupSafe>=2.0 (from jinja2) 08:50:43 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 08:50:43 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 08:50:43 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 08:50:43 Installing collected packages: MarkupSafe, jinja2 08:50:43 08:50:43 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 08:50:44 + pip install zarr 08:50:44 Collecting zarr 08:50:44 Using cached zarr-3.1.3-py3-none-any.whl.metadata (10 kB) 08:50:44 Collecting donfig>=0.8 (from zarr) 08:50:44 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 08:50:44 Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr) 08:50:44 Using cached numcodecs-0.16.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB) 08:50:44 Requirement already satisfied: numpy>=1.26 in ./.venv3/lib64/python3.11/site-packages (from zarr) (2.3.3) 08:50:44 Requirement already satisfied: packaging>=22.0 in ./.venv3/lib64/python3.11/site-packages (from zarr) (25.0) 08:50:44 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr) (4.15.0) 08:50:44 Collecting pyyaml (from donfig>=0.8->zarr) 08:50:44 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 08:50:44 Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr) 08:50:44 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) 08:50:44 Using cached zarr-3.1.3-py3-none-any.whl (276 kB) 08:50:44 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 08:50:44 Using cached numcodecs-0.16.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB) 08:50:44 Using cached crc32c-2.7.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (53 kB) 08:50:44 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 08:50:44 Installing collected packages: pyyaml, numcodecs, crc32c, donfig, zarr 08:50:45 08:50:45 Successfully installed crc32c-2.7.1 donfig-0.8.1.post1 numcodecs-0.16.3 pyyaml-6.0.3 zarr-3.1.3 08:50:45 + pip install fsspec requests aiohttp s3fs 08:50:45 Collecting fsspec 08:50:45 Using cached fsspec-2025.9.0-py3-none-any.whl.metadata (10 kB) 08:50:45 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (2.32.5) 08:50:46 Collecting aiohttp 08:50:46 Using cached aiohttp-3.13.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 08:50:46 Collecting s3fs 08:50:46 Using cached s3fs-2025.9.0-py3-none-any.whl.metadata (1.4 kB) 08:50:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.4.3) 08:50:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.10) 08:50:46 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests) (2.5.0) 08:50:46 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests) (2025.10.5) 08:50:46 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp) 08:50:46 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) 08:50:46 Collecting aiosignal>=1.4.0 (from aiohttp) 08:50:46 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 08:50:46 Collecting attrs>=17.3.0 (from aiohttp) 08:50:46 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB) 08:50:46 Collecting frozenlist>=1.1.1 (from aiohttp) 08:50:46 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 08:50:46 Collecting multidict<7.0,>=4.5 (from aiohttp) 08:50:46 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 08:50:46 Collecting propcache>=0.2.0 (from aiohttp) 08:50:47 Downloading propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB) 08:50:47 Collecting yarl<2.0,>=1.17.0 (from aiohttp) 08:50:47 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB) 08:50:47 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs) 08:50:47 Using cached aiobotocore-2.24.3-py3-none-any.whl.metadata (25 kB) 08:50:47 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 08:50:47 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB) 08:50:48 Collecting botocore<1.40.46,>=1.40.37 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 08:50:48 Using cached botocore-1.40.45-py3-none-any.whl.metadata (5.7 kB) 08:50:48 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 08:50:48 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 08:50:48 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 08:50:48 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) 08:50:48 Collecting wrapt<2.0.0,>=1.10.10 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 08:50:48 Using cached wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (6.4 kB) 08:50:48 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs) (1.17.0) 08:50:48 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp) (4.15.0) 08:50:48 Using cached fsspec-2025.9.0-py3-none-any.whl (199 kB) 08:50:48 Using cached aiohttp-3.13.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB) 08:50:48 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 08:50:48 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB) 08:50:48 Using cached s3fs-2025.9.0-py3-none-any.whl (30 kB) 08:50:48 Using cached aiobotocore-2.24.3-py3-none-any.whl (85 kB) 08:50:48 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB) 08:50:48 Using cached botocore-1.40.45-py3-none-any.whl (14.1 MB) 08:50:48 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) 08:50:48 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 08:50:48 Using cached wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (82 kB) 08:50:48 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) 08:50:48 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 08:50:48 Using cached attrs-25.4.0-py3-none-any.whl (67 kB) 08:50:48 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 08:50:48 Downloading propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB) 08:50:48 Installing collected packages: wrapt, python-dateutil, propcache, multidict, jmespath, fsspec, frozenlist, attrs, aioitertools, aiohappyeyeballs, yarl, botocore, aiosignal, aiohttp, aiobotocore, s3fs 08:50:49 08:50:49 Successfully installed aiobotocore-2.24.3 aiohappyeyeballs-2.6.1 aiohttp-3.13.0 aioitertools-0.12.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.40.45 frozenlist-1.8.0 fsspec-2025.9.0 jmespath-1.0.1 multidict-6.7.0 propcache-0.4.1 python-dateutil-2.9.0.post0 s3fs-2025.9.0 wrapt-1.17.3 yarl-1.22.0 08:50:49 + pip install omero-py 08:50:50 Collecting omero-py 08:50:50 Using cached omero_py-5.21.2-py3-none-any.whl.metadata (6.5 kB) 08:50:50 Collecting appdirs (from omero-py) 08:50:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 08:50:50 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 08:50:50 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.3) 08:50:50 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (11.3.0) 08:50:50 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.3) 08:50:50 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 08:50:50 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) 08:50:50 Collecting portalocker (from omero-py) 08:50:50 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 08:50:50 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.3) 08:50:50 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.10) 08:50:50 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.5.0) 08:50:50 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.10.5) 08:50:50 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB) 08:50:50 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 08:50:50 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 08:50:50 Installing collected packages: appdirs, portalocker, omero-py 08:50:52 08:50:52 Successfully installed appdirs-1.4.4 omero-py-5.21.2 portalocker-3.2.0 08:50:52 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 08:50:52 Collecting omero-metadata 08:50:52 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-i7aoqe87/omero-metadata_600b33f4deaf415c9f7fad2581a4d958 08:50:52 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-i7aoqe87/omero-metadata_600b33f4deaf415c9f7fad2581a4d958 08:50:53 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 37196ca658b4ae1785fcefe4546f90b4b5866810 08:50:53 Installing build dependencies: started 08:50:54 Installing build dependencies: finished with status 'done' 08:50:54 Getting requirements to build wheel: started 08:50:54 Getting requirements to build wheel: finished with status 'done' 08:50:54 Preparing metadata (pyproject.toml): started 08:50:54 Preparing metadata (pyproject.toml): finished with status 'done' 08:50:54 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.2) 08:50:54 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 08:50:54 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 08:50:55 Collecting pandas (from omero-metadata) 08:50:55 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 08:50:55 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 08:50:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 08:50:55 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.3) 08:50:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (11.3.0) 08:50:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 08:50:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) 08:50:55 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 08:50:55 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 08:50:55 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0) 08:50:55 Collecting pytz>=2020.1 (from pandas->omero-metadata) 08:50:55 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 08:50:56 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 08:50:56 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) 08:50:56 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 08:50:56 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.3) 08:50:56 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 08:50:56 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.5.0) 08:50:56 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.10.5) 08:50:56 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 08:50:56 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 08:50:56 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) 08:50:56 Building wheels for collected packages: omero-metadata 08:50:56 Building wheel for omero-metadata (pyproject.toml): started 08:50:56 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 08:50:56 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=f7521f206a3e6fa502ecd19939ff1b1034eeb89fbe3815b44324b4b04ebff3f4 08:50:56 Stored in directory: /tmp/pip-ephem-wheel-cache-iy1jfcdl/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 08:50:56 Successfully built omero-metadata 08:50:56 Installing collected packages: pytz, tzdata, pandas, omero-metadata 08:51:02 08:51:02 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 pytz-2025.2 tzdata-2025.2 08:51:02 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 08:51:03 Collecting omero-cli-render 08:51:03 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-2rgdv2xb/omero-cli-render_c93dd1ba32144c088c0f918ad2e58d87 08:51:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-2rgdv2xb/omero-cli-render_c93dd1ba32144c088c0f918ad2e58d87 08:51:04 Running command git checkout -b merge_ci --track origin/merge_ci 08:51:04 Switched to a new branch 'merge_ci' 08:51:04 branch 'merge_ci' set up to track 'origin/merge_ci'. 08:51:04 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 498a90b8ccc4f1d02fd0a98d189bf8e13e23390c 08:51:04 Installing build dependencies: started 08:51:05 Installing build dependencies: finished with status 'done' 08:51:05 Getting requirements to build wheel: started 08:51:05 Getting requirements to build wheel: finished with status 'done' 08:51:05 Preparing metadata (pyproject.toml): started 08:51:05 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:05 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 08:51:05 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.2) 08:51:05 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 08:51:05 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 08:51:05 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.3) 08:51:05 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (11.3.0) 08:51:05 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 08:51:05 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) 08:51:05 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 08:51:05 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.3) 08:51:05 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 08:51:05 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.5.0) 08:51:05 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.10.5) 08:51:05 Building wheels for collected packages: omero-cli-render 08:51:05 Building wheel for omero-cli-render (pyproject.toml): started 08:51:06 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 08:51:06 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=fec98bee20e6447c24a559335cb21ac0e347f90dabd3d312adb588589282e4de 08:51:06 Stored in directory: /tmp/pip-ephem-wheel-cache-2pc_yzef/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 08:51:06 Successfully built omero-cli-render 08:51:06 Installing collected packages: omero-cli-render 08:51:06 Successfully installed omero-cli-render-0.8.2.dev0 08:51:06 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 08:51:06 Collecting omero-cli-duplicate 08:51:06 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-ambzffig/omero-cli-duplicate_cc795d7c923c4e9b910321d8c34f583a 08:51:06 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-ambzffig/omero-cli-duplicate_cc795d7c923c4e9b910321d8c34f583a 08:51:07 Running command git checkout -b merge_ci --track origin/merge_ci 08:51:07 Switched to a new branch 'merge_ci' 08:51:07 branch 'merge_ci' set up to track 'origin/merge_ci'. 08:51:07 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 0b64b973c4ea55a369db3c7c8d8135ebccbf4873 08:51:07 Installing build dependencies: started 08:51:08 Installing build dependencies: finished with status 'done' 08:51:08 Getting requirements to build wheel: started 08:51:08 Getting requirements to build wheel: finished with status 'done' 08:51:08 Preparing metadata (pyproject.toml): started 08:51:08 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:08 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.2) 08:51:08 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 08:51:08 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 08:51:08 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.3) 08:51:08 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (11.3.0) 08:51:08 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 08:51:08 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 08:51:08 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) 08:51:08 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 08:51:08 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.3) 08:51:08 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 08:51:08 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.5.0) 08:51:08 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.10.5) 08:51:08 Building wheels for collected packages: omero-cli-duplicate 08:51:09 Building wheel for omero-cli-duplicate (pyproject.toml): started 08:51:09 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 08:51:09 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=c2e027f0038e72a5497376d24b7c8664970c1748d9fabb7497f652a77b4764d6 08:51:09 Stored in directory: /tmp/pip-ephem-wheel-cache-6_plvtdp/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 08:51:09 Successfully built omero-cli-duplicate 08:51:09 Installing collected packages: omero-cli-duplicate 08:51:09 Successfully installed omero-cli-duplicate-0.4.1.dev0 08:51:09 + pip install omero-certificates 08:51:09 Collecting omero-certificates 08:51:09 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 08:51:09 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.2) 08:51:09 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 08:51:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 08:51:09 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.3) 08:51:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (11.3.0) 08:51:09 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 08:51:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 08:51:09 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) 08:51:09 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 08:51:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.3) 08:51:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 08:51:09 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.5.0) 08:51:09 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.10.5) 08:51:09 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 08:51:10 Installing collected packages: omero-certificates 08:51:10 Successfully installed omero-certificates-0.4.0 08:51:10 + for x in *.tar.gz 08:51:10 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 08:51:10 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 08:51:10 Installing build dependencies: started 08:51:11 Installing build dependencies: finished with status 'done' 08:51:11 Getting requirements to build wheel: started 08:51:11 Getting requirements to build wheel: finished with status 'done' 08:51:11 Preparing metadata (pyproject.toml): started 08:51:11 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:11 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.2) 08:51:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 08:51:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 08:51:11 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.3) 08:51:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (11.3.0) 08:51:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 08:51:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 08:51:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 08:51:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 08:51:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.3) 08:51:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 08:51:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.5.0) 08:51:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.10.5) 08:51:11 Building wheels for collected packages: omero-dropbox 08:51:11 Building wheel for omero-dropbox (pyproject.toml): started 08:51:12 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 08:51:12 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=988e11f2bfcdb2417751b2b00837503a16721014c5fcce664cf1032db9538641 08:51:12 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 08:51:12 Successfully built omero-dropbox 08:51:12 Installing collected packages: omero-dropbox 08:51:12 Successfully installed omero-dropbox-5.7.1.dev0 08:51:12 + for x in *.tar.gz 08:51:12 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 08:51:12 Processing ./omero_marshal-0.9.1.dev0.tar.gz 08:51:12 Installing build dependencies: started 08:51:13 Installing build dependencies: finished with status 'done' 08:51:13 Getting requirements to build wheel: started 08:51:13 Getting requirements to build wheel: finished with status 'done' 08:51:13 Preparing metadata (pyproject.toml): started 08:51:13 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:14 Building wheels for collected packages: omero_marshal 08:51:14 Building wheel for omero_marshal (pyproject.toml): started 08:51:14 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 08:51:14 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88121 sha256=8406af2dc487442c6871e483666fd3a229c4012b5636025095fc34bd7bc4c919 08:51:14 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 08:51:14 Successfully built omero_marshal 08:51:14 Installing collected packages: omero_marshal 08:51:14 Successfully installed omero_marshal-0.9.1.dev0 08:51:14 + for x in *.tar.gz 08:51:14 + pip install -U omero_py-5.21.3.dev0.tar.gz 08:51:14 Processing ./omero_py-5.21.3.dev0.tar.gz 08:51:15 Installing build dependencies: started 08:51:15 Installing build dependencies: finished with status 'done' 08:51:15 Getting requirements to build wheel: started 08:51:16 Getting requirements to build wheel: finished with status 'done' 08:51:16 Preparing metadata (pyproject.toml): started 08:51:16 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:16 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.4.4) 08:51:16 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.0.0) 08:51:16 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.3.3) 08:51:16 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (11.3.0) 08:51:16 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (6.0.3) 08:51:16 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.6.5) 08:51:16 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.32.5) 08:51:16 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.2.0) 08:51:16 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.4.3) 08:51:16 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.10) 08:51:16 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2.5.0) 08:51:16 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2025.10.5) 08:51:16 Building wheels for collected packages: omero-py 08:51:16 Building wheel for omero-py (pyproject.toml): started 08:51:17 Building wheel for omero-py (pyproject.toml): finished with status 'done' 08:51:17 Created wheel for omero-py: filename=omero_py-5.21.3.dev0-py3-none-any.whl size=2785643 sha256=b74b4a5ad98f24a67de6bbee09fdf95f09525dd9fd2bd23f576975ae7396ced4 08:51:17 Stored in directory: /home/omero/.cache/pip/wheels/b2/c3/69/7f46e8715cbcb96e4ea5a88612191cc747a1c318af7c8f681c 08:51:17 Successfully built omero-py 08:51:17 Installing collected packages: omero-py 08:51:17 Attempting uninstall: omero-py 08:51:17 Found existing installation: omero-py 5.21.2 08:51:17 Uninstalling omero-py-5.21.2: 08:51:18 Successfully uninstalled omero-py-5.21.2 08:51:19 Successfully installed omero-py-5.21.3.dev0 08:51:20 + for x in *.tar.gz 08:51:20 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 08:51:20 Processing ./omero_scripts-5.9.2.dev0.tar.gz 08:51:20 Installing build dependencies: started 08:51:21 Installing build dependencies: finished with status 'done' 08:51:21 Getting requirements to build wheel: started 08:51:21 Getting requirements to build wheel: finished with status 'done' 08:51:21 Preparing metadata (pyproject.toml): started 08:51:21 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:21 Building wheels for collected packages: omero-scripts 08:51:21 Building wheel for omero-scripts (pyproject.toml): started 08:51:22 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 08:51:22 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=96ca211ff86355900eb21bed6661557e6b73bc80e8644c48a99fcf6a783999f8 08:51:22 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 08:51:22 Successfully built omero-scripts 08:51:22 Installing collected packages: omero-scripts 08:51:22 Successfully installed omero-scripts-5.9.2.dev0 08:51:22 + for x in *.tar.gz 08:51:22 + pip install -U omero_web-5.29.3.dev0.tar.gz 08:51:22 Processing ./omero_web-5.29.3.dev0.tar.gz 08:51:22 Installing build dependencies: started 08:51:23 Installing build dependencies: finished with status 'done' 08:51:23 Getting requirements to build wheel: started 08:51:24 Getting requirements to build wheel: finished with status 'done' 08:51:24 Preparing metadata (pyproject.toml): started 08:51:24 Preparing metadata (pyproject.toml): finished with status 'done' 08:51:24 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (5.21.3.dev0) 08:51:24 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.3.dev0) 08:51:24 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 08:51:24 Collecting Django<4.3,>=4.2.3 (from omero-web==5.29.3.dev0) 08:51:24 Using cached django-4.2.25-py3-none-any.whl.metadata (4.2 kB) 08:51:24 Collecting django-pipeline (from omero-web==5.29.3.dev0) 08:51:24 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 08:51:24 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.3.dev0) 08:51:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 08:51:24 Collecting django-csp (from omero-web==5.29.3.dev0) 08:51:24 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB) 08:51:24 Collecting whitenoise>=5.3.0 (from omero-web==5.29.3.dev0) 08:51:24 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 08:51:24 Collecting gunicorn>=19.3 (from omero-web==5.29.3.dev0) 08:51:24 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 08:51:24 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (0.9.1.dev0) 08:51:24 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (11.3.0) 08:51:24 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (2025.2) 08:51:24 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (3.2.0) 08:51:24 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (25.0) 08:51:24 Collecting importlib-resources (from omero-web==5.29.3.dev0) 08:51:24 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 08:51:24 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.29.3.dev0) 08:51:24 Using cached asgiref-3.10.0-py3-none-any.whl.metadata (9.3 kB) 08:51:24 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.29.3.dev0) 08:51:24 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 08:51:24 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.4.4) 08:51:24 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.0.0) 08:51:24 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.3.3) 08:51:24 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (6.0.3) 08:51:24 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.6.5) 08:51:24 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.32.5) 08:51:24 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.3.dev0) (65.5.1) 08:51:24 Collecting wheel (from django-pipeline->omero-web==5.29.3.dev0) 08:51:24 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 08:51:24 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.4.3) 08:51:24 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.10) 08:51:24 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.5.0) 08:51:24 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2025.10.5) 08:51:24 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 08:51:24 Using cached django-4.2.25-py3-none-any.whl (8.0 MB) 08:51:24 Using cached asgiref-3.10.0-py3-none-any.whl (24 kB) 08:51:24 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 08:51:24 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 08:51:24 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 08:51:24 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 08:51:24 Using cached django_csp-4.0-py3-none-any.whl (25 kB) 08:51:24 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 08:51:24 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 08:51:24 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 08:51:24 Building wheels for collected packages: omero-web 08:51:24 Building wheel for omero-web (pyproject.toml): started 08:51:26 Building wheel for omero-web (pyproject.toml): finished with status 'done' 08:51:26 Created wheel for omero-web: filename=omero_web-5.29.3.dev0-py3-none-any.whl size=2818265 sha256=cb8496e8852317b7eb5b2ed670d3ed0397a8552701b622aded0969f6c1f7a0e9 08:51:26 Stored in directory: /home/omero/.cache/pip/wheels/22/5c/22/7feca3b3e1a26ce9fb6b16848ce79640a0079788b3a7d5450b 08:51:26 Successfully built omero-web 08:51:26 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web 08:51:29 08:51:29 Successfully installed Django-4.2.25 asgiref-3.10.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.3.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.11.0 08:51:29 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 08:51:29 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 08:51:29 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 08:51:29 --2025-10-09 08:51:29-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 08:51:29 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.109.133, 185.199.108.133, ... 08:51:29 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 08:51:29 HTTP request sent, awaiting response... 200 OK 08:51:29 Length: 125361 (122K) [text/plain] 08:51:29 Saving to: ‘Figure_To_Pdf.py’ 08:51:29 08:51:29 0K .......... .......... .......... .......... .......... 40% 3.84M 0s 08:51:29 50K .......... .......... .......... .......... .......... 81% 13.6M 0s 08:51:29 100K .......... .......... .. 100% 4.20M=0.02s 08:51:29 08:51:29 2025-10-09 08:51:29 (5.56 MB/s) - ‘Figure_To_Pdf.py’ saved [125361/125361] 08:51:29 08:51:29 + chmod 755 Figure_To_Pdf.py 08:51:29 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 08:51:29 + omero config set omero.db.name OMERO-server 08:51:31 + omero config set omero.db.host pg 08:51:32 + omero config set omero.db.user postgres 08:51:33 + omero config set omero.data.dir /home/omero/omero-server-data 08:51:34 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 08:51:35 + omero config set omero.db.poolsize 25 08:51:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 08:51:38 + omero config set omero.security.trustStorePassword changeit 08:51:39 + omero config set omero.mail.config true 08:51:40 + omero config set omero.mail.from qa@openmicroscopy.org.uk 08:51:41 + omero config set omero.mail.host smtp.dundee.ac.uk 08:51:43 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 08:51:44 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 08:51:45 + omero certificates 08:51:46 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) 08:51:46 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 08:51:46 + '[' false = true ']' 08:51:46 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 08:51:46 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 08:51:46 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG dbcommand => upgrade 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG dbhost => localhost 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG dbname => OMERO-server 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG dbpass => omero 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG dbuser => omero 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG rootpass => omero 08:51:47 2025-10-09 08:51:47,099 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 08:51:47 2025-10-09 08:51:47,099 [omego.extern] INFO Executing : omero version 08:51:48 OMERO.py version: 08:51:48 OMERO.server version: 08:51:48 5.6.3-576-6a1d635416-ice36-b543 08:51:48 5.21.3.dev0 08:51:48 2025-10-09 08:51:48,379 [omego.extern] INFO Completed [1.279 s] 08:51:48 2025-10-09 08:51:48,379 [omego.extern] DEBUG Using omero CLI from omero 08:51:48 2025-10-09 08:51:48,379 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 08:51:48 2025-10-09 08:51:48,379 [omego.extern] INFO Running [current environment]: omero config get --show-password 08:51:48 2025-10-09 08:51:48,379 [omego.extern] INFO Executing : omero config get --show-password 08:51:49 2025-10-09 08:51:49,568 [omego.extern] INFO Completed [1.189 s] 08:51:49 2025-10-09 08:51:49,568 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 08:51:49 2025-10-09 08:51:49,568 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 08:51:49 2025-10-09 08:51:49,574 [omego.extern] INFO Completed [0.006 s] 08:51:49 2025-10-09 08:51:49,574 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n' 08:51:49 2025-10-09 08:51:49,574 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9 08:51:49 08:51:49 2025-10-09 08:51:49,574 [omego.extern] INFO Running [current environment]: omero config get --show-password 08:51:49 2025-10-09 08:51:49,574 [omego.extern] INFO Executing : omero config get --show-password 08:51:50 2025-10-09 08:51:50,773 [omego.extern] INFO Completed [1.198 s] 08:51:50 2025-10-09 08:51:50,773 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 08:51:50 2025-10-09 08:51:50,773 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 08:51:50 2025-10-09 08:51:50,782 [omego.extern] INFO Completed [0.009 s] 08:51:50 2025-10-09 08:51:50,782 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.6") at port "5432".\n' 08:51:50 2025-10-09 08:51:50,782 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 08:51:50 2025-10-09 08:51:50,782 [omego.extern] INFO Running [current environment]: omero config get --show-password 08:51:50 2025-10-09 08:51:50,782 [omego.extern] INFO Executing : omero config get --show-password 08:51:52 2025-10-09 08:51:52,007 [omego.extern] INFO Completed [1.225 s] 08:51:52 2025-10-09 08:51:52,007 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 08:51:52 2025-10-09 08:51:52,007 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 08:51:52 2025-10-09 08:51:52,018 [omego.extern] INFO Completed [0.010 s] 08:51:52 2025-10-09 08:51:52,018 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 08:51:52 2025-10-09 08:51:52,018 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 08:51:52 2025-10-09 08:51:52,019 [ omego.db] INFO Database is already at OMERO5.4__0 08:51:52 + export LANG=en_US.UTF-8 08:51:52 + LANG=en_US.UTF-8 08:51:52 + export LANGUAGE=en_US:en 08:51:52 + LANGUAGE=en_US:en 08:51:52 + export LC_ALL=en_US.UTF-8 08:51:52 + LC_ALL=en_US.UTF-8 08:51:52 + BUILD_ID=DONT_KILL_ME 08:51:52 + omero admin start 08:51:56 No descriptor given. Using etc/grid/default.xml 08:52:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 08:52:04 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 08:52:04 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 08:52:04 Waiting on startup. Use CTRL-C to exit 08:52:04 + omero admin waitup 08:52:06 Waiting on startup. Use CTRL-C to exit 08:52:06 + omero admin diagnostics 08:52:08 08:52:08 ================================================================================ 08:52:08 OMERO Diagnostics (admin) 08:52:08 ================================================================================ 08:52:08 08:52:08 Commands: java -version 11.0.25 (/usr/bin/java) 08:52:08 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 08:52:08 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 08:52:08 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 08:52:08 Commands: psql --version 16.9 (/usr/bin/psql) 08:52:08 Commands: openssl version 3.2.24 (/usr/bin/openssl) 08:52:08 08:52:08 Component: OMERO.py 5.21.3.dev0 08:52:08 Component: OMERO.server 5.6.3-576-6a1d635416-ice36-b543 08:52:08 08:52:08 Server: icegridnode running 08:52:08 Server: Blitz-0 active (pid = 16330, enabled) 08:52:08 Server: Indexer-0 activating (enabled) 08:52:08 Server: OMERO.Glacier2 active (pid = 16392, enabled) 08:52:08 Server: OMERO.IceStorm active (pid = 16361, enabled) 08:52:08 Server: Processor-0 active (pid = 16368, enabled) 08:52:08 Server: Tables-0 activating (enabled) 08:52:08 08:52:08 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 08:52:08 Log files: Blitz-0.log 28.6 KB errors=0 warnings=1 08:52:08 Log files: DropBox.log n/a 08:52:08 Log files: FileServer.log n/a 08:52:08 Log files: Indexer-0.log 238 B 08:52:08 Log files: MonitorServer.log n/a 08:52:08 Log files: Processor-0.log 630 B 08:52:08 Log files: Tables-0.log 856 B 08:52:08 Log files: TestDropBox.log n/a 08:52:08 Log files: master.err empty 08:52:08 Log files: master.out 30.5 KB 08:52:08 Log files: Total size 0.06 MB 08:52:08 08:52:08 08:52:08 Environment:OMERO_HOME=(unset) 08:52:08 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 08:52:08 Environment:OMERO_NODE=(unset) 08:52:08 Environment:OMERO_MASTER=(unset) 08:52:08 Environment:OMERO_USERDIR=(unset) 08:52:08 Environment:OMERO_TMPDIR=(unset) 08:52:08 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:52:08 Environment:PYTHONPATH=(unset) 08:52:08 Environment:ICE_HOME=/opt/ice-3.6.5 08:52:08 Environment:LD_LIBRARY_PATH=(unset) 08:52:08 Environment:DYLD_LIBRARY_PATH=(unset) 08:52:08 08:52:08 OMERO SSL port:4064 08:52:08 OMERO TCP port:4063 08:52:08 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 08:52:08 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 08:52:08 08:52:08 JVM settings: Blitz-${index} -Xmx7200m 08:52:08 JVM settings: Indexer-${index} -Xmx4800m 08:52:08 JVM settings: PixelData-${index} -Xmx7200m 08:52:08 JVM settings: Repository-${index} -Xmx4800m 08:52:08 08:52:08 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 9 October 2025 64818a684f56e87fe8c50bd66fb100c1301bcac8 08:52:08 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 9 October 2025 64818a684f56e87fe8c50bd66fb100c1301bcac8 08:52:08 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 9 October 2025 64818a684f56e87fe8c50bd66fb100c1301bcac8 08:52:08 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/ome-common.jar OME Common Java 6.1.1-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 9 October 2025 795afc5a00a841620a0b1e375fc4247046486528 08:52:08 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 08:52:08 Jar: lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.0-SNAPSHOT a9ef5e6c786c42732985132d8e319eae19dc1d3b 08:52:08 + deactivate 08:52:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 08:52:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 08:52:08 + export PATH 08:52:08 + unset _OLD_VIRTUAL_PATH 08:52:08 + '[' -n '' ']' 08:52:08 + hash -r 08:52:08 + '[' -n '' ']' 08:52:08 + unset VIRTUAL_ENV 08:52:08 + unset VIRTUAL_ENV_PROMPT 08:52:08 + '[' '!' '' = nondestructive ']' 08:52:08 + unset -f deactivate 08:52:08 Finished: SUCCESS