Started by user devspace [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-zarr-pixel-buffer-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-zarr-pixel-buffer-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-zarr-pixel-buffer-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-zarr-pixel-buffer.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-zarr-pixel-buffer.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-zarr-pixel-buffer.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 2b14103a1c1af2ea6e7b2e09c5d1838a57da56dd (refs/remotes/origin/master) Commit message: "Merge remote-tracking branch 'glencoe/master'" > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 2b14103a1c1af2ea6e7b2e09c5d1838a57da56dd # timeout=10 > git rev-list --no-walk 2b14103a1c1af2ea6e7b2e09c5d1838a57da56dd # timeout=10 Cleaning workspace [Pipeline] pwd [Pipeline] sh + mkdir -p build + echo build [Pipeline] sh > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 + pushd build ~/workspace/OMERO-zarr-pixel-buffer-push/build ~/workspace/OMERO-zarr-pixel-buffer-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-zarr-pixel-buffer-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Downloading charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached certifi-2025.10.5-py3-none-any.whl (163 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.10.5 cffi-2.0.0 charset_normalizer-3.4.4 cryptography-46.0.2 future-1.0.0 idna-3.11 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.14 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-zarr-pixel-buffer.git + BASE_REPO=omero-zarr-pixel-buffer.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-zarr-pixel-buffer-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-10-14 09:07:49,218 [ scc.config] DEBUG Found github.token 2025-10-14 09:07:49,219 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-10-14 09:07:49,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:49,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:50,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-10-14 09:07:50,238 [ scc.gh] DEBUG 4990 remaining from 5000 (Reset at 09:10 2025-10-14 09:07:50,239 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-14 09:07:50,241 [ scc.git] DEBUG Check current status 2025-10-14 09:07:50,241 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-14 09:07:50,243 [ scc.git] DEBUG 2b14103 Merge remote-tracking branch 'glencoe/master' 2025-10-14 09:07:50,243 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-14 09:07:50,281 [ scc.config] DEBUG Found remote.origin.url 2025-10-14 09:07:50,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2025-10-14 09:07:51,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-14 09:07:51,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-14 09:07:52,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-14 09:07:52,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-14 09:07:52,838 [ scc.git] DEBUG Resetting... 2025-10-14 09:07:52,838 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-10-14 09:07:52,841 [ scc.git] DEBUG HEAD is now at 2b14103 Merge remote-tracking branch 'glencoe/master' 2025-10-14 09:07:52,842 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-10-14 09:07:52,878 [ scc.git] DEBUG Check current status 2025-10-14 09:07:52,878 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-14 09:07:52,880 [ scc.git] DEBUG 2b14103 Merge remote-tracking branch 'glencoe/master' 2025-10-14 09:07:52,880 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-14 09:07:52,914 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-10-14 09:07:52,914 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-10-14 09:07:52,914 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-10-14 09:07:52,914 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-10-14 09:07:52,914 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-10-14 09:07:52,914 [ scc.repo] DEBUG ## PRs found: 2025-10-14 09:07:53,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2025-10-14 09:07:53,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/11 HTTP/1.1" 200 None 2025-10-14 09:07:53,946 [ scc.repo] DEBUG - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' 2025-10-14 09:07:54,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/10 HTTP/1.1" 200 None 2025-10-14 09:07:55,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/8 HTTP/1.1" 200 None 2025-10-14 09:07:55,021 [ scc.repo] DEBUG - PR 8 github-actions[bot] 'Merge all feature branches into master' 2025-10-14 09:07:55,021 [ scc.repo] DEBUG ## Branches found: 2025-10-14 09:07:55,022 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:07:55,022 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:07:55,024 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-14 09:07:55,026 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-14 09:07:55,026 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-14 09:07:55,028 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-14 09:07:55,031 [ scc.git] DEBUG Already up to date. 2025-10-14 09:07:55,031 [ scc.git] DEBUG Calling 'git fetch origin pull/8/head' 2025-10-14 09:07:55,330 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2025-10-14 09:07:55,330 [ scc.git] DEBUG * branch refs/pull/8/head -> FETCH_HEAD 2025-10-14 09:07:55,334 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head' 2025-10-14 09:07:55,818 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2025-10-14 09:07:55,819 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD 2025-10-14 09:07:55,821 [ scc.git] DEBUG ## Unique users: [] 2025-10-14 09:07:55,821 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:07:55,821 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:07:55,823 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b87a68ea94b6cff80f830a50623bd6c42e6a6db3' 2025-10-14 09:07:55,826 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:07:55,828 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 8 (Merge all feature branches into master) b87a68ea94b6cff80f830a50623bd6c42e6a6db3' 2025-10-14 09:07:55,835 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-14 09:07:55,837 [ scc.git] DEBUG omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar | Bin 0 -> 28941 bytes 2025-10-14 09:07:55,837 [ scc.git] DEBUG 1 file changed, 0 insertions(+), 0 deletions(-) 2025-10-14 09:07:55,837 [ scc.git] DEBUG create mode 100644 omero-zarr-pixel-buffer-0.5.1-SNAPSHOT.jar 2025-10-14 09:07:55,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:55,999 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0463fe5eb50ae44b278e3cd48c8c8ec41c81b900' 2025-10-14 09:07:56,003 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:07:56,005 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 11 (Support for Zarr v3 (resp NGFF 0.5)) 0463fe5eb50ae44b278e3cd48c8c8ec41c81b900' 2025-10-14 09:07:56,016 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-14 09:07:56,021 [ scc.git] DEBUG .github/workflows/build.yml | 26 +- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .github/workflows/codeql.yml | 13 + 2025-10-14 09:07:56,021 [ scc.git] DEBUG build.gradle | 38 +- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/OmeroAmazonS3ClientFactory.java | 91 +++-- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/OmeroS3FileSystem.java | 10 +- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../zarr/OmeroS3ReadOnlySeekableByteChannel.java | 94 ++--- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBuffer.java | 112 +++--- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsService.java | 93 +---- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../glencoesoftware/omero/zarr/compat/ZArray.java | 56 +++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZArrayv2.java | 67 ++++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZArrayv3.java | 89 +++++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZarrInfo.java | 297 +++++++++++++++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZarrPath.java | 35 ++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZarrPathv2.java | 53 +++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/compat/ZarrPathv3.java | 83 +++++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../storage}/s3fs/OmeroS3FilesystemProvider.java | 103 +++--- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../glencoesoftware/omero/zarr/TestZarrInfo.java | 159 ++++++++ 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/ZarrPixelBufferTest.java | 403 ++++++++------------- 2025-10-14 09:07:56,021 [ scc.git] DEBUG .../omero/zarr/ZarrPixelsServiceTest.java | 2 - 2025-10-14 09:07:56,022 [ scc.git] DEBUG 19 files changed, 1261 insertions(+), 563 deletions(-) 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZArray.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZArrayv2.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZArrayv3.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZarrInfo.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZarrPath.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZarrPathv2.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/main/java/com/glencoesoftware/omero/zarr/compat/ZarrPathv3.java 2025-10-14 09:07:56,022 [ scc.git] DEBUG rename src/main/java/{com/upplication => org/carlspring/cloud/storage}/s3fs/OmeroS3FilesystemProvider.java (63%) 2025-10-14 09:07:56,022 [ scc.git] DEBUG create mode 100644 src/test/java/com/glencoesoftware/omero/zarr/TestZarrInfo.java 2025-10-14 09:07:56,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:56,409 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-14 09:07:56,445 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:07:56,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:07:56,447 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-14 09:07:56,451 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7fe2e9548950> has no local changes 2025-10-14 09:07:56,451 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-zarr-pixel-buffer Excluded PRs: - PR 10 Rdornier 'Install jars' (user: Rdornier) Already up to date. Merged PRs: - PR 8 github-actions[bot] 'Merge all feature branches into master' - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' Generated by OMERO-zarr-pixel-buffer-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/91/)' 2025-10-14 09:07:56,457 [ scc.git] DEBUG [detached HEAD 35606d3] merge master -Dorg -Snone 2025-10-14 09:07:56,457 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2025-10-14 09:07:56,457 [ scc.merge] INFO Excluded PRs: 2025-10-14 09:07:56,457 [ scc.merge] INFO - PR 10 Rdornier 'Install jars' (user: Rdornier) 2025-10-14 09:07:56,457 [ scc.merge] INFO Already up to date. 2025-10-14 09:07:56,457 [ scc.merge] INFO 2025-10-14 09:07:56,458 [ scc.merge] INFO Merged PRs: 2025-10-14 09:07:56,458 [ scc.merge] INFO - PR 8 github-actions[bot] 'Merge all feature branches into master' 2025-10-14 09:07:56,458 [ scc.merge] INFO - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' 2025-10-14 09:07:56,458 [ scc.merge] INFO 2025-10-14 09:07:56,458 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-10-14 09:07:56,458 [ scc.git] DEBUG Calling 'git remote' Merge all submodules2025-10-14 09:07:56,882 [ scc.config] DEBUG Found github.token 2025-10-14 09:07:56,883 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-10-14 09:07:57,087 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:57,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:07:57,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-10-14 09:07:57,916 [ scc.gh] DEBUG 4977 remaining from 5000 (Reset at 09:10 2025-10-14 09:07:57,916 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-14 09:07:57,919 [ scc.git] DEBUG Check current status 2025-10-14 09:07:57,919 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-14 09:07:57,921 [ scc.git] DEBUG 35606d3 merge master -Dorg -Snone 2025-10-14 09:07:57,921 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-14 09:07:57,958 [ scc.config] DEBUG Found remote.origin.url 2025-10-14 09:07:58,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer HTTP/1.1" 200 None 2025-10-14 09:07:58,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-14 09:07:59,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-14 09:07:59,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-14 09:08:00,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-14 09:08:00,267 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-14 09:08:00,305 [ scc.git] DEBUG Resetting... 2025-10-14 09:08:00,305 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-10-14 09:08:00,310 [ scc.git] DEBUG HEAD is now at 35606d3 merge master -Dorg -Snone 2025-10-14 09:08:00,310 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-10-14 09:08:00,346 [ scc.git] DEBUG Check current status 2025-10-14 09:08:00,346 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-14 09:08:00,348 [ scc.git] DEBUG 35606d3 merge master -Dorg -Snone 2025-10-14 09:08:00,348 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-14 09:08:00,383 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-10-14 09:08:00,383 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-10-14 09:08:00,383 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-10-14 09:08:00,383 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-10-14 09:08:00,383 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-10-14 09:08:00,383 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-10-14 09:08:00,384 [ scc.repo] DEBUG ## PRs found: 2025-10-14 09:08:00,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/pulls HTTP/1.1" 200 None 2025-10-14 09:08:01,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/11 HTTP/1.1" 200 None 2025-10-14 09:08:01,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/0463fe5eb50ae44b278e3cd48c8c8ec41c81b900 HTTP/1.1" 200 None 2025-10-14 09:08:02,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/0463fe5eb50ae44b278e3cd48c8c8ec41c81b900/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-14 09:08:02,956 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/0463fe5eb50ae44b278e3cd48c8c8ec41c81b900/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-14 09:08:03,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/0463fe5eb50ae44b278e3cd48c8c8ec41c81b900 HTTP/1.1" 200 None 2025-10-14 09:08:03,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/statuses/0463fe5eb50ae44b278e3cd48c8c8ec41c81b900?per_page=1 HTTP/1.1" 200 2 2025-10-14 09:08:03,871 [ scc.repo] DEBUG - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' 2025-10-14 09:08:04,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/10 HTTP/1.1" 200 None 2025-10-14 09:08:04,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/issues/8 HTTP/1.1" 200 None 2025-10-14 09:08:05,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/b87a68ea94b6cff80f830a50623bd6c42e6a6db3 HTTP/1.1" 200 None 2025-10-14 09:08:06,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/b87a68ea94b6cff80f830a50623bd6c42e6a6db3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-14 09:08:06,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/commits/b87a68ea94b6cff80f830a50623bd6c42e6a6db3 HTTP/1.1" 200 None 2025-10-14 09:08:07,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-zarr-pixel-buffer/statuses/b87a68ea94b6cff80f830a50623bd6c42e6a6db3?per_page=1 HTTP/1.1" 200 2 2025-10-14 09:08:07,280 [ scc.repo] DEBUG - PR 8 github-actions[bot] 'Merge all feature branches into master' 2025-10-14 09:08:07,280 [ scc.repo] DEBUG ## Branches found: 2025-10-14 09:08:07,280 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:08:07,280 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:08:07,282 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-14 09:08:07,284 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-14 09:08:07,284 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-14 09:08:07,287 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-14 09:08:07,290 [ scc.git] DEBUG Already up to date. 2025-10-14 09:08:07,290 [ scc.git] DEBUG Calling 'git fetch origin pull/8/head' 2025-10-14 09:08:07,601 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2025-10-14 09:08:07,601 [ scc.git] DEBUG * branch refs/pull/8/head -> FETCH_HEAD 2025-10-14 09:08:07,604 [ scc.git] DEBUG Calling 'git fetch origin pull/11/head' 2025-10-14 09:08:07,897 [ scc.git] DEBUG From https://github.com/ome/omero-zarr-pixel-buffer 2025-10-14 09:08:07,897 [ scc.git] DEBUG * branch refs/pull/11/head -> FETCH_HEAD 2025-10-14 09:08:07,900 [ scc.git] DEBUG ## Unique users: [] 2025-10-14 09:08:07,900 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:08:07,901 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:08:07,903 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b87a68ea94b6cff80f830a50623bd6c42e6a6db3' 2025-10-14 09:08:07,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:08:07,908 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 8 (Merge all feature branches into master) b87a68ea94b6cff80f830a50623bd6c42e6a6db3' 2025-10-14 09:08:07,911 [ scc.git] DEBUG Already up to date. 2025-10-14 09:08:08,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:08:08,070 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0463fe5eb50ae44b278e3cd48c8c8ec41c81b900' 2025-10-14 09:08:08,073 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:08:08,075 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 11 (Support for Zarr v3 (resp NGFF 0.5)) 0463fe5eb50ae44b278e3cd48c8c8ec41c81b900' 2025-10-14 09:08:08,079 [ scc.git] DEBUG Already up to date. 2025-10-14 09:08:08,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-14 09:08:08,476 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-14 09:08:08,512 [ scc.git] DEBUG Get sha1 of %s 2025-10-14 09:08:08,512 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-14 09:08:08,514 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-14 09:08:08,551 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-14 09:08:08,554 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f06bb3c9990> has no local changes 2025-10-14 09:08:08,554 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-zarr-pixel-buffer Excluded PRs: - PR 10 Rdornier 'Install jars' (user: Rdornier) Already up to date. Merged PRs: - PR 8 github-actions[bot] 'Merge all feature branches into master' - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' Generated by OMERO-zarr-pixel-buffer-push#91 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-zarr-pixel-buffer-push/91/)' 2025-10-14 09:08:08,560 [ scc.git] DEBUG [detached HEAD 581cc6f] merge master -Dorg -Ssuccess-only 2025-10-14 09:08:08,560 [ scc.merge] INFO Repository: ome/omero-zarr-pixel-buffer 2025-10-14 09:08:08,560 [ scc.merge] INFO Excluded PRs: 2025-10-14 09:08:08,560 [ scc.merge] INFO - PR 10 Rdornier 'Install jars' (user: Rdornier) 2025-10-14 09:08:08,560 [ scc.merge] INFO Already up to date. 2025-10-14 09:08:08,560 [ scc.merge] INFO 2025-10-14 09:08:08,560 [ scc.merge] INFO Merged PRs: 2025-10-14 09:08:08,560 [ scc.merge] INFO - PR 8 github-actions[bot] 'Merge all feature branches into master' 2025-10-14 09:08:08,560 [ scc.merge] INFO - PR 11 dominikl 'Support for Zarr v3 (resp NGFF 0.5)' 2025-10-14 09:08:08,560 [ scc.merge] INFO 2025-10-14 09:08:08,560 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-10-14 09:08:08,560 [ scc.git] DEBUG Calling 'git remote' Update component versions grep: settings.gradle: No such file or directory Commit all component version changes HEAD detached from 2b14103 nothing to commit, working tree clean 2025-10-14 09:08:15,051 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-zarr-pixel-buffer/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS