Started by upstream project "Trigger" build number 643 originally caused by: Started by timer [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.39.2' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/3527f795de077758b82663f7b48798100750860c75e4099522d51863b08dc748/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.39.2' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master) Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378" > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.43.5' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 > git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 568 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.2 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.8.1-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel.yaml-0.18.15-py3-none-any.whl.metadata (25 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (9.4 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached PyJWT-2.10.1-py3-none-any.whl.metadata (4.0 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-46.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (5.7 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.6 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-2.23-py3-none-any.whl.metadata (993 bytes) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (36 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) Collecting certifi>=2017.4.17 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB) Collecting ruamel.yaml.clib>=0.2.7 (from ruamel.yaml->scc) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.8.1-py3-none-any.whl (432 kB) Using cached PyJWT-2.10.1-py3-none-any.whl (22 kB) Using cached cryptography-46.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.5 MB) Using cached cffi-2.0.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (215 kB) Using cached pynacl-1.6.0-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached charset_normalizer-3.4.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (150 kB) Using cached idna-3.10-py3-none-any.whl (70 kB) Using cached certifi-2025.10.5-py3-none-any.whl (163 kB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-2.23-py3-none-any.whl (118 kB) Using cached ruamel.yaml-0.18.15-py3-none-any.whl (119 kB) Using cached ruamel.yaml.clib-0.2.14-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (738 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml.clib, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml, requests, cffi, ruamel.yaml.jinja2, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.8.1 PyYAML-6.0.3 certifi-2025.10.5 cffi-2.0.0 charset_normalizer-3.4.3 cryptography-46.0.2 future-1.0.0 idna-3.10 pycparser-2.23 pyjwt-2.10.1 pynacl-1.6.0 requests-2.32.5 ruamel.yaml-0.18.15 ruamel.yaml.clib-0.2.14 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.15.0 urllib3-1.26.20 yaclifw-0.2.0 [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2025-10-06 00:26:47,017 [ scc.config] DEBUG Found github.token 2025-10-06 00:26:47,018 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-10-06 00:26:47,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:26:47,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:26:48,003 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-10-06 00:26:48,004 [ scc.gh] DEBUG 3979 remaining from 5000 (Reset at 00:10 2025-10-06 00:26:48,004 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:26:48,007 [ scc.git] DEBUG Check current status 2025-10-06 00:26:48,007 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:26:48,009 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-10-06 00:26:48,009 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:26:48,054 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-10-06 00:26:48,057 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-10-06 00:26:48,060 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-10-06 00:26:48,063 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-10-06 00:26:48,068 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-10-06 00:26:48,070 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-10-06 00:26:48,073 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-10-06 00:26:48,076 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-10-06 00:26:48,079 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-10-06 00:26:48,082 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-10-06 00:26:48,085 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-10-06 00:26:48,088 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-10-06 00:26:48,091 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-10-06 00:26:48,094 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-10-06 00:26:48,097 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-10-06 00:26:48,100 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-10-06 00:26:48,102 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-10-06 00:26:48,105 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-10-06 00:26:48,107 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-10-06 00:26:48,110 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-10-06 00:26:48,113 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-10-06 00:26:48,116 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-10-06 00:26:48,119 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:26:48,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-10-06 00:26:48,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:26:49,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:26:49,771 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:26:50,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:26:50,179 [ scc.git] DEBUG Resetting... 2025-10-06 00:26:50,179 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-10-06 00:26:50,185 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-10-06 00:26:50,186 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-10-06 00:26:50,279 [ scc.git] DEBUG Check current status 2025-10-06 00:26:50,279 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:26:50,282 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378 2025-10-06 00:26:50,282 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:26:50,325 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-10-06 00:26:50,327 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-10-06 00:26:50,331 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-10-06 00:26:50,334 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-10-06 00:26:50,338 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2025-10-06 00:26:50,341 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-10-06 00:26:50,343 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-10-06 00:26:50,347 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d4) 2025-10-06 00:26:50,349 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-10-06 00:26:50,352 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-10-06 00:26:50,355 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-10-06 00:26:50,358 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-10-06 00:26:50,361 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-10-06 00:26:50,364 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-10-06 00:26:50,367 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-10-06 00:26:50,370 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-10-06 00:26:50,372 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-10-06 00:26:50,375 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-10-06 00:26:50,377 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-10-06 00:26:50,380 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-10-06 00:26:50,382 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-10-06 00:26:50,386 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2025-10-06 00:26:50,387 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-10-06 00:26:50,387 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-10-06 00:26:50,387 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-10-06 00:26:50,387 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-10-06 00:26:50,387 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-10-06 00:26:50,387 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:26:50,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-10-06 00:26:51,147 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-10-06 00:26:51,147 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:26:51,147 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-10-06 00:26:51,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-10-06 00:26:51,623 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:26:51,623 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-10-06 00:26:52,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-10-06 00:26:52,115 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:26:52,115 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-10-06 00:26:52,115 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:26:52,115 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:26:52,115 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:52,118 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:26:52,120 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:26:52,120 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:26:52,122 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:26:52,125 [ scc.git] DEBUG Already up to date. 2025-10-06 00:26:52,125 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-10-06 00:26:52,428 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:26:52,428 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-10-06 00:26:52,434 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-10-06 00:26:52,715 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:26:52,715 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-10-06 00:26:52,721 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-10-06 00:26:53,004 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:26:53,004 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-10-06 00:26:53,010 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:26:53,010 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:26:53,010 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:53,012 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-10-06 00:26:53,014 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:53,016 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-10-06 00:26:53,029 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:26:53,032 [ scc.git] DEBUG scripts | 2 +- 2025-10-06 00:26:53,032 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:26:53,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:26:53,174 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-10-06 00:26:53,177 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:53,179 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-10-06 00:26:53,191 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:26:53,193 [ scc.git] DEBUG omero-figure | 2 +- 2025-10-06 00:26:53,194 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:26:53,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:26:53,565 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-10-06 00:26:53,568 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:53,570 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-10-06 00:26:53,582 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:26:53,585 [ scc.git] DEBUG omero-iviewer | 2 +- 2025-10-06 00:26:53,585 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:26:53,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:26:53,946 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:26:54,003 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-10-06 00:26:54,027 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-10-06 00:26:54,040 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-10-06 00:26:54,041 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:26:54,041 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:26:54,043 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:26:54,116 [ scc.git] DEBUG has no local changes 2025-10-06 00:26:54,116 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:26:54,183 [ scc.git] DEBUG [detached HEAD b0579bb] merge master -Dorg -Snone 2025-10-06 00:26:54,183 [ scc.merge] INFO Repository: ome/omero-plugins 2025-10-06 00:26:54,183 [ scc.merge] INFO Already up to date. 2025-10-06 00:26:54,183 [ scc.merge] INFO 2025-10-06 00:26:54,183 [ scc.merge] INFO Merged PRs: 2025-10-06 00:26:54,183 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-10-06 00:26:54,183 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-10-06 00:26:54,183 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-10-06 00:26:54,183 [ scc.merge] INFO 2025-10-06 00:26:54,183 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-10-06 00:26:54,183 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'omero-cli-zarr': checked out '37ea7000309b4f8b87c5122c138fb59b17ecf86b' Submodule path 'omero-figure': checked out 'baab5c06714c374450f7312b1563a593bde691c3' Submodule path 'omero-iviewer': checked out 'bb94cf8da960e3283090038b04432f301560f5e4' Submodule path 'omero-metadata': checked out '55060a256e99567f21e64ff3c225d933fba1c501' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '00e02072dc29b04eba14c080ca8a0175a1499c15' Submodule path 'scripts': checked out '03b9116196e1a799dd18a666559613d912be01a5' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2025-10-06 00:27:01,236 [ scc.config] DEBUG Found github.token 2025-10-06 00:27:01,237 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2025-10-06 00:27:01,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:27:01,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:27:02,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2025-10-06 00:27:02,371 [ scc.gh] DEBUG 3965 remaining from 5000 (Reset at 00:10 2025-10-06 00:27:02,372 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:02,374 [ scc.git] DEBUG Check current status 2025-10-06 00:27:02,374 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:02,376 [ scc.git] DEBUG b0579bb merge master -Dorg -Snone 2025-10-06 00:27:02,376 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:02,420 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-10-06 00:27:02,423 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-10-06 00:27:02,426 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-10-06 00:27:02,429 [ scc.git] DEBUG +37ea7000309b4f8b87c5122c138fb59b17ecf86b omero-cli-zarr (v0.7.0rc1-2-g37ea700) 2025-10-06 00:27:02,436 [ scc.git] DEBUG +baab5c06714c374450f7312b1563a593bde691c3 omero-figure (v7.2.1-106-gbaab5c06) 2025-10-06 00:27:02,439 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-10-06 00:27:02,442 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-10-06 00:27:02,445 [ scc.git] DEBUG +bb94cf8da960e3283090038b04432f301560f5e4 omero-iviewer (v0.16.0-16-gbb94cf8) 2025-10-06 00:27:02,448 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-10-06 00:27:02,451 [ scc.git] DEBUG +55060a256e99567f21e64ff3c225d933fba1c501 omero-metadata (v0.13.0-8-g55060a2) 2025-10-06 00:27:02,454 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-10-06 00:27:02,457 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-10-06 00:27:02,460 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-10-06 00:27:02,463 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-10-06 00:27:02,466 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-10-06 00:27:02,469 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-10-06 00:27:02,472 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2025-10-06 00:27:02,474 [ scc.git] DEBUG +00e02072dc29b04eba14c080ca8a0175a1499c15 omero-web-zarr (v0.1.1-10-g00e0207) 2025-10-06 00:27:02,477 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-10-06 00:27:02,480 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-10-06 00:27:02,482 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-10-06 00:27:02,486 [ scc.git] DEBUG +03b9116196e1a799dd18a666559613d912be01a5 scripts (v5.9.1-3-g03b9116) 2025-10-06 00:27:02,489 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:02,489 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2025-10-06 00:27:02,490 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2025-10-06 00:27:02,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2025-10-06 00:27:03,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:03,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:04,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:04,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:04,659 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:04,728 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-10-06 00:27:04,728 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:04,730 [ scc.git] DEBUG Check current status 2025-10-06 00:27:04,730 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:04,732 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2025-10-06 00:27:04,733 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:04,769 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:05,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2025-10-06 00:27:05,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:06,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:06,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:06,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:06,940 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:06,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:06,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-10-06 00:27:06,976 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:06,978 [ scc.git] DEBUG Check current status 2025-10-06 00:27:06,978 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:06,980 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2025-10-06 00:27:06,980 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:07,018 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:07,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2025-10-06 00:27:07,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:08,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:08,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:09,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:09,134 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:09,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:09,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-10-06 00:27:09,171 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:09,173 [ scc.git] DEBUG Check current status 2025-10-06 00:27:09,173 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:09,175 [ scc.git] DEBUG ce6e13c Merge pull request #62 from dominikl/export 2025-10-06 00:27:09,175 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:09,211 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:09,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2025-10-06 00:27:10,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:10,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:10,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:11,347 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:11,348 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:11,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:11,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-10-06 00:27:11,384 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:11,386 [ scc.git] DEBUG Check current status 2025-10-06 00:27:11,386 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:11,388 [ scc.git] DEBUG 37ea700 Bump version: 0.7.0rc1 → 0.7.1.dev0 2025-10-06 00:27:11,389 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:11,425 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:11,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2025-10-06 00:27:12,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:12,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:13,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:13,666 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:13,667 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:13,703 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:13,704 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-10-06 00:27:13,704 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:13,706 [ scc.git] DEBUG Check current status 2025-10-06 00:27:13,706 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:13,708 [ scc.git] DEBUG baab5c06 Merge pull request #612 from will-moore/script_version 2025-10-06 00:27:13,709 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:13,745 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:14,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2025-10-06 00:27:14,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:15,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:15,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:15,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:15,899 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:15,934 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:15,935 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-10-06 00:27:15,935 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:15,937 [ scc.git] DEBUG Check current status 2025-10-06 00:27:15,937 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:15,939 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2025-10-06 00:27:15,939 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:15,975 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:16,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2025-10-06 00:27:17,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:17,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:17,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:18,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:18,374 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:18,411 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:18,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-10-06 00:27:18,412 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:18,414 [ scc.git] DEBUG Check current status 2025-10-06 00:27:18,414 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:18,416 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2025-10-06 00:27:18,416 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:18,453 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:18,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2025-10-06 00:27:19,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:19,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:20,179 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:20,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:20,600 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:20,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:20,637 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-10-06 00:27:20,637 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:20,639 [ scc.git] DEBUG Check current status 2025-10-06 00:27:20,639 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:20,641 [ scc.git] DEBUG bb94cf8 Merge pull request #506 from will-moore/pypi_release_action 2025-10-06 00:27:20,642 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:20,679 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:21,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2025-10-06 00:27:21,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:22,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:22,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:22,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:22,920 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:22,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:22,956 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-10-06 00:27:22,957 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:22,958 [ scc.git] DEBUG Check current status 2025-10-06 00:27:22,958 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:22,961 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2025-10-06 00:27:22,961 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:22,997 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:23,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2025-10-06 00:27:23,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:24,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:24,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:25,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:25,167 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:25,203 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:25,204 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-10-06 00:27:25,204 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:25,206 [ scc.git] DEBUG Check current status 2025-10-06 00:27:25,206 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:25,208 [ scc.git] DEBUG 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-10-06 00:27:25,208 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:25,244 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:25,671 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2025-10-06 00:27:26,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:26,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:26,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:27,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:27,325 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:27,360 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:27,361 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-10-06 00:27:27,361 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:27,363 [ scc.git] DEBUG Check current status 2025-10-06 00:27:27,363 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:27,365 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2025-10-06 00:27:27,365 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:27,401 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:27,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2025-10-06 00:27:28,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:28,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:29,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:29,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:29,502 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:29,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:29,538 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-10-06 00:27:29,538 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:29,540 [ scc.git] DEBUG Check current status 2025-10-06 00:27:29,540 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:29,542 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2025-10-06 00:27:29,542 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:29,578 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:30,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2025-10-06 00:27:30,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:30,899 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:31,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:31,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:31,743 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:31,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:31,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-10-06 00:27:31,779 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:31,781 [ scc.git] DEBUG Check current status 2025-10-06 00:27:31,781 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:31,783 [ scc.git] DEBUG bdfeb5e bump sphinx version 2025-10-06 00:27:31,783 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:31,819 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:32,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2025-10-06 00:27:32,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:33,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:33,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:33,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:33,984 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:34,020 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:34,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-10-06 00:27:34,021 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:34,023 [ scc.git] DEBUG Check current status 2025-10-06 00:27:34,023 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:34,025 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2025-10-06 00:27:34,025 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:34,061 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:34,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2025-10-06 00:27:34,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:35,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:35,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:36,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:36,179 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:36,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:36,215 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-10-06 00:27:36,215 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:36,217 [ scc.git] DEBUG Check current status 2025-10-06 00:27:36,217 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:36,220 [ scc.git] DEBUG cda3ec6 Merge pull request #70 from jburel/toml_support 2025-10-06 00:27:36,220 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:36,256 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:36,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-10-06 00:27:36,600 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-10-06 00:27:36,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2025-10-06 00:27:37,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:37,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:38,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:38,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:38,524 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:38,559 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:38,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-10-06 00:27:38,560 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:38,562 [ scc.git] DEBUG Check current status 2025-10-06 00:27:38,562 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:38,564 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2025-10-06 00:27:38,564 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:38,600 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:39,031 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2025-10-06 00:27:39,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:39,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:40,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:40,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:40,773 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:40,809 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:40,810 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-10-06 00:27:40,810 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:40,812 [ scc.git] DEBUG Check current status 2025-10-06 00:27:40,812 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:40,814 [ scc.git] DEBUG 160d894 Fix display of code 2025-10-06 00:27:40,814 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:40,850 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:41,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2025-10-06 00:27:41,912 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:42,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:42,763 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:43,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:43,168 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:43,205 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:43,205 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-10-06 00:27:43,205 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:43,207 [ scc.git] DEBUG Check current status 2025-10-06 00:27:43,207 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:43,209 [ scc.git] DEBUG 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-10-06 00:27:43,210 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:43,246 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:43,246 [ scc.git] DEBUG Repository configuration: base-branch: main 2025-10-06 00:27:43,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2025-10-06 00:27:44,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:44,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:45,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:45,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:45,415 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:45,452 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:45,453 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-10-06 00:27:45,453 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:45,455 [ scc.git] DEBUG Check current status 2025-10-06 00:27:45,455 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:45,457 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2025-10-06 00:27:45,457 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:45,493 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:45,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-10-06 00:27:45,829 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-10-06 00:27:46,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2025-10-06 00:27:46,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:47,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:47,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:47,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:47,817 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:47,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:47,854 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-10-06 00:27:47,854 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:47,856 [ scc.git] DEBUG Check current status 2025-10-06 00:27:47,856 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:47,858 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2025-10-06 00:27:47,858 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:47,895 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:48,252 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-10-06 00:27:48,253 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-10-06 00:27:48,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2025-10-06 00:27:49,008 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:49,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:49,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:50,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:50,214 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:50,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:50,250 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-10-06 00:27:50,250 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:50,252 [ scc.git] DEBUG Check current status 2025-10-06 00:27:50,252 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:50,254 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-10-06 00:27:50,255 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:50,291 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:50,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2025-10-06 00:27:51,172 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:51,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:51,976 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:52,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:52,380 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:52,416 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:52,417 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-10-06 00:27:52,417 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2025-10-06 00:27:52,419 [ scc.git] DEBUG Check current status 2025-10-06 00:27:52,419 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:52,421 [ scc.git] DEBUG 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-10-06 00:27:52,421 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:52,457 [ scc.config] DEBUG Found remote.origin.url 2025-10-06 00:27:52,457 [ scc.git] DEBUG Repository configuration: base-branch: develop 2025-10-06 00:27:52,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-10-06 00:27:52,803 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-10-06 00:27:53,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2025-10-06 00:27:53,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2025-10-06 00:27:53,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2025-10-06 00:27:54,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2025-10-06 00:27:54,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2025-10-06 00:27:54,803 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:27:54,839 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:27:54,839 [ scc.git] DEBUG Resetting... 2025-10-06 00:27:54,839 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2025-10-06 00:27:54,845 [ scc.git] DEBUG HEAD is now at b0579bb merge master -Dorg -Snone 2025-10-06 00:27:54,845 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2025-10-06 00:27:54,901 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2025-10-06 00:27:54,923 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2025-10-06 00:27:54,943 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2025-10-06 00:27:54,956 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2025-10-06 00:27:54,982 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2025-10-06 00:27:54,992 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2025-10-06 00:27:55,014 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2025-10-06 00:27:55,017 [ scc.git] DEBUG Check current status 2025-10-06 00:27:55,017 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2025-10-06 00:27:55,019 [ scc.git] DEBUG b0579bb merge master -Dorg -Snone 2025-10-06 00:27:55,019 [ scc.git] DEBUG Calling 'git submodule status' 2025-10-06 00:27:55,060 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (remotes/origin/HEAD) 2025-10-06 00:27:55,063 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2025-10-06 00:27:55,066 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2025-10-06 00:27:55,069 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2025-10-06 00:27:55,073 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2025-10-06 00:27:55,076 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2025-10-06 00:27:55,078 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2025-10-06 00:27:55,082 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798ce) 2025-10-06 00:27:55,085 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2025-10-06 00:27:55,088 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2025-10-06 00:27:55,090 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2025-10-06 00:27:55,093 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2025-10-06 00:27:55,096 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2025-10-06 00:27:55,099 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2025-10-06 00:27:55,102 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2025-10-06 00:27:55,104 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2025-10-06 00:27:55,107 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2025-10-06 00:27:55,109 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2025-10-06 00:27:55,112 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2025-10-06 00:27:55,114 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2025-10-06 00:27:55,117 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2025-10-06 00:27:55,120 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2025-10-06 00:27:55,121 [ scc.merge] INFO Merging Pull Request(s) based on master 2025-10-06 00:27:55,121 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2025-10-06 00:27:55,121 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2025-10-06 00:27:55,121 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2025-10-06 00:27:55,121 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2025-10-06 00:27:55,121 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2025-10-06 00:27:55,121 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:27:55,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2025-10-06 00:27:55,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2025-10-06 00:27:55,919 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:27:56,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-10-06 00:27:56,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:27:57,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74 HTTP/1.1" 200 None 2025-10-06 00:27:57,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:27:57,936 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-10-06 00:27:58,848 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2025-10-06 00:27:58,849 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:27:59,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-10-06 00:27:59,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:00,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51 HTTP/1.1" 200 None 2025-10-06 00:28:00,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:00,822 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-10-06 00:28:01,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2025-10-06 00:28:01,366 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:28:01,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-10-06 00:28:02,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:02,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2 HTTP/1.1" 200 None 2025-10-06 00:28:03,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:03,247 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-10-06 00:28:03,247 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:28:03,248 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:03,248 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:03,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:28:03,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:28:03,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:28:03,255 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:28:03,257 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:03,257 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2025-10-06 00:28:03,559 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:28:03,560 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2025-10-06 00:28:03,566 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2025-10-06 00:28:03,854 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:28:03,854 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2025-10-06 00:28:03,860 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2025-10-06 00:28:04,136 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2025-10-06 00:28:04,137 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2025-10-06 00:28:04,143 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:28:04,143 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:04,143 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:04,145 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-10-06 00:28:04,148 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:04,150 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2025-10-06 00:28:04,152 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:04,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:04,295 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-10-06 00:28:04,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:04,299 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2025-10-06 00:28:04,302 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:04,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:04,677 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-10-06 00:28:04,679 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:04,681 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2025-10-06 00:28:04,683 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:05,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:05,066 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:28:05,114 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:05,114 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:05,116 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:28:05,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2025-10-06 00:28:05,490 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:28:05,490 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-10-06 00:28:05,490 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:05,490 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:05,492 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:28:05,494 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:28:05,494 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:28:05,497 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:28:05,499 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:05,499 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:28:05,499 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:05,499 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:05,501 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:28:05,538 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:05,538 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:05,541 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:28:05,576 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:28:05,579 [ scc.git] DEBUG has no local changes 2025-10-06 00:28:05,579 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:28:05,584 [ scc.git] DEBUG [detached HEAD d1ff65a] merge master -Dorg -Ssuccess-only 2025-10-06 00:28:05,584 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:28:05,584 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:28:06,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2025-10-06 00:28:06,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2025-10-06 00:28:06,597 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:28:07,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-10-06 00:28:07,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:08,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:08,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4 HTTP/1.1" 200 None 2025-10-06 00:28:09,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:09,022 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:28:09,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2025-10-06 00:28:10,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2025-10-06 00:28:10,122 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:28:10,122 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-10-06 00:28:10,122 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:10,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:10,125 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:28:10,127 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:28:10,127 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:28:10,130 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:28:10,132 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:10,132 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2025-10-06 00:28:10,415 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2025-10-06 00:28:10,415 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2025-10-06 00:28:10,419 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:28:10,419 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:10,419 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:10,421 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-10-06 00:28:10,424 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:10,426 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2025-10-06 00:28:10,432 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:10,434 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:28:10,434 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:28:10,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:10,618 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:28:10,655 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:10,655 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:10,657 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:28:10,694 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:28:10,696 [ scc.git] DEBUG has no local changes 2025-10-06 00:28:10,696 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:28:10,702 [ scc.git] DEBUG [detached HEAD 9e501de] merge master -Dorg -Ssuccess-only 2025-10-06 00:28:10,702 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:28:10,702 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:28:11,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2025-10-06 00:28:11,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/73 HTTP/1.1" 200 None 2025-10-06 00:28:11,754 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:28:12,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-10-06 00:28:12,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:13,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:13,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/d230161123b7bbfcb9363e02bbe289367c532cdc HTTP/1.1" 200 None 2025-10-06 00:28:14,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/d230161123b7bbfcb9363e02bbe289367c532cdc?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:14,201 [ scc.repo] DEBUG - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:28:14,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/71 HTTP/1.1" 200 None 2025-10-06 00:28:15,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-10-06 00:28:15,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:16,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/530b6b0ab1346ef837188b2eb3b1a5f679b490b6 HTTP/1.1" 200 None 2025-10-06 00:28:16,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/530b6b0ab1346ef837188b2eb3b1a5f679b490b6?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:16,678 [ scc.repo] DEBUG - PR 71 dominikl 'Escape slash character in image names' 2025-10-06 00:28:17,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/70 HTTP/1.1" 200 None 2025-10-06 00:28:17,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/69 HTTP/1.1" 200 None 2025-10-06 00:28:18,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-10-06 00:28:18,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:19,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:19,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/eb65a6621a6b07771ed3410c81ddaa1731004c22 HTTP/1.1" 200 None 2025-10-06 00:28:19,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/eb65a6621a6b07771ed3410c81ddaa1731004c22?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:19,981 [ scc.repo] DEBUG - PR 69 dominikl 'Fix help text for impo/export commands' 2025-10-06 00:28:20,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2025-10-06 00:28:20,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2025-10-06 00:28:21,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-10-06 00:28:21,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:22,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:22,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/75fc40970592eca2babd405b65a372f328fb679a HTTP/1.1" 200 None 2025-10-06 00:28:23,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/75fc40970592eca2babd405b65a372f328fb679a?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:28:23,262 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2025-10-06 00:28:23,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2025-10-06 00:28:24,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2025-10-06 00:28:24,163 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:28:24,163 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-10-06 00:28:24,163 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:24,164 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:24,166 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:28:24,168 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:28:24,168 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:28:24,171 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:28:24,173 [ scc.git] DEBUG Already up to date. 2025-10-06 00:28:24,173 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2025-10-06 00:28:24,467 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-10-06 00:28:24,467 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2025-10-06 00:28:24,471 [ scc.git] DEBUG Calling 'git fetch origin pull/69/head' 2025-10-06 00:28:24,748 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-10-06 00:28:24,748 [ scc.git] DEBUG * branch refs/pull/69/head -> FETCH_HEAD 2025-10-06 00:28:24,752 [ scc.git] DEBUG Calling 'git fetch origin pull/71/head' 2025-10-06 00:28:25,043 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-10-06 00:28:25,043 [ scc.git] DEBUG * branch refs/pull/71/head -> FETCH_HEAD 2025-10-06 00:28:25,047 [ scc.git] DEBUG Calling 'git fetch origin pull/73/head' 2025-10-06 00:28:25,323 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2025-10-06 00:28:25,323 [ scc.git] DEBUG * branch refs/pull/73/head -> FETCH_HEAD 2025-10-06 00:28:25,327 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:28:25,327 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:25,327 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:25,330 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...75fc40970592eca2babd405b65a372f328fb679a' 2025-10-06 00:28:25,333 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:25,335 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 75fc40970592eca2babd405b65a372f328fb679a' 2025-10-06 00:28:25,343 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:25,346 [ scc.git] DEBUG src/omero_cli_render.py | 159 +++++++++++++++++++++++++++--------------------- 2025-10-06 00:28:25,346 [ scc.git] DEBUG 1 file changed, 89 insertions(+), 70 deletions(-) 2025-10-06 00:28:25,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:25,486 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-10-06 00:28:25,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:25,491 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 69 (Fix help text for impo/export commands) eb65a6621a6b07771ed3410c81ddaa1731004c22' 2025-10-06 00:28:25,500 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-10-06 00:28:25,501 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:25,503 [ scc.git] DEBUG src/omero_cli_render.py | 14 ++++++-------- 2025-10-06 00:28:25,503 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 8 deletions(-) 2025-10-06 00:28:25,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:25,909 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-10-06 00:28:25,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:25,914 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 71 (Escape slash character in image names) 530b6b0ab1346ef837188b2eb3b1a5f679b490b6' 2025-10-06 00:28:25,922 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2025-10-06 00:28:25,923 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:25,925 [ scc.git] DEBUG src/omero_cli_render.py | 21 ++++++++++++++------- 2025-10-06 00:28:25,925 [ scc.git] DEBUG 1 file changed, 14 insertions(+), 7 deletions(-) 2025-10-06 00:28:26,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:26,297 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-10-06 00:28:26,300 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:26,302 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 73 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) d230161123b7bbfcb9363e02bbe289367c532cdc' 2025-10-06 00:28:26,310 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:26,312 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:28:26,312 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:28:26,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:26,683 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:28:26,719 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:26,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:26,722 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:28:26,758 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:28:26,761 [ scc.git] DEBUG has no local changes 2025-10-06 00:28:26,761 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:28:26,766 [ scc.git] DEBUG [detached HEAD aeae6d4] merge master -Dorg -Ssuccess-only 2025-10-06 00:28:26,767 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:28:26,767 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:28:27,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2025-10-06 00:28:27,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None 2025-10-06 00:28:28,215 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None 2025-10-06 00:28:28,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29 HTTP/1.1" 200 None 2025-10-06 00:28:29,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:29,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:30,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29 HTTP/1.1" 200 None 2025-10-06 00:28:30,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/4628738fdf646d79d13c2f8a29b391de58ba2b29?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:31,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29 HTTP/1.1" 200 None 2025-10-06 00:28:31,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/4628738fdf646d79d13c2f8a29b391de58ba2b29/status HTTP/1.1" 200 None 2025-10-06 00:28:31,492 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"' 2025-10-06 00:28:31,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None 2025-10-06 00:28:32,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None 2025-10-06 00:28:32,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-10-06 00:28:33,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:33,906 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:34,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-10-06 00:28:34,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/b1ec9c408dd417886a980e3368c0d82bfefe491d?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:35,248 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d HTTP/1.1" 200 None 2025-10-06 00:28:35,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/b1ec9c408dd417886a980e3368c0d82bfefe491d/status HTTP/1.1" 200 None 2025-10-06 00:28:35,658 [ scc.repo] DEBUG - PR 181 will-moore 'Add labels support for import' 2025-10-06 00:28:36,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2025-10-06 00:28:36,598 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2025-10-06 00:28:37,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-10-06 00:28:37,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:38,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:38,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-10-06 00:28:39,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bb180dbb97ddc67cd2cf655d56058ba7da765769?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:39,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769 HTTP/1.1" 200 None 2025-10-06 00:28:39,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bb180dbb97ddc67cd2cf655d56058ba7da765769/status HTTP/1.1" 200 None 2025-10-06 00:28:39,934 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-10-06 00:28:40,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172 HTTP/1.1" 200 None 2025-10-06 00:28:40,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/172/comments HTTP/1.1" 200 None 2025-10-06 00:28:41,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b HTTP/1.1" 200 None 2025-10-06 00:28:42,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:42,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:28:42,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b HTTP/1.1" 200 None 2025-10-06 00:28:43,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/0f9cb71c2f2c546fc096a4f824d0164b1014e28b?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:43,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b HTTP/1.1" 200 None 2025-10-06 00:28:44,283 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/0f9cb71c2f2c546fc096a4f824d0164b1014e28b/status HTTP/1.1" 200 None 2025-10-06 00:28:44,284 [ scc.repo] DEBUG - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2025-10-06 00:28:44,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None 2025-10-06 00:28:45,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/169 HTTP/1.1" 200 None 2025-10-06 00:28:45,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167 HTTP/1.1" 200 None 2025-10-06 00:28:46,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/167/comments HTTP/1.1" 200 None 2025-10-06 00:28:46,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2025-10-06 00:28:47,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2025-10-06 00:28:47,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2025-10-06 00:28:48,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2025-10-06 00:28:48,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2025-10-06 00:28:48,635 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:28:48,635 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-10-06 00:28:48,635 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:48,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:48,638 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:28:48,640 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:28:48,640 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:28:48,643 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:28:48,655 [ scc.git] DEBUG Updating 11d3587..37ea700 2025-10-06 00:28:49,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2025-10-06 00:28:49,977 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2025-10-06 00:28:50,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2025-10-06 00:28:51,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2025-10-06 00:28:51,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2025-10-06 00:28:52,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2025-10-06 00:28:53,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2025-10-06 00:28:53,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2025-10-06 00:28:53,989 [ scc.git] DEBUG Calling 'git fetch origin pull/172/head' 2025-10-06 00:28:54,277 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-10-06 00:28:54,277 [ scc.git] DEBUG * branch refs/pull/172/head -> FETCH_HEAD 2025-10-06 00:28:54,281 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2025-10-06 00:28:54,595 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-10-06 00:28:54,596 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2025-10-06 00:28:54,600 [ scc.git] DEBUG Calling 'git fetch origin pull/181/head' 2025-10-06 00:28:54,879 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-10-06 00:28:54,879 [ scc.git] DEBUG * branch refs/pull/181/head -> FETCH_HEAD 2025-10-06 00:28:54,883 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head' 2025-10-06 00:28:55,161 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2025-10-06 00:28:55,161 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD 2025-10-06 00:28:55,166 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:28:55,166 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:55,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:55,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0f9cb71c2f2c546fc096a4f824d0164b1014e28b' 2025-10-06 00:28:55,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:55,173 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 0f9cb71c2f2c546fc096a4f824d0164b1014e28b' 2025-10-06 00:28:55,183 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:28:55,186 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 5 +- 2025-10-06 00:28:55,187 [ scc.git] DEBUG .isort.cfg | 2 +- 2025-10-06 00:28:55,187 [ scc.git] DEBUG README.rst | 5 +- 2025-10-06 00:28:55,187 [ scc.git] DEBUG setup.py | 5 +- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/__init__.py | 4 -- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/cli.py | 18 +++++- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/masks.py | 21 ++++--- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 92 ++++++++++++++++++--------- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/util.py | 13 ++-- 2025-10-06 00:28:55,187 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 59 +++++++---------- 2025-10-06 00:28:55,188 [ scc.git] DEBUG test/integration/clitest/test_export.py | 108 +++++++++++++++++++++++++++----- 2025-10-06 00:28:55,188 [ scc.git] DEBUG 11 files changed, 224 insertions(+), 108 deletions(-) 2025-10-06 00:28:55,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:55,327 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-10-06 00:28:55,331 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:55,333 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-10-06 00:28:55,342 [ scc.git] DEBUG Auto-merging CHANGELOG.md 2025-10-06 00:28:55,342 [ scc.git] DEBUG CONFLICT (content): Merge conflict in CHANGELOG.md 2025-10-06 00:28:55,342 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2025-10-06 00:28:55,342 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2025-10-06 00:28:55,342 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2025-10-06 00:28:55,342 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:28:55,343 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:28:55,345 [ scc.git] DEBUG Calling 'git reset --hard b6d530528d94129c288ef3402e56bd89ecb412a3' 2025-10-06 00:28:55,349 [ scc.git] DEBUG HEAD is now at b6d5305 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2025-10-06 00:28:55,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:55,719 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b bb180dbb97ddc67cd2cf655d56058ba7da765769' 2025-10-06 00:28:55,722 [ scc.git] DEBUG Calling 'git diff --name-only f7eea7cd6c149e1c5b2e4648753ac0a1f8a65dfb..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2025-10-06 00:28:55,725 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - test/integration/clitest/test_export.py - Upstream changes - CHANGELOG.md --conflicts 2025-10-06 00:28:55,727 [ scc.config] DEBUG Found github.token 2025-10-06 00:28:55,727 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2025-10-06 00:28:55,727 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b1ec9c408dd417886a980e3368c0d82bfefe491d' 2025-10-06 00:28:55,730 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:55,732 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 181 (Add labels support for import) b1ec9c408dd417886a980e3368c0d82bfefe491d' 2025-10-06 00:28:55,741 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2025-10-06 00:28:55,741 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2025-10-06 00:28:55,741 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py 2025-10-06 00:28:55,741 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:28:55,741 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:28:55,744 [ scc.git] DEBUG Calling 'git reset --hard b6d530528d94129c288ef3402e56bd89ecb412a3' 2025-10-06 00:28:55,749 [ scc.git] DEBUG HEAD is now at b6d5305 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2025-10-06 00:28:56,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:56,118 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b b1ec9c408dd417886a980e3368c0d82bfefe491d' 2025-10-06 00:28:56,121 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2025-10-06 00:28:56,123 [ scc.git] INFO - PR 181 will-moore 'Add labels support for import' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - src/omero_zarr/zarr_import.py --conflicts 2025-10-06 00:28:56,125 [ scc.config] DEBUG Found github.token 2025-10-06 00:28:56,125 [ scc.git] DEBUG Not adding comment to issue #181, already --conflicts. 2025-10-06 00:28:56,126 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4628738fdf646d79d13c2f8a29b391de58ba2b29' 2025-10-06 00:28:56,129 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:56,131 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") 4628738fdf646d79d13c2f8a29b391de58ba2b29' 2025-10-06 00:28:56,138 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py 2025-10-06 00:28:56,138 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py 2025-10-06 00:28:56,139 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:28:56,139 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:28:56,141 [ scc.git] DEBUG Calling 'git reset --hard b6d530528d94129c288ef3402e56bd89ecb412a3' 2025-10-06 00:28:56,144 [ scc.git] DEBUG HEAD is now at b6d5305 merge master -Dorg -Ssuccess-only: PR 172 (Use zarr v3 and updated ome-zarr-py) 2025-10-06 00:28:56,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:28:56,511 [ scc.git] DEBUG Calling 'git merge-base 37ea7000309b4f8b87c5122c138fb59b17ecf86b 4628738fdf646d79d13c2f8a29b391de58ba2b29' 2025-10-06 00:28:56,514 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..37ea7000309b4f8b87c5122c138fb59b17ecf86b' 2025-10-06 00:28:56,516 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #172 will-moore 'Use zarr v3 and updated ome-zarr-py' - src/omero_zarr/zarr_import.py - PR #181 will-moore 'Add labels support for import' - src/omero_zarr/zarr_import.py --conflicts 2025-10-06 00:28:56,518 [ scc.config] DEBUG Found github.token 2025-10-06 00:28:56,518 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts. 2025-10-06 00:28:56,518 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:28:56,553 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:28:56,553 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:28:56,555 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:28:56,591 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:28:56,594 [ scc.git] DEBUG has no local changes 2025-10-06 00:28:56,594 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 181 will-moore 'Add labels support for import' - PR 182 will-moore 'Revert "Remove support for Plate import"' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:28:56,600 [ scc.git] DEBUG [detached HEAD c3ebde5] merge master -Dorg -Ssuccess-only 2025-10-06 00:28:56,600 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:28:56,600 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:28:57,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2025-10-06 00:28:57,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/643 HTTP/1.1" 200 None 2025-10-06 00:28:58,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/643/comments HTTP/1.1" 200 None 2025-10-06 00:28:58,232 [ scc.repo] DEBUG # ... Include label: include 2025-10-06 00:28:58,744 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/deca0590336231198ee955604cc63b333149f7a9 HTTP/1.1" 200 None 2025-10-06 00:28:59,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/deca0590336231198ee955604cc63b333149f7a9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:28:59,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/deca0590336231198ee955604cc63b333149f7a9 HTTP/1.1" 200 None 2025-10-06 00:29:00,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/deca0590336231198ee955604cc63b333149f7a9?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:00,109 [ scc.repo] DEBUG - PR 643 Rdornier 'Shape scaling' 2025-10-06 00:29:00,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642 HTTP/1.1" 200 None 2025-10-06 00:29:01,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/642/comments HTTP/1.1" 200 None 2025-10-06 00:29:01,033 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:01,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2660dd0f37e2657b4eb48878e9873c7566a8c2db HTTP/1.1" 200 None 2025-10-06 00:29:02,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2660dd0f37e2657b4eb48878e9873c7566a8c2db/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:02,700 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2660dd0f37e2657b4eb48878e9873c7566a8c2db/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:03,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/2660dd0f37e2657b4eb48878e9873c7566a8c2db HTTP/1.1" 200 None 2025-10-06 00:29:03,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/2660dd0f37e2657b4eb48878e9873c7566a8c2db?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:03,584 [ scc.repo] DEBUG - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-10-06 00:29:04,226 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641 HTTP/1.1" 200 None 2025-10-06 00:29:04,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/641/comments HTTP/1.1" 200 None 2025-10-06 00:29:05,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637 HTTP/1.1" 200 None 2025-10-06 00:29:05,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/637/comments HTTP/1.1" 200 None 2025-10-06 00:29:05,717 [ scc.repo] DEBUG # ... Include label: include 2025-10-06 00:29:06,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/31d53f83f21d60e0a6d262403f47be360df7fd04 HTTP/1.1" 200 None 2025-10-06 00:29:06,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/31d53f83f21d60e0a6d262403f47be360df7fd04/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:07,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/31d53f83f21d60e0a6d262403f47be360df7fd04 HTTP/1.1" 200 None 2025-10-06 00:29:07,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/31d53f83f21d60e0a6d262403f47be360df7fd04?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:07,596 [ scc.repo] DEBUG - PR 637 Rdornier 'Fix scalebar position' 2025-10-06 00:29:08,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/619 HTTP/1.1" 200 None 2025-10-06 00:29:08,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610 HTTP/1.1" 200 None 2025-10-06 00:29:08,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/610/comments HTTP/1.1" 200 None 2025-10-06 00:29:09,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-10-06 00:29:09,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:10,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:10,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/59ca9bf79effaded86845d8c49fb94bda6727333 HTTP/1.1" 200 None 2025-10-06 00:29:11,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/59ca9bf79effaded86845d8c49fb94bda6727333?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:11,356 [ scc.repo] DEBUG - PR 610 will-moore 'Add docs/contributing.rst' 2025-10-06 00:29:11,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600 HTTP/1.1" 200 None 2025-10-06 00:29:12,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/600/comments HTTP/1.1" 200 None 2025-10-06 00:29:12,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/13200965/issues/600/comments?page=2 HTTP/1.1" 200 None 2025-10-06 00:29:12,796 [ scc.repo] DEBUG # ... Include label: include 2025-10-06 00:29:13,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ea413e362d546a9fffcf8b23cca93a1b42173d6f HTTP/1.1" 200 None 2025-10-06 00:29:13,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ea413e362d546a9fffcf8b23cca93a1b42173d6f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:14,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ea413e362d546a9fffcf8b23cca93a1b42173d6f HTTP/1.1" 200 None 2025-10-06 00:29:14,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ea413e362d546a9fffcf8b23cca93a1b42173d6f?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:14,536 [ scc.repo] DEBUG - PR 600 Rdornier 'Label on rois' 2025-10-06 00:29:14,537 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:29:14,537 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-10-06 00:29:14,537 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:14,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:14,539 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:29:14,542 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:29:14,542 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:29:14,546 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:29:14,567 [ scc.git] DEBUG Updating 9cc36cde..baab5c06 2025-10-06 00:29:15,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2025-10-06 00:29:17,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2025-10-06 00:29:18,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2025-10-06 00:29:19,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2025-10-06 00:29:19,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2025-10-06 00:29:20,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2025-10-06 00:29:21,255 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2025-10-06 00:29:21,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2025-10-06 00:29:22,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2025-10-06 00:29:22,641 [ scc.git] DEBUG Calling 'git fetch origin pull/600/head' 2025-10-06 00:29:22,942 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-10-06 00:29:22,942 [ scc.git] DEBUG * branch refs/pull/600/head -> FETCH_HEAD 2025-10-06 00:29:22,947 [ scc.git] DEBUG Calling 'git fetch origin pull/610/head' 2025-10-06 00:29:23,240 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-10-06 00:29:23,240 [ scc.git] DEBUG * branch refs/pull/610/head -> FETCH_HEAD 2025-10-06 00:29:23,245 [ scc.git] DEBUG Calling 'git fetch origin pull/637/head' 2025-10-06 00:29:23,524 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-10-06 00:29:23,524 [ scc.git] DEBUG * branch refs/pull/637/head -> FETCH_HEAD 2025-10-06 00:29:23,528 [ scc.git] DEBUG Calling 'git fetch origin pull/642/head' 2025-10-06 00:29:23,803 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-10-06 00:29:23,803 [ scc.git] DEBUG * branch refs/pull/642/head -> FETCH_HEAD 2025-10-06 00:29:23,807 [ scc.git] DEBUG Calling 'git fetch origin pull/643/head' 2025-10-06 00:29:24,086 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2025-10-06 00:29:24,086 [ scc.git] DEBUG * branch refs/pull/643/head -> FETCH_HEAD 2025-10-06 00:29:24,091 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:29:24,091 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:24,091 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:24,093 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ea413e362d546a9fffcf8b23cca93a1b42173d6f' 2025-10-06 00:29:24,100 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:24,102 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 600 (Label on rois) ea413e362d546a9fffcf8b23cca93a1b42173d6f' 2025-10-06 00:29:24,127 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-10-06 00:29:24,127 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-10-06 00:29:24,127 [ scc.git] DEBUG Auto-merging src/index.html 2025-10-06 00:29:24,127 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:24,137 [ scc.git] DEBUG .gitignore | 2 + 2025-10-06 00:29:24,137 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 274 +++++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/css/figure.css | 18 +- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 0 -> 2477 bytes 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/index.html | 44 +- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/models/panel_model.js | 69 +- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shapeEditorTest.js | 29 +- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 210 +++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/line.js | 217 +++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/point.js | 205 +++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 209 +++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/rect.js | 214 +++++- 2025-10-06 00:29:24,137 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 427 +++++++++++- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/js/shape_editor/text.js | 763 +++++++++++++++++++++ 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/js/views/panel_view.js | 2 +- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/js/views/right_panel_view.js | 120 +++- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 57 +- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 200 +++++- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/shapeEditorTest.html | 37 +- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 4 +- 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 51 ++ 2025-10-06 00:29:24,138 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 382 ++++++++--- 2025-10-06 00:29:24,138 [ scc.git] DEBUG 22 files changed, 3299 insertions(+), 235 deletions(-) 2025-10-06 00:29:24,138 [ scc.git] DEBUG create mode 100644 src/images/text-icon-24.png 2025-10-06 00:29:24,138 [ scc.git] DEBUG create mode 100644 src/js/shape_editor/text.js 2025-10-06 00:29:24,138 [ scc.git] DEBUG create mode 100644 src/templates/shapes/shape_sidebar.template.html 2025-10-06 00:29:24,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:24,279 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...59ca9bf79effaded86845d8c49fb94bda6727333' 2025-10-06 00:29:24,285 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:24,288 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 610 (Add docs/contributing.rst) 59ca9bf79effaded86845d8c49fb94bda6727333' 2025-10-06 00:29:24,305 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:24,308 [ scc.git] DEBUG .github/PULL_REQUEST_TEMPLATE.md | 5 +++ 2025-10-06 00:29:24,308 [ scc.git] DEBUG README.rst | 4 +- 2025-10-06 00:29:24,308 [ scc.git] DEBUG docs/contributing.md | 89 ++++++++++++++++++++++++++++++++++++++++ 2025-10-06 00:29:24,308 [ scc.git] DEBUG 3 files changed, 97 insertions(+), 1 deletion(-) 2025-10-06 00:29:24,308 [ scc.git] DEBUG create mode 100644 .github/PULL_REQUEST_TEMPLATE.md 2025-10-06 00:29:24,308 [ scc.git] DEBUG create mode 100644 docs/contributing.md 2025-10-06 00:29:24,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:24,675 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...31d53f83f21d60e0a6d262403f47be360df7fd04' 2025-10-06 00:29:24,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:24,684 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 637 (Fix scalebar position) 31d53f83f21d60e0a6d262403f47be360df7fd04' 2025-10-06 00:29:24,710 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2025-10-06 00:29:24,710 [ scc.git] DEBUG Auto-merging src/css/figure.css 2025-10-06 00:29:24,710 [ scc.git] DEBUG Auto-merging src/js/views/panel_view.js 2025-10-06 00:29:24,710 [ scc.git] DEBUG Auto-merging src/templates/scalebar_form.template.html 2025-10-06 00:29:24,710 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/templates/scalebar_form.template.html 2025-10-06 00:29:24,710 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:29:24,710 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:29:24,716 [ scc.git] DEBUG Calling 'git reset --hard a5cb957d8f31ce031a4b87e6988121b856cba7e5' 2025-10-06 00:29:24,726 [ scc.git] DEBUG HEAD is now at a5cb957d merge master -Dorg -Ssuccess-only: PR 610 (Add docs/contributing.rst) 2025-10-06 00:29:25,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:25,067 [ scc.git] DEBUG Calling 'git merge-base baab5c06714c374450f7312b1563a593bde691c3 31d53f83f21d60e0a6d262403f47be360df7fd04' 2025-10-06 00:29:25,071 [ scc.git] DEBUG Calling 'git diff --name-only 6f04c413f7eceadf9e66e35f524d44413ae0ef46..baab5c06714c374450f7312b1563a593bde691c3' 2025-10-06 00:29:25,074 [ scc.git] INFO - PR 637 Rdornier 'Fix scalebar position' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/templates/scalebar_form.template.html --conflicts 2025-10-06 00:29:25,076 [ scc.config] DEBUG Found github.token 2025-10-06 00:29:25,076 [ scc.git] DEBUG Not adding comment to issue #637, already --conflicts. 2025-10-06 00:29:25,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2660dd0f37e2657b4eb48878e9873c7566a8c2db' 2025-10-06 00:29:25,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:25,084 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 642 (Bump vite from 6.2.6 to 6.3.6) 2660dd0f37e2657b4eb48878e9873c7566a8c2db' 2025-10-06 00:29:25,099 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:25,103 [ scc.git] DEBUG package-lock.json | 92 ++++++++++++++++++++++++++++++++++++++++++++++++++++--- 2025-10-06 00:29:25,103 [ scc.git] DEBUG package.json | 2 +- 2025-10-06 00:29:25,103 [ scc.git] DEBUG 2 files changed, 88 insertions(+), 6 deletions(-) 2025-10-06 00:29:25,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:25,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...deca0590336231198ee955604cc63b333149f7a9' 2025-10-06 00:29:25,469 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:25,471 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 643 (Shape scaling) deca0590336231198ee955604cc63b333149f7a9' 2025-10-06 00:29:25,489 [ scc.git] DEBUG Auto-merging src/js/shape_editor/ellipse.js 2025-10-06 00:29:25,489 [ scc.git] DEBUG Auto-merging src/js/shape_editor/line.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Auto-merging src/js/shape_editor/point.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Auto-merging src/js/shape_editor/polygon.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Auto-merging src/js/shape_editor/rect.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/shape_editor/rect.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Auto-merging src/js/shape_editor/shape_manager.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/js/shape_editor/shape_manager.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Auto-merging src/js/views/roi_modal_view.js 2025-10-06 00:29:25,490 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:29:25,490 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:29:25,494 [ scc.git] DEBUG Calling 'git reset --hard 1033f66df5053b213ab027c828eea976338039c4' 2025-10-06 00:29:25,499 [ scc.git] DEBUG HEAD is now at 1033f66d merge master -Dorg -Ssuccess-only: PR 642 (Bump vite from 6.2.6 to 6.3.6) 2025-10-06 00:29:25,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:25,846 [ scc.git] DEBUG Calling 'git merge-base baab5c06714c374450f7312b1563a593bde691c3 deca0590336231198ee955604cc63b333149f7a9' 2025-10-06 00:29:25,850 [ scc.git] DEBUG Calling 'git diff --name-only 6f04c413f7eceadf9e66e35f524d44413ae0ef46..baab5c06714c374450f7312b1563a593bde691c3' 2025-10-06 00:29:25,853 [ scc.git] INFO - PR 643 Rdornier 'Shape scaling' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #600 Rdornier 'Label on rois' - src/js/shape_editor/rect.js - src/js/shape_editor/shape_manager.js --conflicts 2025-10-06 00:29:25,855 [ scc.config] DEBUG Found github.token 2025-10-06 00:29:25,855 [ scc.git] DEBUG Not adding comment to issue #643, already --conflicts. 2025-10-06 00:29:25,855 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:29:25,890 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:25,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:25,892 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:29:25,926 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:29:25,931 [ scc.git] DEBUG has no local changes 2025-10-06 00:29:25,932 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..baab5c06 Previously merged: - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Conflicting PRs (not included): - PR 637 Rdornier 'Fix scalebar position' - PR 643 Rdornier 'Shape scaling' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:29:25,939 [ scc.git] DEBUG [detached HEAD 31971f1f] merge master -Dorg -Ssuccess-only 2025-10-06 00:29:25,940 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:29:25,940 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:29:26,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2025-10-06 00:29:26,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2025-10-06 00:29:26,855 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:27,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-10-06 00:29:27,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:28,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:29,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c HTTP/1.1" 200 None 2025-10-06 00:29:29,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:29,521 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:29:29,995 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2025-10-06 00:29:30,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2025-10-06 00:29:30,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-10-06 00:29:31,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:31,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337 HTTP/1.1" 200 None 2025-10-06 00:29:32,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:32,331 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2025-10-06 00:29:32,331 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:29:32,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-10-06 00:29:32,331 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:32,332 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:32,334 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:29:32,336 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:29:32,336 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:29:32,338 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:29:32,341 [ scc.git] DEBUG Already up to date. 2025-10-06 00:29:32,341 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2025-10-06 00:29:32,626 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-10-06 00:29:32,626 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2025-10-06 00:29:32,630 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2025-10-06 00:29:32,914 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2025-10-06 00:29:32,914 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2025-10-06 00:29:32,918 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:29:32,918 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:32,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:32,920 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-10-06 00:29:32,924 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:32,925 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2025-10-06 00:29:32,932 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2025-10-06 00:29:32,933 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:32,935 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2025-10-06 00:29:32,935 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2025-10-06 00:29:33,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:33,071 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-10-06 00:29:33,074 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:33,076 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2025-10-06 00:29:33,082 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:33,084 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:29:33,084 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:29:33,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:33,462 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:29:33,498 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:33,498 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:33,500 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:29:33,535 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:29:33,538 [ scc.git] DEBUG has no local changes 2025-10-06 00:29:33,538 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:29:33,543 [ scc.git] DEBUG [detached HEAD 0fad965] merge master -Dorg -Ssuccess-only 2025-10-06 00:29:33,544 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:29:33,544 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:29:34,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2025-10-06 00:29:34,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2025-10-06 00:29:35,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2025-10-06 00:29:35,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2025-10-06 00:29:35,725 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:36,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-10-06 00:29:36,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:37,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:37,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062 HTTP/1.1" 200 None 2025-10-06 00:29:38,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:38,334 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-10-06 00:29:38,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2025-10-06 00:29:39,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2025-10-06 00:29:39,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2025-10-06 00:29:39,805 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:40,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-10-06 00:29:40,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:41,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:41,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d HTTP/1.1" 200 None 2025-10-06 00:29:42,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:42,318 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-10-06 00:29:42,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2025-10-06 00:29:42,804 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:43,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-10-06 00:29:43,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:44,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:44,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c HTTP/1.1" 200 None 2025-10-06 00:29:45,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:45,314 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-10-06 00:29:45,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2025-10-06 00:29:45,777 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:46,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-10-06 00:29:46,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:47,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:47,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d HTTP/1.1" 200 None 2025-10-06 00:29:48,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:48,263 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-10-06 00:29:48,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2025-10-06 00:29:49,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2025-10-06 00:29:49,193 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:49,750 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-10-06 00:29:50,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:50,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:51,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5 HTTP/1.1" 200 None 2025-10-06 00:29:51,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:51,694 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-10-06 00:29:52,165 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2025-10-06 00:29:52,165 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:52,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-10-06 00:29:53,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:53,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:54,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b HTTP/1.1" 200 None 2025-10-06 00:29:54,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:54,723 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-10-06 00:29:55,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2025-10-06 00:29:55,209 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:29:55,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-10-06 00:29:56,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:29:56,761 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:29:57,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e HTTP/1.1" 200 None 2025-10-06 00:29:57,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:29:57,729 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-10-06 00:29:57,729 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:29:57,729 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-10-06 00:29:57,729 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:57,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:57,732 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:29:57,734 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:29:57,734 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:29:57,737 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:29:57,739 [ scc.git] DEBUG Already up to date. 2025-10-06 00:29:57,739 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2025-10-06 00:29:58,026 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:58,026 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2025-10-06 00:29:58,030 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2025-10-06 00:29:58,305 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:58,305 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2025-10-06 00:29:58,309 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2025-10-06 00:29:58,599 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:58,599 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2025-10-06 00:29:58,603 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2025-10-06 00:29:58,873 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:58,874 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2025-10-06 00:29:58,877 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2025-10-06 00:29:59,159 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:59,159 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2025-10-06 00:29:59,163 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2025-10-06 00:29:59,436 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:59,436 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2025-10-06 00:29:59,440 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2025-10-06 00:29:59,720 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2025-10-06 00:29:59,720 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2025-10-06 00:29:59,724 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:29:59,724 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:29:59,724 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:59,726 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-10-06 00:29:59,728 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:59,730 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2025-10-06 00:29:59,738 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:59,743 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2025-10-06 00:29:59,743 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2025-10-06 00:29:59,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:29:59,879 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-10-06 00:29:59,882 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:29:59,884 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2025-10-06 00:29:59,899 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:29:59,899 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:29:59,904 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2025-10-06 00:29:59,904 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2025-10-06 00:30:00,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:00,338 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-10-06 00:30:00,341 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:00,343 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-10-06 00:30:00,357 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:00,357 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-10-06 00:30:00,358 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:00,358 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:00,360 [ scc.git] DEBUG Calling 'git reset --hard 468670170663704d69f70e305c0ca5e7d9ccc94b' 2025-10-06 00:30:00,364 [ scc.git] DEBUG HEAD is now at 4686701 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2025-10-06 00:30:00,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:00,744 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2025-10-06 00:30:00,746 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-10-06 00:30:00,749 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2025-10-06 00:30:00,751 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:00,751 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2025-10-06 00:30:00,751 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-10-06 00:30:00,753 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:00,756 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2025-10-06 00:30:00,771 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:00,771 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:00,776 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2025-10-06 00:30:00,776 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2025-10-06 00:30:01,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:01,139 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-10-06 00:30:01,142 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:01,144 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2025-10-06 00:30:01,159 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:01,160 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:01,164 [ scc.git] DEBUG package-lock.json | 6 +++--- 2025-10-06 00:30:01,164 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2025-10-06 00:30:01,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:01,527 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-10-06 00:30:01,529 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:01,531 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-10-06 00:30:01,546 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:01,546 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-10-06 00:30:01,547 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:01,547 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:01,549 [ scc.git] DEBUG Calling 'git reset --hard 17af246fe57482577d2d0497112f2a9fb808082a' 2025-10-06 00:30:01,553 [ scc.git] DEBUG HEAD is now at 17af246 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-10-06 00:30:02,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:02,103 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2025-10-06 00:30:02,106 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-10-06 00:30:02,108 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2025-10-06 00:30:02,110 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:02,110 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2025-10-06 00:30:02,110 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-10-06 00:30:02,113 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:02,115 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-10-06 00:30:02,132 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:02,132 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-10-06 00:30:02,132 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:02,132 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:02,135 [ scc.git] DEBUG Calling 'git reset --hard 17af246fe57482577d2d0497112f2a9fb808082a' 2025-10-06 00:30:02,139 [ scc.git] DEBUG HEAD is now at 17af246 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2025-10-06 00:30:02,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:02,505 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2025-10-06 00:30:02,508 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2025-10-06 00:30:02,510 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2025-10-06 00:30:02,512 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:02,512 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2025-10-06 00:30:02,512 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:30:02,549 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:02,549 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:02,551 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:30:02,585 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:30:02,589 [ scc.git] DEBUG has no local changes 2025-10-06 00:30:02,589 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:30:02,596 [ scc.git] DEBUG [detached HEAD d2a46dd] merge master -Dorg -Ssuccess-only 2025-10-06 00:30:02,596 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:30:02,596 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:30:03,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2025-10-06 00:30:03,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/508 HTTP/1.1" 200 None 2025-10-06 00:30:04,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503 HTTP/1.1" 200 None 2025-10-06 00:30:04,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/503/comments HTTP/1.1" 200 None 2025-10-06 00:30:05,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502 HTTP/1.1" 200 None 2025-10-06 00:30:05,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/502/comments HTTP/1.1" 200 None 2025-10-06 00:30:05,498 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:30:06,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-10-06 00:30:06,723 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:07,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:07,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/45d08b7e29871ecff0386975c975dacd0865bcc4 HTTP/1.1" 200 None 2025-10-06 00:30:08,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/45d08b7e29871ecff0386975c975dacd0865bcc4?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:08,238 [ scc.repo] DEBUG - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-10-06 00:30:08,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/499 HTTP/1.1" 200 None 2025-10-06 00:30:08,741 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:30:09,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-10-06 00:30:09,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:10,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:10,957 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc HTTP/1.1" 200 None 2025-10-06 00:30:11,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/b19bbac5f17ff2b53ba573ca58108d28d2d86bcc?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:11,373 [ scc.repo] DEBUG - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-10-06 00:30:11,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497 HTTP/1.1" 200 None 2025-10-06 00:30:12,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/497/comments HTTP/1.1" 200 None 2025-10-06 00:30:12,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2025-10-06 00:30:13,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2025-10-06 00:30:13,748 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-10-06 00:30:14,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:14,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9 HTTP/1.1" 200 None 2025-10-06 00:30:15,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:15,172 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2025-10-06 00:30:15,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465 HTTP/1.1" 200 None 2025-10-06 00:30:16,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/465/comments HTTP/1.1" 200 None 2025-10-06 00:30:16,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-10-06 00:30:17,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:17,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/63dd9266a853ff522780066673d0ae2b770238cd HTTP/1.1" 200 None 2025-10-06 00:30:18,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/63dd9266a853ff522780066673d0ae2b770238cd?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:18,043 [ scc.repo] DEBUG - PR 465 will-moore 'Save as Figure' 2025-10-06 00:30:18,517 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460 HTTP/1.1" 200 None 2025-10-06 00:30:18,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/460/comments HTTP/1.1" 200 None 2025-10-06 00:30:19,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-10-06 00:30:19,908 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:20,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/dada2c46211e3bf8015cc47464ab2761ef74ca30 HTTP/1.1" 200 None 2025-10-06 00:30:20,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/dada2c46211e3bf8015cc47464ab2761ef74ca30?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:20,807 [ scc.repo] DEBUG - PR 460 will-moore 'Channel min spinner fix' 2025-10-06 00:30:21,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227 HTTP/1.1" 200 None 2025-10-06 00:30:21,726 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/227/comments HTTP/1.1" 200 None 2025-10-06 00:30:22,237 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97 HTTP/1.1" 200 None 2025-10-06 00:30:22,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:23,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a081a9f2892763bd49a7ad7ba425965150e76f97/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:23,209 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:30:23,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-10-06 00:30:23,210 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:23,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:23,212 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:30:23,214 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:30:23,214 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:30:23,217 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:30:23,224 [ scc.git] DEBUG Updating 7a798ce..bb94cf8 2025-10-06 00:30:24,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2025-10-06 00:30:24,081 [ scc.git] DEBUG Calling 'git fetch origin pull/460/head' 2025-10-06 00:30:24,386 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-10-06 00:30:24,386 [ scc.git] DEBUG * branch refs/pull/460/head -> FETCH_HEAD 2025-10-06 00:30:24,390 [ scc.git] DEBUG Calling 'git fetch origin pull/465/head' 2025-10-06 00:30:24,671 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-10-06 00:30:24,671 [ scc.git] DEBUG * branch refs/pull/465/head -> FETCH_HEAD 2025-10-06 00:30:24,675 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2025-10-06 00:30:24,955 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-10-06 00:30:24,955 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2025-10-06 00:30:24,959 [ scc.git] DEBUG Calling 'git fetch origin pull/499/head' 2025-10-06 00:30:25,244 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-10-06 00:30:25,244 [ scc.git] DEBUG * branch refs/pull/499/head -> FETCH_HEAD 2025-10-06 00:30:25,248 [ scc.git] DEBUG Calling 'git fetch origin pull/502/head' 2025-10-06 00:30:25,533 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2025-10-06 00:30:25,533 [ scc.git] DEBUG * branch refs/pull/502/head -> FETCH_HEAD 2025-10-06 00:30:25,537 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:30:25,537 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:25,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:25,540 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-10-06 00:30:25,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:25,547 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 460 (Channel min spinner fix) dada2c46211e3bf8015cc47464ab2761ef74ca30' 2025-10-06 00:30:25,558 [ scc.git] DEBUG Auto-merging src/model/image_info.js 2025-10-06 00:30:25,558 [ scc.git] DEBUG Auto-merging src/settings/channel-range.js 2025-10-06 00:30:25,559 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:25,562 [ scc.git] DEBUG src/model/image_info.js | 7 ++++--- 2025-10-06 00:30:25,562 [ scc.git] DEBUG src/settings/channel-range.js | 4 +++- 2025-10-06 00:30:25,562 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 4 deletions(-) 2025-10-06 00:30:25,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:25,708 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...63dd9266a853ff522780066673d0ae2b770238cd' 2025-10-06 00:30:25,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:25,715 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 465 (Save as Figure) 63dd9266a853ff522780066673d0ae2b770238cd' 2025-10-06 00:30:25,732 [ scc.git] DEBUG Auto-merging plugin/omero_iviewer/views.py 2025-10-06 00:30:25,732 [ scc.git] DEBUG Auto-merging src/app/context.js 2025-10-06 00:30:25,732 [ scc.git] DEBUG Auto-merging src/utils/constants.js 2025-10-06 00:30:25,733 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2025-10-06 00:30:25,733 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:25,737 [ scc.git] DEBUG plugin/omero_iviewer/views.py | 17 +++- 2025-10-06 00:30:25,737 [ scc.git] DEBUG src/app/context.js | 6 +- 2025-10-06 00:30:25,737 [ scc.git] DEBUG src/app/header.html | 5 + 2025-10-06 00:30:25,737 [ scc.git] DEBUG src/app/header.js | 45 ++++++++- 2025-10-06 00:30:25,737 [ scc.git] DEBUG src/utils/constants.js | 6 ++ 2025-10-06 00:30:25,738 [ scc.git] DEBUG src/utils/figure.js | 217 ++++++++++++++++++++++++++++++++++++++++++ 2025-10-06 00:30:25,738 [ scc.git] DEBUG 6 files changed, 290 insertions(+), 6 deletions(-) 2025-10-06 00:30:25,738 [ scc.git] DEBUG create mode 100644 src/utils/figure.js 2025-10-06 00:30:26,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:26,097 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2025-10-06 00:30:26,102 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:26,105 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2025-10-06 00:30:26,115 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2025-10-06 00:30:26,116 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:26,119 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2025-10-06 00:30:26,119 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2025-10-06 00:30:26,119 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2025-10-06 00:30:26,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:26,510 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-10-06 00:30:26,516 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:26,518 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) b19bbac5f17ff2b53ba573ca58108d28d2d86bcc' 2025-10-06 00:30:26,532 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:26,542 [ scc.git] DEBUG package-lock.json | 322 +++++++++++++++++++++++++++--------------------------- 2025-10-06 00:30:26,542 [ scc.git] DEBUG package.json | 2 +- 2025-10-06 00:30:26,542 [ scc.git] DEBUG 2 files changed, 163 insertions(+), 161 deletions(-) 2025-10-06 00:30:26,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:26,996 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-10-06 00:30:27,002 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:27,004 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 502 (Bump serialize-javascript and mocha) 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-10-06 00:30:27,038 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:30:27,039 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2025-10-06 00:30:27,039 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:27,039 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:27,042 [ scc.git] DEBUG Calling 'git reset --hard 6100e133d3c30ffc1576d2413c0a3ed05cb89437' 2025-10-06 00:30:27,048 [ scc.git] DEBUG HEAD is now at 6100e13 merge master -Dorg -Ssuccess-only: PR 499 (Bump nanoid and mocha) 2025-10-06 00:30:27,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:27,385 [ scc.git] DEBUG Calling 'git merge-base bb94cf8da960e3283090038b04432f301560f5e4 45d08b7e29871ecff0386975c975dacd0865bcc4' 2025-10-06 00:30:27,387 [ scc.git] DEBUG Calling 'git diff --name-only 7a798ceeb3926d049d73788555fb63269a071052..bb94cf8da960e3283090038b04432f301560f5e4' 2025-10-06 00:30:27,390 [ scc.git] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #499 dependabot[bot] 'Bump nanoid and mocha' - package-lock.json --conflicts 2025-10-06 00:30:27,392 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:27,392 [ scc.git] DEBUG Not adding comment to issue #502, already --conflicts. 2025-10-06 00:30:27,392 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:30:27,429 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:27,429 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:27,431 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:30:27,468 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:30:27,474 [ scc.git] DEBUG has no local changes 2025-10-06 00:30:27,474 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:30:27,483 [ scc.git] DEBUG [detached HEAD 3ddf044] merge master -Dorg -Ssuccess-only 2025-10-06 00:30:27,484 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:30:27,484 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:30:27,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2025-10-06 00:30:28,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2025-10-06 00:30:28,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2025-10-06 00:30:28,826 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:30:29,338 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-10-06 00:30:29,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:30,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:30,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99 HTTP/1.1" 200 None 2025-10-06 00:30:31,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:31,229 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:30:31,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2025-10-06 00:30:32,198 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-10-06 00:30:32,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:33,153 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d HTTP/1.1" 200 None 2025-10-06 00:30:33,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:33,557 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:30:34,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2025-10-06 00:30:34,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2025-10-06 00:30:34,998 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-10-06 00:30:35,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:35,854 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322 HTTP/1.1" 200 None 2025-10-06 00:30:36,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:36,489 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient' 2025-10-06 00:30:36,489 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:30:36,489 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-10-06 00:30:36,489 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:36,489 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:36,492 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:30:36,494 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:30:36,494 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:30:36,496 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:30:36,499 [ scc.git] DEBUG Already up to date. 2025-10-06 00:30:36,499 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2025-10-06 00:30:36,774 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-10-06 00:30:36,775 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2025-10-06 00:30:36,778 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2025-10-06 00:30:37,058 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-10-06 00:30:37,058 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2025-10-06 00:30:37,062 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2025-10-06 00:30:37,342 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2025-10-06 00:30:37,342 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2025-10-06 00:30:37,346 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:30:37,346 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:37,346 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:37,348 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-10-06 00:30:37,352 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:37,354 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322' 2025-10-06 00:30:37,362 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:37,365 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++ 2025-10-06 00:30:37,366 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 --------------------- 2025-10-06 00:30:37,366 [ scc.git] DEBUG requirements.txt | 2 +- 2025-10-06 00:30:37,366 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-) 2025-10-06 00:30:37,366 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html 2025-10-06 00:30:37,366 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2025-10-06 00:30:37,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:37,499 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-10-06 00:30:37,502 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:37,504 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2025-10-06 00:30:37,512 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:30:37,515 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:30:37,515 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:30:37,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:37,892 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-10-06 00:30:37,896 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:37,898 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-10-06 00:30:37,905 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2025-10-06 00:30:37,906 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2025-10-06 00:30:37,906 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:37,906 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:37,908 [ scc.git] DEBUG Calling 'git reset --hard 0cabbcb5c2f91baf7d85af2ad718374760d58860' 2025-10-06 00:30:37,912 [ scc.git] DEBUG HEAD is now at 0cabbcb merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2025-10-06 00:30:38,280 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:38,281 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2025-10-06 00:30:38,283 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2025-10-06 00:30:38,285 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2025-10-06 00:30:38,287 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:38,287 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2025-10-06 00:30:38,287 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:30:38,323 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:38,323 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:38,325 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:30:38,359 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:30:38,362 [ scc.git] DEBUG has no local changes 2025-10-06 00:30:38,362 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:30:38,368 [ scc.git] DEBUG [detached HEAD 65e9042] merge master -Dorg -Ssuccess-only 2025-10-06 00:30:38,368 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:30:38,368 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:30:38,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2025-10-06 00:30:39,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2025-10-06 00:30:39,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2025-10-06 00:30:40,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-10-06 00:30:40,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:41,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7 HTTP/1.1" 200 None 2025-10-06 00:30:41,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:41,725 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-10-06 00:30:42,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2025-10-06 00:30:42,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2025-10-06 00:30:43,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-10-06 00:30:43,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:44,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102 HTTP/1.1" 200 None 2025-10-06 00:30:44,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:44,514 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-10-06 00:30:44,514 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:30:44,514 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-10-06 00:30:44,514 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:44,514 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:44,517 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:30:44,519 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:30:44,519 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:30:44,521 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:30:44,527 [ scc.git] DEBUG Updating 3cd120c..55060a2 2025-10-06 00:30:45,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2025-10-06 00:30:45,231 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2025-10-06 00:30:45,523 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-10-06 00:30:45,523 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2025-10-06 00:30:45,527 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2025-10-06 00:30:45,805 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2025-10-06 00:30:45,806 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2025-10-06 00:30:45,809 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:30:45,810 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:45,810 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:45,812 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-10-06 00:30:45,816 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:45,818 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-10-06 00:30:45,830 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2025-10-06 00:30:45,830 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2025-10-06 00:30:45,830 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-10-06 00:30:45,830 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-10-06 00:30:45,830 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:45,830 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:45,832 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-10-06 00:30:45,836 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-10-06 00:30:46,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:46,128 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2025-10-06 00:30:46,131 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..55060a256e99567f21e64ff3c225d933fba1c501' 2025-10-06 00:30:46,134 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/cli.py - src/omero_metadata/populate.py --conflicts 2025-10-06 00:30:46,136 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:46,136 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2025-10-06 00:30:46,136 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2025-10-06 00:30:46,140 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:46,142 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2025-10-06 00:30:46,155 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2025-10-06 00:30:46,155 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2025-10-06 00:30:46,155 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2025-10-06 00:30:46,155 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:30:46,155 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:30:46,158 [ scc.git] DEBUG Calling 'git reset --hard 55060a256e99567f21e64ff3c225d933fba1c501' 2025-10-06 00:30:46,162 [ scc.git] DEBUG HEAD is now at 55060a2 Merge pull request #90 from will-moore/pypi_release_action 2025-10-06 00:30:46,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:30:46,521 [ scc.git] DEBUG Calling 'git merge-base 55060a256e99567f21e64ff3c225d933fba1c501 78e55539b68e351ed5ef202854718b49a37729a7' 2025-10-06 00:30:46,525 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..55060a256e99567f21e64ff3c225d933fba1c501' 2025-10-06 00:30:46,527 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2025-10-06 00:30:46,529 [ scc.config] DEBUG Found github.token 2025-10-06 00:30:46,529 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2025-10-06 00:30:46,529 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:30:46,565 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:46,565 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:46,567 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:30:46,601 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:30:46,604 [ scc.git] DEBUG has no local changes 2025-10-06 00:30:46,604 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:30:46,610 [ scc.git] DEBUG [detached HEAD e7c75a1] merge master -Dorg -Ssuccess-only 2025-10-06 00:30:46,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:30:46,611 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:30:47,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2025-10-06 00:30:47,630 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2025-10-06 00:30:48,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-10-06 00:30:48,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:49,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:49,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0 HTTP/1.1" 200 None 2025-10-06 00:30:50,125 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:50,126 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:30:50,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2025-10-06 00:30:50,605 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:30:51,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-10-06 00:30:51,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:52,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:52,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80 HTTP/1.1" 200 None 2025-10-06 00:30:53,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:53,152 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-10-06 00:30:53,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2025-10-06 00:30:53,641 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:30:54,206 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-10-06 00:30:54,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:30:55,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:30:55,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0 HTTP/1.1" 200 None 2025-10-06 00:30:56,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:30:56,193 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-10-06 00:30:56,664 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2025-10-06 00:30:57,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2025-10-06 00:30:57,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2025-10-06 00:30:58,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2025-10-06 00:30:58,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2025-10-06 00:30:59,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2025-10-06 00:30:59,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2025-10-06 00:30:59,495 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:30:59,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-10-06 00:30:59,495 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:30:59,495 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:30:59,497 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:30:59,500 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:30:59,500 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:30:59,503 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:30:59,506 [ scc.git] DEBUG Already up to date. 2025-10-06 00:30:59,506 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2025-10-06 00:30:59,790 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-10-06 00:30:59,790 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2025-10-06 00:30:59,794 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2025-10-06 00:31:00,080 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-10-06 00:31:00,080 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2025-10-06 00:31:00,084 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2025-10-06 00:31:00,367 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2025-10-06 00:31:00,367 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2025-10-06 00:31:00,371 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:00,371 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:00,371 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:00,373 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2025-10-06 00:31:00,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:00,377 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2025-10-06 00:31:00,384 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:00,387 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2025-10-06 00:31:00,387 [ scc.git] DEBUG package.json | 2 +- 2025-10-06 00:31:00,387 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2025-10-06 00:31:00,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:00,524 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2025-10-06 00:31:00,526 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:00,528 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2025-10-06 00:31:00,537 [ scc.git] DEBUG Auto-merging package-lock.json 2025-10-06 00:31:00,537 [ scc.git] DEBUG Auto-merging package.json 2025-10-06 00:31:00,538 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:00,541 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2025-10-06 00:31:00,541 [ scc.git] DEBUG package.json | 2 +- 2025-10-06 00:31:00,541 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2025-10-06 00:31:00,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:00,926 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-10-06 00:31:00,929 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:00,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2025-10-06 00:31:00,939 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:00,941 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:00,941 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:01,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:01,317 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:01,353 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:01,353 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:01,355 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:01,390 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:01,394 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:01,394 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:01,399 [ scc.git] DEBUG [detached HEAD 139ef10] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:01,400 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:01,400 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:01,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2025-10-06 00:31:02,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2025-10-06 00:31:02,264 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:02,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-10-06 00:31:03,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:03,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:04,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e HTTP/1.1" 200 None 2025-10-06 00:31:04,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:04,778 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:04,778 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:04,778 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-10-06 00:31:04,778 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:04,778 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:04,781 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:04,783 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:04,783 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:04,786 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:04,788 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:04,788 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2025-10-06 00:31:05,078 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2025-10-06 00:31:05,078 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2025-10-06 00:31:05,082 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:05,082 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:05,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:05,084 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2025-10-06 00:31:05,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:05,089 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2025-10-06 00:31:05,095 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:05,098 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:05,098 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:05,230 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:05,231 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:05,266 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:05,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:05,268 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:05,302 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:05,305 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:05,305 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:05,310 [ scc.git] DEBUG [detached HEAD a1ad2f7] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:05,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:05,310 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:05,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2025-10-06 00:31:06,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/34 HTTP/1.1" 200 None 2025-10-06 00:31:06,269 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:06,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-10-06 00:31:07,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:07,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:08,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-10-06 00:31:08,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/149bb248277256d589ea0db597c04739e8134301?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:09,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301 HTTP/1.1" 200 None 2025-10-06 00:31:09,652 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/149bb248277256d589ea0db597c04739e8134301/status HTTP/1.1" 200 None 2025-10-06 00:31:09,653 [ scc.repo] DEBUG - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:10,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33 HTTP/1.1" 200 None 2025-10-06 00:31:10,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/33/comments HTTP/1.1" 200 None 2025-10-06 00:31:11,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-10-06 00:31:11,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:12,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:12,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-10-06 00:31:13,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/statuses/1122baea98746effd4eb59deed25870f673ce3d3?per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:13,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3 HTTP/1.1" 200 None 2025-10-06 00:31:14,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/commits/1122baea98746effd4eb59deed25870f673ce3d3/status HTTP/1.1" 200 None 2025-10-06 00:31:14,177 [ scc.repo] DEBUG - PR 33 jo-mueller 'Add roi to array functions' 2025-10-06 00:31:14,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2025-10-06 00:31:14,687 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:14,687 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-10-06 00:31:14,687 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:14,687 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:14,690 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:14,692 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:14,692 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:14,694 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:14,697 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:14,697 [ scc.git] DEBUG Calling 'git fetch origin pull/33/head' 2025-10-06 00:31:14,992 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-10-06 00:31:14,992 [ scc.git] DEBUG * branch refs/pull/33/head -> FETCH_HEAD 2025-10-06 00:31:14,996 [ scc.git] DEBUG Calling 'git fetch origin pull/34/head' 2025-10-06 00:31:15,268 [ scc.git] DEBUG From https://github.com/ome/omero-rois 2025-10-06 00:31:15,268 [ scc.git] DEBUG * branch refs/pull/34/head -> FETCH_HEAD 2025-10-06 00:31:15,272 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:15,272 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:15,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:15,274 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1122baea98746effd4eb59deed25870f673ce3d3' 2025-10-06 00:31:15,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:15,279 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 33 (Add roi to array functions) 1122baea98746effd4eb59deed25870f673ce3d3' 2025-10-06 00:31:15,285 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:15,288 [ scc.git] DEBUG setup.py | 4 +- 2025-10-06 00:31:15,288 [ scc.git] DEBUG src/omero_rois/__init__.py | 4 + 2025-10-06 00:31:15,288 [ scc.git] DEBUG src/omero_rois/library.py | 204 +++++++++++++++++++++++++++++++++++++++++++-- 2025-10-06 00:31:15,288 [ scc.git] DEBUG 3 files changed, 203 insertions(+), 9 deletions(-) 2025-10-06 00:31:15,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:15,443 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...149bb248277256d589ea0db597c04739e8134301' 2025-10-06 00:31:15,445 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:15,447 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 34 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 149bb248277256d589ea0db597c04739e8134301' 2025-10-06 00:31:15,454 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:15,456 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:15,456 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:15,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:15,830 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:15,866 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:15,866 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:15,868 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:15,902 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:15,905 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:15,905 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:15,910 [ scc.git] DEBUG [detached HEAD 887cdc1] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:15,911 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:15,911 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:16,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2025-10-06 00:31:16,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2025-10-06 00:31:16,960 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:17,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-10-06 00:31:18,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:18,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:19,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa HTTP/1.1" 200 None 2025-10-06 00:31:19,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:19,600 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:20,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2025-10-06 00:31:20,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2025-10-06 00:31:21,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-10-06 00:31:21,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:22,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d HTTP/1.1" 200 None 2025-10-06 00:31:22,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:22,610 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2025-10-06 00:31:22,610 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:22,610 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-10-06 00:31:22,610 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:22,610 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:22,612 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:22,614 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:22,614 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:22,617 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:22,619 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:22,619 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-10-06 00:31:22,907 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-10-06 00:31:22,907 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-10-06 00:31:22,910 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-10-06 00:31:23,186 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2025-10-06 00:31:23,187 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-10-06 00:31:23,191 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:23,191 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:23,191 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:23,193 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-10-06 00:31:23,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:23,198 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-10-06 00:31:23,205 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG Auto-merging setup.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2025-10-06 00:31:23,205 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:31:23,205 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:31:23,208 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2025-10-06 00:31:23,211 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2025-10-06 00:31:23,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:23,351 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2025-10-06 00:31:23,354 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2025-10-06 00:31:23,356 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/views.py - omero_signup/urls.py - setup.py - omero_signup/signup_settings.py --conflicts 2025-10-06 00:31:23,358 [ scc.config] DEBUG Found github.token 2025-10-06 00:31:23,358 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2025-10-06 00:31:23,358 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-10-06 00:31:23,361 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:23,363 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2025-10-06 00:31:23,369 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:23,372 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:23,372 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:23,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:23,749 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:23,784 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:23,784 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:23,786 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:23,820 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:23,824 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:23,824 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:23,829 [ scc.git] DEBUG [detached HEAD 14ae217] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:23,829 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:23,829 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:24,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2025-10-06 00:31:25,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/76 HTTP/1.1" 200 None 2025-10-06 00:31:25,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-10-06 00:31:26,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:26,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:27,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6 HTTP/1.1" 200 None 2025-10-06 00:31:27,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:27,705 [ scc.repo] DEBUG - PR 76 will-moore 'Run cli deps' 2025-10-06 00:31:28,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2025-10-06 00:31:28,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2025-10-06 00:31:29,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623 HTTP/1.1" 200 None 2025-10-06 00:31:29,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:30,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:30,673 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73 HTTP/1.1" 200 None 2025-10-06 00:31:31,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/73/comments HTTP/1.1" 200 None 2025-10-06 00:31:31,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12 HTTP/1.1" 200 None 2025-10-06 00:31:32,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/12/comments HTTP/1.1" 200 None 2025-10-06 00:31:32,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-10-06 00:31:33,009 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:33,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/425319051224e8481afc40083fd9b5db4bc99928 HTTP/1.1" 200 None 2025-10-06 00:31:33,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/425319051224e8481afc40083fd9b5db4bc99928?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:33,955 [ scc.repo] DEBUG - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-10-06 00:31:33,955 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:33,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-10-06 00:31:33,955 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:33,955 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:33,958 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:33,960 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:33,960 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:33,962 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:33,965 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:33,965 [ scc.git] DEBUG Calling 'git fetch origin pull/12/head' 2025-10-06 00:31:34,252 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-10-06 00:31:34,252 [ scc.git] DEBUG * branch refs/pull/12/head -> FETCH_HEAD 2025-10-06 00:31:34,257 [ scc.git] DEBUG Calling 'git fetch origin pull/76/head' 2025-10-06 00:31:34,540 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2025-10-06 00:31:34,540 [ scc.git] DEBUG * branch refs/pull/76/head -> FETCH_HEAD 2025-10-06 00:31:34,545 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:34,545 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:34,545 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:34,547 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...425319051224e8481afc40083fd9b5db4bc99928' 2025-10-06 00:31:34,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:34,553 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 12 (IDR: use downloaded ansible templates & variables to configure infra) 425319051224e8481afc40083fd9b5db4bc99928' 2025-10-06 00:31:34,563 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr-compose.yml | 66 ++++++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr-haproxy.yml | 58 +++++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/40-ansible.sh | 7 ++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/70-reset-password.sh | 1 + 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/default.conf | 1 + 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/example_ssl.conf | 1 + 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cache.conf | 53 +++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/proxy-cachebuster.conf | 114 ++++++++++++++++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/proxy-default.conf | 135 +++++++++++++++++++++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/proxy-omeroreadwrite.conf | 115 ++++++++++++++++++++++++ 2025-10-06 00:31:34,566 [ scc.git] DEBUG idr/nginx/conf.d/proxy-redirect.conf | 15 ++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/conf.d/proxy-upstream.conf | 13 +++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v0.conf | 26 ++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v1.conf | 30 +++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/conf.d/proxy-v2.conf | 30 +++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/conf.d/proxy-websockets.conf | 6 ++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/nginx/nginx.conf | 53 +++++++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/omero/Dockerfile | 3 + 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/omero/playbook.yml | 41 +++++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/redirect/Dockerfile | 6 ++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/web/Dockerfile | 5 ++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG idr/web/playbook.yml | 45 ++++++++++ 2025-10-06 00:31:34,567 [ scc.git] DEBUG 22 files changed, 824 insertions(+) 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100644 idr-compose.yml 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100644 idr-haproxy.yml 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100755 idr/40-ansible.sh 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100755 idr/70-reset-password.sh 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/default.conf 2025-10-06 00:31:34,567 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/example_ssl.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cache.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-cachebuster.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-default.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-omeroreadwrite.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-redirect.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-upstream.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v0.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v1.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-v2.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/conf.d/proxy-websockets.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/nginx/nginx.conf 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/omero/Dockerfile 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/omero/playbook.yml 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/redirect/Dockerfile 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/web/Dockerfile 2025-10-06 00:31:34,568 [ scc.git] DEBUG create mode 100644 idr/web/playbook.yml 2025-10-06 00:31:34,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:34,723 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-10-06 00:31:34,727 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:34,729 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 76 (Run cli deps) bd0bdd4d987dbcec28e1780f65ad3bbbe18d1aa6' 2025-10-06 00:31:34,737 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:34,739 [ scc.git] DEBUG docker | 1 + 2025-10-06 00:31:34,739 [ scc.git] DEBUG 1 file changed, 1 insertion(+) 2025-10-06 00:31:35,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:35,143 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:35,179 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:35,179 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:35,180 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:35,214 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:35,218 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:35,218 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:35,223 [ scc.git] DEBUG [detached HEAD 5ea3e5a] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:35,223 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:35,224 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:35,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2025-10-06 00:31:36,104 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2025-10-06 00:31:36,104 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:36,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-10-06 00:31:37,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:37,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:38,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea HTTP/1.1" 200 None 2025-10-06 00:31:38,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:38,467 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:38,467 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:38,468 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-10-06 00:31:38,468 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:38,468 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:38,470 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:38,472 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:38,472 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:38,474 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:38,477 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:38,477 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2025-10-06 00:31:38,761 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2025-10-06 00:31:38,761 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2025-10-06 00:31:38,765 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:38,765 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:38,765 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:38,767 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-10-06 00:31:38,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:38,772 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2025-10-06 00:31:38,778 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:38,780 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:38,780 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:38,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:38,917 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:38,953 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:38,953 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:38,955 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:38,989 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:38,991 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:38,991 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:38,996 [ scc.git] DEBUG [detached HEAD 2b96f72] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:38,997 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:38,997 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:39,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2025-10-06 00:31:39,894 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2025-10-06 00:31:39,895 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:40,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-10-06 00:31:41,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:41,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:42,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902 HTTP/1.1" 200 None 2025-10-06 00:31:42,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:42,403 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:42,404 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:42,404 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-10-06 00:31:42,404 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:42,404 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:42,406 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:42,408 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:42,408 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:42,411 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:42,417 [ scc.git] DEBUG Updating deab817..160d894 2025-10-06 00:31:43,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2025-10-06 00:31:43,090 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2025-10-06 00:31:43,366 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2025-10-06 00:31:43,366 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2025-10-06 00:31:43,370 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:43,370 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:43,370 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:43,372 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-10-06 00:31:43,374 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:43,376 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2025-10-06 00:31:43,383 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:43,385 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:43,385 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:43,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:43,522 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:43,558 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:43,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:43,560 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:43,594 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:43,597 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:43,597 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:43,602 [ scc.git] DEBUG [detached HEAD 02b43e9] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:43,603 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:43,603 [ scc.git] INFO Overriding base-branch from master to main 2025-10-06 00:31:43,603 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:44,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2025-10-06 00:31:44,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2025-10-06 00:31:44,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2025-10-06 00:31:45,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-10-06 00:31:45,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:46,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:46,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc HTTP/1.1" 200 None 2025-10-06 00:31:47,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:47,400 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2025-10-06 00:31:47,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2025-10-06 00:31:48,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2025-10-06 00:31:49,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2025-10-06 00:31:49,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-10-06 00:31:50,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:50,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8 HTTP/1.1" 200 None 2025-10-06 00:31:51,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:51,014 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-10-06 00:31:51,014 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:51,014 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-10-06 00:31:51,014 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:51,015 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:51,017 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2025-10-06 00:31:51,019 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:51,019 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2025-10-06 00:31:51,022 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2025-10-06 00:31:51,028 [ scc.git] DEBUG Updating 8f3c313..00e0207 2025-10-06 00:31:51,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2025-10-06 00:31:51,722 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2025-10-06 00:31:52,008 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-10-06 00:31:52,008 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2025-10-06 00:31:52,013 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2025-10-06 00:31:52,293 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2025-10-06 00:31:52,293 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2025-10-06 00:31:52,296 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:52,297 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:52,297 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:52,299 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-10-06 00:31:52,302 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:52,303 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-10-06 00:31:52,310 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2025-10-06 00:31:52,310 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2025-10-06 00:31:52,311 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-10-06 00:31:52,311 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:31:52,311 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:31:52,313 [ scc.git] DEBUG Calling 'git reset --hard 00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-10-06 00:31:52,317 [ scc.git] DEBUG HEAD is now at 00e0207 Merge pull request #20 from will-moore/zarr_python_v3 2025-10-06 00:31:52,455 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:52,455 [ scc.git] DEBUG Calling 'git merge-base 00e02072dc29b04eba14c080ca8a0175a1499c15 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2025-10-06 00:31:52,457 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..00e02072dc29b04eba14c080ca8a0175a1499c15' 2025-10-06 00:31:52,460 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2025-10-06 00:31:52,462 [ scc.config] DEBUG Found github.token 2025-10-06 00:31:52,462 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2025-10-06 00:31:52,462 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-10-06 00:31:52,465 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:52,466 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2025-10-06 00:31:52,474 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2025-10-06 00:31:52,474 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:52,477 [ scc.git] DEBUG README.rst | 3 + 2025-10-06 00:31:52,477 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2025-10-06 00:31:52,477 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2025-10-06 00:31:52,477 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2025-10-06 00:31:52,477 [ scc.git] DEBUG setup.py | 5 +- 2025-10-06 00:31:52,477 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2025-10-06 00:31:52,477 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2025-10-06 00:31:52,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:52,837 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:52,873 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:52,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:52,875 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:52,910 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:52,913 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:52,913 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:52,918 [ scc.git] DEBUG [detached HEAD e0fa55a] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:52,918 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:52,918 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:53,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2025-10-06 00:31:53,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2025-10-06 00:31:53,871 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:54,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-10-06 00:31:54,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:55,459 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:55,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9 HTTP/1.1" 200 None 2025-10-06 00:31:56,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:31:56,388 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:31:56,388 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:31:56,388 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-10-06 00:31:56,388 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:56,388 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:56,390 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:31:56,392 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:31:56,392 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:31:56,395 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:31:56,397 [ scc.git] DEBUG Already up to date. 2025-10-06 00:31:56,398 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2025-10-06 00:31:56,689 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2025-10-06 00:31:56,689 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2025-10-06 00:31:56,693 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:31:56,693 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:56,693 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:56,695 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-10-06 00:31:56,698 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:56,700 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2025-10-06 00:31:56,706 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:31:56,708 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:31:56,708 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:31:56,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:31:56,842 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:31:56,877 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:31:56,878 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:31:56,879 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:31:56,913 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:31:56,916 [ scc.git] DEBUG has no local changes 2025-10-06 00:31:56,916 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:31:56,922 [ scc.git] DEBUG [detached HEAD 96a0e47] merge master -Dorg -Ssuccess-only 2025-10-06 00:31:56,922 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:31:56,922 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:31:57,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2025-10-06 00:31:57,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2025-10-06 00:31:57,789 [ scc.repo] DEBUG # ... Include label: dependencies 2025-10-06 00:31:58,435 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-10-06 00:31:58,918 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:31:59,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:31:59,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478 HTTP/1.1" 200 None 2025-10-06 00:32:00,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:32:00,278 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:00,278 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:32:00,278 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-10-06 00:32:00,278 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:00,278 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:00,280 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:32:00,282 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:32:00,282 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:32:00,285 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:32:00,287 [ scc.git] DEBUG Already up to date. 2025-10-06 00:32:00,288 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2025-10-06 00:32:00,579 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2025-10-06 00:32:00,579 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2025-10-06 00:32:00,583 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:32:00,583 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:00,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:00,585 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-10-06 00:32:00,588 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:00,590 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2025-10-06 00:32:00,596 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:32:00,599 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2025-10-06 00:32:00,599 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2025-10-06 00:32:00,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:00,735 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:32:00,771 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:00,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:00,773 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:32:00,808 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:32:00,811 [ scc.git] DEBUG has no local changes 2025-10-06 00:32:00,811 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:32:00,816 [ scc.git] DEBUG [detached HEAD a4eca3d] merge master -Dorg -Ssuccess-only 2025-10-06 00:32:00,817 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:00,817 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:32:01,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 None 2025-10-06 00:32:01,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100 HTTP/1.1" 200 None 2025-10-06 00:32:02,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/issues/100/comments HTTP/1.1" 200 None 2025-10-06 00:32:02,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-10-06 00:32:03,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:32:03,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/commits/b4abacf0cb9b7aee150761d320bdbb80762cd6e7 HTTP/1.1" 200 None 2025-10-06 00:32:03,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/statuses/b4abacf0cb9b7aee150761d320bdbb80762cd6e7?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:32:03,993 [ scc.repo] DEBUG - PR 100 dominikl 'Run tests properly' 2025-10-06 00:32:03,993 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:32:03,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-10-06 00:32:03,993 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:03,993 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:03,996 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2025-10-06 00:32:03,998 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:32:03,998 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2025-10-06 00:32:04,000 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2025-10-06 00:32:04,003 [ scc.git] DEBUG Already up to date. 2025-10-06 00:32:04,004 [ scc.git] DEBUG Calling 'git fetch origin pull/100/head' 2025-10-06 00:32:04,293 [ scc.git] DEBUG From https://github.com/ome/rOMERO-gateway 2025-10-06 00:32:04,293 [ scc.git] DEBUG * branch refs/pull/100/head -> FETCH_HEAD 2025-10-06 00:32:04,296 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:32:04,296 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:04,296 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:04,298 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-10-06 00:32:04,301 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:04,303 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 100 (Run tests properly) b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-10-06 00:32:04,311 [ scc.git] DEBUG Auto-merging Dockerfile 2025-10-06 00:32:04,311 [ scc.git] DEBUG CONFLICT (content): Merge conflict in Dockerfile 2025-10-06 00:32:04,311 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:32:04,311 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:32:04,314 [ scc.git] DEBUG Calling 'git reset --hard 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-10-06 00:32:04,318 [ scc.git] DEBUG HEAD is now at 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2025-10-06 00:32:04,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:04,482 [ scc.git] DEBUG Calling 'git merge-base 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 b4abacf0cb9b7aee150761d320bdbb80762cd6e7' 2025-10-06 00:32:04,484 [ scc.git] DEBUG Calling 'git diff --name-only 8b424d2d21f70d07729c4da38a9241b9a9f483be..7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9' 2025-10-06 00:32:04,487 [ scc.git] INFO - PR 100 dominikl 'Run tests properly' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - Upstream changes - Dockerfile --conflicts 2025-10-06 00:32:04,489 [ scc.config] DEBUG Found github.token 2025-10-06 00:32:04,489 [ scc.git] DEBUG Not adding comment to issue #100, already --conflicts. 2025-10-06 00:32:04,489 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:32:04,524 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:04,524 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:04,526 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:32:04,561 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:32:04,564 [ scc.git] DEBUG has no local changes 2025-10-06 00:32:04,564 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:32:04,569 [ scc.git] DEBUG [detached HEAD 9495d2a] merge master -Dorg -Ssuccess-only 2025-10-06 00:32:04,570 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:04,570 [ scc.git] INFO Overriding base-branch from master to develop 2025-10-06 00:32:04,570 [ scc.repo] DEBUG ## PRs found: 2025-10-06 00:32:05,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2025-10-06 00:32:05,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223 HTTP/1.1" 200 None 2025-10-06 00:32:06,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/223/comments HTTP/1.1" 200 None 2025-10-06 00:32:06,492 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-10-06 00:32:06,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:32:07,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8/check-suites?app_id=15368 HTTP/1.1" 200 None 2025-10-06 00:32:07,943 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/d8b2bbd6f5066de883a41ba5338662d60472b0d8 HTTP/1.1" 200 None 2025-10-06 00:32:08,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/d8b2bbd6f5066de883a41ba5338662d60472b0d8?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:32:08,348 [ scc.repo] DEBUG - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-10-06 00:32:08,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202 HTTP/1.1" 200 None 2025-10-06 00:32:09,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/202/comments HTTP/1.1" 200 None 2025-10-06 00:32:09,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-10-06 00:32:10,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2025-10-06 00:32:10,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/1fd6030669613cdb8879cfe6395db8c820fdcf19 HTTP/1.1" 200 None 2025-10-06 00:32:11,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/1fd6030669613cdb8879cfe6395db8c820fdcf19?per_page=1 HTTP/1.1" 200 2 2025-10-06 00:32:11,024 [ scc.repo] DEBUG - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-10-06 00:32:11,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198 HTTP/1.1" 200 None 2025-10-06 00:32:11,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/198/comments HTTP/1.1" 200 None 2025-10-06 00:32:12,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103 HTTP/1.1" 200 None 2025-10-06 00:32:13,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/103/comments HTTP/1.1" 200 None 2025-10-06 00:32:13,086 [ scc.repo] DEBUG ## Branches found: 2025-10-06 00:32:13,086 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-10-06 00:32:13,087 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:13,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:13,089 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2025-10-06 00:32:13,091 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2025-10-06 00:32:13,091 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2025-10-06 00:32:13,094 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2025-10-06 00:32:13,103 [ scc.git] DEBUG Updating 4b4c755..03b9116 2025-10-06 00:32:13,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2025-10-06 00:32:14,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2025-10-06 00:32:15,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2025-10-06 00:32:15,001 [ scc.git] DEBUG Calling 'git fetch origin pull/202/head' 2025-10-06 00:32:15,307 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-10-06 00:32:15,307 [ scc.git] DEBUG * branch refs/pull/202/head -> FETCH_HEAD 2025-10-06 00:32:15,311 [ scc.git] DEBUG Calling 'git fetch origin pull/223/head' 2025-10-06 00:32:15,606 [ scc.git] DEBUG From https://github.com/ome/scripts 2025-10-06 00:32:15,606 [ scc.git] DEBUG * branch refs/pull/223/head -> FETCH_HEAD 2025-10-06 00:32:15,610 [ scc.git] DEBUG ## Unique users: [] 2025-10-06 00:32:15,610 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:15,610 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:15,612 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-10-06 00:32:15,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:15,619 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 202 (Add Plate support to KeyVal_to_csv.py) 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-10-06 00:32:15,628 [ scc.git] DEBUG CONFLICT (modify/delete): omero/annotation_scripts/KeyVal_to_csv.py deleted in HEAD and modified in 1fd6030669613cdb8879cfe6395db8c820fdcf19. Version 1fd6030669613cdb8879cfe6395db8c820fdcf19 of omero/annotation_scripts/KeyVal_to_csv.py left in tree. 2025-10-06 00:32:15,629 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2025-10-06 00:32:15,629 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2025-10-06 00:32:15,631 [ scc.git] DEBUG Calling 'git reset --hard 03b9116196e1a799dd18a666559613d912be01a5' 2025-10-06 00:32:15,634 [ scc.git] DEBUG HEAD is now at 03b9116 Merge pull request #228 from ome/dependabot/github_actions/dot-github/workflows/pypa/gh-action-pypi-publish-1.13.0 2025-10-06 00:32:15,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:15,783 [ scc.git] DEBUG Calling 'git merge-base 03b9116196e1a799dd18a666559613d912be01a5 1fd6030669613cdb8879cfe6395db8c820fdcf19' 2025-10-06 00:32:15,788 [ scc.git] DEBUG Calling 'git diff --name-only a90f59802f6752ad74badec5c0c1d6b0c9c43b15..03b9116196e1a799dd18a666559613d912be01a5' 2025-10-06 00:32:15,791 [ scc.git] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Conflicting PR. Removed from build [OMERO-plugins-push#549](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/consoleText) for more details. Possible conflicts: - Upstream changes - omero/annotation_scripts/KeyVal_to_csv.py --conflicts 2025-10-06 00:32:15,793 [ scc.config] DEBUG Found github.token 2025-10-06 00:32:15,793 [ scc.git] DEBUG Not adding comment to issue #202, already --conflicts. 2025-10-06 00:32:15,793 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-10-06 00:32:15,797 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:15,799 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 223 (don't attempt ROI stats on big images) d8b2bbd6f5066de883a41ba5338662d60472b0d8' 2025-10-06 00:32:15,807 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2025-10-06 00:32:15,810 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 9 ++++++++- 2025-10-06 00:32:15,810 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 1 deletion(-) 2025-10-06 00:32:16,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:16,184 [ scc.git] DEBUG Calling 'git submodule update' 2025-10-06 00:32:16,220 [ scc.git] DEBUG Get sha1 of %s 2025-10-06 00:32:16,220 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2025-10-06 00:32:16,222 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:32:16,258 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:32:16,261 [ scc.git] DEBUG has no local changes 2025-10-06 00:32:16,261 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:32:16,266 [ scc.git] DEBUG [detached HEAD 538bce0] merge master -Dorg -Ssuccess-only 2025-10-06 00:32:16,267 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:16,267 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2025-10-06 00:32:16,334 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2025-10-06 00:32:16,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:16,581 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2025-10-06 00:32:16,583 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2025-10-06 00:32:16,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:16,997 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2025-10-06 00:32:16,999 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2025-10-06 00:32:17,387 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:17,391 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2025-10-06 00:32:17,393 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2025-10-06 00:32:17,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:17,796 [ scc.config] DEBUG Found submodule.omero-figure.url 2025-10-06 00:32:18,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:18,187 [ scc.config] DEBUG Found submodule.omero-figure.branch 2025-10-06 00:32:18,189 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2025-10-06 00:32:18,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:18,583 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2025-10-06 00:32:18,585 [ scc.config] DEBUG Found submodule.omero-gallery.url 2025-10-06 00:32:18,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:18,975 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2025-10-06 00:32:18,977 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2025-10-06 00:32:19,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:19,363 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2025-10-06 00:32:19,365 [ scc.config] DEBUG Found submodule.omero-mapr.url 2025-10-06 00:32:19,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:19,742 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2025-10-06 00:32:19,744 [ scc.config] DEBUG Found submodule.omero-metadata.url 2025-10-06 00:32:20,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:20,160 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2025-10-06 00:32:20,162 [ scc.config] DEBUG Found submodule.omero-parade.url 2025-10-06 00:32:20,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:20,549 [ scc.config] DEBUG Found submodule.omero-parade.branch 2025-10-06 00:32:20,550 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2025-10-06 00:32:20,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:20,946 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2025-10-06 00:32:20,948 [ scc.config] DEBUG Found submodule.omero-rois.url 2025-10-06 00:32:21,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:21,367 [ scc.config] DEBUG Found submodule.omero-signup.url 2025-10-06 00:32:21,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:21,752 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2025-10-06 00:32:22,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:22,136 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2025-10-06 00:32:22,137 [ scc.config] DEBUG Found submodule.omero-upload.url 2025-10-06 00:32:22,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:22,549 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2025-10-06 00:32:22,951 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:22,957 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2025-10-06 00:32:23,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:23,346 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2025-10-06 00:32:23,348 [ scc.config] DEBUG Found submodule.omero-weberror.url 2025-10-06 00:32:23,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:23,737 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2025-10-06 00:32:23,739 [ scc.config] DEBUG Found submodule.omero-webtest.url 2025-10-06 00:32:24,118 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:24,122 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2025-10-06 00:32:24,124 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2025-10-06 00:32:24,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:24,514 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2025-10-06 00:32:24,515 [ scc.config] DEBUG Found submodule.scripts.url 2025-10-06 00:32:24,911 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2025-10-06 00:32:24,915 [ scc.config] DEBUG Found submodule.scripts.branch 2025-10-06 00:32:24,915 [ scc.git] DEBUG Calling 'git status --porcelain' 2025-10-06 00:32:24,992 [ scc.git] DEBUG has local changes 2025-10-06 00:32:24,992 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Already up to date. Merged PRs: - PR 59 will-moore 'Apply settings to Plate' - PR 69 dominikl 'Fix help text for impo/export commands' - PR 71 dominikl 'Escape slash character in image names' - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-zarr Excluded PRs: - PR 170 will-moore 'Use ome zarr models py' (stage: draft) - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) - PR 167 dominikl 'Add extinfo command' (stage: draft) - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..37ea700 Previously merged: - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' Conflicting PRs (not included): - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' - PR 181 will-moore 'Add labels support for import' - PR 182 will-moore 'Revert "Remove support for Plate import"' Repository: ome/omero-figure Excluded PRs: - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) - PR 619 will-moore 'OME-Zarr support' (stage: draft) - PR 543 will-moore 'Plate well labels' (exclude comment) Updating 9cc36cde..baab5c06 Previously merged: - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 600 Rdornier 'Label on rois' - PR 610 will-moore 'Add docs/contributing.rst' - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' Conflicting PRs (not included): - PR 637 Rdornier 'Fix scalebar position' - PR 643 Rdornier 'Shape scaling' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 508 will-moore 'Broadcast channel demo' (stage: draft) - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) - PR 227 will-moore 'Vectortile investigation' (status: failure) Updating 7a798ce..bb94cf8 Previously merged: - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 460 will-moore 'Channel min spinner fix' - PR 465 will-moore 'Save as Figure' - PR 471 will-moore 'Z projection disabled tooltip' - PR 499 dependabot[bot] 'Bump nanoid and mocha' Conflicting PRs (not included): - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) Already up to date. Merged PRs: - PR 74 will-moore 'mapr extension of webclient' - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..55060a2 Previously merged: - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Already up to date. Merged PRs: - PR 33 jo-mueller 'Add roi to array functions' - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) Already up to date. Merged PRs: - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' - PR 76 will-moore 'Run cli deps' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..00e0207 Previously merged: - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Conflicting PRs (not included): - PR 100 dominikl 'Run tests properly' Repository: ome/scripts Excluded PRs: - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) Updating 4b4c755..03b9116 Previously merged: - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 223 will-moore 'don't attempt ROI stats on big images' Conflicting PRs (not included): - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' Generated by OMERO-plugins-push#549 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/549/)' 2025-10-06 00:32:25,002 [ scc.git] DEBUG [detached HEAD 7b260a4] merge master -Dorg -Ssuccess-only 2025-10-06 00:32:25,002 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-) 2025-10-06 00:32:25,002 [ scc.merge] INFO Repository: ome/omero-plugins 2025-10-06 00:32:25,002 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,002 [ scc.merge] INFO 2025-10-06 00:32:25,002 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,002 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2025-10-06 00:32:25,002 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2025-10-06 00:32:25,002 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2025-10-06 00:32:25,002 [ scc.merge] INFO 2025-10-06 00:32:25,002 [ scc.merge] INFO Repository: ome/minimal-omero-client 2025-10-06 00:32:25,002 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,002 [ scc.merge] INFO 2025-10-06 00:32:25,002 [ scc.merge] INFO 2025-10-06 00:32:25,002 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2025-10-06 00:32:25,002 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,002 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2025-10-06 00:32:25,002 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,002 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Repository: ome/omero-cli-render 2025-10-06 00:32:25,003 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 70 dominikl 'Update changelog for 0.8.2 release' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 73 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2025-10-06 00:32:25,003 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 169 will-moore 'Remove ome-zarr-py dependency' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 167 dominikl 'Add extinfo command' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2025-10-06 00:32:25,003 [ scc.merge] INFO Updating 11d3587..37ea700 2025-10-06 00:32:25,003 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2025-10-06 00:32:25,003 [ scc.merge] INFO 2025-10-06 00:32:25,003 [ scc.merge] INFO Repository: ome/omero-figure 2025-10-06 00:32:25,003 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 641 Rdornier 'OMERO ROIs improvements : filtering visible and adding all' (user: Rdornier) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 619 will-moore 'OME-Zarr support' (stage: draft) 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 543 will-moore 'Plate well labels' (exclude comment) 2025-10-06 00:32:25,003 [ scc.merge] INFO Updating 9cc36cde..baab5c06 2025-10-06 00:32:25,003 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2025-10-06 00:32:25,003 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 642 dependabot[bot] 'Bump vite from 6.2.6 to 6.3.6' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 643 Rdornier 'Shape scaling' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2025-10-06 00:32:25,004 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Repository: ome/omero-gallery 2025-10-06 00:32:25,004 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,004 [ scc.merge] INFO Repository: ome/omero-iviewer 2025-10-06 00:32:25,004 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 508 will-moore 'Broadcast channel demo' (stage: draft) 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 503 will-moore 'Basic working tile-coordinates shown over the image' (stage: draft) 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 497 will-moore 'Minimal add tags to ROI functionality' (stage: draft) 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 227 will-moore 'Vectortile investigation' (status: failure) 2025-10-06 00:32:25,004 [ scc.merge] INFO Updating 7a798ce..bb94cf8 2025-10-06 00:32:25,004 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,004 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,004 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 460 will-moore 'Channel min spinner fix' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 499 dependabot[bot] 'Bump nanoid and mocha' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 502 dependabot[bot] 'Bump serialize-javascript and mocha' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Repository: ome/omero-mapr 2025-10-06 00:32:25,005 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2025-10-06 00:32:25,005 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Repository: ome/omero-metadata 2025-10-06 00:32:25,005 [ scc.merge] INFO Updating 3cd120c..55060a2 2025-10-06 00:32:25,005 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Repository: ome/omero-parade 2025-10-06 00:32:25,005 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2025-10-06 00:32:25,005 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2025-10-06 00:32:25,005 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,005 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,005 [ scc.merge] INFO 2025-10-06 00:32:25,005 [ scc.merge] INFO Repository: ome/omero-rois 2025-10-06 00:32:25,005 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2025-10-06 00:32:25,006 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 33 jo-mueller 'Add roi to array functions' 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 34 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Repository: ome/omero-signup 2025-10-06 00:32:25,006 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2025-10-06 00:32:25,006 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' (status: failure) 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 73 marimeireles 'Rm python, add miniconda to CI' (user: marimeireles) 2025-10-06 00:32:25,006 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 12 joshmoore 'IDR: use downloaded ansible templates & variables to configure infra' 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 76 will-moore 'Run cli deps' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Repository: ome/omero-upload 2025-10-06 00:32:25,006 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2025-10-06 00:32:25,006 [ scc.merge] INFO Updating deab817..160d894 2025-10-06 00:32:25,006 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 20 jburel 'Build' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Repository: ome/omero-web-zarr 2025-10-06 00:32:25,006 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2025-10-06 00:32:25,006 [ scc.merge] INFO Updating 8f3c313..00e0207 2025-10-06 00:32:25,006 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,006 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2025-10-06 00:32:25,006 [ scc.merge] INFO 2025-10-06 00:32:25,006 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2025-10-06 00:32:25,007 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2025-10-06 00:32:25,007 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2025-10-06 00:32:25,007 [ scc.merge] INFO Already up to date. 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 100 dominikl 'Run tests properly' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Repository: ome/scripts 2025-10-06 00:32:25,007 [ scc.merge] INFO Excluded PRs: 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 198 JulianHn 'Adding Support for different CSV Encodings in Import_Scripts/Populate_Metadata.py' (user: JulianHn) 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 103 joshmoore 'Script for calculating min/max' (exclude comment) 2025-10-06 00:32:25,007 [ scc.merge] INFO Updating 4b4c755..03b9116 2025-10-06 00:32:25,007 [ scc.merge] INFO Previously merged: 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Merged PRs: 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] INFO Conflicting PRs (not included): 2025-10-06 00:32:25,007 [ scc.merge] INFO - PR 202 will-moore 'Add Plate support to KeyVal_to_csv.py' 2025-10-06 00:32:25,007 [ scc.merge] INFO 2025-10-06 00:32:25,007 [ scc.merge] DEBUG Cleaning remote branches created for merging 2025-10-06 00:32:25,007 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2025-10-06 00:32:25,009 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2025-10-06 00:32:25,011 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,013 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2025-10-06 00:32:25,013 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,015 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2025-10-06 00:32:25,015 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2025-10-06 00:32:25,017 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,019 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2025-10-06 00:32:25,019 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2025-10-06 00:32:25,022 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,023 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2025-10-06 00:32:25,024 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,025 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2025-10-06 00:32:25,025 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,027 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2025-10-06 00:32:25,027 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,029 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2025-10-06 00:32:25,029 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,032 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2025-10-06 00:32:25,032 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,033 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2025-10-06 00:32:25,034 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2025-10-06 00:32:25,035 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,037 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2025-10-06 00:32:25,037 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2025-10-06 00:32:25,039 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,041 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2025-10-06 00:32:25,041 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,043 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2025-10-06 00:32:25,043 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2025-10-06 00:32:25,045 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2025-10-06 00:32:25,048 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,050 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2025-10-06 00:32:25,050 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2025-10-06 00:32:25,052 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2025-10-06 00:32:25,052 [ scc.git] DEBUG Calling 'git remote' 2025-10-06 00:32:25,054 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory Updating omero-gateway from 5.10.0 to 5.10.4-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'minimal-omero-client' [detached HEAD ba98525] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add ..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798ce nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 8afbaef] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2025-10-06 00:33:11,295 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2025-10-06 00:33:20,594 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2025-10-06 00:33:22,985 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-10-06 00:33:27,812 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2025-10-06 00:34:07,742 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS