18:22:04 Started by user devspace 18:22:04 Running as SYSTEM 18:22:04 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 18:22:04 The recommended git tool is: NONE 18:22:07 No credentials specified 18:22:07 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 18:22:07 Fetching changes from the remote Git repository 18:22:08 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 18:22:08 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 18:22:08 > git --version # timeout=10 18:22:08 > git --version # 'git version 2.39.3' 18:22:08 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 18:22:10 > git rev-parse origin/merge_ci^{commit} # timeout=10 18:22:10 Checking out Revision 77df23582694bf421cab9067d65caa48a6788ea0 (origin/merge_ci) 18:22:10 > git config core.sparsecheckout # timeout=10 18:22:10 > git checkout -f 77df23582694bf421cab9067d65caa48a6788ea0 # timeout=10 18:22:11 Commit message: "Add version.properties to etc/omero.properties" 18:22:11 > git rev-list --no-walk 77df23582694bf421cab9067d65caa48a6788ea0 # timeout=10 18:22:11 Cleaning workspace 18:22:11 > git rev-parse --verify HEAD # timeout=10 18:22:11 Resetting working tree 18:22:11 > git reset --hard # timeout=10 18:22:12 > git clean -fdx # timeout=10 18:22:12 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 178 18:22:12 [OMERO-build] $ /bin/bash -xe /tmp/jenkins7963159210706130507.sh 18:22:12 + mv omero-scripts/dist/omero_scripts-5.8.4.dev0.tar.gz . 18:22:12 + cd src 18:22:12 + export OMERO_BRANCH=merge_ci 18:22:12 + OMERO_BRANCH=merge_ci 18:22:12 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 18:22:12 + source /home/omero/settings.env 18:22:12 ++ OMERO_DB_HOST=pg 18:22:12 ++ OMERO_DB_USER=postgres 18:22:12 ++ OMERO_DB_PASS= 18:22:12 ++ OMERO_ROOT_PASS=omero 18:22:12 ++ OMERO_DATA_DIR=/OMERO 18:22:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 18:22:12 + python3 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 18:22:16 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 18:22:17 Collecting zeroc-ice==3.6.5 18:22:18 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 18:22:20 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 18:22:20 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 18:22:20 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U setuptools omero-py 18:22:20 Requirement already satisfied: setuptools in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (75.1.0) 18:22:21 Requirement already satisfied: omero-py in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (5.19.5) 18:22:21 Requirement already satisfied: numpy<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.4) 18:22:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (3.6.5) 18:22:21 Requirement already satisfied: urllib3<2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.26.18) 18:22:21 Requirement already satisfied: future in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.0.0) 18:22:21 Requirement already satisfied: portalocker in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.8.2) 18:22:21 Requirement already satisfied: requests in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (2.31.0) 18:22:21 Requirement already satisfied: appdirs in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (1.4.4) 18:22:21 Requirement already satisfied: PyYAML in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (6.0.1) 18:22:21 Requirement already satisfied: Pillow>=10.0.0 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from omero-py) (10.2.0) 18:22:22 Requirement already satisfied: charset-normalizer<4,>=2 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.3.2) 18:22:22 Requirement already satisfied: certifi>=2017.4.17 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (2024.2.2) 18:22:22 Requirement already satisfied: idna<4,>=2.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib/python3.9/site-packages (from requests->omero-py) (3.6) 18:22:22 WARNING: You are using pip version 21.2.3; however, version 24.2 is available. 18:22:22 You should consider upgrading via the '/home/omero/workspace/OMERO-build/omero-virtualenv/bin/python3 -m pip install --upgrade pip' command. 18:22:22 + source docs/hudson/OMERO.sh 18:22:22 ++ set -e 18:22:22 ++ set -u 18:22:22 ++ set -x 18:22:22 ++ source docs/hudson/functions.sh 18:22:22 ++ echo Building merge_ci 18:22:22 Building merge_ci 18:22:22 ++ python3 ./build.py build-dev release-all 18:22:22 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 18:22:22 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 18:22:23 18:22:23 check-ivy: 18:22:23 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 18:22:23 Created dir: /home/omero/workspace/OMERO-build/src/target 18:22:23 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:22:23 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:22:24 18:22:24 build-scons: 18:22:24 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 18:22:24 No sub-builds to iterate on 18:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools... 18:22:24 18:22:24 buildlist: 18:22:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:22:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:22:24 18:22:24 clean: 18:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:22:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:22:25 18:22:25 python-clean: 18:22:25 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 18:22:25 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-508-77df235826-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 18:22:25 warnings.warn( 18:22:25 running clean 18:22:25 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 18:22:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 18:22:26 18:22:26 python-clean: 18:22:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 18:22:26 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-508-77df235826-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 18:22:26 warnings.warn( 18:22:26 running clean 18:22:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:22:26 18:22:26 python-clean: 18:22:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 18:22:26 /usr/lib/python3.9/site-packages/setuptools/dist.py:480: UserWarning: The version specified ('5.6.3-508-77df235826-ice36') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 18:22:26 warnings.warn( 18:22:26 running clean 18:22:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 18:22:26 Deleting directory /home/omero/workspace/OMERO-build/src/target 18:22:26 18:22:26 build-scons: 18:22:26 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 18:22:26 18:22:26 build: 18:22:26 No sub-builds to iterate on 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 18:22:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 18:22:26 18:22:26 tools-init: 18:22:26 no-op 18:22:26 18:22:26 retrieve: 18:22:26 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:22:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:22:27 WARNING: An illegal reflective access operation has occurred 18:22:27 WARNING: Illegal reflective access by org.apache.ivy.util.url.IvyAuthenticator (file:/home/omero/workspace/OMERO-build/src/lib/repository/ivy-2.4.0.jar) to field java.net.Authenticator.theAuthenticator 18:22:27 WARNING: Please consider reporting this to the maintainers of org.apache.ivy.util.url.IvyAuthenticator 18:22:27 WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations 18:22:27 WARNING: All illegal access operations will be denied in a future release 18:23:16 18:23:16 prepare: 18:23:16 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 18:23:16 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 18:23:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 18:23:16 18:23:16 pre-compile: 18:23:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 18:23:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 18:23:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 18:23:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 18:23:16 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 18:23:16 18:23:16 compile: 18:23:16 no-op 18:23:16 18:23:16 package: 18:23:16 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 18:23:16 18:23:16 install: 18:23:16 :: delivering :: omero#omero_client;working@83c9dfd0c7fb :: 5.6.3-508-77df235826-ice36 :: integration :: Thu Sep 19 18:22:26 UTC 2024 18:23:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 18:23:16 :: publishing :: omero#omero_client 18:23:16 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-508-77df235826-ice36/omero_client-5.6.3-508-77df235826-ice36.jar 18:23:16 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-508-77df235826-ice36/omero_client-5.6.3-508-77df235826-ice36.xml 18:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:23:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:23:17 18:23:17 retrieve: 18:23:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:23:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tools... 18:23:17 18:23:17 dist: 18:23:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 18:23:17 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 18:23:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 18:23:17 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.8.4.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 18:23:17 Copying 28 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 18:23:17 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist 18:23:17 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 18:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tests... 18:23:17 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 18:23:17 18:23:17 copy-licenses: 18:23:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 18:23:17 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 18:23:17 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 18:23:17 18:23:17 copy-history: 18:23:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 18:23:17 18:23:17 copy-etc: 18:23:17 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 18:23:17 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 18:23:17 18:23:17 copy-sql: 18:23:17 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 18:23:26 18:23:26 copy-server: 18:23:26 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.0.11 won 18:23:26 18:23:26 copy-client: 18:23:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 18:23:27 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.0.11 won 18:23:27 18:23:27 update-version: 18:23:27 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 18:23:27 18:23:27 create-workdirs: 18:23:27 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 18:23:27 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 18:23:27 18:23:27 copy-luts: 18:23:27 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 18:23:27 Copying 39 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 18:23:27 18:23:27 test-compile: 18:23:27 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 18:23:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 18:23:28 18:23:28 testng-init: 18:23:28 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:23:28 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:23:31 18:23:30,981 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 18:23:31 18:23:30,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - No custom configurators were discovered as a service. 18:23:31 18:23:30,984 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 18:23:31 18:23:30,987 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 18:23:31 18:23:30,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 18:23:31 18:23:30,988 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 18:23:31 18:23:30,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 18:23:31 18:23:30,989 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 18:23:31 18:23:30,990 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 18:23:31 18:23:30,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 18:23:31 18:23:30,991 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 18:23:31 18:23:30,992 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@354aaf03 - Resource [logback.xml] occurs multiple times on the classpath. 18:23:31 18:23:30,992 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@354aaf03 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 18:23:31 18:23:30,992 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@354aaf03 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 18:23:31 18:23:31,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 18:23:31 18:23:31,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 18:23:31 18:23:31,218 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 18:23:31 18:23:31,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@63e31b89 - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 18:23:31 18:23:31,220 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@63e31b89 - Please move "immediateFlush" property into the enclosing appender. 18:23:31 18:23:31,291 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@63e31b89 - Setting the "immediateFlush" property of the enclosing appender to true 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 18:23:31 18:23:31,292 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 18:23:31 18:23:31,293 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@42141c59 - End of configuration. 18:23:31 18:23:31,295 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@49854d93 - Registering current configuration as safe fallback point 18:23:31 18:23:31,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2bc41bcb - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 305 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 18:23:31 18:23:31 lifecycle.test-compile: 18:23:31 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 18:23:31 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 18:23:32 warning: [options] bootstrap class path not set in conjunction with -source 8 18:23:33 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:33 import omero.grid.RawAccessRequest; 18:23:33 ^ 18:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:34 import omero.grid.RawAccessRequest; 18:23:34 ^ 18:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:34 import omero.grid.RawAccessRequest; 18:23:34 ^ 18:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:34 import omero.model.ImportJob; 18:23:34 ^ 18:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 18:23:34 import omero.model.ImportJobI; 18:23:34 ^ 18:23:34 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 18:23:34 IObject link = (IObject) linkClass.newInstance(); 18:23:34 ^ 18:23:34 where T is a type-variable: 18:23:34 T extends Object declared in class Class 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 18:23:35 T copy = (T) obj.getClass().newInstance(); 18:23:35 ^ 18:23:35 where T is a type-variable: 18:23:35 T extends Object declared in class Class 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:35 RawAccessRequest raw = new RawAccessRequest(); 18:23:35 ^ 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:35 RawAccessRequest raw = new RawAccessRequest(); 18:23:35 ^ 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 18:23:35 raw.repoUuid = legacy.root().getHash().getValue(); 18:23:35 ^ 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 18:23:35 raw.command = "rm"; 18:23:35 ^ 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 18:23:35 raw.args = Arrays.asList(path); 18:23:35 ^ 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 18:23:35 final IObject link = linkClass.newInstance(); 18:23:35 ^ 18:23:35 where T is a type-variable: 18:23:35 T extends Object declared in class Class 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 18:23:35 originalLink.setChild(annotationClass.newInstance()); 18:23:35 ^ 18:23:35 where T is a type-variable: 18:23:35 T extends Object declared in class Class 18:23:35 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 18:23:35 RoiResult r = svc.findByImage(id, new RoiOptions()); 18:23:35 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:36 final RawAccessRequest request = new RawAccessRequest(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:36 final RawAccessRequest request = new RawAccessRequest(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 18:23:36 request.repoUuid = repo.root().getHash().getValue(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 18:23:36 request.command = "exists"; 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 18:23:36 request.args = Collections.singletonList(dirPath); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:36 final RawAccessRequest request = new RawAccessRequest(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 18:23:36 final RawAccessRequest request = new RawAccessRequest(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 18:23:36 request.repoUuid = repo.root().getHash().getValue(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 18:23:36 request.command = "exists"; 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 18:23:36 request.args = Collections.singletonList(dirName); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:36 final ImportJob importJob = new ImportJobI(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 18:23:36 final ImportJob importJob = new ImportJobI(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 18:23:36 importJob.setImageName(omero.rtypes.rstring(name)); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 18:23:36 importJob.setImageDescription(omero.rtypes.rstring(desc)); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:36 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 18:23:36 final String savedName = sent.getImageName().getValue().toString(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 18:23:36 final String savedDesc = sent.getImageDescription().getValue().toString(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 18:23:36 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 18:23:36 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 18:23:36 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 RoiResult r = svc.findByImage(image.getId().getValue(), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 l = svc.getRoiMeasurements(image.getId().getValue(), options); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 l = svc.getRoiMeasurements(image.getId().getValue(), options); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 18:23:36 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 18:23:36 table = svc.getTable(f.getId().getValue()); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 RoiResult r = svc.findByImage(image.getId().getValue(), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 18:23:36 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 18:23:36 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 18:23:36 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Long(long) in Long has been deprecated 18:23:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [deprecation] Integer(int) in Integer has been deprecated 18:23:36 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 18:23:36 svc.getShapeStatsRestricted( 18:23:36 ^ 18:23:36 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 18:23:36 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 18:23:36 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 18:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 18:23:37 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 18:23:37 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 18:23:37 request.typesToIgnore = Collections.singletonList("Annotation"); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 18:23:37 request.typesToIgnore = Collections.singletonList("Annotation"); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 18:23:37 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 18:23:37 p2.setRelatedTo(p1); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 18:23:37 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 18:23:37 pixels1.setRelatedTo(pixels2); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 18:23:37 Pixels pixels = pixels1.getRelatedTo(); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 18:23:37 Assert.assertNull(pixels1.getRelatedTo()); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 18:23:37 pixels1.setRelatedTo(pixels2); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 18:23:37 Pixels pixels = pixels1.getRelatedTo(); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 18:23:37 Assert.assertNull(pixels1.getRelatedTo()); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options); 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:37 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 18:23:37 ^ 18:23:37 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 18:23:37 l = svc.getRoiMeasurements(image.getId().getValue(), options); 18:23:37 ^ 18:23:37 Note: Some input files use unchecked or unsafe operations. 18:23:37 Note: Recompile with -Xlint:unchecked for details. 18:23:37 88 warnings 18:23:37 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_532291340.tmp 18:23:37 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 18:23:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:23:37 :: delivering :: omero#OmeroJava-test;working@83c9dfd0c7fb :: 5.6.3-508-77df235826-ice36 :: integration :: Thu Sep 19 18:23:27 UTC 2024 18:23:37 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 18:23:37 :: publishing :: omero#OmeroJava-test 18:23:37 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-508-77df235826-ice36.jar 18:23:37 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-508-77df235826-ice36.xml 18:23:37 18:23:37 build-eclipse: 18:23:37 No sub-builds to iterate on 18:23:37 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 18:23:37 18:23:37 retrieve: 18:23:37 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 18:23:37 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 18:23:40 18:23:40 prepare: 18:23:40 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 18:23:44 18:23:44 release-clients: 18:23:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-508-77df235826-ice36.zip 18:23:50 18:23:50 release-zip: 18:23:50 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-508-77df235826-ice36.zip 18:24:01 18:24:01 BUILD SUCCESSFUL 18:24:01 Total time: 1 minute 39 seconds 18:24:01 ++ '[' -d .git ']' 18:24:01 ++ python3 ./build.py release-src 18:24:01 OpenJDK 64-Bit Server VM warning: Ignoring option MaxPermSize; support was removed in 8.0 18:24:01 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 18:24:02 18:24:02 release-src-git: 18:24:02 Releasing openmicroscopy-5.6.3-508-77df235826-ice36 18:24:03 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-508-77df235826-ice36.zip 18:24:03 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-508-77df235826-ice36-base.zip 18:24:05 18:24:05 BUILD SUCCESSFUL 18:24:05 Total time: 3 seconds 18:24:05 ++ echo BUILD_NUMBER=181 18:24:05 ++ echo OMERO_BRANCH=merge_ci 18:24:05 ++ git_info 18:24:05 +++ git rev-parse HEAD 18:24:05 ++ HEAD=77df23582694bf421cab9067d65caa48a6788ea0 18:24:05 ++ git log --max-count=1 77df23582694bf421cab9067d65caa48a6788ea0 18:24:05 ++ env 18:24:05 ++ sort 18:24:05 Archiving artifacts 18:24:33 Finished: SUCCESS