00:47:02 Started by upstream project "Trigger" build number 656 00:47:02 originally caused by: 00:47:02 Started by timer 00:47:02 Running as SYSTEM 00:47:02 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:47:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins7236927557584529869.sh 00:47:02 + source /home/settings.env 00:47:02 ++ OMERO_DB_HOST=pg 00:47:02 ++ OMERO_DB_USER=postgres 00:47:02 ++ OMERO_DB_PASS= 00:47:02 ++ OMERO_ROOT_PASS=omero 00:47:02 ++ OMERO_DATA_DIR=/OMERO 00:47:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:02 + OMERO_DB_NAME=OMERO-server 00:47:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:02 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:47:02 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:02 ++ deactivate nondestructive 00:47:02 ++ '[' -n '' ']' 00:47:02 ++ '[' -n '' ']' 00:47:02 ++ hash -r 00:47:02 ++ '[' -n '' ']' 00:47:02 ++ unset VIRTUAL_ENV 00:47:02 ++ unset VIRTUAL_ENV_PROMPT 00:47:02 ++ '[' '!' nondestructive = nondestructive ']' 00:47:02 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:02 ++ export VIRTUAL_ENV 00:47:02 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:02 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:02 ++ export PATH 00:47:02 ++ '[' -n '' ']' 00:47:02 ++ '[' -z '' ']' 00:47:02 ++ _OLD_VIRTUAL_PS1= 00:47:02 ++ PS1='(.venv3) ' 00:47:02 ++ export PS1 00:47:02 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:47:02 ++ export VIRTUAL_ENV_PROMPT 00:47:02 ++ hash -r 00:47:02 + omero admin stop 00:47:03 Waiting on shutdown. Use CTRL-C to exit 00:47:03 .+ sleep 5 00:47:18 + deactivate 00:47:18 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:47:18 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:18 + export PATH 00:47:18 + unset _OLD_VIRTUAL_PATH 00:47:18 + '[' -n '' ']' 00:47:18 + hash -r 00:47:18 + '[' -n '' ']' 00:47:18 + unset VIRTUAL_ENV 00:47:18 + unset VIRTUAL_ENV_PROMPT 00:47:18 + '[' '!' '' = nondestructive ']' 00:47:18 + unset -f deactivate 00:47:18 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:47:19 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 00:47:22 + '[' false = true ']' 00:47:22 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:47:22 Skipping PURGE_DATA:CleanDbAndRepo 00:47:22 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.21.3.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.29.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT.jar /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT-javadoc.jar /home/omero/workspace/OMERO-server/zarr-java-0.0.5-SNAPSHOT-sources.jar 00:47:24 Copied 1 artifact from "OMERO-build" build number 552 00:47:25 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 549 00:47:25 Copied 2 artifacts from "OMERO-build-build" build number 583 00:47:25 Copied 4 artifacts from "OMERO-zarr-pixel-buffer-build" build number 93 00:47:25 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14634070734454849002.sh 00:47:25 + source /home/settings.env 00:47:25 ++ OMERO_DB_HOST=pg 00:47:25 ++ OMERO_DB_USER=postgres 00:47:25 ++ OMERO_DB_PASS= 00:47:25 ++ OMERO_ROOT_PASS=omero 00:47:25 ++ OMERO_DATA_DIR=/OMERO 00:47:25 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:25 + OMERO_DB_NAME=OMERO-server 00:47:25 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:25 + mkdir -p /home/omero/omero-server-data 00:47:25 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:25 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:25 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:25 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:25 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:25 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:25 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:25 ++ ls OMERO.server-5.6.3-576-8ea64e120f-ice36-b552.zip 00:47:25 + ZIP=OMERO.server-5.6.3-576-8ea64e120f-ice36-b552.zip 00:47:25 + '[' '!' -z '' ']' 00:47:25 + DIST=OMERO.server-5.6.3-576-8ea64e120f-ice36-b552 00:47:25 + unzip OMERO.server-5.6.3-576-8ea64e120f-ice36-b552.zip 00:47:25 Archive: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552.zip 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/blitz/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/grid/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/profiles/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/error/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/grid/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/janelia/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/matplotlib/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/ncsa_paledit/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/seaborn/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/luts/wcif/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/analysis_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/annotation_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/export_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/figure_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/import_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/scripts/omero/util_scripts/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/server/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/share/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/share/licenses/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/misc/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__1/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__10/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__11/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__2/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__3/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__4/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__5/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__6/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__7/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__8/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__9/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__4/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__5/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__6/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__7/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.1__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.2__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.2__0/t/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.3__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.4__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.0__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.1__1/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.2__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__1/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__2/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__3/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/ 00:47:25 creating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/var/ 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/LICENSE.txt 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/backup.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/blitz/mail-senders.example 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/blitz/mail-server.example 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/build.properties 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/env.bat 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/env.sh 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/hibernate.properties 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/ice.config 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/logback-cli.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/logback-indexing-cli.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/logback-indexing.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/logback.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/mime.types 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/node1.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/node2.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/omero.properties 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/profiles/psql 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/rollover.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/Windows.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/error/maintainance.html 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/grid/README 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/grid/default.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/grid/templates.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/grid/windefault.xml 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/ice.config 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/internal.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/master.cfg 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/templates/robot.template 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/etc/testdropbox.config 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/history.rst 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/OMEZarrReader.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/accessors-smart.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/activation.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aggdesigner-algorithm.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aircompressor.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/antlr.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aopalliance.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/apiguardian-api.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/asm.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/avatica-core.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/avatica-metrics.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aws-java-sdk-core.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aws-java-sdk-kms.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/aws-java-sdk-s3.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/base.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-anim.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-awt-util.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-bridge.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-codec.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-constants.jar 00:47:25 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/lib/client/batik-css.jar 00:47:25 inflating: 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OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__2/OMERO3A__1.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__3/OMERO3A__2.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__3/OMERO3__5.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__4/OMERO3A__3.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__4/OMERO3__5.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__5/OMERO3A__4.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__6/OMERO3A__5.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__7/OMERO3A__6.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__8/OMERO3A__6.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3A__9/OMERO3A__8.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__4/OMERO3__1.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__5/OMERO3__4.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__6/OMERO3__5.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO3__7/OMERO3__6.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.1__0/OMERO4__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO4__0/OMERO3A__11.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/psql-footer.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/psql-header.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/schema.sql 00:47:27 inflating: OMERO.server-5.6.3-576-8ea64e120f-ice36-b552/sql/psql/OMERO5.4__0/views.sql 00:47:27 + rm -f OMERO.server-5.6.3-576-8ea64e120f-ice36-b552.zip 00:47:27 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-576-8ea64e120f-ice36-b552 /home/omero/workspace/OMERO-server/OMERO.server 00:47:27 ++ ls omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 00:47:27 + JAR=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 00:47:27 ++ basename omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 00:47:27 + JAR_NAME=omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 00:47:27 + mv /home/omero/workspace/OMERO-server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar /home/omero/workspace/OMERO-server/OMERO.server/lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar 00:47:27 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 00:47:27 --2025-10-18 00:47:27-- https://repo1.maven.org/maven2/com/github/ben-manes/caffeine/caffeine/3.1.8/caffeine-3.1.8.jar 00:47:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ... 00:47:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 00:47:27 HTTP request sent, awaiting response... 200 OK 00:47:27 Length: 889211 (868K) [application/java-archive] 00:47:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ 00:47:27 00:47:27 0K .......... .......... .......... .......... .......... 5% 25.3M 0s 00:47:27 50K .......... .......... .......... .......... .......... 11% 5.27M 0s 00:47:27 100K .......... .......... .......... .......... .......... 17% 6.36M 0s 00:47:27 150K .......... .......... .......... .......... .......... 23% 31.3M 0s 00:47:27 200K .......... .......... .......... .......... .......... 28% 135M 0s 00:47:27 250K .......... .......... .......... .......... .......... 34% 273M 0s 00:47:27 300K .......... .......... .......... .......... .......... 40% 100M 0s 00:47:27 350K .......... .......... .......... .......... .......... 46% 6.49M 0s 00:47:27 400K .......... .......... .......... .......... .......... 51% 122M 0s 00:47:27 450K .......... .......... .......... .......... .......... 57% 98.1M 0s 00:47:27 500K .......... .......... .......... .......... .......... 63% 112M 0s 00:47:27 550K .......... .......... .......... .......... .......... 69% 152M 0s 00:47:27 600K .......... .......... .......... .......... .......... 74% 6.37M 0s 00:47:27 650K .......... .......... .......... .......... .......... 80% 200M 0s 00:47:27 700K .......... .......... .......... .......... .......... 86% 86.7M 0s 00:47:27 750K .......... .......... .......... .......... .......... 92% 87.7M 0s 00:47:27 800K .......... .......... .......... .......... .......... 97% 148M 0s 00:47:27 850K .......... ........ 100% 182M=0.04s 00:47:27 00:47:27 2025-10-18 00:47:27 (21.2 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/caffeine-3.1.8.jar’ saved [889211/889211] 00:47:27 00:47:27 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 00:47:27 --2025-10-18 00:47:27-- https://repo1.maven.org/maven2/dev/zarr/jzarr/0.4.2/jzarr-0.4.2.jar 00:47:27 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:130c, ... 00:47:27 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 00:47:27 HTTP request sent, awaiting response... 200 OK 00:47:27 Length: 73309 (72K) [application/java-archive] 00:47:27 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ 00:47:27 00:47:27 0K .......... .......... .......... .......... .......... 69% 33.5M 0s 00:47:27 50K .......... .......... . 100% 2.71M=0.009s 00:47:27 00:47:27 2025-10-18 00:47:27 (7.57 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/jzarr-0.4.2.jar’ saved [73309/73309] 00:47:27 00:47:27 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 00:47:27 --2025-10-18 00:47:27-- https://repo1.maven.org/maven2/org/lasersonlab/s3fs/2.2.3/s3fs-2.2.3.jar 00:47:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.19.12, 104.18.18.12, 2606:4700::6812:120c, ... 00:47:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.19.12|:443... connected. 00:47:28 HTTP request sent, awaiting response... 200 OK 00:47:28 Length: 63303 (62K) [application/java-archive] 00:47:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ 00:47:28 00:47:28 0K .......... .......... .......... .......... .......... 80% 34.8M 0s 00:47:28 50K .......... . 100% 154M=0.001s 00:47:28 00:47:28 2025-10-18 00:47:28 (40.9 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/s3fs-2.2.3.jar’ saved [63303/63303] 00:47:28 00:47:28 + wget --no-hsts -P /home/omero/workspace/OMERO-server/OMERO.server/lib/server https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 00:47:28 --2025-10-18 00:47:28-- https://repo1.maven.org/maven2/com/amazonaws/aws-java-sdk-s3/1.12.659/aws-java-sdk-s3-1.12.659.jar 00:47:28 Resolving repo1.maven.org (repo1.maven.org)... 104.18.18.12, 104.18.19.12, 2606:4700::6812:120c, ... 00:47:28 Connecting to repo1.maven.org (repo1.maven.org)|104.18.18.12|:443... connected. 00:47:28 HTTP request sent, awaiting response... 200 OK 00:47:28 Length: 1271272 (1.2M) [application/java-archive] 00:47:28 Saving to: ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ 00:47:28 00:47:28 0K .......... .......... .......... .......... .......... 4% 34.4M 0s 00:47:28 50K .......... .......... .......... .......... .......... 8% 5.25M 0s 00:47:28 100K .......... .......... .......... .......... .......... 12% 6.47M 0s 00:47:28 150K .......... .......... .......... .......... .......... 16% 32.6M 0s 00:47:28 200K .......... .......... .......... .......... .......... 20% 165M 0s 00:47:28 250K .......... .......... .......... .......... .......... 24% 96.5M 0s 00:47:28 300K .......... .......... .......... .......... .......... 28% 157M 0s 00:47:28 350K .......... .......... .......... .......... .......... 32% 141M 0s 00:47:28 400K .......... .......... .......... .......... .......... 36% 6.27M 0s 00:47:28 450K .......... .......... .......... .......... .......... 40% 149M 0s 00:47:28 500K .......... .......... .......... .......... .......... 44% 56.4M 0s 00:47:28 550K .......... .......... .......... .......... .......... 48% 345M 0s 00:47:28 600K .......... .......... .......... .......... .......... 52% 165M 0s 00:47:28 650K .......... .......... .......... .......... .......... 56% 6.43M 0s 00:47:28 700K .......... .......... .......... .......... .......... 60% 40.1M 0s 00:47:28 750K .......... .......... .......... .......... .......... 64% 283M 0s 00:47:28 800K .......... .......... .......... .......... .......... 68% 195M 0s 00:47:28 850K .......... .......... .......... .......... .......... 72% 89.2M 0s 00:47:28 900K .......... .......... .......... .......... .......... 76% 6.17M 0s 00:47:28 950K .......... .......... .......... .......... .......... 80% 89.7M 0s 00:47:28 1000K .......... .......... .......... .......... .......... 84% 241M 0s 00:47:28 1050K .......... .......... .......... .......... .......... 88% 211M 0s 00:47:28 1100K .......... .......... .......... .......... .......... 92% 85.9M 0s 00:47:28 1150K .......... .......... .......... .......... .......... 96% 6.58M 0s 00:47:28 1200K .......... .......... .......... .......... . 100% 45.0M=0.06s 00:47:28 00:47:28 2025-10-18 00:47:28 (20.8 MB/s) - ‘/home/omero/workspace/OMERO-server/OMERO.server/lib/server/aws-java-sdk-s3-1.12.659.jar’ saved [1271272/1271272] 00:47:28 00:47:28 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:28 ++ deactivate nondestructive 00:47:28 ++ '[' -n '' ']' 00:47:28 ++ '[' -n '' ']' 00:47:28 ++ hash -r 00:47:28 ++ '[' -n '' ']' 00:47:28 ++ unset VIRTUAL_ENV 00:47:28 ++ unset VIRTUAL_ENV_PROMPT 00:47:28 ++ '[' '!' nondestructive = nondestructive ']' 00:47:28 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:28 ++ export VIRTUAL_ENV 00:47:28 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:28 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:28 ++ export PATH 00:47:28 ++ '[' -n '' ']' 00:47:28 ++ '[' -z '' ']' 00:47:28 ++ _OLD_VIRTUAL_PS1= 00:47:28 ++ PS1='(.venv3) ' 00:47:28 ++ export PS1 00:47:28 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:47:28 ++ export VIRTUAL_ENV_PROMPT 00:47:28 ++ hash -r 00:47:28 + pip install -U pip 00:47:28 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 00:47:28 Collecting pip 00:47:28 Using cached pip-25.2-py3-none-any.whl (1.8 MB) 00:47:28 Installing collected packages: pip 00:47:28 Attempting uninstall: pip 00:47:29 Found existing installation: pip 22.3.1 00:47:29 Uninstalling pip-22.3.1: 00:47:29 Successfully uninstalled pip-22.3.1 00:47:30 Successfully installed pip-25.2 00:47:30 WARNING: There was an error checking the latest version of pip. 00:47:30 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:47:30 Collecting zeroc-ice==3.6.5 00:47:30 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:47:35 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 8.1 MB/s 0:00:04 00:47:35 Installing collected packages: zeroc-ice 00:47:36 Successfully installed zeroc-ice-3.6.5 00:47:36 + pip install markdown 00:47:36 Collecting markdown 00:47:36 Using cached markdown-3.9-py3-none-any.whl.metadata (5.1 kB) 00:47:36 Using cached markdown-3.9-py3-none-any.whl (107 kB) 00:47:36 Installing collected packages: markdown 00:47:36 Successfully installed markdown-3.9 00:47:36 + pip install reportlab 00:47:37 Collecting reportlab 00:47:37 Using cached reportlab-4.4.4-py3-none-any.whl.metadata (1.7 kB) 00:47:37 Collecting pillow>=9.0.0 (from reportlab) 00:47:37 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 00:47:37 Collecting charset-normalizer (from reportlab) 00:47:37 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) 00:47:37 Using cached reportlab-4.4.4-py3-none-any.whl (2.0 MB) 00:47:37 Using cached pillow-12.0.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 00:47:37 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 00:47:37 Installing collected packages: pillow, charset-normalizer, reportlab 00:47:38 00:47:38 Successfully installed charset-normalizer-3.4.4 pillow-12.0.0 reportlab-4.4.4 00:47:38 + pip install pyarrow 00:47:39 Collecting pyarrow 00:47:39 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.3 kB) 00:47:39 Using cached pyarrow-21.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (42.8 MB) 00:47:39 Installing collected packages: pyarrow 00:47:40 Successfully installed pyarrow-21.0.0 00:47:40 + pip install omego 00:47:41 Collecting omego 00:47:41 Using cached omego-0.7.0-py3-none-any.whl 00:47:41 Collecting future (from omego) 00:47:41 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 00:47:41 Collecting yaclifw>=0.1.1 (from omego) 00:47:41 Using cached yaclifw-0.2.0-py3-none-any.whl 00:47:41 Collecting six (from yaclifw>=0.1.1->omego) 00:47:41 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:47:41 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:47:41 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:47:41 Installing collected packages: six, future, yaclifw, omego 00:47:41 00:47:41 Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 00:47:41 + pip install tables 00:47:42 Collecting tables 00:47:42 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) 00:47:42 Collecting numpy>=1.20.0 (from tables) 00:47:42 Using cached numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 00:47:42 Collecting numexpr>=2.6.2 (from tables) 00:47:42 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 00:47:42 Collecting packaging (from tables) 00:47:42 Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) 00:47:42 Collecting py-cpuinfo (from tables) 00:47:42 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:47:42 Collecting blosc2>=2.3.0 (from tables) 00:47:42 Using cached blosc2-3.10.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) 00:47:42 Collecting typing-extensions>=4.4.0 (from tables) 00:47:42 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 00:47:42 Collecting ndindex (from blosc2>=2.3.0->tables) 00:47:42 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.6 kB) 00:47:42 Collecting msgpack (from blosc2>=2.3.0->tables) 00:47:42 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:47:42 Collecting platformdirs (from blosc2>=2.3.0->tables) 00:47:42 Using cached platformdirs-4.5.0-py3-none-any.whl.metadata (12 kB) 00:47:43 Collecting requests (from blosc2>=2.3.0->tables) 00:47:43 Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) 00:47:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4) 00:47:43 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 00:47:43 Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) 00:47:43 Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) 00:47:43 Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB) 00:47:43 Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) 00:47:43 Using cached certifi-2025.10.5-py3-none-any.whl.metadata (2.5 kB) 00:47:43 Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 00:47:43 Using cached blosc2-3.10.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) 00:47:43 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 00:47:43 Using cached numpy-2.3.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:47:43 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 00:47:43 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 00:47:43 Using cached ndindex-1.10.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (528 kB) 00:47:43 Using cached packaging-25.0-py3-none-any.whl (66 kB) 00:47:43 Using cached platformdirs-4.5.0-py3-none-any.whl (18 kB) 00:47:43 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:47:43 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 00:47:43 Using cached idna-3.11-py3-none-any.whl (71 kB) 00:47:43 Using cached urllib3-2.5.0-py3-none-any.whl (129 kB) 00:47:43 Using cached certifi-2025.10.5-py3-none-any.whl (163 kB) 00:47:43 Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 00:47:46 00:47:46 Successfully installed blosc2-3.10.2 certifi-2025.10.5 idna-3.11 msgpack-1.1.2 ndindex-1.10.0 numexpr-2.14.1 numpy-2.3.4 packaging-25.0 platformdirs-4.5.0 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.5.0 00:47:46 + pip install jinja2 00:47:47 Collecting jinja2 00:47:47 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:47:47 Collecting MarkupSafe>=2.0 (from jinja2) 00:47:47 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 00:47:47 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:47:47 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 00:47:47 Installing collected packages: MarkupSafe, jinja2 00:47:47 00:47:47 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 00:47:47 + pip install zarr 00:47:47 Collecting zarr 00:47:47 Using cached zarr-3.1.3-py3-none-any.whl.metadata (10 kB) 00:47:47 Collecting donfig>=0.8 (from zarr) 00:47:47 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 00:47:48 Collecting numcodecs>=0.14 (from numcodecs[crc32c]>=0.14->zarr) 00:47:48 Using cached numcodecs-0.16.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.3 kB) 00:47:48 Requirement already satisfied: numpy>=1.26 in ./.venv3/lib64/python3.11/site-packages (from zarr) (2.3.4) 00:47:48 Requirement already satisfied: packaging>=22.0 in ./.venv3/lib64/python3.11/site-packages (from zarr) (25.0) 00:47:48 Requirement already satisfied: typing-extensions>=4.9 in ./.venv3/lib64/python3.11/site-packages (from zarr) (4.15.0) 00:47:48 Collecting pyyaml (from donfig>=0.8->zarr) 00:47:48 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 00:47:48 Collecting crc32c>=2.7 (from numcodecs[crc32c]>=0.14->zarr) 00:47:50 Downloading crc32c-2.8-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.8 kB) 00:47:50 Using cached zarr-3.1.3-py3-none-any.whl (276 kB) 00:47:50 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 00:47:50 Using cached numcodecs-0.16.3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.9 MB) 00:47:50 Downloading crc32c-2.8-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (80 kB) 00:47:50 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:47:50 Installing collected packages: pyyaml, numcodecs, crc32c, donfig, zarr 00:47:50 00:47:50 Successfully installed crc32c-2.8 donfig-0.8.1.post1 numcodecs-0.16.3 pyyaml-6.0.3 zarr-3.1.3 00:47:50 + pip install fsspec requests aiohttp s3fs 00:47:51 Collecting fsspec 00:47:51 Using cached fsspec-2025.9.0-py3-none-any.whl.metadata (10 kB) 00:47:51 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (2.32.5) 00:47:51 Collecting aiohttp 00:47:51 Downloading aiohttp-3.13.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:47:51 Collecting s3fs 00:47:51 Using cached s3fs-2025.9.0-py3-none-any.whl.metadata (1.4 kB) 00:47:51 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.4.4) 00:47:51 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests) (3.11) 00:47:51 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests) (2.5.0) 00:47:51 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests) (2025.10.5) 00:47:52 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp) 00:47:52 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) 00:47:52 Collecting aiosignal>=1.4.0 (from aiohttp) 00:47:52 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 00:47:52 Collecting attrs>=17.3.0 (from aiohttp) 00:47:52 Using cached attrs-25.4.0-py3-none-any.whl.metadata (10 kB) 00:47:52 Collecting frozenlist>=1.1.1 (from aiohttp) 00:47:52 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 00:47:52 Collecting multidict<7.0,>=4.5 (from aiohttp) 00:47:52 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 00:47:52 Collecting propcache>=0.2.0 (from aiohttp) 00:47:52 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB) 00:47:52 Collecting yarl<2.0,>=1.17.0 (from aiohttp) 00:47:52 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (75 kB) 00:47:52 Collecting aiobotocore<3.0.0,>=2.5.4 (from s3fs) 00:47:52 Using cached aiobotocore-2.25.0-py3-none-any.whl.metadata (25 kB) 00:47:52 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 00:47:52 Using cached aioitertools-0.12.0-py3-none-any.whl.metadata (3.8 kB) 00:47:53 Collecting botocore<1.40.50,>=1.40.46 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 00:47:53 Using cached botocore-1.40.49-py3-none-any.whl.metadata (5.7 kB) 00:47:53 Collecting python-dateutil<3.0.0,>=2.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 00:47:53 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:47:53 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 00:47:53 Using cached jmespath-1.0.1-py3-none-any.whl.metadata (7.6 kB) 00:47:53 Collecting wrapt<2.0.0,>=1.10.10 (from aiobotocore<3.0.0,>=2.5.4->s3fs) 00:47:53 Using cached wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (6.4 kB) 00:47:53 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<3.0.0,>=2.5.4->s3fs) (1.17.0) 00:47:53 Requirement already satisfied: typing-extensions>=4.2 in ./.venv3/lib64/python3.11/site-packages (from aiosignal>=1.4.0->aiohttp) (4.15.0) 00:47:53 Using cached fsspec-2025.9.0-py3-none-any.whl (199 kB) 00:47:53 Downloading aiohttp-3.13.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.7 MB) 00:47:53 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.7/1.7 MB 20.9 MB/s 0:00:00 00:47:53 Using cached multidict-6.7.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 00:47:53 Using cached yarl-1.22.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (365 kB) 00:47:53 Using cached s3fs-2025.9.0-py3-none-any.whl (30 kB) 00:47:53 Using cached aiobotocore-2.25.0-py3-none-any.whl (86 kB) 00:47:53 Using cached aioitertools-0.12.0-py3-none-any.whl (24 kB) 00:47:53 Using cached botocore-1.40.49-py3-none-any.whl (14.1 MB) 00:47:53 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) 00:47:53 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:47:53 Using cached wrapt-1.17.3-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (82 kB) 00:47:53 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) 00:47:53 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 00:47:53 Using cached attrs-25.4.0-py3-none-any.whl (67 kB) 00:47:53 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 00:47:53 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB) 00:47:53 Installing collected packages: wrapt, python-dateutil, propcache, multidict, jmespath, fsspec, frozenlist, attrs, aioitertools, aiohappyeyeballs, yarl, botocore, aiosignal, aiohttp, aiobotocore, s3fs 00:47:55 00:47:55 Successfully installed aiobotocore-2.25.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.1 aioitertools-0.12.0 aiosignal-1.4.0 attrs-25.4.0 botocore-1.40.49 frozenlist-1.8.0 fsspec-2025.9.0 jmespath-1.0.1 multidict-6.7.0 propcache-0.4.1 python-dateutil-2.9.0.post0 s3fs-2025.9.0 wrapt-1.17.3 yarl-1.22.0 00:47:55 + pip install omero-py 00:47:55 Collecting omero-py 00:47:55 Using cached omero_py-5.21.2-py3-none-any.whl.metadata (6.5 kB) 00:47:55 Collecting appdirs (from omero-py) 00:47:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:47:55 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 00:47:55 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.3.4) 00:47:55 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.0.0) 00:47:55 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py) (6.0.3) 00:47:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:47:55 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) 00:47:55 Collecting portalocker (from omero-py) 00:47:55 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 00:47:55 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4) 00:47:55 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11) 00:47:55 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.5.0) 00:47:55 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2025.10.5) 00:47:55 Using cached omero_py-5.21.2-py3-none-any.whl (2.8 MB) 00:47:55 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:47:55 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:47:55 Installing collected packages: appdirs, portalocker, omero-py 00:47:57 00:47:57 Successfully installed appdirs-1.4.4 omero-py-5.21.2 portalocker-3.2.0 00:47:57 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:47:58 Collecting omero-metadata 00:47:58 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-8f3j6zj5/omero-metadata_3c61ae31653b48c9bd8ce53d1cdb5cf5 00:47:58 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-8f3j6zj5/omero-metadata_3c61ae31653b48c9bd8ce53d1cdb5cf5 00:47:58 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 7023056ad6a677fa64bc3bb92c2edda81ea282f0 00:47:58 Installing build dependencies: started 00:47:59 Installing build dependencies: finished with status 'done' 00:47:59 Getting requirements to build wheel: started 00:48:00 Getting requirements to build wheel: finished with status 'done' 00:48:00 Preparing metadata (pyproject.toml): started 00:48:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:00 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.2) 00:48:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 00:48:00 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 00:48:03 Collecting pandas (from omero-metadata) 00:48:03 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) 00:48:03 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:48:03 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:48:03 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.3.4) 00:48:03 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.0.0) 00:48:03 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:48:03 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) 00:48:03 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 00:48:03 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 00:48:03 Requirement already satisfied: python-dateutil>=2.8.2 in ./.venv3/lib64/python3.11/site-packages (from pandas->omero-metadata) (2.9.0.post0) 00:48:03 Collecting pytz>=2020.1 (from pandas->omero-metadata) 00:48:03 Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) 00:48:03 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 00:48:03 Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB) 00:48:03 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:48:03 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4) 00:48:03 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11) 00:48:03 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.5.0) 00:48:03 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2025.10.5) 00:48:03 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) 00:48:03 Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) 00:48:03 Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB) 00:48:03 Building wheels for collected packages: omero-metadata 00:48:03 Building wheel for omero-metadata (pyproject.toml): started 00:48:04 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:48:04 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=4c45058710f0922544063af9378cf4a0f3575724d737682dfd3d124b6628eba2 00:48:04 Stored in directory: /tmp/pip-ephem-wheel-cache-weq60m4t/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 00:48:04 Successfully built omero-metadata 00:48:04 Installing collected packages: pytz, tzdata, pandas, omero-metadata 00:48:08 00:48:08 Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 pytz-2025.2 tzdata-2025.2 00:48:08 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:48:09 Collecting omero-cli-render 00:48:09 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-359jyh33/omero-cli-render_11c1eb74e5404b179ca5b448c6c6b0ca 00:48:09 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-359jyh33/omero-cli-render_11c1eb74e5404b179ca5b448c6c6b0ca 00:48:09 Running command git checkout -b merge_ci --track origin/merge_ci 00:48:10 Switched to a new branch 'merge_ci' 00:48:10 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:48:10 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 68f4c01e6d4ff46b724afe0feff871e73739d9b0 00:48:10 Installing build dependencies: started 00:48:11 Installing build dependencies: finished with status 'done' 00:48:11 Getting requirements to build wheel: started 00:48:11 Getting requirements to build wheel: finished with status 'done' 00:48:11 Preparing metadata (pyproject.toml): started 00:48:11 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:11 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 00:48:11 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.2) 00:48:11 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:48:11 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:48:11 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.3.4) 00:48:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.0.0) 00:48:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:48:11 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) 00:48:11 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 00:48:11 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4) 00:48:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11) 00:48:11 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.5.0) 00:48:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2025.10.5) 00:48:11 Building wheels for collected packages: omero-cli-render 00:48:11 Building wheel for omero-cli-render (pyproject.toml): started 00:48:11 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:48:11 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19694 sha256=7258b405c4c7073d36cd026033dc57a5193c5b32bda1a17556f0a0c14a76d904 00:48:11 Stored in directory: /tmp/pip-ephem-wheel-cache-sgstma2x/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 00:48:11 Successfully built omero-cli-render 00:48:11 Installing collected packages: omero-cli-render 00:48:11 Successfully installed omero-cli-render-0.8.2.dev0 00:48:12 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:48:12 Collecting omero-cli-duplicate 00:48:12 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-725yd81d/omero-cli-duplicate_a9321f2cade740a4a21d13ef157e7f4c 00:48:12 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-725yd81d/omero-cli-duplicate_a9321f2cade740a4a21d13ef157e7f4c 00:48:13 Running command git checkout -b merge_ci --track origin/merge_ci 00:48:13 Switched to a new branch 'merge_ci' 00:48:13 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:48:13 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 5fea8d9332ad14693250a8df21935e90e00d83d6 00:48:13 Installing build dependencies: started 00:48:14 Installing build dependencies: finished with status 'done' 00:48:14 Getting requirements to build wheel: started 00:48:14 Getting requirements to build wheel: finished with status 'done' 00:48:14 Preparing metadata (pyproject.toml): started 00:48:14 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:14 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.2) 00:48:14 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:48:14 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:48:14 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.3.4) 00:48:14 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.0.0) 00:48:14 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 00:48:14 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:48:14 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) 00:48:14 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 00:48:14 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4) 00:48:14 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11) 00:48:14 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.5.0) 00:48:14 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2025.10.5) 00:48:14 Building wheels for collected packages: omero-cli-duplicate 00:48:14 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:48:15 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:48:15 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=efb7d8c99981c485197f3d145d993677cf799843daa3899076dc2a5ca7a28a2e 00:48:15 Stored in directory: /tmp/pip-ephem-wheel-cache-4sy8sky8/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 00:48:15 Successfully built omero-cli-duplicate 00:48:15 Installing collected packages: omero-cli-duplicate 00:48:15 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:48:15 + pip install omero-certificates 00:48:15 Collecting omero-certificates 00:48:15 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:48:15 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.2) 00:48:15 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:48:15 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:48:15 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.3.4) 00:48:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.0.0) 00:48:15 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:48:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:48:15 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) 00:48:15 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 00:48:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4) 00:48:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11) 00:48:15 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.5.0) 00:48:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2025.10.5) 00:48:15 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:48:15 Installing collected packages: omero-certificates 00:48:15 Successfully installed omero-certificates-0.4.0 00:48:15 + for x in *.tar.gz 00:48:15 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:48:16 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:48:16 Installing build dependencies: started 00:48:16 Installing build dependencies: finished with status 'done' 00:48:16 Getting requirements to build wheel: started 00:48:17 Getting requirements to build wheel: finished with status 'done' 00:48:17 Preparing metadata (pyproject.toml): started 00:48:17 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:17 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.2) 00:48:17 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:48:17 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:48:17 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.3.4) 00:48:17 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.0.0) 00:48:17 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:48:17 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:48:17 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) 00:48:17 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 00:48:17 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) 00:48:17 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) 00:48:17 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.5.0) 00:48:17 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2025.10.5) 00:48:17 Building wheels for collected packages: omero-dropbox 00:48:17 Building wheel for omero-dropbox (pyproject.toml): started 00:48:17 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:48:17 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=4ab596631b9aeb25aa850d886b48a9fa6184b7e18bcaf28aefd5c5a52e9524d8 00:48:17 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:48:17 Successfully built omero-dropbox 00:48:17 Installing collected packages: omero-dropbox 00:48:17 Successfully installed omero-dropbox-5.7.1.dev0 00:48:17 + for x in *.tar.gz 00:48:17 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 00:48:18 Processing ./omero_marshal-0.9.1.dev0.tar.gz 00:48:18 Installing build dependencies: started 00:48:19 Installing build dependencies: finished with status 'done' 00:48:19 Getting requirements to build wheel: started 00:48:19 Getting requirements to build wheel: finished with status 'done' 00:48:19 Preparing metadata (pyproject.toml): started 00:48:19 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:19 Building wheels for collected packages: omero_marshal 00:48:19 Building wheel for omero_marshal (pyproject.toml): started 00:48:19 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:48:19 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88121 sha256=074040a8cf7b5750da79bb1eb8a52e8e339ac7ca20e496d6e5cdf03074cd48c2 00:48:19 Stored in directory: /home/omero/.cache/pip/wheels/c6/fe/20/4909beb8cad01183b3ea19e12252f8ddec6c22448a9830df18 00:48:19 Successfully built omero_marshal 00:48:20 Installing collected packages: omero_marshal 00:48:20 Successfully installed omero_marshal-0.9.1.dev0 00:48:20 + for x in *.tar.gz 00:48:20 + pip install -U omero_py-5.21.3.dev0.tar.gz 00:48:20 Processing ./omero_py-5.21.3.dev0.tar.gz 00:48:20 Installing build dependencies: started 00:48:21 Installing build dependencies: finished with status 'done' 00:48:21 Getting requirements to build wheel: started 00:48:21 Getting requirements to build wheel: finished with status 'done' 00:48:21 Preparing metadata (pyproject.toml): started 00:48:22 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:22 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.4.4) 00:48:22 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (1.0.0) 00:48:22 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.3.4) 00:48:22 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (12.0.0) 00:48:22 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (6.0.3) 00:48:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.6.5) 00:48:22 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (2.32.5) 00:48:22 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.21.3.dev0) (3.2.0) 00:48:22 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.4.4) 00:48:22 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (3.11) 00:48:22 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2.5.0) 00:48:22 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.21.3.dev0) (2025.10.5) 00:48:22 Building wheels for collected packages: omero-py 00:48:22 Building wheel for omero-py (pyproject.toml): started 00:48:23 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:48:23 Created wheel for omero-py: filename=omero_py-5.21.3.dev0-py3-none-any.whl size=2785643 sha256=ee78aa2f14c402e6ec4b4137087f6d50ec7a9ad33188dfd429d9909300fbd221 00:48:23 Stored in directory: /home/omero/.cache/pip/wheels/b2/c3/69/7f46e8715cbcb96e4ea5a88612191cc747a1c318af7c8f681c 00:48:23 Successfully built omero-py 00:48:23 Installing collected packages: omero-py 00:48:23 Attempting uninstall: omero-py 00:48:23 Found existing installation: omero-py 5.21.2 00:48:23 Uninstalling omero-py-5.21.2: 00:48:23 Successfully uninstalled omero-py-5.21.2 00:48:25 Successfully installed omero-py-5.21.3.dev0 00:48:25 + for x in *.tar.gz 00:48:25 + pip install -U omero_scripts-5.9.2.dev0.tar.gz 00:48:25 Processing ./omero_scripts-5.9.2.dev0.tar.gz 00:48:25 Installing build dependencies: started 00:48:26 Installing build dependencies: finished with status 'done' 00:48:26 Getting requirements to build wheel: started 00:48:27 Getting requirements to build wheel: finished with status 'done' 00:48:27 Preparing metadata (pyproject.toml): started 00:48:27 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:27 Building wheels for collected packages: omero-scripts 00:48:27 Building wheel for omero-scripts (pyproject.toml): started 00:48:27 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:48:27 Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136847 sha256=0e89f0619a70d358ef9bca9351ff41b851d69ad2a8f4f1541ac5e7d810f941d6 00:48:27 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 00:48:27 Successfully built omero-scripts 00:48:27 Installing collected packages: omero-scripts 00:48:27 Successfully installed omero-scripts-5.9.2.dev0 00:48:27 + for x in *.tar.gz 00:48:27 + pip install -U omero_web-5.29.3.dev0.tar.gz 00:48:28 Processing ./omero_web-5.29.3.dev0.tar.gz 00:48:28 Installing build dependencies: started 00:48:29 Installing build dependencies: finished with status 'done' 00:48:29 Getting requirements to build wheel: started 00:48:29 Getting requirements to build wheel: finished with status 'done' 00:48:29 Preparing metadata (pyproject.toml): started 00:48:29 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:29 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (5.21.3.dev0) 00:48:29 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.29.3.dev0) 00:48:29 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) 00:48:30 Collecting Django<5.3,>=5.2.7 (from omero-web==5.29.3.dev0) 00:48:30 Using cached django-5.2.7-py3-none-any.whl.metadata (4.1 kB) 00:48:30 Collecting django-pipeline (from omero-web==5.29.3.dev0) 00:48:30 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:48:30 Collecting django-cors-headers==3.7.0 (from omero-web==5.29.3.dev0) 00:48:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:48:30 Collecting django-csp (from omero-web==5.29.3.dev0) 00:48:30 Using cached django_csp-4.0-py3-none-any.whl.metadata (3.6 kB) 00:48:30 Collecting whitenoise>=5.3.0 (from omero-web==5.29.3.dev0) 00:48:30 Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) 00:48:30 Collecting gunicorn>=19.3 (from omero-web==5.29.3.dev0) 00:48:30 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 00:48:30 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (0.9.1.dev0) 00:48:30 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (12.0.0) 00:48:30 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (2025.2) 00:48:30 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (3.2.0) 00:48:30 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.29.3.dev0) (25.0) 00:48:30 Collecting importlib-resources (from omero-web==5.29.3.dev0) 00:48:30 Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) 00:48:30 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.7->omero-web==5.29.3.dev0) 00:48:30 Using cached asgiref-3.10.0-py3-none-any.whl.metadata (9.3 kB) 00:48:30 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.7->omero-web==5.29.3.dev0) 00:48:30 Using cached sqlparse-0.5.3-py3-none-any.whl.metadata (3.9 kB) 00:48:30 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.4.4) 00:48:30 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (1.0.0) 00:48:30 Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.3.4) 00:48:30 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (6.0.3) 00:48:30 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.6.5) 00:48:30 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.32.5) 00:48:30 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.29.3.dev0) (65.5.1) 00:48:30 Collecting wheel (from django-pipeline->omero-web==5.29.3.dev0) 00:48:30 Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) 00:48:30 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.4.4) 00:48:30 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (3.11) 00:48:30 Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2.5.0) 00:48:30 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.29.3.dev0) (2025.10.5) 00:48:30 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:48:30 Using cached django-5.2.7-py3-none-any.whl (8.3 MB) 00:48:30 Using cached asgiref-3.10.0-py3-none-any.whl (24 kB) 00:48:30 Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) 00:48:30 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 00:48:30 Using cached sqlparse-0.5.3-py3-none-any.whl (44 kB) 00:48:30 Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) 00:48:30 Using cached django_csp-4.0-py3-none-any.whl (25 kB) 00:48:30 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:48:30 Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) 00:48:30 Using cached wheel-0.45.1-py3-none-any.whl (72 kB) 00:48:30 Building wheels for collected packages: omero-web 00:48:30 Building wheel for omero-web (pyproject.toml): started 00:48:31 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:48:31 Created wheel for omero-web: filename=omero_web-5.29.3.dev0-py3-none-any.whl size=2818201 sha256=97053e07354f0095ed1c5a98c203e7f0d4b7fc9b8b73a8f9fa8eaab881904f0d 00:48:31 Stored in directory: /home/omero/.cache/pip/wheels/22/5c/22/7feca3b3e1a26ce9fb6b16848ce79640a0079788b3a7d5450b 00:48:31 Successfully built omero-web 00:48:31 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-csp, django-cors-headers, omero-web 00:48:34 00:48:34 Successfully installed Django-5.2.7 asgiref-3.10.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-csp-4.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.29.3.dev0 sqlparse-0.5.3 wheel-0.45.1 whitenoise-6.11.0 00:48:34 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:34 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:48:34 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:48:34 --2025-10-18 00:48:34-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:34 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... 00:48:34 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. 00:48:34 HTTP request sent, awaiting response... 200 OK 00:48:34 Length: 125361 (122K) [text/plain] 00:48:34 Saving to: ‘Figure_To_Pdf.py’ 00:48:34 00:48:34 0K .......... .......... .......... .......... .......... 40% 3.88M 0s 00:48:34 50K .......... .......... .......... .......... .......... 81% 13.6M 0s 00:48:34 100K .......... .......... .. 100% 4.31M=0.02s 00:48:34 00:48:34 2025-10-18 00:48:34 (5.62 MB/s) - ‘Figure_To_Pdf.py’ saved [125361/125361] 00:48:34 00:48:34 + chmod 755 Figure_To_Pdf.py 00:48:34 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:48:34 + omero config set omero.db.name OMERO-server 00:48:36 + omero config set omero.db.host pg 00:48:37 + omero config set omero.db.user postgres 00:48:38 + omero config set omero.data.dir /home/omero/omero-server-data 00:48:39 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:48:40 + omero config set omero.db.poolsize 25 00:48:42 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:48:43 + omero config set omero.security.trustStorePassword changeit 00:48:44 + omero config set omero.mail.config true 00:48:45 + omero config set omero.mail.from qa@openmicroscopy.org.uk 00:48:47 + omero config set omero.mail.host smtp.dundee.ac.uk 00:48:48 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:48:49 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 00:48:50 + omero certificates 00:48:51 OpenSSL 3.2.2 4 Jun 2024 (Library: OpenSSL 3.2.2 4 Jun 2024) 00:48:51 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:48:51 + '[' false = true ']' 00:48:51 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:48:51 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:48:51 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:48:52 2025-10-18 00:48:52,174 [ omego.db] DEBUG dbcommand => upgrade 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG dbhost => localhost 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG dbname => OMERO-server 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG dbpass => omero 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG dbuser => omero 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG rootpass => omero 00:48:52 2025-10-18 00:48:52,175 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:48:52 2025-10-18 00:48:52,175 [omego.extern] INFO Executing : omero version 00:48:53 OMERO.py version: 00:48:53 OMERO.server version: 00:48:53 5.6.3-576-8ea64e120f-ice36-b552 00:48:53 5.21.3.dev0 00:48:53 2025-10-18 00:48:53,418 [omego.extern] INFO Completed [1.243 s] 00:48:53 2025-10-18 00:48:53,418 [omego.extern] DEBUG Using omero CLI from omero 00:48:53 2025-10-18 00:48:53,418 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:48:53 2025-10-18 00:48:53,419 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:53 2025-10-18 00:48:53,419 [omego.extern] INFO Executing : omero config get --show-password 00:48:54 2025-10-18 00:48:54,610 [omego.extern] INFO Completed [1.192 s] 00:48:54 2025-10-18 00:48:54,611 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:54 2025-10-18 00:48:54,611 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:48:54 2025-10-18 00:48:54,616 [omego.extern] INFO Completed [0.005 s] 00:48:54 2025-10-18 00:48:54,616 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.9\n' 00:48:54 2025-10-18 00:48:54,616 [ omego.db] INFO psql version: psql (PostgreSQL) 16.9 00:48:54 00:48:54 2025-10-18 00:48:54,616 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:54 2025-10-18 00:48:54,616 [omego.extern] INFO Executing : omero config get --show-password 00:48:55 2025-10-18 00:48:55,814 [omego.extern] INFO Completed [1.198 s] 00:48:55 2025-10-18 00:48:55,814 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:55 2025-10-18 00:48:55,814 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:48:55 2025-10-18 00:48:55,823 [omego.extern] INFO Completed [0.009 s] 00:48:55 2025-10-18 00:48:55,823 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n' 00:48:55 2025-10-18 00:48:55,824 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:55 2025-10-18 00:48:55,824 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:55 2025-10-18 00:48:55,824 [omego.extern] INFO Executing : omero config get --show-password 00:48:57 2025-10-18 00:48:57,037 [omego.extern] INFO Completed [1.213 s] 00:48:57 2025-10-18 00:48:57,037 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:57 2025-10-18 00:48:57,037 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:57 2025-10-18 00:48:57,047 [omego.extern] INFO Completed [0.010 s] 00:48:57 2025-10-18 00:48:57,047 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:48:57 2025-10-18 00:48:57,047 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:48:57 2025-10-18 00:48:57,048 [ omego.db] INFO Database is already at OMERO5.4__0 00:48:57 + export LANG=en_US.UTF-8 00:48:57 + LANG=en_US.UTF-8 00:48:57 + export LANGUAGE=en_US:en 00:48:57 + LANGUAGE=en_US:en 00:48:57 + export LC_ALL=en_US.UTF-8 00:48:57 + LC_ALL=en_US.UTF-8 00:48:57 + BUILD_ID=DONT_KILL_ME 00:48:57 + omero admin start 00:49:01 No descriptor given. Using etc/grid/default.xml 00:49:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:49:11 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:49:11 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:49:11 Waiting on startup. Use CTRL-C to exit 00:49:11 + omero admin waitup 00:49:12 Waiting on startup. Use CTRL-C to exit 00:49:13 + omero admin diagnostics 00:49:14 00:49:14 ================================================================================ 00:49:14 OMERO Diagnostics (admin) 00:49:14 ================================================================================ 00:49:14 00:49:14 Commands: java -version 11.0.25 (/usr/bin/java) 00:49:15 Commands: python -V 3.11.11 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:49:15 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:49:15 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:49:15 Commands: psql --version 16.9 (/usr/bin/psql) 00:49:15 Commands: openssl version 3.2.24 (/usr/bin/openssl) 00:49:15 00:49:15 Component: OMERO.py 5.21.3.dev0 00:49:15 Component: OMERO.server 5.6.3-576-8ea64e120f-ice36-b552 00:49:15 00:49:15 Server: icegridnode running 00:49:15 Server: Blitz-0 active (pid = 42792, enabled) 00:49:15 Server: Indexer-0 activating (enabled) 00:49:15 Server: OMERO.Glacier2 active (pid = 42824, enabled) 00:49:15 Server: OMERO.IceStorm active (pid = 42831, enabled) 00:49:15 Server: Processor-0 active (pid = 42848, enabled) 00:49:15 Server: Tables-0 active (pid = 42864, enabled) 00:49:15 00:49:15 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:49:15 Log files: Blitz-0.log 33.1 KB errors=0 warnings=1 00:49:15 Log files: DropBox.log n/a 00:49:15 Log files: FileServer.log n/a 00:49:15 Log files: Indexer-0.log 358 B 00:49:15 Log files: MonitorServer.log n/a 00:49:15 Log files: Processor-0.log 735 B 00:49:15 Log files: Tables-0.log 961 B 00:49:15 Log files: TestDropBox.log n/a 00:49:15 Log files: master.err empty 00:49:15 Log files: master.out 30.5 KB 00:49:15 Log files: Total size 0.07 MB 00:49:15 00:49:15 00:49:15 Environment:OMERO_HOME=(unset) 00:49:15 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:49:15 Environment:OMERO_NODE=(unset) 00:49:15 Environment:OMERO_MASTER=(unset) 00:49:15 Environment:OMERO_USERDIR=(unset) 00:49:15 Environment:OMERO_TMPDIR=(unset) 00:49:15 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:15 Environment:PYTHONPATH=(unset) 00:49:15 Environment:ICE_HOME=/opt/ice-3.6.5 00:49:15 Environment:LD_LIBRARY_PATH=(unset) 00:49:15 Environment:DYLD_LIBRARY_PATH=(unset) 00:49:15 00:49:15 OMERO SSL port:4064 00:49:15 OMERO TCP port:4063 00:49:15 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:49:15 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:49:15 00:49:15 JVM settings: Blitz-${index} -Xmx7200m 00:49:15 JVM settings: Indexer-${index} -Xmx4800m 00:49:15 JVM settings: PixelData-${index} -Xmx7200m 00:49:15 JVM settings: Repository-${index} -Xmx4800m 00:49:15 00:49:15 Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 18 October 2025 a22aaef0bda14c2b1410a816e8b66d0deb88d268 00:49:15 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 18 October 2025 a22aaef0bda14c2b1410a816e8b66d0deb88d268 00:49:15 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 18 October 2025 a22aaef0bda14c2b1410a816e8b66d0deb88d268 00:49:15 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.2-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/ome-common.jar OME Common Java 6.1.1-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/ome-xml.jar OME XML library 6.5.1-SNAPSHOT 18 October 2025 584ba7a1aa015b5e6b82f3155c77b564d30a19de 00:49:15 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-gateway.jar jar 5.10.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT 00:49:15 Jar: lib/server/omero-zarr-pixel-buffer-0.6.0-SNAPSHOT.jar OMERO Zarr Pixel Buffer 0.6.0-SNAPSHOT a5a9fde0aea7526368a085209a209969bbf08b60 00:49:15 + deactivate 00:49:15 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:49:15 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:15 + export PATH 00:49:15 + unset _OLD_VIRTUAL_PATH 00:49:15 + '[' -n '' ']' 00:49:15 + hash -r 00:49:15 + '[' -n '' ']' 00:49:15 + unset VIRTUAL_ENV 00:49:15 + unset VIRTUAL_ENV_PROMPT 00:49:15 + '[' '!' '' = nondestructive ']' 00:49:15 + unset -f deactivate 00:49:15 Finished: SUCCESS