18:21:54 Started by user devspace 18:21:54 Running as SYSTEM 18:21:54 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 18:21:54 [OMERO-server] $ /bin/bash -xe /tmp/jenkins781937082818376942.sh 18:21:54 + source /home/settings.env 18:21:54 ++ OMERO_DB_HOST=pg 18:21:54 ++ OMERO_DB_USER=postgres 18:21:54 ++ OMERO_DB_PASS= 18:21:54 ++ OMERO_ROOT_PASS=omero 18:21:54 ++ OMERO_DATA_DIR=/OMERO 18:21:54 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 18:21:54 + OMERO_DB_NAME=OMERO-server 18:21:54 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 18:21:54 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 18:21:54 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 18:21:54 + OMERO_DATA_DIR=/home/omero/omero-server-data 18:21:54 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 18:21:54 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 18:21:54 ++ deactivate nondestructive 18:21:54 ++ '[' -n '' ']' 18:21:54 ++ '[' -n '' ']' 18:21:54 ++ '[' -n /bin/bash -o -n '' ']' 18:21:54 ++ hash -r 18:21:54 ++ '[' -n '' ']' 18:21:54 ++ unset VIRTUAL_ENV 18:21:54 ++ '[' '!' nondestructive = nondestructive ']' 18:21:54 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 18:21:54 ++ export VIRTUAL_ENV 18:21:54 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:21:54 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:21:54 ++ export PATH 18:21:54 ++ '[' -n '' ']' 18:21:54 ++ '[' -z '' ']' 18:21:54 ++ _OLD_VIRTUAL_PS1= 18:21:54 ++ PS1='(.venv3) ' 18:21:54 ++ export PS1 18:21:54 ++ '[' -n /bin/bash -o -n '' ']' 18:21:54 ++ hash -r 18:21:54 + omero admin stop 18:22:11 Server not running 18:22:11 + echo not running 18:22:11 not running 18:22:11 + sleep 5 18:22:16 + deactivate 18:22:16 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 18:22:16 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:22:16 + export PATH 18:22:16 + unset _OLD_VIRTUAL_PATH 18:22:16 + '[' -n '' ']' 18:22:16 + '[' -n /bin/bash -o -n '' ']' 18:22:16 + hash -r 18:22:16 + '[' -n '' ']' 18:22:16 + unset VIRTUAL_ENV 18:22:16 + '[' '!' '' = nondestructive ']' 18:22:16 + unset -f deactivate 18:22:16 + rm -rf /home/omero/workspace/OMERO-server/.venv3 18:22:17 + python3 -m venv /home/omero/workspace/OMERO-server/.venv3 18:22:20 + '[' false = true ']' 18:22:20 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 18:22:20 Skipping PURGE_DATA:CleanDbAndRepo 18:22:20 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.7.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.19.6.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.8.4.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.27.3.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 18:22:23 Copied 1 artifact from "OMERO-build" build number 186 18:22:24 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 183 18:22:24 Copied 2 artifacts from "OMERO-build-build" build number 191 18:22:24 [OMERO-server] $ /bin/bash -xe /tmp/jenkins6866970010373641092.sh 18:22:24 + source /home/settings.env 18:22:24 ++ OMERO_DB_HOST=pg 18:22:24 ++ OMERO_DB_USER=postgres 18:22:24 ++ OMERO_DB_PASS= 18:22:24 ++ OMERO_ROOT_PASS=omero 18:22:24 ++ OMERO_DATA_DIR=/OMERO 18:22:24 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 18:22:24 + OMERO_DB_NAME=OMERO-server 18:22:24 + OMERO_DATA_DIR=/home/omero/omero-server-data 18:22:24 + mkdir -p /home/omero/omero-server-data 18:22:24 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 18:22:24 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 18:22:24 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 18:22:24 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 18:22:24 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 18:22:24 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 18:22:24 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 18:22:24 ++ ls OMERO.server-5.6.3-510-e314753ae8-ice36.zip 18:22:24 + ZIP=OMERO.server-5.6.3-510-e314753ae8-ice36.zip 18:22:24 + '[' '!' -z '' ']' 18:22:24 + DIST=OMERO.server-5.6.3-510-e314753ae8-ice36 18:22:24 + unzip OMERO.server-5.6.3-510-e314753ae8-ice36.zip 18:22:24 Archive: OMERO.server-5.6.3-510-e314753ae8-ice36.zip 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/blitz/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/grid/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/profiles/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/error/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/grid/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/luts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/luts/janelia/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/luts/ncsa_paledit/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/luts/wcif/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/analysis_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/annotation_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/export_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/figure_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/import_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/scripts/omero/util_scripts/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/server/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/share/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/share/licenses/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/misc/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__1/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__10/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__11/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__2/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__3/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__4/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__5/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__6/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__7/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__8/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3A__9/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3__4/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3__5/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3__6/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO3__7/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4.1__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4.2__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4.2__0/t/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4.3__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4.4__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO4__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.0__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.1__1/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.2__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.3__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4DEV__1/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4DEV__2/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4DEV__3/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/ 18:22:24 creating: OMERO.server-5.6.3-510-e314753ae8-ice36/var/ 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/LICENSE.txt 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/backup.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/blitz/mail-senders.example 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/blitz/mail-server.example 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/build.properties 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/env.bat 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/env.sh 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/hibernate.properties 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/ice.config 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/logback-cli.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/logback-indexing-cli.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/logback-indexing.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/logback.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/mime.types 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/node1.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/node2.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/omero.properties 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/profiles/psql 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/rollover.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/Windows.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/error/maintainance.html 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/grid/README 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/grid/default.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/grid/templates.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/grid/windefault.xml 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/ice.config 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/internal.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/master.cfg 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/templates/robot.template 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/etc/testdropbox.config 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/history.rst 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/OMEZarrReader.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/activation.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aggdesigner-algorithm.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aircompressor.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/annotations.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/antlr.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aopalliance.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/avatica-core.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/avatica-metrics.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aws-java-sdk-core.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aws-java-sdk-kms.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/aws-java-sdk-s3.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/base.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-all.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-anim.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-awt-util.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-bridge.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-codec.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-constants.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-css.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-dom.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-ext.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-extension.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-gui-util.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-gvt.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-i18n.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-parser.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-rasterizer-ext.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-rasterizer.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-script.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-slideshow.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-squiggle-ext.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-squiggle.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-svg-dom.jar 18:22:24 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/lib/client/batik-svgbrowser.jar 18:22:24 inflating: 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OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/psql-footer.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/psql-header.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/schema.sql 18:22:26 inflating: OMERO.server-5.6.3-510-e314753ae8-ice36/sql/psql/OMERO5.4__0/views.sql 18:22:26 + rm -f OMERO.server-5.6.3-510-e314753ae8-ice36.zip 18:22:26 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-510-e314753ae8-ice36 /home/omero/workspace/OMERO-server/OMERO.server 18:22:26 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 18:22:26 ++ deactivate nondestructive 18:22:26 ++ '[' -n '' ']' 18:22:26 ++ '[' -n '' ']' 18:22:26 ++ '[' -n /bin/bash -o -n '' ']' 18:22:26 ++ hash -r 18:22:26 ++ '[' -n '' ']' 18:22:26 ++ unset VIRTUAL_ENV 18:22:26 ++ '[' '!' nondestructive = nondestructive ']' 18:22:26 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 18:22:26 ++ export VIRTUAL_ENV 18:22:26 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:22:26 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:22:26 ++ export PATH 18:22:26 ++ '[' -n '' ']' 18:22:26 ++ '[' -z '' ']' 18:22:26 ++ _OLD_VIRTUAL_PS1= 18:22:26 ++ PS1='(.venv3) ' 18:22:26 ++ export PS1 18:22:26 ++ '[' -n /bin/bash -o -n '' ']' 18:22:26 ++ hash -r 18:22:26 + pip install https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl 18:22:27 Collecting zeroc-ice==3.6.5 18:22:28 Downloading https://github.com/glencoesoftware/zeroc-ice-py-rhel9-x86_64/releases/download/20230830/zeroc_ice-3.6.5-cp39-cp39-linux_x86_64.whl (31.3 MB) 18:22:29 Installing collected packages: zeroc-ice 18:22:30 Successfully installed zeroc-ice-3.6.5 18:22:30 + pip install -U pip future 18:22:30 Requirement already satisfied: pip in ./.venv3/lib/python3.9/site-packages (21.2.3) 18:22:31 Collecting pip 18:22:31 Using cached pip-24.2-py3-none-any.whl (1.8 MB) 18:22:31 Collecting future 18:22:31 Using cached future-1.0.0-py3-none-any.whl (491 kB) 18:22:31 Installing collected packages: pip, future 18:22:31 Attempting uninstall: pip 18:22:31 Found existing installation: pip 21.2.3 18:22:31 Uninstalling pip-21.2.3: 18:22:31 Successfully uninstalled pip-21.2.3 18:22:32 Successfully installed future-1.0.0 pip-24.2 18:22:32 + pip install markdown 18:22:33 Collecting markdown 18:22:33 Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) 18:22:33 Collecting importlib-metadata>=4.4 (from markdown) 18:22:33 Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) 18:22:33 Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown) 18:22:33 Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB) 18:22:33 Using cached Markdown-3.7-py3-none-any.whl (106 kB) 18:22:33 Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) 18:22:33 Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB) 18:22:33 Installing collected packages: zipp, importlib-metadata, markdown 18:22:33 Successfully installed importlib-metadata-8.5.0 markdown-3.7 zipp-3.20.2 18:22:33 + pip install reportlab 18:22:34 Collecting reportlab 18:22:34 Using cached reportlab-4.2.2-py3-none-any.whl.metadata (1.4 kB) 18:22:34 Collecting pillow>=9.0.0 (from reportlab) 18:22:34 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) 18:22:35 Collecting chardet (from reportlab) 18:22:35 Using cached chardet-5.2.0-py3-none-any.whl.metadata (3.4 kB) 18:22:35 Using cached reportlab-4.2.2-py3-none-any.whl (1.9 MB) 18:22:35 Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) 18:22:35 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 18:22:35 Installing collected packages: pillow, chardet, reportlab 18:22:36 Successfully installed chardet-5.2.0 pillow-10.4.0 reportlab-4.2.2 18:22:36 + pip install omego 18:22:37 Collecting omego 18:22:37 Using cached omego-0.7.0-py3-none-any.whl 18:22:37 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omego) (1.0.0) 18:22:37 Collecting yaclifw>=0.1.1 (from omego) 18:22:37 Using cached yaclifw-0.2.0-py3-none-any.whl 18:22:37 Collecting six (from yaclifw>=0.1.1->omego) 18:22:37 Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) 18:22:37 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 18:22:37 Installing collected packages: six, yaclifw, omego 18:22:37 Successfully installed omego-0.7.0 six-1.16.0 yaclifw-0.2.0 18:22:37 + pip install tables 18:22:38 Collecting tables 18:22:38 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.3 kB) 18:22:38 Collecting numpy>=1.19.0 (from tables) 18:22:38 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) 18:22:38 Collecting numexpr>=2.6.2 (from tables) 18:22:39 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (1.2 kB) 18:22:39 Collecting packaging (from tables) 18:22:39 Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) 18:22:39 Collecting py-cpuinfo (from tables) 18:22:39 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 18:22:39 Collecting blosc2>=2.3.0 (from tables) 18:22:39 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.2 kB) 18:22:39 Collecting ndindex>=1.4 (from blosc2>=2.3.0->tables) 18:22:39 Using cached ndindex-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.4 kB) 18:22:39 Collecting msgpack (from blosc2>=2.3.0->tables) 18:22:39 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB) 18:22:39 Using cached tables-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) 18:22:40 Using cached blosc2-2.5.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.4 MB) 18:22:40 Using cached numexpr-2.10.1-cp39-cp39-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (404 kB) 18:22:40 Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) 18:22:40 Using cached packaging-24.1-py3-none-any.whl (53 kB) 18:22:40 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 18:22:40 Using cached ndindex-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (466 kB) 18:22:40 Using cached msgpack-1.1.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (377 kB) 18:22:40 Installing collected packages: py-cpuinfo, packaging, numpy, ndindex, msgpack, numexpr, blosc2, tables 18:22:43 Successfully installed blosc2-2.5.1 msgpack-1.1.0 ndindex-1.9.1 numexpr-2.10.1 numpy-2.0.2 packaging-24.1 py-cpuinfo-9.0.0 tables-3.9.2 18:22:43 + pip install jinja2 18:22:44 Collecting jinja2 18:22:44 Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) 18:22:44 Collecting MarkupSafe>=2.0 (from jinja2) 18:22:44 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) 18:22:44 Using cached jinja2-3.1.4-py3-none-any.whl (133 kB) 18:22:44 Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) 18:22:44 Installing collected packages: MarkupSafe, jinja2 18:22:44 Successfully installed MarkupSafe-2.1.5 jinja2-3.1.4 18:22:44 + pip install omero-py 18:22:45 Collecting omero-py 18:22:45 Using cached omero_py-5.19.5-py3-none-any.whl.metadata (6.3 kB) 18:22:45 Collecting urllib3<2 (from omero-py) 18:22:45 Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) 18:22:45 Collecting appdirs (from omero-py) 18:22:45 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 18:22:45 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py) (1.0.0) 18:22:45 Collecting numpy<2 (from omero-py) 18:22:45 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (61 kB) 18:22:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py) (10.4.0) 18:22:45 Collecting PyYAML (from omero-py) 18:22:45 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) 18:22:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py) (3.6.5) 18:22:46 Collecting requests (from omero-py) 18:22:46 Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) 18:22:46 Collecting portalocker (from omero-py) 18:22:46 Using cached portalocker-2.10.1-py3-none-any.whl.metadata (8.5 kB) 18:22:46 Collecting charset-normalizer<4,>=2 (from requests->omero-py) 18:22:46 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) 18:22:46 Collecting idna<4,>=2.5 (from requests->omero-py) 18:22:46 Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) 18:22:46 Collecting certifi>=2017.4.17 (from requests->omero-py) 18:22:46 Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) 18:22:46 Using cached omero_py-5.19.5-py3-none-any.whl (2.8 MB) 18:22:46 Using cached numpy-1.26.4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (18.2 MB) 18:22:46 Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) 18:22:46 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 18:22:46 Using cached portalocker-2.10.1-py3-none-any.whl (18 kB) 18:22:46 Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (737 kB) 18:22:46 Using cached requests-2.32.3-py3-none-any.whl (64 kB) 18:22:47 Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) 18:22:47 Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) 18:22:47 Using cached idna-3.10-py3-none-any.whl (70 kB) 18:22:47 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, numpy, idna, charset-normalizer, certifi, requests, omero-py 18:22:47 Attempting uninstall: numpy 18:22:47 Found existing installation: numpy 2.0.2 18:22:47 Uninstalling numpy-2.0.2: 18:22:47 Successfully uninstalled numpy-2.0.2 18:22:51 Successfully installed PyYAML-6.0.2 appdirs-1.4.4 certifi-2024.8.30 charset-normalizer-3.3.2 idna-3.10 numpy-1.26.4 omero-py-5.19.5 portalocker-2.10.1 requests-2.32.3 urllib3-1.26.20 18:22:51 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 18:22:51 Collecting omero-metadata 18:22:51 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-n5hfe1lu/omero-metadata_d1fc0a8773cb41afa1700dba5a0f156e 18:22:51 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-n5hfe1lu/omero-metadata_d1fc0a8773cb41afa1700dba5a0f156e 18:22:54 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit d28c0f4cf31753e89ccd241aae106cea4ea1d782 18:22:54 Installing build dependencies: started 18:22:56 Installing build dependencies: finished with status 'done' 18:22:56 Getting requirements to build wheel: started 18:22:56 Getting requirements to build wheel: finished with status 'done' 18:22:56 Preparing metadata (pyproject.toml): started 18:22:57 Preparing metadata (pyproject.toml): finished with status 'done' 18:22:57 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (5.19.5) 18:22:57 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (6.0.2) 18:22:57 Requirement already satisfied: jinja2 in ./.venv3/lib/python3.9/site-packages (from omero-metadata) (3.1.4) 18:22:57 Collecting pandas (from omero-metadata) 18:22:57 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (89 kB) 18:22:57 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.20) 18:22:57 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 18:22:57 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 18:22:57 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (1.26.4) 18:22:57 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (10.4.0) 18:22:57 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 18:22:57 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.3) 18:22:57 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-metadata) (2.10.1) 18:22:57 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib/python3.9/site-packages (from jinja2->omero-metadata) (2.1.5) 18:22:57 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 18:22:57 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 18:22:57 Collecting pytz>=2020.1 (from pandas->omero-metadata) 18:22:57 Using cached pytz-2024.2-py2.py3-none-any.whl.metadata (22 kB) 18:22:57 Collecting tzdata>=2022.7 (from pandas->omero-metadata) 18:22:57 Using cached tzdata-2024.2-py2.py3-none-any.whl.metadata (1.4 kB) 18:22:57 Requirement already satisfied: six>=1.5 in ./.venv3/lib/python3.9/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.16.0) 18:22:57 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.3.2) 18:22:57 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.10) 18:22:57 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2024.8.30) 18:22:57 Using cached pandas-2.2.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (13.1 MB) 18:22:58 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 18:22:58 Using cached pytz-2024.2-py2.py3-none-any.whl (508 kB) 18:22:58 Using cached tzdata-2024.2-py2.py3-none-any.whl (346 kB) 18:22:58 Building wheels for collected packages: omero-metadata 18:22:58 Building wheel for omero-metadata (pyproject.toml): started 18:22:58 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 18:22:58 Created wheel for omero-metadata: filename=omero_metadata-0.12.1.dev0-py3-none-any.whl size=39187 sha256=ae2b9bb6eba3895b40a21cec5337063f50da14ad45dad5182620cc3b9a5ce81c 18:22:58 Stored in directory: /tmp/pip-ephem-wheel-cache-23xvp2ly/wheels/64/09/47/3b86b706f8f6f4bec1b7fd6641d2e4a09814e754fa4c85c82d 18:22:58 Successfully built omero-metadata 18:22:58 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata 18:23:03 Successfully installed omero-metadata-0.12.1.dev0 pandas-2.2.3 python-dateutil-2.9.0.post0 pytz-2024.2 tzdata-2024.2 18:23:03 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 18:23:03 Collecting omero-cli-render 18:23:03 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-un9lhlvb/omero-cli-render_8e82b6c8070941e3976bf2b370af527e 18:23:03 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-un9lhlvb/omero-cli-render_8e82b6c8070941e3976bf2b370af527e 18:23:04 Running command git checkout -b merge_ci --track origin/merge_ci 18:23:04 Switched to a new branch 'merge_ci' 18:23:04 branch 'merge_ci' set up to track 'origin/merge_ci'. 18:23:04 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 29d5f4cb106b19030b5b61f63ca7e164db7c5e0f 18:23:04 Installing build dependencies: started 18:23:06 Installing build dependencies: finished with status 'done' 18:23:06 Getting requirements to build wheel: started 18:23:06 Getting requirements to build wheel: finished with status 'done' 18:23:06 Preparing metadata (pyproject.toml): started 18:23:06 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:06 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (6.0.2) 18:23:06 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-cli-render) (5.19.5) 18:23:06 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.20) 18:23:06 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 18:23:06 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 18:23:07 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.26.4) 18:23:07 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (10.4.0) 18:23:07 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 18:23:07 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.3) 18:23:07 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.10.1) 18:23:07 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.3.2) 18:23:07 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.10) 18:23:07 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2024.8.30) 18:23:07 Building wheels for collected packages: omero-cli-render 18:23:07 Building wheel for omero-cli-render (pyproject.toml): started 18:23:07 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 18:23:07 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=18031 sha256=e7dd7aa92cc2bff1223295cd145768ac3b002b6d48e8b85dacb4034cce95b875 18:23:07 Stored in directory: /tmp/pip-ephem-wheel-cache-zy_hjm_d/wheels/58/32/1b/746489b3c7c17a98c6cd7195bdd3b426dd4137caeb1045a994 18:23:07 Successfully built omero-cli-render 18:23:07 Installing collected packages: omero-cli-render 18:23:07 Successfully installed omero-cli-render-0.8.2.dev0 18:23:07 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 18:23:07 Collecting omero-cli-duplicate 18:23:07 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-d6549wci/omero-cli-duplicate_2961ce15d8184e408a00d489a77695e7 18:23:07 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-d6549wci/omero-cli-duplicate_2961ce15d8184e408a00d489a77695e7 18:23:08 Running command git checkout -b merge_ci --track origin/merge_ci 18:23:09 Switched to a new branch 'merge_ci' 18:23:09 branch 'merge_ci' set up to track 'origin/merge_ci'. 18:23:09 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit f7de5480adfa1556989b3100c36d1605880e6923 18:23:09 Installing build dependencies: started 18:23:10 Installing build dependencies: finished with status 'done' 18:23:10 Getting requirements to build wheel: started 18:23:10 Getting requirements to build wheel: finished with status 'done' 18:23:10 Preparing metadata (pyproject.toml): started 18:23:11 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:11 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib/python3.9/site-packages (from omero-cli-duplicate) (5.19.5) 18:23:11 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.20) 18:23:11 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 18:23:11 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 18:23:11 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.26.4) 18:23:11 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (10.4.0) 18:23:11 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.2) 18:23:11 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 18:23:11 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.3) 18:23:11 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.10.1) 18:23:11 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.3.2) 18:23:11 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.10) 18:23:11 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2024.8.30) 18:23:11 Building wheels for collected packages: omero-cli-duplicate 18:23:11 Building wheel for omero-cli-duplicate (pyproject.toml): started 18:23:11 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 18:23:11 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11442 sha256=11949a82b2bd22263e5baf5194096ab33274fdb94ac7749dbe90445d592f8629 18:23:11 Stored in directory: /tmp/pip-ephem-wheel-cache-apg2ublv/wheels/f1/55/ac/0cb8b093a4c417e5157143839711e7613efa64eaa21c29ef84 18:23:11 Successfully built omero-cli-duplicate 18:23:11 Installing collected packages: omero-cli-duplicate 18:23:11 Successfully installed omero-cli-duplicate-0.4.1.dev0 18:23:11 + pip install omero-certificates 18:23:12 Collecting omero-certificates 18:23:12 Using cached omero_certificates-0.3.2-py3-none-any.whl.metadata (3.7 kB) 18:23:12 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib/python3.9/site-packages (from omero-certificates) (5.19.5) 18:23:12 Collecting distro==1.8.0 (from omero-certificates) 18:23:12 Using cached distro-1.8.0-py3-none-any.whl.metadata (6.9 kB) 18:23:12 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.20) 18:23:12 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 18:23:12 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 18:23:12 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (1.26.4) 18:23:12 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (10.4.0) 18:23:12 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.2) 18:23:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 18:23:12 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.3) 18:23:12 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.6.0->omero-certificates) (2.10.1) 18:23:12 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.3.2) 18:23:12 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.10) 18:23:12 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2024.8.30) 18:23:12 Using cached omero_certificates-0.3.2-py3-none-any.whl (13 kB) 18:23:12 Using cached distro-1.8.0-py3-none-any.whl (20 kB) 18:23:12 Installing collected packages: distro, omero-certificates 18:23:12 Successfully installed distro-1.8.0 omero-certificates-0.3.2 18:23:12 + for x in *.tar.gz 18:23:12 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 18:23:12 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 18:23:12 Installing build dependencies: started 18:23:14 Installing build dependencies: finished with status 'done' 18:23:14 Getting requirements to build wheel: started 18:23:14 Getting requirements to build wheel: finished with status 'done' 18:23:14 Preparing metadata (pyproject.toml): started 18:23:15 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:15 Requirement already satisfied: omero-py in ./.venv3/lib/python3.9/site-packages (from omero-dropbox==5.7.1.dev0) (5.19.5) 18:23:15 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.20) 18:23:15 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 18:23:15 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 18:23:15 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.26.4) 18:23:15 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (10.4.0) 18:23:15 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.2) 18:23:15 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 18:23:15 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.3) 18:23:15 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.10.1) 18:23:15 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.3.2) 18:23:15 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.10) 18:23:15 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2024.8.30) 18:23:15 Building wheels for collected packages: omero-dropbox 18:23:15 Building wheel for omero-dropbox (pyproject.toml): started 18:23:15 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 18:23:15 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49056 sha256=50f6e60d358dc0b12b48beacae5c333b639b7e2b7eb854c1ec66e7f77873c2cc 18:23:15 Stored in directory: /home/omero/.cache/pip/wheels/eb/76/85/58476368b176f793423899407c96293c22f9c9edc28cf54079 18:23:15 Successfully built omero-dropbox 18:23:15 Installing collected packages: omero-dropbox 18:23:15 Successfully installed omero-dropbox-5.7.1.dev0 18:23:15 + for x in *.tar.gz 18:23:15 + pip install -U omero_marshal-0.9.1.dev0.tar.gz 18:23:15 Processing ./omero_marshal-0.9.1.dev0.tar.gz 18:23:16 Installing build dependencies: started 18:23:17 Installing build dependencies: finished with status 'done' 18:23:17 Getting requirements to build wheel: started 18:23:17 Getting requirements to build wheel: finished with status 'done' 18:23:17 Preparing metadata (pyproject.toml): started 18:23:18 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:18 Building wheels for collected packages: omero_marshal 18:23:18 Building wheel for omero_marshal (pyproject.toml): started 18:23:18 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 18:23:18 Created wheel for omero_marshal: filename=omero_marshal-0.9.1.dev0-py3-none-any.whl size=88030 sha256=40f0504a884d68b2eb74ae9f1f9c94512ad62a9257db1ea8674cbb8b182a1954 18:23:18 Stored in directory: /home/omero/.cache/pip/wheels/8b/40/f1/dbed071eff57c96e0824ead2a420a7a1a080f7fbdfe0431d7f 18:23:18 Successfully built omero_marshal 18:23:18 Installing collected packages: omero_marshal 18:23:18 Successfully installed omero_marshal-0.9.1.dev0 18:23:18 + for x in *.tar.gz 18:23:18 + pip install -U omero_py-5.19.6.dev0.tar.gz 18:23:19 Processing ./omero_py-5.19.6.dev0.tar.gz 18:23:19 Installing build dependencies: started 18:23:21 Installing build dependencies: finished with status 'done' 18:23:21 Getting requirements to build wheel: started 18:23:21 Getting requirements to build wheel: finished with status 'done' 18:23:21 Preparing metadata (pyproject.toml): started 18:23:21 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:21 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.20) 18:23:21 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.4.4) 18:23:21 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.0.0) 18:23:21 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (1.26.4) 18:23:21 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (10.4.0) 18:23:21 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (6.0.2) 18:23:21 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (3.6.5) 18:23:21 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.32.3) 18:23:21 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-py==5.19.6.dev0) (2.10.1) 18:23:21 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.3.2) 18:23:21 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (3.10) 18:23:21 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py==5.19.6.dev0) (2024.8.30) 18:23:21 Building wheels for collected packages: omero-py 18:23:21 Building wheel for omero-py (pyproject.toml): started 18:23:22 Building wheel for omero-py (pyproject.toml): finished with status 'done' 18:23:22 Created wheel for omero-py: filename=omero_py-5.19.6.dev0-py3-none-any.whl size=2783136 sha256=a6457d61ba534c0f7ab7c0052eb20b905b0f82d639d15d45ff2c3df6c164c62f 18:23:22 Stored in directory: /home/omero/.cache/pip/wheels/80/e5/37/a3ff2b54d2fa16a058bb39e8eb6b77b050109520fb9f16931d 18:23:22 Successfully built omero-py 18:23:22 Installing collected packages: omero-py 18:23:22 Attempting uninstall: omero-py 18:23:22 Found existing installation: omero-py 5.19.5 18:23:23 Uninstalling omero-py-5.19.5: 18:23:23 Successfully uninstalled omero-py-5.19.5 18:23:25 Successfully installed omero-py-5.19.6.dev0 18:23:25 + for x in *.tar.gz 18:23:25 + pip install -U omero_scripts-5.8.4.dev0.tar.gz 18:23:25 Processing ./omero_scripts-5.8.4.dev0.tar.gz 18:23:25 Installing build dependencies: started 18:23:28 Installing build dependencies: finished with status 'done' 18:23:28 Getting requirements to build wheel: started 18:23:28 Getting requirements to build wheel: finished with status 'done' 18:23:28 Preparing metadata (pyproject.toml): started 18:23:28 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:28 Building wheels for collected packages: omero-scripts 18:23:28 Building wheel for omero-scripts (pyproject.toml): started 18:23:28 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 18:23:28 Created wheel for omero-scripts: filename=omero_scripts-5.8.4.dev0-py3-none-any.whl size=116644 sha256=1d8db2d7f13812eaefd798c061aab45e8d7c20f18455e8fe121a66dd69970147 18:23:28 Stored in directory: /home/omero/.cache/pip/wheels/50/80/aa/1e175e4f2a5b0a5343d01937a727d990d08c8e12000390ad9c 18:23:28 Successfully built omero-scripts 18:23:29 Installing collected packages: omero-scripts 18:23:29 Successfully installed omero-scripts-5.8.4.dev0 18:23:29 + for x in *.tar.gz 18:23:29 + pip install -U omero_web-5.27.3.dev0.tar.gz 18:23:29 Processing ./omero_web-5.27.3.dev0.tar.gz 18:23:29 Installing build dependencies: started 18:23:31 Installing build dependencies: finished with status 'done' 18:23:31 Getting requirements to build wheel: started 18:23:31 Getting requirements to build wheel: finished with status 'done' 18:23:31 Preparing metadata (pyproject.toml): started 18:23:32 Preparing metadata (pyproject.toml): finished with status 'done' 18:23:32 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (5.19.6.dev0) 18:23:32 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.27.3.dev0) 18:23:32 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl.metadata (17 kB) 18:23:32 Collecting Django<4.3,>=4.2.3 (from omero-web==5.27.3.dev0) 18:23:32 Using cached Django-4.2.16-py3-none-any.whl.metadata (4.1 kB) 18:23:32 Collecting django-pipeline==2.1.0 (from omero-web==5.27.3.dev0) 18:23:32 Using cached django_pipeline-2.1.0-py3-none-any.whl.metadata (12 kB) 18:23:32 Collecting django-cors-headers==3.7.0 (from omero-web==5.27.3.dev0) 18:23:32 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 18:23:32 Collecting django-csp (from omero-web==5.27.3.dev0) 18:23:32 Using cached django_csp-3.8-py3-none-any.whl.metadata (2.7 kB) 18:23:32 Collecting whitenoise>=5.3.0 (from omero-web==5.27.3.dev0) 18:23:32 Using cached whitenoise-6.7.0-py3-none-any.whl.metadata (3.7 kB) 18:23:32 Collecting gunicorn>=19.3 (from omero-web==5.27.3.dev0) 18:23:32 Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) 18:23:32 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (0.9.1.dev0) 18:23:32 Requirement already satisfied: Pillow in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (10.4.0) 18:23:32 Requirement already satisfied: pytz in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2024.2) 18:23:32 Requirement already satisfied: portalocker in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (2.10.1) 18:23:32 Requirement already satisfied: packaging in ./.venv3/lib/python3.9/site-packages (from omero-web==5.27.3.dev0) (24.1) 18:23:32 Collecting asgiref<4,>=3.6.0 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 18:23:32 Using cached asgiref-3.8.1-py3-none-any.whl.metadata (9.3 kB) 18:23:33 Collecting sqlparse>=0.3.1 (from Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 18:23:33 Using cached sqlparse-0.5.1-py3-none-any.whl.metadata (3.9 kB) 18:23:33 Requirement already satisfied: urllib3<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.20) 18:23:33 Requirement already satisfied: appdirs in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.4.4) 18:23:33 Requirement already satisfied: future in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.0.0) 18:23:33 Requirement already satisfied: numpy<2 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (1.26.4) 18:23:33 Requirement already satisfied: PyYAML in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (6.0.2) 18:23:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.6.5) 18:23:33 Requirement already satisfied: requests in ./.venv3/lib/python3.9/site-packages (from omero-py>=5.19.0->omero-web==5.27.3.dev0) (2.32.3) 18:23:33 Collecting typing-extensions>=4 (from asgiref<4,>=3.6.0->Django<4.3,>=4.2.3->omero-web==5.27.3.dev0) 18:23:33 Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) 18:23:33 Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.3.2) 18:23:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (3.10) 18:23:33 Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib/python3.9/site-packages (from requests->omero-py>=5.19.0->omero-web==5.27.3.dev0) (2024.8.30) 18:23:33 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 18:23:33 Using cached django_pipeline-2.1.0-py3-none-any.whl (38 kB) 18:23:33 Using cached concurrent_log_handler-0.9.25-py3-none-any.whl (25 kB) 18:23:33 Using cached Django-4.2.16-py3-none-any.whl (8.0 MB) 18:23:33 Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) 18:23:33 Using cached whitenoise-6.7.0-py3-none-any.whl (19 kB) 18:23:33 Using cached django_csp-3.8-py3-none-any.whl (17 kB) 18:23:33 Using cached asgiref-3.8.1-py3-none-any.whl (23 kB) 18:23:33 Using cached sqlparse-0.5.1-py3-none-any.whl (44 kB) 18:23:33 Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) 18:23:33 Building wheels for collected packages: omero-web 18:23:33 Building wheel for omero-web (pyproject.toml): started 18:23:34 Building wheel for omero-web (pyproject.toml): finished with status 'done' 18:23:34 Created wheel for omero-web: filename=omero_web-5.27.3.dev0-py3-none-any.whl size=2766665 sha256=013b87684ca592c372fc149de310d03e69004be58060cca77333cfed8532239e 18:23:34 Stored in directory: /home/omero/.cache/pip/wheels/ae/1e/5f/7127f5403b089e5e8280a504b3d30303e78d1102aa8854c22b 18:23:34 Successfully built omero-web 18:23:34 Installing collected packages: django-pipeline, whitenoise, typing-extensions, sqlparse, gunicorn, concurrent-log-handler, asgiref, Django, django-csp, django-cors-headers, omero-web 18:23:37 Successfully installed Django-4.2.16 asgiref-3.8.1 concurrent-log-handler-0.9.25 django-cors-headers-3.7.0 django-csp-3.8 django-pipeline-2.1.0 gunicorn-23.0.0 omero-web-5.27.3.dev0 sqlparse-0.5.1 typing-extensions-4.12.2 whitenoise-6.7.0 18:23:37 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 18:23:38 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 18:23:38 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 18:23:38 --2024-09-25 18:23:38-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 18:23:38 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.109.133, 185.199.108.133, 185.199.111.133, ... 18:23:38 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.109.133|:443... connected. 18:23:38 HTTP request sent, awaiting response... 200 OK 18:23:38 Length: 98962 (97K) [text/plain] 18:23:38 Saving to: ‘Figure_To_Pdf.py’ 18:23:38 18:23:38 0K .......... .......... .......... .......... .......... 51% 716K 0s 18:23:39 50K .......... .......... .......... .......... ...... 100% 2.69M=0.09s 18:23:39 18:23:39 2024-09-25 18:23:39 (1.09 MB/s) - ‘Figure_To_Pdf.py’ saved [98962/98962] 18:23:39 18:23:39 + chmod 755 Figure_To_Pdf.py 18:23:39 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 18:23:39 + omero config set omero.db.name OMERO-server 18:23:40 + omero config set omero.db.host pg 18:23:41 + omero config set omero.db.user postgres 18:23:43 + omero config set omero.data.dir /home/omero/omero-server-data 18:23:44 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 18:23:45 + omero config set omero.db.poolsize 25 18:23:47 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 18:23:48 + omero config set omero.security.trustStorePassword changeit 18:23:49 + omero config set omero.mail.config true 18:23:51 + omero config set omero.mail.from qa@openmicroscopy.org.uk 18:23:52 + omero config set omero.mail.host smtp.dundee.ac.uk 18:23:53 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 18:23:55 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' 18:23:56 + omero certificates 18:23:57 OpenSSL 3.0.7 1 Nov 2022 (Library: OpenSSL 3.0.7 1 Nov 2022) 18:23:57 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 18:23:58 + '[' false = true ']' 18:23:58 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 18:23:58 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 18:23:58 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG dbcommand => upgrade 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG dbhost => localhost 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG dbname => OMERO-server 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG dbpass => omero 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG dbuser => omero 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG rootpass => omero 18:23:58 2024-09-25 18:23:58,372 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 18:23:58 2024-09-25 18:23:58,372 [omego.extern] INFO Executing : omero version 18:23:59 OMERO.py version: 18:23:59 OMERO.server version: 18:23:59 5.6.3-510-e314753ae8-ice36 18:23:59 5.19.6.dev0 18:23:59 2024-09-25 18:23:59,832 [omego.extern] INFO Completed [1.459 s] 18:23:59 2024-09-25 18:23:59,832 [omego.extern] DEBUG Using omero CLI from omero 18:23:59 2024-09-25 18:23:59,832 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 18:23:59 2024-09-25 18:23:59,832 [omego.extern] INFO Running [current environment]: omero config get --show-password 18:23:59 2024-09-25 18:23:59,832 [omego.extern] INFO Executing : omero config get --show-password 18:24:01 2024-09-25 18:24:01,136 [omego.extern] INFO Completed [1.303 s] 18:24:01 2024-09-25 18:24:01,136 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 18:24:01 2024-09-25 18:24:01,136 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 18:24:01 2024-09-25 18:24:01,142 [omego.extern] INFO Completed [0.006 s] 18:24:01 2024-09-25 18:24:01,143 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.4\n' 18:24:01 2024-09-25 18:24:01,143 [ omego.db] INFO psql version: psql (PostgreSQL) 16.4 18:24:01 18:24:01 2024-09-25 18:24:01,143 [omego.extern] INFO Running [current environment]: omero config get --show-password 18:24:01 2024-09-25 18:24:01,143 [omego.extern] INFO Executing : omero config get --show-password 18:24:02 2024-09-25 18:24:02,531 [omego.extern] INFO Completed [1.388 s] 18:24:02 2024-09-25 18:24:02,531 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 18:24:02 2024-09-25 18:24:02,531 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 18:24:02 2024-09-25 18:24:02,568 [omego.extern] INFO Completed [0.037 s] 18:24:02 2024-09-25 18:24:02,568 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.8") at port "5432".\n' 18:24:02 2024-09-25 18:24:02,568 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 18:24:02 2024-09-25 18:24:02,568 [omego.extern] INFO Running [current environment]: omero config get --show-password 18:24:02 2024-09-25 18:24:02,568 [omego.extern] INFO Executing : omero config get --show-password 18:24:03 2024-09-25 18:24:03,916 [omego.extern] INFO Completed [1.347 s] 18:24:03 2024-09-25 18:24:03,916 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 18:24:03 2024-09-25 18:24:03,916 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 18:24:05 2024-09-25 18:24:05,209 [omego.extern] INFO Completed [1.293 s] 18:24:05 2024-09-25 18:24:05,210 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 18:24:05 2024-09-25 18:24:05,210 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 18:24:05 2024-09-25 18:24:05,212 [ omego.db] INFO Database is already at OMERO5.4__0 18:24:05 + export LANG=en_US.UTF-8 18:24:05 + LANG=en_US.UTF-8 18:24:05 + export LANGUAGE=en_US:en 18:24:05 + LANGUAGE=en_US:en 18:24:05 + export LC_ALL=en_US.UTF-8 18:24:05 + LC_ALL=en_US.UTF-8 18:24:05 + BUILD_ID=DONT_KILL_ME 18:24:05 + omero admin start 18:24:15 WARNING: lock files in /home/omero/omero-server-data 18:24:15 ---------------------------------------- 18:24:15 /home/omero/omero-server-data/.omero/repository/7097ab62-1c9f-4ba2-a5e5-d5b1f868081e/.lock 18:24:15 ---------------------------------------- 18:24:15 18:24:15 You may want to stop all server processes and remove 18:24:15 these files manually. Lock files can remain after an 18:24:15 abrupt server outage and are especially frequent on 18:24:15 remotely mounted filesystems like NFS. 18:24:15 18:24:15 No descriptor given. Using etc/grid/default.xml 18:24:25 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 18:24:25 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 18:24:25 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 18:24:25 Waiting on startup. Use CTRL-C to exit 18:24:25 + omero admin waitup 18:24:26 Waiting on startup. Use CTRL-C to exit 18:24:26 + omero admin diagnostics 18:24:28 18:24:28 ================================================================================ 18:24:28 OMERO Diagnostics (admin) 18:24:28 ================================================================================ 18:24:28 18:24:28 Commands: java -version 11.0.24 (/usr/bin/java) 18:24:28 Commands: python -V 3.9.18 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 18:24:28 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 18:24:28 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 18:24:28 Commands: psql --version 16.4 (/usr/bin/psql) 18:24:28 Commands: openssl version 3.0.71 (/usr/bin/openssl) 18:24:28 18:24:28 Component: OMERO.py 5.19.6.dev0 18:24:28 Component: OMERO.server 5.6.3-510-e314753ae8-ice36 18:24:28 18:24:28 Server: icegridnode running 18:24:28 Server: Blitz-0 active (pid = 2558, enabled) 18:24:28 Server: Indexer-0 activating (enabled) 18:24:28 Server: OMERO.Glacier2 active (pid = 2586, enabled) 18:24:28 Server: OMERO.IceStorm active (pid = 2616, enabled) 18:24:28 Server: Processor-0 activating (enabled) 18:24:28 Server: Tables-0 activating (enabled) 18:24:28 18:24:28 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 18:24:28 Log files: Blitz-0.log 22.2 KB errors=0 warnings=1 18:24:28 Log files: DropBox.log n/a 18:24:28 Log files: FileServer.log n/a 18:24:28 Log files: Indexer-0.log 358 B 18:24:28 Log files: MonitorServer.log n/a 18:24:28 Log files: Processor-0.log 471 B 18:24:28 Log files: Tables-0.log 720 B 18:24:28 Log files: TestDropBox.log n/a 18:24:28 Log files: master.err 180 B 18:24:28 Log files: master.out 30.1 KB 18:24:28 Log files: Total size 0.05 MB 18:24:28 18:24:28 18:24:28 Environment:OMERO_HOME=(unset) 18:24:28 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 18:24:28 Environment:OMERO_NODE=(unset) 18:24:28 Environment:OMERO_MASTER=(unset) 18:24:28 Environment:OMERO_USERDIR=(unset) 18:24:28 Environment:OMERO_TMPDIR=(unset) 18:24:28 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:24:28 Environment:PYTHONPATH=(unset) 18:24:28 Environment:ICE_HOME=/opt/ice-3.6.5 18:24:28 Environment:LD_LIBRARY_PATH=(unset) 18:24:28 Environment:DYLD_LIBRARY_PATH=(unset) 18:24:28 18:24:28 OMERO SSL port:4064 18:24:28 OMERO TCP port:4063 18:24:28 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 18:24:28 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 18:24:28 18:24:28 JVM settings: Blitz-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 18:24:28 JVM settings: Indexer-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 18:24:28 JVM settings: PixelData-${index} -Xmx7200m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 18:24:28 JVM settings: Repository-${index} -Xmx4800m -XX:MaxPermSize=1g -XX:+IgnoreUnrecognizedVMOptions 18:24:28 18:24:28 Jar: lib/server/formats-api.jar Bio-Formats API 8.0.0-SNAPSHOT 25 September 2024 6d250b778318c46ab49f7a74b46ab4a14156d5d6 18:24:28 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.0.0-SNAPSHOT 25 September 2024 6d250b778318c46ab49f7a74b46ab4a14156d5d6 18:24:28 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.0.0-SNAPSHOT 25 September 2024 6d250b778318c46ab49f7a74b46ab4a14156d5d6 18:24:28 Jar: lib/server/ome-codecs.jar OME Codecs 1.0.4-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/ome-common.jar OME Common Java 6.0.24-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/ome-jai.jar OME JAI 0.1.5-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/ome-poi.jar OME POI 5.3.10-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/ome-xml.jar OME XML library 6.3.7-SNAPSHOT 25 September 2024 8f91651ae3db162890bfcfa829813dfe52802d32 18:24:28 Jar: lib/server/omero-blitz.jar jar 5.7.5-SNAPSHOT 18:24:28 Jar: lib/server/omero-common.jar jar 5.6.8-SNAPSHOT 18:24:28 Jar: lib/server/omero-gateway.jar jar 5.9.4-SNAPSHOT 18:24:28 Jar: lib/server/omero-model.jar jar 5.6.16-SNAPSHOT 18:24:28 Jar: lib/server/omero-renderer.jar jar 5.5.18-SNAPSHOT 18:24:28 Jar: lib/server/omero-romio.jar jar 5.7.8-SNAPSHOT 18:24:28 Jar: lib/server/omero-server.jar jar 5.6.13-SNAPSHOT 18:24:28 + deactivate 18:24:28 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 18:24:28 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 18:24:28 + export PATH 18:24:28 + unset _OLD_VIRTUAL_PATH 18:24:28 + '[' -n '' ']' 18:24:28 + '[' -n /bin/bash -o -n '' ']' 18:24:28 + hash -r 18:24:28 + '[' -n '' ']' 18:24:28 + unset VIRTUAL_ENV 18:24:28 + '[' '!' '' = nondestructive ']' 18:24:28 + unset -f deactivate 18:24:28 Finished: SUCCESS