Started by upstream project "BIOFORMATS-test-repo" build number 269
originally caused by:
 Started by upstream project "Trigger" build number 292
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins11548537916512028894.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_42581_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 05:14:45,111 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 05:14:45,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - No custom configurators were discovered as a service.
   [testng] 05:14:45,112 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:14:45,113 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 05:14:45,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 05:14:45,113 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 05:14:45,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 05:14:45,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:14:45,114 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 05:14:45,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 05:14:45,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 05:14:45,115 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 05:14:45,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 05:14:45,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 05:14:45,288 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 05:14:45,289 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 05:14:45,294 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 05:14:45,294 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 05:14:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 05:14:45,294 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 05:14:45,294 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2e3967ea - End of configuration.
   [testng] 05:14:45,295 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@2e6a8155 - Registering current configuration as safe fallback point
   [testng] 05:14:45,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@55b53d44 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 181 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-11-27 05:14:45,303] [main] java.version = 17.0.2
   [testng] 05:14:45,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 05:14:45,306 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:14:45,345 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-11-27_05-14-45.log]
   [testng] 05:14:45,346 |-INFO in ch.qos.logback.core.sift.SiftProcessor@798162bc - End of configuration.
   [testng] [2024-11-27 05:14:45,348] [main] testng.directory = /data
   [testng] [2024-11-27 05:14:45,348] [main] testng.configDirectory = /config
   [testng] [2024-11-27 05:14:45,357] [main] testng.multiplier = 1.0
   [testng] [2024-11-27 05:14:45,357] [main] testng.in-memory = false
   [testng] [2024-11-27 05:14:45,357] [main] testng.allow-missing = false
   [testng] [2024-11-27 05:14:45,358] [main] user.language = en
   [testng] [2024-11-27 05:14:45,358] [main] user.country = ${user.country}
   [testng] [2024-11-27 05:14:45,358] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-11-27 05:15:03,917] [main] ----------------------------------------
   [testng] [2024-11-27 05:15:03,917] [main] Total files: 23
   [testng] [2024-11-27 05:15:03,917] [main] Scan time: 18.559 s (806 ms/file)
   [testng] [2024-11-27 05:15:03,917] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-11-27 05:15:54,879] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr: 
   [testng] 05:15:54,879 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 05:15:54,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:15:54,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-11-27_05-15-54.log]
   [testng] 05:15:54,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@503efc25 - End of configuration.
   [testng] [2024-11-27 05:15:56,090] [pool-1-thread-12] Initializing /data/public/NIH/zstat1.nii: 
   [testng] 05:15:56,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 05:15:56,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:15:56,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-11-27_05-15-56.log]
   [testng] 05:15:56,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db6cb18 - End of configuration.
   [testng] [2024-11-27 05:15:57,246] [pool-1-thread-11] Initializing /data/public/NIH/avg152T1_LR_nifti.nii: 
   [testng] 05:15:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 05:15:57,247 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:15:57,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-11-27_05-15-57.log]
   [testng] 05:15:57,248 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c4fdb7 - End of configuration.
   [testng] [2024-11-27 05:15:58,387] [pool-1-thread-10] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr: 
   [testng] 05:15:58,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 05:15:58,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:15:58,387 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-11-27_05-15-58.log]
   [testng] 05:15:58,388 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ca2bb95 - End of configuration.
   [testng] [2024-11-27 05:15:59,594] [pool-1-thread-9] Initializing /data/public/NIH/zstat1.nii.gz: 
   [testng] 05:15:59,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 05:15:59,594 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:15:59,595 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-11-27_05-15-59.log]
   [testng] 05:15:59,595 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46ae5b65 - End of configuration.
   [testng] [2024-11-27 05:16:04,568] [pool-1-thread-8] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz: 
   [testng] 05:16:04,568 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 05:16:04,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:04,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-11-27_05-16-04.log]
   [testng] 05:16:04,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56a5a589 - End of configuration.
   [testng] [2024-11-27 05:16:09,623] [pool-1-thread-7] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr: 
   [testng] 05:16:09,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 05:16:09,623 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:09,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-11-27_05-16-09.log]
   [testng] 05:16:09,624 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b4efa30 - End of configuration.
   [testng] [2024-11-27 05:16:10,850] [pool-1-thread-6] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr: 
   [testng] 05:16:10,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 05:16:10,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:10,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-11-27_05-16-10.log]
   [testng] 05:16:10,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a67480f - End of configuration.
   [testng] [2024-11-27 05:16:12,098] [pool-1-thread-5] Initializing /data/public/NIH/filtered_func_data.nii: 
   [testng] 05:16:12,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 05:16:12,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:12,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-11-27_05-16-12.log]
   [testng] 05:16:12,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c8f6f59 - End of configuration.
   [testng] [2024-11-27 05:16:13,283] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii: 
   [testng] 05:16:13,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 05:16:13,283 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:13,283 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-11-27_05-16-13.log]
   [testng] 05:16:13,284 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36451b94 - End of configuration.
   [testng] [2024-11-27 05:16:14,458] [pool-1-thread-3] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr: 
   [testng] 05:16:14,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 05:16:14,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:14,459 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-11-27_05-16-14.log]
   [testng] 05:16:14,459 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52cbcc5b - End of configuration.
   [testng] [2024-11-27 05:16:15,719] [pool-1-thread-2] Initializing /data/public/NIH/newsirp_final_XML.nii: 
   [testng] 05:16:15,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 05:16:15,719 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 05:16:15,720 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-11-27_05-16-15.log]
   [testng] 05:16:15,720 |-INFO in ch.qos.logback.core.sift.SiftProcessor@56b43735 - End of configuration.
   [testng] [2024-11-27 05:16:26,202] [pool-1-thread-12] Initializing /data/public/NIH/filtered_func_data.nii.gz: 
   [testng] [2024-11-27 05:16:33,542] [pool-1-thread-4] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz: 
   [testng] [2024-11-27 05:16:38,479] [pool-1-thread-11] Initializing /data/public/NIH/minimal.nii: 
   [testng] [2024-11-27 05:16:39,574] [pool-1-thread-5] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr: 
   [testng] [2024-11-27 05:16:40,767] [pool-1-thread-2] Initializing /data/qa-17334/volume4d.nii: 
   [testng] [2024-11-27 05:16:45,378] [pool-1-thread-10] Initializing /data/public/NIH/minimal.hdr: 
   [testng] [2024-11-27 05:16:46,660] [pool-1-thread-1] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr: 
   [testng] [2024-11-27 05:16:47,933] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 2 minutes 57 seconds
Finished: SUCCESS