12:18:12 Started by upstream project "Trigger" build number 5 12:18:12 originally caused by: 12:18:12 Started by user devspace 12:18:12 Running as SYSTEM 12:18:12 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 12:18:12 The recommended git tool is: NONE 12:18:12 No credentials specified 12:18:12 Cloning the remote Git repository 12:18:12 Cloning repository https://github.com/snoopycrimecop/openmicroscopy.git 12:18:12 > git init /home/omero/workspace/OMERO-build/src # timeout=10 12:18:12 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 12:18:12 > git --version # timeout=10 12:18:12 > git --version # 'git version 2.52.0' 12:18:12 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 12:21:27 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 12:21:27 > git config --add remote.origin.fetch +refs/heads/*:refs/remotes/origin/* # timeout=10 12:21:27 Avoid second fetch 12:21:27 > git rev-parse origin/merge_ci^{commit} # timeout=10 12:21:27 Checking out Revision cc67600ce04c4dc557e74556cb7395eac177132a (origin/merge_ci) 12:21:27 > git config core.sparsecheckout # timeout=10 12:21:27 > git checkout -f cc67600ce04c4dc557e74556cb7395eac177132a # timeout=10 12:21:38 Commit message: "Add version.properties to etc/omero.properties" 12:21:38 First time build. Skipping changelog. 12:21:38 Cleaning workspace 12:21:38 > git rev-parse --verify HEAD # timeout=10 12:21:38 Resetting working tree 12:21:38 > git reset --hard # timeout=10 12:21:38 > git clean -fdx # timeout=10 12:21:39 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 1 12:21:39 [OMERO-build] $ /bin/bash -xe /tmp/jenkins3892844553441812900.sh 12:21:39 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 12:21:39 + cd src 12:21:39 + export OMERO_BRANCH=merge_ci 12:21:39 + OMERO_BRANCH=merge_ci 12:21:39 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 12:21:39 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 12:21:39 + source /home/omero/settings.env 12:21:39 ++ OMERO_DB_HOST=pg 12:21:39 ++ OMERO_DB_USER=postgres 12:21:39 ++ OMERO_DB_PASS= 12:21:39 ++ OMERO_ROOT_PASS=omero 12:21:39 ++ OMERO_DATA_DIR=/OMERO 12:21:39 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 12:21:39 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 12:21:59 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 12:22:00 Collecting zeroc-ice==3.6.5 12:22:01 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 12:22:03 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 16.2 MB/s eta 0:00:00 12:22:03 Installing collected packages: zeroc-ice 12:22:06 Successfully installed zeroc-ice-3.6.5 12:22:07 12:22:07 [notice] A new release of pip available: 22.3.1 -> 26.1.2 12:22:07 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:22:07 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 12:22:08 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 12:22:08 Collecting setuptools<66 12:22:08 Downloading setuptools-65.7.0-py3-none-any.whl (1.2 MB) 12:22:08 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 9.7 MB/s eta 0:00:00 12:22:08 Collecting omero-py 12:22:08 Downloading omero_py-5.22.1-py3-none-any.whl (2.8 MB) 12:22:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.8/2.8 MB 17.8 MB/s eta 0:00:00 12:22:09 Collecting appdirs 12:22:09 Downloading appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 12:22:09 Collecting future 12:22:09 Downloading future-1.0.0-py3-none-any.whl (491 kB) 12:22:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 491.3/491.3 kB 8.5 MB/s eta 0:00:00 12:22:09 Collecting numpy<3,>=2 12:22:09 Downloading numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 12:22:10 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.9/16.9 MB 17.5 MB/s eta 0:00:00 12:22:11 Collecting Pillow>=10.0.0 12:22:11 Downloading pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 12:22:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.9/6.9 MB 19.8 MB/s eta 0:00:00 12:22:11 Collecting PyYAML 12:22:11 Downloading pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 12:22:12 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 806.6/806.6 kB 12.2 MB/s eta 0:00:00 12:22:12 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 12:22:12 Collecting requests 12:22:12 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 12:22:12 Collecting portalocker 12:22:12 Downloading portalocker-3.2.0-py3-none-any.whl (22 kB) 12:22:12 Collecting charset_normalizer<4,>=2 12:22:12 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB) 12:22:12 Collecting idna<4,>=2.5 12:22:12 Using cached idna-3.18-py3-none-any.whl (65 kB) 12:22:13 Collecting urllib3<3,>=1.26 12:22:13 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 12:22:13 Collecting certifi>=2023.5.7 12:22:13 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 12:22:13 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 12:22:14 Attempting uninstall: setuptools 12:22:14 Found existing installation: setuptools 65.5.1 12:22:15 Uninstalling setuptools-65.5.1: 12:22:15 Successfully uninstalled setuptools-65.5.1 12:23:07 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.7 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 12:23:07 12:23:07 [notice] A new release of pip available: 22.3.1 -> 26.1.2 12:23:07 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:23:07 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 12:23:07 ++ deactivate nondestructive 12:23:07 ++ '[' -n '' ']' 12:23:07 ++ '[' -n '' ']' 12:23:07 ++ hash -r 12:23:07 ++ '[' -n '' ']' 12:23:07 ++ unset VIRTUAL_ENV 12:23:07 ++ unset VIRTUAL_ENV_PROMPT 12:23:07 ++ '[' '!' nondestructive = nondestructive ']' 12:23:07 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 12:23:07 ++ export VIRTUAL_ENV 12:23:07 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:23:07 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:23:07 ++ export PATH 12:23:07 ++ '[' -n '' ']' 12:23:07 ++ '[' -z '' ']' 12:23:07 ++ _OLD_VIRTUAL_PS1= 12:23:07 ++ PS1='(omero-virtualenv) ' 12:23:07 ++ export PS1 12:23:07 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 12:23:07 ++ export VIRTUAL_ENV_PROMPT 12:23:07 ++ hash -r 12:23:07 + source docs/hudson/OMERO.sh 12:23:07 ++ set -e 12:23:07 ++ set -u 12:23:07 ++ set -x 12:23:07 ++ source docs/hudson/functions.sh 12:23:07 ++ echo Building merge_ci 12:23:07 Building merge_ci 12:23:07 ++ python3 ./build.py build-dev release-all 12:23:07 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:23:09 12:23:09 check-ivy: 12:23:09 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 12:23:09 Created dir: /home/omero/workspace/OMERO-build/src/target 12:23:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:23:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:23:10 12:23:10 build-scons: 12:23:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:23:12 No sub-builds to iterate on 12:23:12 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:23:12 12:23:12 buildlist: 12:23:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:23:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:23:13 12:23:13 clean: 12:23:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:23:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:23:13 12:23:13 python-clean: 12:23:13 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:23:13 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:23:13 warnings.warn( 12:23:13 running clean 12:23:14 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 12:23:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:23:14 12:23:14 python-clean: 12:23:14 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:23:14 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:23:14 warnings.warn( 12:23:14 running clean 12:23:14 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 12:23:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:23:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:23:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:23:16 12:23:16 python-clean: 12:23:16 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:23:16 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-cc67600ce0-ice36-b1') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:23:16 warnings.warn( 12:23:16 running clean 12:23:16 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 12:23:16 Deleting directory /home/omero/workspace/OMERO-build/src/target 12:23:17 12:23:17 build-scons: 12:23:17 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:23:18 12:23:18 build: 12:23:18 No sub-builds to iterate on 12:23:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:23:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:23:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:23:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:23:19 12:23:19 tools-init: 12:23:19 no-op 12:23:20 12:23:20 retrieve: 12:23:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:23:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:28:18 12:28:18 prepare: 12:28:18 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:28:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:28:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:28:18 12:28:18 pre-compile: 12:28:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:28:20 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:28:28 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:28:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:28:33 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:28:36 12:28:36 compile: 12:28:36 no-op 12:28:36 12:28:36 package: 12:28:36 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 12:28:40 12:28:40 install: 12:28:40 :: delivering :: omero#omero_client;working@03fd9c56c5e9 :: 5.6.3-622-cc67600ce0-ice36-b1 :: integration :: Tue Jul 07 12:23:19 UTC 2026 12:28:40 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 12:28:40 :: publishing :: omero#omero_client 12:28:40 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-cc67600ce0-ice36-b1/omero_client-5.6.3-622-cc67600ce0-ice36-b1.jar 12:28:40 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-cc67600ce0-ice36-b1/omero_client-5.6.3-622-cc67600ce0-ice36-b1.xml 12:28:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:28:41 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:28:41 12:28:41 retrieve: 12:28:41 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:28:41 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:28:42 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:28:42 12:28:42 dist: 12:28:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 12:28:42 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 12:28:42 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:28:42 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:28:42 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 12:28:43 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 12:28:43 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 12:28:44 Entering /home/omero/workspace/OMERO-build/src/components/tests... 12:28:44 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:28:45 12:28:45 copy-licenses: 12:28:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:28:45 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 12:28:45 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 12:28:45 12:28:45 copy-history: 12:28:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:28:45 12:28:45 copy-etc: 12:28:45 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 12:28:45 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 12:28:46 12:28:46 copy-sql: 12:28:46 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 12:29:40 12:29:40 copy-server: 12:29:40 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 12:29:45 12:29:45 copy-client: 12:29:45 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 12:29:50 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 12:29:54 12:29:54 update-version: 12:29:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 12:29:54 12:29:54 create-workdirs: 12:29:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 12:29:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 12:29:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 12:29:54 12:29:54 copy-luts: 12:29:54 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:29:54 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:29:54 12:29:54 test-compile: 12:29:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:29:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:29:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:29:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:29:55 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:29:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:29:56 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:29:56 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:29:57 12:29:57 testng-init: 12:29:57 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:29:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:21 12:30:21,315 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 12:30:21 12:30:21,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - No custom configurators were discovered as a service. 12:30:21 12:30:21,318 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 12:30:21 12:30:21,322 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 12:30:21 12:30:21,325 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 12:30:21 12:30:21,326 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 12:30:21 12:30:21,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 12:30:21 12:30:21,327 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 12:30:21 12:30:21,329 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 12:30:21 12:30:21,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 12:30:21 12:30:21,333 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:30:21 12:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs multiple times on the classpath. 12:30:21 12:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:30:21 12:30:21,335 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@47786165 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 12:30:21 12:30:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 12:30:21 12:30:21,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 12:30:21 12:30:21,593 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 12:30:21 12:30:21,595 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 12:30:21 12:30:21,595 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - Please move "immediateFlush" property into the enclosing appender. 12:30:21 12:30:21,669 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@7aa8801d - Setting the "immediateFlush" property of the enclosing appender to true 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 12:30:21 12:30:21,670 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 12:30:21 12:30:21,671 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@53cd2763 - End of configuration. 12:30:21 12:30:21,674 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@46fbb0a3 - Registering current configuration as safe fallback point 12:30:21 12:30:21,674 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d931617 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 345 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 12:30:21 12:30:21 lifecycle.test-compile: 12:30:21 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:30:21 Compiling 86 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:30:22 warning: [options] bootstrap class path not set in conjunction with -source 8 12:30:22 warning: [options] source value 8 is obsolete and will be removed in a future release 12:30:22 warning: [options] target value 8 is obsolete and will be removed in a future release 12:30:22 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 12:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:24 import omero.grid.RawAccessRequest; 12:30:24 ^ 12:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:24 import omero.grid.RawAccessRequest; 12:30:24 ^ 12:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:24 import omero.grid.RawAccessRequest; 12:30:24 ^ 12:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:24 import omero.model.ImportJob; 12:30:24 ^ 12:30:24 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:30:24 import omero.model.ImportJobI; 12:30:24 ^ 12:30:25 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1207: warning: [deprecation] newInstance() in Class has been deprecated 12:30:25 IObject link = (IObject) linkClass.newInstance(); 12:30:25 ^ 12:30:25 where T is a type-variable: 12:30:25 T extends Object declared in class Class 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 12:30:26 T copy = (T) obj.getClass().newInstance(); 12:30:26 ^ 12:30:26 where T is a type-variable: 12:30:26 T extends Object declared in class Class 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:26 RawAccessRequest raw = new RawAccessRequest(); 12:30:26 ^ 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:26 RawAccessRequest raw = new RawAccessRequest(); 12:30:26 ^ 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:30:26 raw.repoUuid = legacy.root().getHash().getValue(); 12:30:26 ^ 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 12:30:26 raw.command = "rm"; 12:30:26 ^ 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 12:30:26 raw.args = Arrays.asList(path); 12:30:26 ^ 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 12:30:26 final IObject link = linkClass.newInstance(); 12:30:26 ^ 12:30:26 where T is a type-variable: 12:30:26 T extends Object declared in class Class 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 12:30:26 originalLink.setChild(annotationClass.newInstance()); 12:30:26 ^ 12:30:26 where T is a type-variable: 12:30:26 T extends Object declared in class Class 12:30:26 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:30:26 RoiResult r = svc.findByImage(id, new RoiOptions()); 12:30:26 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:27 final RawAccessRequest request = new RawAccessRequest(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:27 final RawAccessRequest request = new RawAccessRequest(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:30:27 request.repoUuid = repo.root().getHash().getValue(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 12:30:27 request.command = "exists"; 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 12:30:27 request.args = Collections.singletonList(dirPath); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:27 final RawAccessRequest request = new RawAccessRequest(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:30:27 final RawAccessRequest request = new RawAccessRequest(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:30:27 request.repoUuid = repo.root().getHash().getValue(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 12:30:27 request.command = "exists"; 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 12:30:27 request.args = Collections.singletonList(dirName); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactoryTest.java:60: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 RoiResult result = roiSvc.findByImage(imageId, new RoiOptions()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:27 final ImportJob importJob = new ImportJobI(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:30:27 final ImportJob importJob = new ImportJobI(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 12:30:27 importJob.setImageName(omero.rtypes.rstring(name)); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 12:30:27 importJob.setImageDescription(omero.rtypes.rstring(desc)); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:27 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:30:27 final String savedName = sent.getImageName().getValue().toString(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:30:27 final String savedDesc = sent.getImageDescription().getValue().toString(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:30:27 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:30:27 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:30:27 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 RoiResult r = svc.findByImage(image.getId().getValue(), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 12:30:27 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 12:30:27 table = svc.getTable(f.getId().getValue()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 RoiResult r = svc.findByImage(image.getId().getValue(), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:30:27 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:30:27 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:30:27 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:30:27 svc.getShapeStatsRestricted( 12:30:27 ^ 12:30:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:30:27 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 12:30:27 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:30:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:30:28 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:30:28 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:30:28 request.typesToIgnore = Collections.singletonList("Annotation"); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:30:28 request.typesToIgnore = Collections.singletonList("Annotation"); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:30:28 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:30:28 p2.setRelatedTo(p1); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:30:28 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:30:28 pixels1.setRelatedTo(pixels2); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:30:28 Pixels pixels = pixels1.getRelatedTo(); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:30:28 Assert.assertNull(pixels1.getRelatedTo()); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:30:28 pixels1.setRelatedTo(pixels2); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:30:28 Pixels pixels = pixels1.getRelatedTo(); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:30:28 Assert.assertNull(pixels1.getRelatedTo()); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:28 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:28 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:30:28 ^ 12:30:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:30:28 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:30:28 ^ 12:30:28 Note: Some input files use unchecked or unsafe operations. 12:30:28 Note: Recompile with -Xlint:unchecked for details. 12:30:28 92 warnings 12:30:29 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1316235112.tmp 12:30:29 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 12:30:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:29 :: delivering :: omero#OmeroJava-test;working@03fd9c56c5e9 :: 5.6.3-622-cc67600ce0-ice36-b1 :: integration :: Tue Jul 07 12:29:56 UTC 2026 12:30:29 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 12:30:29 :: publishing :: omero#OmeroJava-test 12:30:29 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-cc67600ce0-ice36-b1.jar 12:30:29 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-cc67600ce0-ice36-b1.xml 12:30:29 12:30:29 build-eclipse: 12:30:29 No sub-builds to iterate on 12:30:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:30:30 12:30:30 retrieve: 12:30:30 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:30:30 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:30:34 12:30:34 prepare: 12:30:34 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:30:39 12:30:39 release-clients: 12:30:39 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-cc67600ce0-ice36-b1.zip 12:30:44 12:30:44 release-zip: 12:30:44 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-cc67600ce0-ice36-b1.zip 12:30:56 12:30:56 BUILD SUCCESSFUL 12:30:56 Total time: 7 minutes 48 seconds 12:30:56 ++ '[' -d .git ']' 12:30:56 ++ python3 ./build.py release-src 12:30:57 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:30:58 12:30:58 release-src-git: 12:30:58 Releasing openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1 12:30:59 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1.zip 12:30:59 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-cc67600ce0-ice36-b1-base.zip 12:31:01 12:31:01 BUILD SUCCESSFUL 12:31:01 Total time: 4 seconds 12:31:01 ++ echo BUILD_NUMBER=1 12:31:01 ++ echo OMERO_BRANCH=merge_ci 12:31:01 ++ git_info 12:31:01 +++ git rev-parse HEAD 12:31:01 ++ HEAD=cc67600ce04c4dc557e74556cb7395eac177132a 12:31:01 ++ git log --max-count=1 cc67600ce04c4dc557e74556cb7395eac177132a 12:31:01 ++ env 12:31:01 ++ sort 12:31:01 Archiving artifacts 12:31:18 Finished: SUCCESS