11:41:09 Started by upstream project "Trigger" build number 18 11:41:09 originally caused by: 11:41:09 Started by user devspace 11:41:09 Running as SYSTEM 11:41:09 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 11:41:09 The recommended git tool is: NONE 11:41:09 No credentials specified 11:41:09 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 11:41:09 Fetching changes from the remote Git repository 11:41:09 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 11:41:09 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 11:41:09 > git --version # timeout=10 11:41:09 > git --version # 'git version 2.52.0' 11:41:09 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 11:41:13 > git rev-parse origin/merge_ci^{commit} # timeout=10 11:41:13 Checking out Revision 8a224c870a775c3f5ae19126f391365102cf6cd2 (origin/merge_ci) 11:41:13 > git config core.sparsecheckout # timeout=10 11:41:13 > git checkout -f 8a224c870a775c3f5ae19126f391365102cf6cd2 # timeout=10 11:41:29 Commit message: "Add version.properties to etc/omero.properties" 11:41:29 > git rev-list --no-walk 953535fe6bad3e5533369a4a7d3db2395a0d8bee # timeout=10 11:41:29 Cleaning workspace 11:41:29 > git rev-parse --verify HEAD # timeout=10 11:41:29 Resetting working tree 11:41:29 > git reset --hard # timeout=10 11:41:29 > git clean -fdx # timeout=10 11:41:57 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 10 11:41:58 [OMERO-build] $ /bin/bash -xe /tmp/jenkins2212035430806473872.sh 11:41:58 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 11:41:58 + cd src 11:41:58 + export OMERO_BRANCH=merge_ci 11:41:58 + OMERO_BRANCH=merge_ci 11:41:58 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 11:41:58 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 11:42:21 + source /home/omero/settings.env 11:42:21 ++ OMERO_DB_HOST=pg 11:42:21 ++ OMERO_DB_USER=postgres 11:42:21 ++ OMERO_DB_PASS= 11:42:21 ++ OMERO_ROOT_PASS=omero 11:42:21 ++ OMERO_DATA_DIR=/OMERO 11:42:21 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 11:42:21 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 11:42:43 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 11:42:44 Collecting zeroc-ice==3.6.5 11:42:44 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 11:42:47 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.9 MB/s eta 0:00:00 11:42:47 Installing collected packages: zeroc-ice 11:42:51 Successfully installed zeroc-ice-3.6.5 11:42:51 11:42:51 [notice] A new release of pip available: 22.3.1 -> 26.1.2 11:42:51 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:42:51 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 11:42:52 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 11:42:53 Collecting setuptools<66 11:42:53 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 11:42:53 Collecting omero-py 11:42:53 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 11:42:53 Collecting appdirs 11:42:53 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 11:42:53 Collecting future 11:42:53 Using cached future-1.0.0-py3-none-any.whl (491 kB) 11:42:54 Collecting numpy<3,>=2 11:42:54 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 11:42:55 Collecting Pillow>=10.0.0 11:42:55 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 11:42:55 Collecting PyYAML 11:42:55 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 11:42:55 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 11:42:55 Collecting requests 11:42:55 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 11:42:55 Collecting portalocker 11:42:55 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 11:42:56 Collecting charset_normalizer<4,>=2 11:42:56 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 11:42:56 Collecting idna<4,>=2.5 11:42:56 Using cached idna-3.18-py3-none-any.whl (65 kB) 11:42:56 Collecting urllib3<3,>=1.26 11:42:56 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 11:42:56 Collecting certifi>=2023.5.7 11:42:56 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 11:42:57 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 11:42:58 Attempting uninstall: setuptools 11:42:58 Found existing installation: setuptools 65.5.1 11:42:58 Uninstalling setuptools-65.5.1: 11:42:59 Successfully uninstalled setuptools-65.5.1 11:43:58 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 11:43:59 11:43:59 [notice] A new release of pip available: 22.3.1 -> 26.1.2 11:43:59 [notice] To update, run: python3.11 -m pip install --upgrade pip 11:43:59 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 11:43:59 ++ deactivate nondestructive 11:43:59 ++ '[' -n '' ']' 11:43:59 ++ '[' -n '' ']' 11:43:59 ++ hash -r 11:43:59 ++ '[' -n '' ']' 11:43:59 ++ unset VIRTUAL_ENV 11:43:59 ++ unset VIRTUAL_ENV_PROMPT 11:43:59 ++ '[' '!' nondestructive = nondestructive ']' 11:43:59 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 11:43:59 ++ export VIRTUAL_ENV 11:43:59 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:43:59 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 11:43:59 ++ export PATH 11:43:59 ++ '[' -n '' ']' 11:43:59 ++ '[' -z '' ']' 11:43:59 ++ _OLD_VIRTUAL_PS1= 11:43:59 ++ PS1='(omero-virtualenv) ' 11:43:59 ++ export PS1 11:43:59 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 11:43:59 ++ export VIRTUAL_ENV_PROMPT 11:43:59 ++ hash -r 11:43:59 + source docs/hudson/OMERO.sh 11:43:59 ++ set -e 11:43:59 ++ set -u 11:43:59 ++ set -x 11:43:59 ++ source docs/hudson/functions.sh 11:43:59 ++ echo Building merge_ci 11:43:59 Building merge_ci 11:43:59 ++ python3 ./build.py build-dev release-all 11:43:59 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:44:00 11:44:00 check-ivy: 11:44:00 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 11:44:00 Created dir: /home/omero/workspace/OMERO-build/src/target 11:44:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:44:02 11:44:02 build-scons: 11:44:02 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:44:04 No sub-builds to iterate on 11:44:04 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:44:05 11:44:05 buildlist: 11:44:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:44:05 11:44:05 clean: 11:44:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:06 11:44:06 python-clean: 11:44:06 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:06 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-8a224c870a-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:06 warnings.warn( 11:44:06 running clean 11:44:06 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 11:44:06 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:44:07 11:44:07 python-clean: 11:44:07 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:07 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-8a224c870a-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:07 warnings.warn( 11:44:07 running clean 11:44:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 11:44:07 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:44:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:44:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:44:08 11:44:08 python-clean: 11:44:08 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 11:44:08 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-624-8a224c870a-ice36-b11') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 11:44:08 warnings.warn( 11:44:08 running clean 11:44:08 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 11:44:08 Deleting directory /home/omero/workspace/OMERO-build/src/target 11:44:10 11:44:10 build-scons: 11:44:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 11:44:12 11:44:12 build: 11:44:12 No sub-builds to iterate on 11:44:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:44:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:44:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:44:13 11:44:13 tools-init: 11:44:13 no-op 11:44:13 11:44:13 retrieve: 11:44:13 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:44:13 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:45:36 11:45:36 prepare: 11:45:36 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:45:36 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 11:45:36 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 11:45:36 11:45:36 pre-compile: 11:45:36 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:38 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:46 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:51 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:52 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 11:45:54 11:45:54 compile: 11:45:54 no-op 11:45:54 11:45:54 package: 11:45:54 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 11:45:59 11:45:59 install: 11:45:59 :: delivering :: omero#omero_client;working@477d91c674a5 :: 5.6.3-624-8a224c870a-ice36-b11 :: integration :: Thu Jul 16 11:44:13 UTC 2026 11:45:59 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 11:45:59 :: publishing :: omero#omero_client 11:45:59 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-8a224c870a-ice36-b11/omero_client-5.6.3-624-8a224c870a-ice36-b11.jar 11:45:59 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-624-8a224c870a-ice36-b11/omero_client-5.6.3-624-8a224c870a-ice36-b11.xml 11:46:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:00 11:46:00 retrieve: 11:46:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:01 Entering /home/omero/workspace/OMERO-build/src/components/tools... 11:46:01 11:46:01 dist: 11:46:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 11:46:01 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 11:46:01 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:46:01 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 11:46:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 11:46:02 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 11:46:02 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 11:46:03 Entering /home/omero/workspace/OMERO-build/src/components/tests... 11:46:03 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:46:04 11:46:04 copy-licenses: 11:46:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:46:04 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 11:46:04 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 11:46:04 11:46:04 copy-history: 11:46:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 11:46:04 11:46:04 copy-etc: 11:46:04 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 11:46:04 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 11:46:05 11:46:05 copy-sql: 11:46:05 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 11:46:17 11:46:17 copy-server: 11:46:17 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 11:46:24 11:46:24 copy-client: 11:46:24 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 11:46:28 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 11:46:33 11:46:33 update-version: 11:46:33 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 11:46:33 11:46:33 create-workdirs: 11:46:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 11:46:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 11:46:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 11:46:33 11:46:33 copy-luts: 11:46:33 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:46:33 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 11:46:34 11:46:34 test-compile: 11:46:34 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:34 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 11:46:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 11:46:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:35 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 11:46:36 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 11:46:36 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:36 11:46:36 testng-init: 11:46:36 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:36 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:45 11:46:45,332 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 11:46:45 11:46:45,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 11:46:45 11:46:45,335 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 11:46:45 11:46:45,339 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 11:46:45 11:46:45,342 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 11:46:45 11:46:45,345 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 11:46:45 11:46:45,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 8 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 11:46:45 11:46:45,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 11:46:45 11:46:45,348 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 11:46:45 11:46:45,352 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 11:46:45 11:46:45,353 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:46:45 11:46:45,355 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 11:46:45 11:46:45,355 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 11:46:45 11:46:45,355 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 11:46:45 11:46:45,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 11:46:45 11:46:45,593 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 11:46:45 11:46:45,616 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 11:46:45 11:46:45,618 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 11:46:45 11:46:45,618 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 11:46:45 11:46:45,692 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 11:46:45 11:46:45,693 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 11:46:45 11:46:45,695 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 11:46:45 11:46:45,697 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 11:46:45 11:46:45,697 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 349 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 11:46:45 11:46:45 lifecycle.test-compile: 11:46:45 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:46:45 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 11:46:46 warning: [options] bootstrap class path not set in conjunction with -source 8 11:46:46 warning: [options] source value 8 is obsolete and will be removed in a future release 11:46:46 warning: [options] target value 8 is obsolete and will be removed in a future release 11:46:46 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 11:46:47 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:47 import omero.grid.RawAccessRequest; 11:46:47 ^ 11:46:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:48 import omero.grid.RawAccessRequest; 11:46:48 ^ 11:46:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:48 import omero.grid.RawAccessRequest; 11:46:48 ^ 11:46:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:48 import omero.model.ImportJob; 11:46:48 ^ 11:46:48 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:46:48 import omero.model.ImportJobI; 11:46:48 ^ 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 11:46:49 IObject link = (IObject) linkClass.newInstance(); 11:46:49 ^ 11:46:49 where T is a type-variable: 11:46:49 T extends Object declared in class Class 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 11:46:49 T copy = (T) obj.getClass().newInstance(); 11:46:49 ^ 11:46:49 where T is a type-variable: 11:46:49 T extends Object declared in class Class 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:49 RawAccessRequest raw = new RawAccessRequest(); 11:46:49 ^ 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:49 RawAccessRequest raw = new RawAccessRequest(); 11:46:49 ^ 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:49 raw.repoUuid = legacy.root().getHash().getValue(); 11:46:49 ^ 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:49 raw.command = "rm"; 11:46:49 ^ 11:46:49 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:49 raw.args = Arrays.asList(path); 11:46:49 ^ 11:46:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 11:46:50 final IObject link = linkClass.newInstance(); 11:46:50 ^ 11:46:50 where T is a type-variable: 11:46:50 T extends Object declared in class Class 11:46:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 11:46:50 originalLink.setChild(annotationClass.newInstance()); 11:46:50 ^ 11:46:50 where T is a type-variable: 11:46:50 T extends Object declared in class Class 11:46:50 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:50 RoiResult r = svc.findByImage(id, new RoiOptions()); 11:46:50 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:51 final RawAccessRequest request = new RawAccessRequest(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:51 final RawAccessRequest request = new RawAccessRequest(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:51 request.repoUuid = repo.root().getHash().getValue(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:51 request.command = "exists"; 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:51 request.args = Collections.singletonList(dirPath); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:51 final RawAccessRequest request = new RawAccessRequest(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 11:46:51 final RawAccessRequest request = new RawAccessRequest(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 11:46:51 request.repoUuid = repo.root().getHash().getValue(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 11:46:51 request.command = "exists"; 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 11:46:51 request.args = Collections.singletonList(dirName); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:51 final ImportJob importJob = new ImportJobI(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 11:46:51 final ImportJob importJob = new ImportJobI(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 11:46:51 importJob.setImageName(omero.rtypes.rstring(name)); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 11:46:51 importJob.setImageDescription(omero.rtypes.rstring(desc)); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:51 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:46:51 final String savedName = sent.getImageName().getValue().toString(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:46:51 final String savedDesc = sent.getImageDescription().getValue().toString(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 11:46:51 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 11:46:51 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 11:46:51 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 RoiResult r = svc.findByImage(image.getId().getValue(), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 11:46:51 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 11:46:51 table = svc.getTable(f.getId().getValue()); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 RoiResult r = svc.findByImage(image.getId().getValue(), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 11:46:51 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:46:51 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 11:46:51 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 11:46:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 11:46:51 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:46:51 svc.getShapeStatsRestricted( 11:46:51 ^ 11:46:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 11:46:51 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 11:46:51 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:52 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:52 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:52 request.typesToIgnore = Collections.singletonList("Annotation"); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 11:46:52 request.typesToIgnore = Collections.singletonList("Annotation"); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:52 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:52 p2.setRelatedTo(p1); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:52 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:52 pixels1.setRelatedTo(pixels2); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:52 Pixels pixels = pixels1.getRelatedTo(); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:52 Assert.assertNull(pixels1.getRelatedTo()); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 11:46:52 pixels1.setRelatedTo(pixels2); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:52 Pixels pixels = pixels1.getRelatedTo(); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 11:46:52 Assert.assertNull(pixels1.getRelatedTo()); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:52 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 11:46:52 ^ 11:46:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 11:46:52 l = svc.getRoiMeasurements(image.getId().getValue(), options); 11:46:52 ^ 11:46:53 Note: Some input files use unchecked or unsafe operations. 11:46:53 Note: Recompile with -Xlint:unchecked for details. 11:46:53 91 warnings 11:46:53 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_977747561.tmp 11:46:53 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 11:46:53 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:53 :: delivering :: omero#OmeroJava-test;working@477d91c674a5 :: 5.6.3-624-8a224c870a-ice36-b11 :: integration :: Thu Jul 16 11:46:36 UTC 2026 11:46:53 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 11:46:53 :: publishing :: omero#OmeroJava-test 11:46:53 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-8a224c870a-ice36-b11.jar 11:46:53 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-624-8a224c870a-ice36-b11.xml 11:46:53 11:46:53 build-eclipse: 11:46:53 No sub-builds to iterate on 11:46:54 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 11:46:54 11:46:54 retrieve: 11:46:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 11:46:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 11:46:59 11:46:59 prepare: 11:46:59 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 11:47:03 11:47:03 release-clients: 11:47:03 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-624-8a224c870a-ice36-b11.zip 11:47:09 11:47:09 release-zip: 11:47:09 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-624-8a224c870a-ice36-b11.zip 11:47:21 11:47:21 BUILD SUCCESSFUL 11:47:21 Total time: 3 minutes 22 seconds 11:47:21 ++ '[' -d .git ']' 11:47:21 ++ python3 ./build.py release-src 11:47:21 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 11:47:22 11:47:22 release-src-git: 11:47:22 Releasing openmicroscopy-5.6.3-624-8a224c870a-ice36-b11 11:47:24 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-8a224c870a-ice36-b11.zip 11:47:24 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-624-8a224c870a-ice36-b11-base.zip 11:47:25 11:47:25 BUILD SUCCESSFUL 11:47:25 Total time: 4 seconds 11:47:25 ++ echo BUILD_NUMBER=11 11:47:25 ++ echo OMERO_BRANCH=merge_ci 11:47:25 ++ git_info 11:47:25 +++ git rev-parse HEAD 11:47:25 ++ HEAD=8a224c870a775c3f5ae19126f391365102cf6cd2 11:47:25 ++ git log --max-count=1 8a224c870a775c3f5ae19126f391365102cf6cd2 11:47:25 ++ env 11:47:25 ++ sort 11:47:25 Archiving artifacts 11:47:42 Finished: SUCCESS