09:50:09 Started by upstream project "Trigger" build number 23 09:50:09 originally caused by: 09:50:09 Started by user devspace 09:50:09 Running as SYSTEM 09:50:09 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 09:50:09 The recommended git tool is: NONE 09:50:09 No credentials specified 09:50:09 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 09:50:09 Fetching changes from the remote Git repository 09:50:09 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 09:50:09 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 09:50:09 > git --version # timeout=10 09:50:09 > git --version # 'git version 2.52.0' 09:50:09 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:50:12 > git rev-parse origin/merge_ci^{commit} # timeout=10 09:50:12 Checking out Revision 916b82979fe290ede6692927383eb4d4acfb15d7 (origin/merge_ci) 09:50:12 > git config core.sparsecheckout # timeout=10 09:50:12 > git checkout -f 916b82979fe290ede6692927383eb4d4acfb15d7 # timeout=10 09:50:16 Commit message: "Add version.properties to etc/omero.properties" 09:50:16 > git rev-list --no-walk 05c9d1bf8ebd213a43ba9ded7fea7c0a748fb869 # timeout=10 09:50:16 Cleaning workspace 09:50:16 > git rev-parse --verify HEAD # timeout=10 09:50:16 Resetting working tree 09:50:16 > git reset --hard # timeout=10 09:50:16 > git clean -fdx # timeout=10 09:50:58 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 13 09:50:59 [OMERO-build] $ /bin/bash -xe /tmp/jenkins1731444064271193782.sh 09:50:59 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 09:50:59 + cd src 09:50:59 + export OMERO_BRANCH=merge_ci 09:50:59 + OMERO_BRANCH=merge_ci 09:50:59 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 09:50:59 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 09:51:34 + source /home/omero/settings.env 09:51:34 ++ OMERO_DB_HOST=pg 09:51:34 ++ OMERO_DB_USER=postgres 09:51:34 ++ OMERO_DB_PASS= 09:51:34 ++ OMERO_ROOT_PASS=omero 09:51:34 ++ OMERO_DATA_DIR=/OMERO 09:51:34 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:51:34 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 09:51:54 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 09:51:55 Collecting zeroc-ice==3.6.5 09:51:56 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 09:51:59 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 12.0 MB/s eta 0:00:00 09:51:59 Installing collected packages: zeroc-ice 09:52:02 Successfully installed zeroc-ice-3.6.5 09:52:02 09:52:02 [notice] A new release of pip available: 22.3.1 -> 26.1.2 09:52:02 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:52:02 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 09:52:03 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 09:52:04 Collecting setuptools<66 09:52:04 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 09:52:04 Collecting omero-py 09:52:04 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 09:52:04 Collecting appdirs 09:52:04 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 09:52:04 Collecting future 09:52:04 Using cached future-1.0.0-py3-none-any.whl (491 kB) 09:52:05 Collecting numpy<3,>=2 09:52:05 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 09:52:06 Collecting Pillow>=10.0.0 09:52:06 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 09:52:06 Collecting PyYAML 09:52:06 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 09:52:06 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 09:52:06 Collecting requests 09:52:06 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 09:52:06 Collecting portalocker 09:52:06 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 09:52:07 Collecting charset_normalizer<4,>=2 09:52:07 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 09:52:07 Collecting idna<4,>=2.5 09:52:07 Using cached idna-3.18-py3-none-any.whl (65 kB) 09:52:07 Collecting urllib3<3,>=1.26 09:52:07 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 09:52:07 Collecting certifi>=2023.5.7 09:52:07 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 09:52:08 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 09:52:09 Attempting uninstall: setuptools 09:52:09 Found existing installation: setuptools 65.5.1 09:52:09 Uninstalling setuptools-65.5.1: 09:52:10 Successfully uninstalled setuptools-65.5.1 09:53:05 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 09:53:05 09:53:05 [notice] A new release of pip available: 22.3.1 -> 26.1.2 09:53:05 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:53:05 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 09:53:05 ++ deactivate nondestructive 09:53:05 ++ '[' -n '' ']' 09:53:05 ++ '[' -n '' ']' 09:53:05 ++ hash -r 09:53:05 ++ '[' -n '' ']' 09:53:05 ++ unset VIRTUAL_ENV 09:53:05 ++ unset VIRTUAL_ENV_PROMPT 09:53:05 ++ '[' '!' nondestructive = nondestructive ']' 09:53:05 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 09:53:05 ++ export VIRTUAL_ENV 09:53:05 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:53:05 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:53:05 ++ export PATH 09:53:05 ++ '[' -n '' ']' 09:53:05 ++ '[' -z '' ']' 09:53:05 ++ _OLD_VIRTUAL_PS1= 09:53:05 ++ PS1='(omero-virtualenv) ' 09:53:05 ++ export PS1 09:53:05 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 09:53:05 ++ export VIRTUAL_ENV_PROMPT 09:53:05 ++ hash -r 09:53:05 + source docs/hudson/OMERO.sh 09:53:05 ++ set -e 09:53:05 ++ set -u 09:53:05 ++ set -x 09:53:05 ++ source docs/hudson/functions.sh 09:53:05 ++ echo Building merge_ci 09:53:05 Building merge_ci 09:53:05 ++ python3 ./build.py build-dev release-all 09:53:05 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:53:06 09:53:06 check-ivy: 09:53:06 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 09:53:06 Created dir: /home/omero/workspace/OMERO-build/src/target 09:53:07 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:53:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:53:08 09:53:08 build-scons: 09:53:08 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:53:10 No sub-builds to iterate on 09:53:10 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:53:11 09:53:11 buildlist: 09:53:11 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:53:11 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:53:11 09:53:11 clean: 09:53:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:53:11 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:53:12 09:53:12 python-clean: 09:53:12 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:53:12 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:53:12 warnings.warn( 09:53:12 running clean 09:53:12 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 09:53:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:53:13 09:53:13 python-clean: 09:53:13 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:53:13 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:53:13 warnings.warn( 09:53:13 running clean 09:53:13 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 09:53:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:53:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:53:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:53:14 09:53:14 python-clean: 09:53:14 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:53:14 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-916b82979f-ice36-b14') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:53:14 warnings.warn( 09:53:14 running clean 09:53:14 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 09:53:14 Deleting directory /home/omero/workspace/OMERO-build/src/target 09:53:15 09:53:15 build-scons: 09:53:15 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:53:17 09:53:17 build: 09:53:17 No sub-builds to iterate on 09:53:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:53:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:53:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:53:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:53:18 09:53:18 tools-init: 09:53:18 no-op 09:53:19 09:53:19 retrieve: 09:53:19 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:53:19 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:54:30 09:54:30 prepare: 09:54:30 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:54:30 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:54:30 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:54:30 09:54:30 pre-compile: 09:54:30 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:54:31 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:54:40 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:54:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:54:45 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:54:48 09:54:48 compile: 09:54:48 no-op 09:54:49 09:54:49 package: 09:54:49 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 09:54:52 09:54:52 install: 09:54:52 :: delivering :: omero#omero_client;working@477d91c674a5 :: 5.6.3-622-916b82979f-ice36-b14 :: integration :: Mon Jul 20 09:53:18 UTC 2026 09:54:52 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 09:54:52 :: publishing :: omero#omero_client 09:54:52 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-916b82979f-ice36-b14/omero_client-5.6.3-622-916b82979f-ice36-b14.jar 09:54:52 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-916b82979f-ice36-b14/omero_client-5.6.3-622-916b82979f-ice36-b14.xml 09:54:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:54:53 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:54:54 09:54:54 retrieve: 09:54:54 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:54:54 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:54:55 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:54:55 09:54:55 dist: 09:54:55 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 09:54:55 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 09:54:55 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:54:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:54:55 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 09:54:56 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 09:54:56 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 09:54:57 Entering /home/omero/workspace/OMERO-build/src/components/tests... 09:54:57 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:54:58 09:54:58 copy-licenses: 09:54:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:54:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 09:54:58 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 09:54:58 09:54:58 copy-history: 09:54:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:54:58 09:54:58 copy-etc: 09:54:58 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 09:54:59 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 09:54:59 09:54:59 copy-sql: 09:54:59 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 09:55:10 09:55:10 copy-server: 09:55:10 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 09:55:15 09:55:15 copy-client: 09:55:15 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 09:55:21 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 09:55:26 09:55:26 update-version: 09:55:26 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 09:55:26 09:55:26 create-workdirs: 09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 09:55:26 09:55:26 copy-luts: 09:55:26 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:55:26 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:55:26 09:55:26 test-compile: 09:55:26 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:55:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:55:28 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:55:28 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:55:29 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:55:29 09:55:29 testng-init: 09:55:29 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:55:29 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:55:37 09:55:37,260 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 09:55:37 09:55:37,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - No custom configurators were discovered as a service. 09:55:37 09:55:37,263 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 09:55:37 09:55:37,267 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 09:55:37 09:55:37,270 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 5 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 09:55:37 09:55:37,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 09:55:37 09:55:37,275 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 09:55:37 09:55:37,276 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 09:55:37 09:55:37,278 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs multiple times on the classpath. 09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:55:37 09:55:37,279 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@7a9794bd - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 09:55:37 09:55:37,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 09:55:37 09:55:37,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 09:55:37 09:55:37,538 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 09:55:37 09:55:37,541 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 09:55:37 09:55:37,541 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Please move "immediateFlush" property into the enclosing appender. 09:55:37 09:55:37,616 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@297727ab - Setting the "immediateFlush" property of the enclosing appender to true 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 09:55:37 09:55:37,618 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 09:55:37 09:55:37,619 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47585784 - End of configuration. 09:55:37 09:55:37,622 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4e5563ef - Registering current configuration as safe fallback point 09:55:37 09:55:37,622 |-INFO in ch.qos.logback.classic.util.ContextInitializer@22457838 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 347 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 09:55:37 09:55:37 lifecycle.test-compile: 09:55:37 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:55:37 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:55:38 warning: [options] bootstrap class path not set in conjunction with -source 8 09:55:38 warning: [options] source value 8 is obsolete and will be removed in a future release 09:55:38 warning: [options] target value 8 is obsolete and will be removed in a future release 09:55:38 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 09:55:39 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:39 import omero.grid.RawAccessRequest; 09:55:39 ^ 09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:40 import omero.grid.RawAccessRequest; 09:55:40 ^ 09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:40 import omero.grid.RawAccessRequest; 09:55:40 ^ 09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:40 import omero.model.ImportJob; 09:55:40 ^ 09:55:40 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:55:40 import omero.model.ImportJobI; 09:55:40 ^ 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 09:55:41 IObject link = (IObject) linkClass.newInstance(); 09:55:41 ^ 09:55:41 where T is a type-variable: 09:55:41 T extends Object declared in class Class 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 09:55:41 T copy = (T) obj.getClass().newInstance(); 09:55:41 ^ 09:55:41 where T is a type-variable: 09:55:41 T extends Object declared in class Class 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:41 RawAccessRequest raw = new RawAccessRequest(); 09:55:41 ^ 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:41 RawAccessRequest raw = new RawAccessRequest(); 09:55:41 ^ 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:55:41 raw.repoUuid = legacy.root().getHash().getValue(); 09:55:41 ^ 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 09:55:41 raw.command = "rm"; 09:55:41 ^ 09:55:41 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 09:55:41 raw.args = Arrays.asList(path); 09:55:41 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 09:55:42 final IObject link = linkClass.newInstance(); 09:55:42 ^ 09:55:42 where T is a type-variable: 09:55:42 T extends Object declared in class Class 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 09:55:42 originalLink.setChild(annotationClass.newInstance()); 09:55:42 ^ 09:55:42 where T is a type-variable: 09:55:42 T extends Object declared in class Class 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:55:42 RoiResult r = svc.findByImage(id, new RoiOptions()); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:42 final RawAccessRequest request = new RawAccessRequest(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:42 final RawAccessRequest request = new RawAccessRequest(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:55:42 request.repoUuid = repo.root().getHash().getValue(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 09:55:42 request.command = "exists"; 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 09:55:42 request.args = Collections.singletonList(dirPath); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:42 final RawAccessRequest request = new RawAccessRequest(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:55:42 final RawAccessRequest request = new RawAccessRequest(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:55:42 request.repoUuid = repo.root().getHash().getValue(); 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 09:55:42 request.command = "exists"; 09:55:42 ^ 09:55:42 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 09:55:42 request.args = Collections.singletonList(dirName); 09:55:42 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:43 final ImportJob importJob = new ImportJobI(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:55:43 final ImportJob importJob = new ImportJobI(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 09:55:43 importJob.setImageName(omero.rtypes.rstring(name)); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 09:55:43 importJob.setImageDescription(omero.rtypes.rstring(desc)); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:43 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:55:43 final String savedName = sent.getImageName().getValue().toString(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:55:43 final String savedDesc = sent.getImageDescription().getValue().toString(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:55:43 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:55:43 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:55:43 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 RoiResult r = svc.findByImage(image.getId().getValue(), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 09:55:43 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 09:55:43 table = svc.getTable(f.getId().getValue()); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 RoiResult r = svc.findByImage(image.getId().getValue(), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:55:43 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:55:43 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:55:43 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 09:55:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:55:43 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:55:43 svc.getShapeStatsRestricted( 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:55:43 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 09:55:43 ^ 09:55:43 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:55:43 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:55:43 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:55:44 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:55:44 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:55:44 request.typesToIgnore = Collections.singletonList("Annotation"); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:55:44 request.typesToIgnore = Collections.singletonList("Annotation"); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:55:44 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:55:44 p2.setRelatedTo(p1); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:55:44 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:55:44 pixels1.setRelatedTo(pixels2); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:55:44 Pixels pixels = pixels1.getRelatedTo(); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:55:44 Assert.assertNull(pixels1.getRelatedTo()); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:55:44 pixels1.setRelatedTo(pixels2); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:55:44 Pixels pixels = pixels1.getRelatedTo(); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:55:44 Assert.assertNull(pixels1.getRelatedTo()); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:44 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:44 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:55:44 ^ 09:55:44 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:55:44 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:55:44 ^ 09:55:44 Note: Some input files use unchecked or unsafe operations. 09:55:44 Note: Recompile with -Xlint:unchecked for details. 09:55:44 91 warnings 09:55:44 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1226015952.tmp 09:55:44 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 09:55:45 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:55:45 :: delivering :: omero#OmeroJava-test;working@477d91c674a5 :: 5.6.3-622-916b82979f-ice36-b14 :: integration :: Mon Jul 20 09:55:28 UTC 2026 09:55:45 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 09:55:45 :: publishing :: omero#OmeroJava-test 09:55:45 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-916b82979f-ice36-b14.jar 09:55:45 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-916b82979f-ice36-b14.xml 09:55:45 09:55:45 build-eclipse: 09:55:45 No sub-builds to iterate on 09:55:45 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:55:46 09:55:46 retrieve: 09:55:46 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:55:46 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:55:50 09:55:50 prepare: 09:55:50 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:55:53 09:55:53 release-clients: 09:55:53 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-916b82979f-ice36-b14.zip 09:55:59 09:55:59 release-zip: 09:55:59 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-916b82979f-ice36-b14.zip 09:56:11 09:56:11 BUILD SUCCESSFUL 09:56:11 Total time: 3 minutes 5 seconds 09:56:11 ++ '[' -d .git ']' 09:56:11 ++ python3 ./build.py release-src 09:56:11 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:56:13 09:56:13 release-src-git: 09:56:13 Releasing openmicroscopy-5.6.3-622-916b82979f-ice36-b14 09:56:14 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-916b82979f-ice36-b14.zip 09:56:14 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-916b82979f-ice36-b14-base.zip 09:56:16 09:56:16 BUILD SUCCESSFUL 09:56:16 Total time: 4 seconds 09:56:16 ++ echo BUILD_NUMBER=14 09:56:16 ++ echo OMERO_BRANCH=merge_ci 09:56:16 ++ git_info 09:56:17 +++ git rev-parse HEAD 09:56:17 ++ HEAD=916b82979fe290ede6692927383eb4d4acfb15d7 09:56:17 ++ git log --max-count=1 916b82979fe290ede6692927383eb4d4acfb15d7 09:56:17 ++ env 09:56:17 ++ sort 09:56:17 Archiving artifacts 09:56:34 Finished: SUCCESS