12:00:30 Started by user devspace 12:00:30 Running as SYSTEM 12:00:30 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 12:00:30 The recommended git tool is: NONE 12:00:30 No credentials specified 12:00:30 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 12:00:30 Fetching changes from the remote Git repository 12:00:30 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 12:00:30 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 12:00:30 > git --version # timeout=10 12:00:30 > git --version # 'git version 2.52.0' 12:00:30 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 12:00:33 > git rev-parse origin/merge_ci^{commit} # timeout=10 12:00:33 Checking out Revision e0180adcad5483fdffd6be4f17eff77fc3d58c30 (origin/merge_ci) 12:00:33 > git config core.sparsecheckout # timeout=10 12:00:33 > git checkout -f e0180adcad5483fdffd6be4f17eff77fc3d58c30 # timeout=10 12:00:48 Commit message: "Add version.properties to etc/omero.properties" 12:00:48 > git rev-list --no-walk f9a7f8ddff9adc5ee6b6e536c6cd5f93091760d8 # timeout=10 12:00:48 Cleaning workspace 12:00:48 > git rev-parse --verify HEAD # timeout=10 12:00:48 Resetting working tree 12:00:48 > git reset --hard # timeout=10 12:00:48 > git clean -fdx # timeout=10 12:01:20 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 21 12:01:21 [OMERO-build] $ /bin/bash -xe /tmp/jenkins5518794795466279186.sh 12:01:21 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 12:01:21 + cd src 12:01:21 + export OMERO_BRANCH=merge_ci 12:01:21 + OMERO_BRANCH=merge_ci 12:01:21 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 12:01:21 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 12:01:48 + source /home/omero/settings.env 12:01:48 ++ OMERO_DB_HOST=pg 12:01:48 ++ OMERO_DB_USER=postgres 12:01:48 ++ OMERO_DB_PASS= 12:01:48 ++ OMERO_ROOT_PASS=omero 12:01:48 ++ OMERO_DATA_DIR=/OMERO 12:01:48 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 12:01:48 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 12:02:10 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 12:02:12 Collecting zeroc-ice==3.6.5 12:02:12 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 12:02:15 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.5 MB/s eta 0:00:00 12:02:15 Installing collected packages: zeroc-ice 12:02:19 Successfully installed zeroc-ice-3.6.5 12:02:19 12:02:19 [notice] A new release of pip available: 22.3.1 -> 26.1.2 12:02:19 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:02:19 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 12:02:20 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 12:02:20 Collecting setuptools<66 12:02:20 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 12:02:20 Collecting omero-py 12:02:20 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 12:02:20 Collecting appdirs 12:02:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 12:02:20 Collecting future 12:02:20 Using cached future-1.0.0-py3-none-any.whl (491 kB) 12:02:21 Collecting numpy<3,>=2 12:02:21 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 12:02:22 Collecting Pillow>=10.0.0 12:02:22 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 12:02:22 Collecting PyYAML 12:02:22 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 12:02:22 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 12:02:22 Collecting requests 12:02:22 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 12:02:22 Collecting portalocker 12:02:22 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 12:02:23 Collecting charset_normalizer<4,>=2 12:02:23 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 12:02:23 Collecting idna<4,>=2.5 12:02:23 Using cached idna-3.18-py3-none-any.whl (65 kB) 12:02:23 Collecting urllib3<3,>=1.26 12:02:23 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 12:02:23 Collecting certifi>=2023.5.7 12:02:23 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 12:02:24 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 12:02:25 Attempting uninstall: setuptools 12:02:25 Found existing installation: setuptools 65.5.1 12:02:25 Uninstalling setuptools-65.5.1: 12:02:26 Successfully uninstalled setuptools-65.5.1 12:03:18 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 12:03:18 12:03:18 [notice] A new release of pip available: 22.3.1 -> 26.1.2 12:03:18 [notice] To update, run: python3.11 -m pip install --upgrade pip 12:03:18 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 12:03:19 ++ deactivate nondestructive 12:03:19 ++ '[' -n '' ']' 12:03:19 ++ '[' -n '' ']' 12:03:19 ++ hash -r 12:03:19 ++ '[' -n '' ']' 12:03:19 ++ unset VIRTUAL_ENV 12:03:19 ++ unset VIRTUAL_ENV_PROMPT 12:03:19 ++ '[' '!' nondestructive = nondestructive ']' 12:03:19 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 12:03:19 ++ export VIRTUAL_ENV 12:03:19 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:03:19 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 12:03:19 ++ export PATH 12:03:19 ++ '[' -n '' ']' 12:03:19 ++ '[' -z '' ']' 12:03:19 ++ _OLD_VIRTUAL_PS1= 12:03:19 ++ PS1='(omero-virtualenv) ' 12:03:19 ++ export PS1 12:03:19 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 12:03:19 ++ export VIRTUAL_ENV_PROMPT 12:03:19 ++ hash -r 12:03:19 + source docs/hudson/OMERO.sh 12:03:19 ++ set -e 12:03:19 ++ set -u 12:03:19 ++ set -x 12:03:19 ++ source docs/hudson/functions.sh 12:03:19 ++ echo Building merge_ci 12:03:19 Building merge_ci 12:03:19 ++ python3 ./build.py build-dev release-all 12:03:19 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:03:20 12:03:20 check-ivy: 12:03:20 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 12:03:20 Created dir: /home/omero/workspace/OMERO-build/src/target 12:03:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:03:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:03:22 12:03:22 build-scons: 12:03:22 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:03:23 No sub-builds to iterate on 12:03:24 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:03:24 12:03:24 buildlist: 12:03:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:03:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:03:24 12:03:24 clean: 12:03:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:03:25 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:03:26 12:03:26 python-clean: 12:03:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:03:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:03:26 warnings.warn( 12:03:26 running clean 12:03:26 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 12:03:26 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:03:26 12:03:26 python-clean: 12:03:26 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:03:26 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:03:26 warnings.warn( 12:03:26 running clean 12:03:27 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:03:27 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:03:28 12:03:28 python-clean: 12:03:28 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 12:03:28 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-623-e0180adcad-ice36-b25') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 12:03:28 warnings.warn( 12:03:28 running clean 12:03:28 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 12:03:28 Deleting directory /home/omero/workspace/OMERO-build/src/target 12:03:29 12:03:29 build-scons: 12:03:29 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 12:03:31 12:03:31 build: 12:03:31 No sub-builds to iterate on 12:03:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:03:31 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:03:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:03:32 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:03:32 12:03:32 tools-init: 12:03:32 no-op 12:03:33 12:03:33 retrieve: 12:03:33 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:03:33 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:04:53 12:04:53 prepare: 12:04:53 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:04:53 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:04:53 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 12:04:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 12:04:54 12:04:54 pre-compile: 12:04:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:04:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:05:04 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:05:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:05:09 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 12:05:11 12:05:11 compile: 12:05:11 no-op 12:05:12 12:05:12 package: 12:05:12 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 12:05:16 12:05:16 install: 12:05:16 :: delivering :: omero#omero_client;working@4590dbd6a4a0 :: 5.6.3-623-e0180adcad-ice36-b25 :: integration :: Wed Jul 29 12:03:32 UTC 2026 12:05:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 12:05:16 :: publishing :: omero#omero_client 12:05:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-e0180adcad-ice36-b25/omero_client-5.6.3-623-e0180adcad-ice36-b25.jar 12:05:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-623-e0180adcad-ice36-b25/omero_client-5.6.3-623-e0180adcad-ice36-b25.xml 12:05:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:05:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:05:18 12:05:18 retrieve: 12:05:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:05:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:05:18 Entering /home/omero/workspace/OMERO-build/src/components/tools... 12:05:18 12:05:18 dist: 12:05:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 12:05:18 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 12:05:18 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:05:18 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 12:05:19 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 12:05:20 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 12:05:20 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 12:05:20 Entering /home/omero/workspace/OMERO-build/src/components/tests... 12:05:21 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:05:22 12:05:22 copy-licenses: 12:05:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:05:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 12:05:22 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 12:05:22 12:05:22 copy-history: 12:05:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 12:05:22 12:05:22 copy-etc: 12:05:22 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 12:05:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 12:05:23 12:05:23 copy-sql: 12:05:23 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 12:05:34 12:05:34 copy-server: 12:05:34 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 12:05:39 12:05:39 copy-client: 12:05:39 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 12:05:43 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 12:05:48 12:05:48 update-version: 12:05:48 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 12:05:48 12:05:48 create-workdirs: 12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 12:05:48 12:05:48 copy-luts: 12:05:48 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:05:48 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 12:05:49 12:05:49 test-compile: 12:05:49 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:05:49 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 12:05:50 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 12:05:51 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:05:51 12:05:51 testng-init: 12:05:51 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:05:51 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:06:00 12:05:59,765 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 12:06:00 12:05:59,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 12:06:00 12:05:59,768 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 12:06:00 12:05:59,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 12:06:00 12:05:59,775 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 12:06:00 12:05:59,778 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 12:06:00 12:05:59,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 12:06:00 12:05:59,779 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 12:06:00 12:05:59,781 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 12:06:00 12:05:59,785 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 12:06:00 12:05:59,786 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 12:06:00 12:05:59,788 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 12:06:00 12:06:00,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 12:06:00 12:06:00,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 12:06:00 12:06:00,062 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 12:06:00 12:06:00,065 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 12:06:00 12:06:00,065 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 12:06:00 12:06:00,137 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 12:06:00 12:06:00,138 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 12:06:00 12:06:00,139 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 12:06:00 12:06:00,142 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 12:06:00 12:06:00,142 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 361 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 12:06:00 12:06:00 lifecycle.test-compile: 12:06:00 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:06:00 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 12:06:00 warning: [options] bootstrap class path not set in conjunction with -source 8 12:06:00 warning: [options] source value 8 is obsolete and will be removed in a future release 12:06:00 warning: [options] target value 8 is obsolete and will be removed in a future release 12:06:00 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 12:06:02 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:02 import omero.grid.RawAccessRequest; 12:06:02 ^ 12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:03 import omero.grid.RawAccessRequest; 12:06:03 ^ 12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:03 import omero.grid.RawAccessRequest; 12:06:03 ^ 12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:03 import omero.model.ImportJob; 12:06:03 ^ 12:06:03 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:06:03 import omero.model.ImportJobI; 12:06:03 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 12:06:04 IObject link = (IObject) linkClass.newInstance(); 12:06:04 ^ 12:06:04 where T is a type-variable: 12:06:04 T extends Object declared in class Class 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 12:06:04 T copy = (T) obj.getClass().newInstance(); 12:06:04 ^ 12:06:04 where T is a type-variable: 12:06:04 T extends Object declared in class Class 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:04 RawAccessRequest raw = new RawAccessRequest(); 12:06:04 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:04 RawAccessRequest raw = new RawAccessRequest(); 12:06:04 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:06:04 raw.repoUuid = legacy.root().getHash().getValue(); 12:06:04 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 12:06:04 raw.command = "rm"; 12:06:04 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 12:06:04 raw.args = Arrays.asList(path); 12:06:04 ^ 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 12:06:04 final IObject link = linkClass.newInstance(); 12:06:04 ^ 12:06:04 where T is a type-variable: 12:06:04 T extends Object declared in class Class 12:06:04 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 12:06:04 originalLink.setChild(annotationClass.newInstance()); 12:06:04 ^ 12:06:04 where T is a type-variable: 12:06:04 T extends Object declared in class Class 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:06:05 RoiResult r = svc.findByImage(id, new RoiOptions()); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:05 final RawAccessRequest request = new RawAccessRequest(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:05 final RawAccessRequest request = new RawAccessRequest(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:06:05 request.repoUuid = repo.root().getHash().getValue(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 12:06:05 request.command = "exists"; 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 12:06:05 request.args = Collections.singletonList(dirPath); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:05 final RawAccessRequest request = new RawAccessRequest(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 12:06:05 final RawAccessRequest request = new RawAccessRequest(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 12:06:05 request.repoUuid = repo.root().getHash().getValue(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 12:06:05 request.command = "exists"; 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 12:06:05 request.args = Collections.singletonList(dirName); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:05 final ImportJob importJob = new ImportJobI(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 12:06:05 final ImportJob importJob = new ImportJobI(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 12:06:05 importJob.setImageName(omero.rtypes.rstring(name)); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 12:06:05 importJob.setImageDescription(omero.rtypes.rstring(desc)); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:05 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:06:05 final String savedName = sent.getImageName().getValue().toString(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:06:05 final String savedDesc = sent.getImageDescription().getValue().toString(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 12:06:05 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 12:06:05 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 12:06:05 ^ 12:06:05 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 12:06:05 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 12:06:05 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 RoiResult r = svc.findByImage(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 12:06:06 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 12:06:06 table = svc.getTable(f.getId().getValue()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 RoiResult r = svc.findByImage(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:06:06 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 12:06:06 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 12:06:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 12:06:06 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:06:06 svc.getShapeStatsRestricted( 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 12:06:06 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:06:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:06:06 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:06:06 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:06:06 request.typesToIgnore = Collections.singletonList("Annotation"); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 12:06:06 request.typesToIgnore = Collections.singletonList("Annotation"); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:06:06 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:06:06 p2.setRelatedTo(p1); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:06:06 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:06:06 pixels1.setRelatedTo(pixels2); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:06:06 Pixels pixels = pixels1.getRelatedTo(); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:06:06 Assert.assertNull(pixels1.getRelatedTo()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 12:06:06 pixels1.setRelatedTo(pixels2); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:06:06 Pixels pixels = pixels1.getRelatedTo(); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 12:06:06 Assert.assertNull(pixels1.getRelatedTo()); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 12:06:06 ^ 12:06:06 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 12:06:06 l = svc.getRoiMeasurements(image.getId().getValue(), options); 12:06:06 ^ 12:06:07 Note: Some input files use unchecked or unsafe operations. 12:06:07 Note: Recompile with -Xlint:unchecked for details. 12:06:07 91 warnings 12:06:07 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_2092631699.tmp 12:06:07 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 12:06:07 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:06:07 :: delivering :: omero#OmeroJava-test;working@4590dbd6a4a0 :: 5.6.3-623-e0180adcad-ice36-b25 :: integration :: Wed Jul 29 12:05:50 UTC 2026 12:06:07 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 12:06:07 :: publishing :: omero#OmeroJava-test 12:06:07 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-e0180adcad-ice36-b25.jar 12:06:07 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-623-e0180adcad-ice36-b25.xml 12:06:08 12:06:08 build-eclipse: 12:06:08 No sub-builds to iterate on 12:06:08 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 12:06:09 12:06:09 retrieve: 12:06:09 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 12:06:09 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 12:06:13 12:06:13 prepare: 12:06:13 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 12:06:17 12:06:17 release-clients: 12:06:17 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-623-e0180adcad-ice36-b25.zip 12:06:23 12:06:23 release-zip: 12:06:23 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-623-e0180adcad-ice36-b25.zip 12:06:35 12:06:35 BUILD SUCCESSFUL 12:06:35 Total time: 3 minutes 15 seconds 12:06:35 ++ '[' -d .git ']' 12:06:35 ++ python3 ./build.py release-src 12:06:35 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 12:06:36 12:06:36 release-src-git: 12:06:36 Releasing openmicroscopy-5.6.3-623-e0180adcad-ice36-b25 12:06:37 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-e0180adcad-ice36-b25.zip 12:06:37 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-623-e0180adcad-ice36-b25-base.zip 12:06:39 12:06:39 BUILD SUCCESSFUL 12:06:39 Total time: 3 seconds 12:06:39 ++ echo BUILD_NUMBER=25 12:06:39 ++ echo OMERO_BRANCH=merge_ci 12:06:39 ++ git_info 12:06:39 +++ git rev-parse HEAD 12:06:39 ++ HEAD=e0180adcad5483fdffd6be4f17eff77fc3d58c30 12:06:39 ++ git log --max-count=1 e0180adcad5483fdffd6be4f17eff77fc3d58c30 12:06:39 ++ env 12:06:39 ++ sort 12:06:39 Archiving artifacts 12:06:55 Finished: SUCCESS