07:17:42 Started by upstream project "Trigger" build number 52 07:17:42 originally caused by: 07:17:42 Started by user devspace 07:17:42 Restarted from build #51, stage OMERO Distribution 07:17:42 Running as SYSTEM 07:17:42 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 07:17:42 The recommended git tool is: NONE 07:17:42 No credentials specified 07:17:42 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 07:17:42 Fetching changes from the remote Git repository 07:17:42 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 07:17:42 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 07:17:42 > git --version # timeout=10 07:17:42 > git --version # 'git version 2.47.3' 07:17:42 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 07:17:43 > git rev-parse origin/merge_ci^{commit} # timeout=10 07:17:43 Checking out Revision 54be68746a121e1c8c57cd0b168719178bc22938 (origin/merge_ci) 07:17:43 > git config core.sparsecheckout # timeout=10 07:17:43 > git checkout -f 54be68746a121e1c8c57cd0b168719178bc22938 # timeout=10 07:17:43 Commit message: "Add version.properties to etc/omero.properties" 07:17:43 > git rev-list --no-walk 6d15fa9b031293aa23bef4151dbdb945df0b61e9 # timeout=10 07:17:43 Cleaning workspace 07:17:43 > git rev-parse --verify HEAD # timeout=10 07:17:43 Resetting working tree 07:17:43 > git reset --hard # timeout=10 07:17:43 > git clean -fdx # timeout=10 07:17:43 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 27 07:17:43 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17791597614591903537.sh 07:17:43 + mv omero-scripts/dist/omero_scripts-5.9.2.dev0.tar.gz . 07:17:43 + cd src 07:17:43 + export OMERO_BRANCH=merge_ci 07:17:43 + OMERO_BRANCH=merge_ci 07:17:43 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 07:17:43 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 07:17:43 + source /home/omero/settings.env 07:17:43 ++ OMERO_DB_HOST=pg 07:17:43 ++ OMERO_DB_USER=postgres 07:17:43 ++ OMERO_DB_PASS= 07:17:43 ++ OMERO_ROOT_PASS=omero 07:17:43 ++ OMERO_DATA_DIR=/OMERO 07:17:43 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 07:17:43 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 07:17:47 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 07:17:47 Collecting zeroc-ice==3.6.5 07:17:47 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 07:17:49 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 20.3 MB/s eta 0:00:00 07:17:49 Installing collected packages: zeroc-ice 07:17:50 Successfully installed zeroc-ice-3.6.5 07:17:50 07:17:50 [notice] A new release of pip available: 22.3.1 -> 25.3 07:17:50 [notice] To update, run: python3.11 -m pip install --upgrade pip 07:17:50 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 07:17:50 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 07:17:51 Collecting setuptools<66 07:17:51 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 07:17:51 Collecting omero-py 07:17:51 Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) 07:17:51 Collecting appdirs 07:17:51 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 07:17:51 Collecting future 07:17:51 Using cached future-1.0.0-py3-none-any.whl (491 kB) 07:17:51 Collecting numpy<3 07:17:51 Using cached numpy-2.4.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.7 MB) 07:17:52 Collecting Pillow>=10.0.0 07:17:52 Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) 07:17:52 Collecting PyYAML 07:17:52 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 07:17:52 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 07:17:52 Collecting requests 07:17:52 Using cached requests-2.32.5-py3-none-any.whl (64 kB) 07:17:52 Collecting portalocker 07:17:52 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 07:17:52 Collecting charset_normalizer<4,>=2 07:17:52 Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) 07:17:52 Collecting idna<4,>=2.5 07:17:52 Using cached idna-3.11-py3-none-any.whl (71 kB) 07:17:52 Collecting urllib3<3,>=1.21.1 07:17:52 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 07:17:53 Collecting certifi>=2017.4.17 07:17:53 Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) 07:17:53 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 07:17:53 Attempting uninstall: setuptools 07:17:53 Found existing installation: setuptools 65.5.1 07:17:53 Uninstalling setuptools-65.5.1: 07:17:53 Successfully uninstalled setuptools-65.5.1 07:17:58 Successfully installed Pillow-12.1.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.1.4 charset_normalizer-3.4.4 future-1.0.0 idna-3.11 numpy-2.4.1 omero-py-5.21.3 portalocker-3.2.0 requests-2.32.5 setuptools-65.7.0 urllib3-2.6.3 07:17:58 07:17:58 [notice] A new release of pip available: 22.3.1 -> 25.3 07:17:58 [notice] To update, run: python3.11 -m pip install --upgrade pip 07:17:58 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 07:17:58 ++ deactivate nondestructive 07:17:58 ++ '[' -n '' ']' 07:17:58 ++ '[' -n '' ']' 07:17:58 ++ hash -r 07:17:58 ++ '[' -n '' ']' 07:17:58 ++ unset VIRTUAL_ENV 07:17:58 ++ unset VIRTUAL_ENV_PROMPT 07:17:58 ++ '[' '!' nondestructive = nondestructive ']' 07:17:58 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 07:17:58 ++ export VIRTUAL_ENV 07:17:58 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:17:58 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 07:17:58 ++ export PATH 07:17:58 ++ '[' -n '' ']' 07:17:58 ++ '[' -z '' ']' 07:17:58 ++ _OLD_VIRTUAL_PS1= 07:17:58 ++ PS1='(omero-virtualenv) ' 07:17:58 ++ export PS1 07:17:58 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 07:17:58 ++ export VIRTUAL_ENV_PROMPT 07:17:58 ++ hash -r 07:17:58 + source docs/hudson/OMERO.sh 07:17:58 ++ set -e 07:17:58 ++ set -u 07:17:58 ++ set -x 07:17:58 ++ source docs/hudson/functions.sh 07:17:58 ++ echo Building merge_ci 07:17:58 Building merge_ci 07:17:58 ++ python3 ./build.py build-dev release-all 07:17:58 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 07:17:59 07:17:59 check-ivy: 07:17:59 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 07:17:59 Created dir: /home/omero/workspace/OMERO-build/src/target 07:17:59 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:17:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:00 07:18:00 build-scons: 07:18:00 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:18:00 No sub-builds to iterate on 07:18:00 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:18:00 07:18:00 buildlist: 07:18:00 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:18:00 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:00 07:18:00 clean: 07:18:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:00 07:18:00 python-clean: 07:18:00 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:18:00 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:18:00 warnings.warn( 07:18:00 running clean 07:18:00 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 07:18:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:18:01 07:18:01 python-clean: 07:18:01 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:18:01 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:18:01 warnings.warn( 07:18:01 running clean 07:18:01 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:01 07:18:01 python-clean: 07:18:01 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 07:18:01 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-584-54be68746a-ice36-b29') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 07:18:01 warnings.warn( 07:18:01 running clean 07:18:01 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 07:18:01 Deleting directory /home/omero/workspace/OMERO-build/src/target 07:18:01 07:18:01 build-scons: 07:18:01 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 07:18:01 07:18:01 build: 07:18:01 No sub-builds to iterate on 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:18:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:18:01 07:18:01 tools-init: 07:18:01 no-op 07:18:02 07:18:02 retrieve: 07:18:02 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:18:02 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:14 07:18:14 prepare: 07:18:14 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:18:14 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 07:18:14 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 07:18:14 07:18:14 pre-compile: 07:18:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:18:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:18:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:18:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:18:14 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 07:18:14 07:18:14 compile: 07:18:14 no-op 07:18:14 07:18:14 package: 07:18:14 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 07:18:15 07:18:15 install: 07:18:15 :: delivering :: omero#omero_client;working@3ed3dc50d100 :: 5.6.3-584-54be68746a-ice36-b29 :: integration :: Fri Jan 23 07:18:01 UTC 2026 07:18:15 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 07:18:15 :: publishing :: omero#omero_client 07:18:15 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-584-54be68746a-ice36-b29/omero_client-5.6.3-584-54be68746a-ice36-b29.jar 07:18:15 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-584-54be68746a-ice36-b29/omero_client-5.6.3-584-54be68746a-ice36-b29.xml 07:18:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:15 07:18:15 retrieve: 07:18:15 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:18:15 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:15 Entering /home/omero/workspace/OMERO-build/src/components/tools... 07:18:15 07:18:15 dist: 07:18:15 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 07:18:15 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 07:18:15 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 07:18:15 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.9.2.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 07:18:15 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 07:18:15 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 07:18:15 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 07:18:15 Entering /home/omero/workspace/OMERO-build/src/components/tests... 07:18:15 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 07:18:16 07:18:16 copy-licenses: 07:18:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 07:18:16 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 07:18:16 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 07:18:16 07:18:16 copy-history: 07:18:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 07:18:16 07:18:16 copy-etc: 07:18:16 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 07:18:16 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 07:18:16 07:18:16 copy-sql: 07:18:16 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 07:18:20 07:18:20 copy-server: 07:18:20 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 07:18:21 07:18:21 copy-client: 07:18:21 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 07:18:22 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 07:18:22 07:18:22 update-version: 07:18:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 07:18:22 07:18:22 create-workdirs: 07:18:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 07:18:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 07:18:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 07:18:22 07:18:22 copy-luts: 07:18:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 07:18:22 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 07:18:22 07:18:22 test-compile: 07:18:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 07:18:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 07:18:22 07:18:22 testng-init: 07:18:22 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 07:18:22 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 07:18:26 07:18:25,824 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 07:18:26 07:18:25,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - No custom configurators were discovered as a service. 07:18:26 07:18:25,826 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 07:18:26 07:18:25,829 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 07:18:26 07:18:25,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 07:18:26 07:18:25,830 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 07:18:26 07:18:25,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 07:18:26 07:18:25,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 07:18:26 07:18:25,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 07:18:26 07:18:25,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 07:18:26 07:18:25,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 07:18:26 07:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs multiple times on the classpath. 07:18:26 07:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 07:18:26 07:18:25,833 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@63e38fc8 - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 07:18:26 07:18:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 07:18:26 07:18:26,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 07:18:26 07:18:26,045 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 07:18:26 07:18:26,047 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 07:18:26 07:18:26,047 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Please move "immediateFlush" property into the enclosing appender. 07:18:26 07:18:26,101 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@523c4a6d - Setting the "immediateFlush" property of the enclosing appender to true 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 07:18:26 07:18:26,102 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 07:18:26 07:18:26,103 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@160b010e - End of configuration. 07:18:26 07:18:26,105 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@742b91a5 - Registering current configuration as safe fallback point 07:18:26 07:18:26,105 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5a4700ba - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 273 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 07:18:26 07:18:26 lifecycle.test-compile: 07:18:26 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:18:26 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 07:18:26 warning: [options] bootstrap class path not set in conjunction with -source 8 07:18:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:27 import omero.grid.RawAccessRequest; 07:18:27 ^ 07:18:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:27 import omero.grid.RawAccessRequest; 07:18:27 ^ 07:18:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:27 import omero.grid.RawAccessRequest; 07:18:27 ^ 07:18:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:27 import omero.model.ImportJob; 07:18:27 ^ 07:18:27 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 07:18:27 import omero.model.ImportJobI; 07:18:27 ^ 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 07:18:28 IObject link = (IObject) linkClass.newInstance(); 07:18:28 ^ 07:18:28 where T is a type-variable: 07:18:28 T extends Object declared in class Class 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 07:18:28 T copy = (T) obj.getClass().newInstance(); 07:18:28 ^ 07:18:28 where T is a type-variable: 07:18:28 T extends Object declared in class Class 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:28 RawAccessRequest raw = new RawAccessRequest(); 07:18:28 ^ 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:28 RawAccessRequest raw = new RawAccessRequest(); 07:18:28 ^ 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:18:28 raw.repoUuid = legacy.root().getHash().getValue(); 07:18:28 ^ 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 07:18:28 raw.command = "rm"; 07:18:28 ^ 07:18:28 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 07:18:28 raw.args = Arrays.asList(path); 07:18:28 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 07:18:29 final IObject link = linkClass.newInstance(); 07:18:29 ^ 07:18:29 where T is a type-variable: 07:18:29 T extends Object declared in class Class 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 07:18:29 originalLink.setChild(annotationClass.newInstance()); 07:18:29 ^ 07:18:29 where T is a type-variable: 07:18:29 T extends Object declared in class Class 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:18:29 RoiResult r = svc.findByImage(id, new RoiOptions()); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:29 final RawAccessRequest request = new RawAccessRequest(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:29 final RawAccessRequest request = new RawAccessRequest(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:18:29 request.repoUuid = repo.root().getHash().getValue(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 07:18:29 request.command = "exists"; 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 07:18:29 request.args = Collections.singletonList(dirPath); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:29 final RawAccessRequest request = new RawAccessRequest(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 07:18:29 final RawAccessRequest request = new RawAccessRequest(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 07:18:29 request.repoUuid = repo.root().getHash().getValue(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 07:18:29 request.command = "exists"; 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 07:18:29 request.args = Collections.singletonList(dirName); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:29 final ImportJob importJob = new ImportJobI(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 07:18:29 final ImportJob importJob = new ImportJobI(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 07:18:29 importJob.setImageName(omero.rtypes.rstring(name)); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 07:18:29 importJob.setImageDescription(omero.rtypes.rstring(desc)); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:29 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:29 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 07:18:29 final String savedName = sent.getImageName().getValue().toString(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 07:18:29 final String savedDesc = sent.getImageDescription().getValue().toString(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:29 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 07:18:29 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 07:18:29 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 07:18:29 ^ 07:18:29 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 07:18:29 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 07:18:29 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 RoiResult r = svc.findByImage(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 07:18:30 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 07:18:30 table = svc.getTable(f.getId().getValue()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 RoiResult r = svc.findByImage(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 07:18:30 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 07:18:30 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 07:18:30 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 07:18:30 svc.getShapeStatsRestricted( 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 07:18:30 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:18:30 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AdditionalDeleteTest.java:681: error: incompatible types: String cannot be converted to RString 07:18:30 file.setName("testing"); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:18:30 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:18:30 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:18:30 request.typesToIgnore = Collections.singletonList("Annotation"); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 07:18:30 request.typesToIgnore = Collections.singletonList("Annotation"); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:18:30 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:18:30 p2.setRelatedTo(p1); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:18:30 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:18:30 pixels1.setRelatedTo(pixels2); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:18:30 Pixels pixels = pixels1.getRelatedTo(); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:18:30 Assert.assertNull(pixels1.getRelatedTo()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 07:18:30 pixels1.setRelatedTo(pixels2); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:18:30 Pixels pixels = pixels1.getRelatedTo(); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 07:18:30 Assert.assertNull(pixels1.getRelatedTo()); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 07:18:30 ^ 07:18:30 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 07:18:30 l = svc.getRoiMeasurements(image.getId().getValue(), options); 07:18:30 ^ 07:18:30 Note: Some input files use unchecked or unsafe operations. 07:18:30 Note: Recompile with -Xlint:unchecked for details. 07:18:30 Note: Some messages have been simplified; recompile with -Xdiags:verbose to get full output 07:18:30 1 error 07:18:30 88 warnings 07:18:30 07:18:30 BUILD FAILED 07:18:30 /home/omero/workspace/OMERO-build/src/build.xml:174: The following error occurred while executing this line: 07:18:30 /home/omero/workspace/OMERO-build/src/build.xml:169: The following error occurred while executing this line: 07:18:30 /home/omero/workspace/OMERO-build/src/components/antlib/resources/global.xml:316: The following error occurred while executing this line: 07:18:30 /home/omero/workspace/OMERO-build/src/components/antlib/resources/lifecycle.xml:263: The following error occurred while executing this line: 07:18:30 /home/omero/workspace/OMERO-build/src/components/antlib/resources/lifecycle.xml:157: Compile failed; see the compiler error output for details. 07:18:30 07:18:30 Total time: 32 seconds 07:18:31 Build step 'Execute shell' marked build as failure 07:18:31 Archiving artifacts 07:18:31 Finished: FAILURE