09:23:38 Started by upstream project "Trigger" build number 42 09:23:38 originally caused by: 09:23:38 Started by user devspace 09:23:38 Running as SYSTEM 09:23:38 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 09:23:38 The recommended git tool is: NONE 09:23:38 No credentials specified 09:23:38 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 09:23:38 Fetching changes from the remote Git repository 09:23:38 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 09:23:38 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 09:23:38 > git --version # timeout=10 09:23:38 > git --version # 'git version 2.52.0' 09:23:38 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 09:23:41 > git rev-parse origin/merge_ci^{commit} # timeout=10 09:23:41 Checking out Revision 9dcf70e17eb693df3a032f408d3a57fd1a216841 (origin/merge_ci) 09:23:41 > git config core.sparsecheckout # timeout=10 09:23:41 > git checkout -f 9dcf70e17eb693df3a032f408d3a57fd1a216841 # timeout=10 09:23:42 Commit message: "Add version.properties to etc/omero.properties" 09:23:42 > git rev-list --no-walk 4200ce5a560278872282579f324b813e24f6765e # timeout=10 09:23:42 Cleaning workspace 09:23:42 > git rev-parse --verify HEAD # timeout=10 09:23:42 Resetting working tree 09:23:42 > git reset --hard # timeout=10 09:23:42 > git clean -fdx # timeout=10 09:24:13 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 27 09:24:13 [OMERO-build] $ /bin/bash -xe /tmp/jenkins17906671931914310338.sh 09:24:13 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 09:24:13 + cd src 09:24:13 + export OMERO_BRANCH=merge_ci 09:24:13 + OMERO_BRANCH=merge_ci 09:24:13 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 09:24:13 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 09:24:35 + source /home/omero/settings.env 09:24:35 ++ OMERO_DB_HOST=pg 09:24:35 ++ OMERO_DB_USER=postgres 09:24:35 ++ OMERO_DB_PASS= 09:24:35 ++ OMERO_ROOT_PASS=omero 09:24:35 ++ OMERO_DATA_DIR=/OMERO 09:24:35 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 09:24:35 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 09:24:53 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 09:24:54 Collecting zeroc-ice==3.6.5 09:24:55 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 09:24:57 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00 09:24:58 Installing collected packages: zeroc-ice 09:25:01 Successfully installed zeroc-ice-3.6.5 09:25:01 09:25:01 [notice] A new release of pip available: 22.3.1 -> 26.2 09:25:01 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:25:01 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 09:25:02 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 09:25:02 Collecting setuptools<66 09:25:02 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 09:25:03 Collecting omero-py 09:25:03 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB) 09:25:03 Collecting appdirs 09:25:03 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 09:25:03 Collecting future 09:25:03 Using cached future-1.0.0-py3-none-any.whl (491 kB) 09:25:03 Collecting numpy<3,>=2 09:25:03 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 09:25:04 Collecting Pillow>=10.0.0 09:25:04 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 09:25:04 Collecting PyYAML 09:25:04 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 09:25:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 09:25:04 Collecting requests 09:25:05 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 09:25:05 Collecting portalocker 09:25:05 Using cached portalocker-4.0.0-py3-none-any.whl (33 kB) 09:25:05 Collecting charset_normalizer<4,>=2 09:25:05 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 09:25:05 Collecting idna<4,>=2.5 09:25:05 Using cached idna-3.18-py3-none-any.whl (65 kB) 09:25:05 Collecting urllib3<3,>=1.26 09:25:05 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 09:25:05 Collecting certifi>=2023.5.7 09:25:05 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) 09:25:06 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 09:25:07 Attempting uninstall: setuptools 09:25:07 Found existing installation: setuptools 65.5.1 09:25:07 Uninstalling setuptools-65.5.1: 09:25:08 Successfully uninstalled setuptools-65.5.1 09:26:06 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.7.22 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.23.0 portalocker-4.0.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 09:26:06 09:26:06 [notice] A new release of pip available: 22.3.1 -> 26.2 09:26:06 [notice] To update, run: python3.11 -m pip install --upgrade pip 09:26:06 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 09:26:06 ++ deactivate nondestructive 09:26:06 ++ '[' -n '' ']' 09:26:06 ++ '[' -n '' ']' 09:26:06 ++ hash -r 09:26:06 ++ '[' -n '' ']' 09:26:06 ++ unset VIRTUAL_ENV 09:26:06 ++ unset VIRTUAL_ENV_PROMPT 09:26:06 ++ '[' '!' nondestructive = nondestructive ']' 09:26:06 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 09:26:06 ++ export VIRTUAL_ENV 09:26:06 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:26:06 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 09:26:06 ++ export PATH 09:26:06 ++ '[' -n '' ']' 09:26:06 ++ '[' -z '' ']' 09:26:06 ++ _OLD_VIRTUAL_PS1= 09:26:06 ++ PS1='(omero-virtualenv) ' 09:26:06 ++ export PS1 09:26:06 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 09:26:06 ++ export VIRTUAL_ENV_PROMPT 09:26:06 ++ hash -r 09:26:06 + source docs/hudson/OMERO.sh 09:26:06 ++ set -e 09:26:06 ++ set -u 09:26:06 ++ set -x 09:26:06 ++ source docs/hudson/functions.sh 09:26:06 ++ echo Building merge_ci 09:26:06 Building merge_ci 09:26:06 ++ python3 ./build.py build-dev release-all 09:26:06 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:26:08 09:26:08 check-ivy: 09:26:08 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 09:26:08 Created dir: /home/omero/workspace/OMERO-build/src/target 09:26:08 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:26:08 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:26:10 09:26:10 build-scons: 09:26:10 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:26:11 No sub-builds to iterate on 09:26:12 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:26:12 09:26:12 buildlist: 09:26:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:26:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:26:12 09:26:12 clean: 09:26:12 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:26:13 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:26:13 09:26:13 python-clean: 09:26:13 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:26:13 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:26:13 warnings.warn( 09:26:13 running clean 09:26:13 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 09:26:14 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:26:14 09:26:14 python-clean: 09:26:14 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:26:14 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:26:14 warnings.warn( 09:26:14 running clean 09:26:14 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 09:26:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:26:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:26:15 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:26:16 09:26:16 python-clean: 09:26:16 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 09:26:16 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-622-9dcf70e17e-ice36-b31') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 09:26:16 warnings.warn( 09:26:16 running clean 09:26:16 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 09:26:16 Deleting directory /home/omero/workspace/OMERO-build/src/target 09:26:17 09:26:17 build-scons: 09:26:17 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 09:26:19 09:26:19 build: 09:26:19 No sub-builds to iterate on 09:26:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:26:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:26:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:26:20 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:26:20 09:26:20 tools-init: 09:26:20 no-op 09:26:20 09:26:20 retrieve: 09:26:20 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:26:20 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:27:54 09:27:54 prepare: 09:27:54 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:27:54 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 09:27:54 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 09:27:54 09:27:54 pre-compile: 09:27:54 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:27:55 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:28:03 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:28:07 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:28:08 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 09:28:10 09:28:10 compile: 09:28:10 no-op 09:28:10 09:28:10 package: 09:28:10 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 09:28:17 09:28:17 install: 09:28:17 :: delivering :: omero#omero_client;working@652802b07c29 :: 5.6.3-622-9dcf70e17e-ice36-b31 :: integration :: Sun Aug 02 09:26:19 UTC 2026 09:28:17 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 09:28:17 :: publishing :: omero#omero_client 09:28:17 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-9dcf70e17e-ice36-b31/omero_client-5.6.3-622-9dcf70e17e-ice36-b31.jar 09:28:17 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-622-9dcf70e17e-ice36-b31/omero_client-5.6.3-622-9dcf70e17e-ice36-b31.xml 09:28:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:28:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:28:18 09:28:18 retrieve: 09:28:18 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:28:18 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:28:19 Entering /home/omero/workspace/OMERO-build/src/components/tools... 09:28:19 09:28:19 dist: 09:28:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 09:28:19 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 09:28:19 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:28:19 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 09:28:20 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 09:28:20 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 09:28:20 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 09:28:21 Entering /home/omero/workspace/OMERO-build/src/components/tests... 09:28:21 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:28:22 09:28:22 copy-licenses: 09:28:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:28:22 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 09:28:22 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 09:28:22 09:28:22 copy-history: 09:28:22 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 09:28:22 09:28:22 copy-etc: 09:28:22 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 09:28:23 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 09:28:23 09:28:23 copy-sql: 09:28:23 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 09:28:35 09:28:35 copy-server: 09:28:35 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 09:28:40 09:28:40 copy-client: 09:28:40 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 09:28:44 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 09:28:58 09:28:58 update-version: 09:28:58 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 09:28:58 09:28:58 create-workdirs: 09:28:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 09:28:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 09:28:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 09:28:58 09:28:58 copy-luts: 09:28:58 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:28:58 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 09:28:59 09:28:59 test-compile: 09:28:59 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:28:59 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 09:29:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:29:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 09:29:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:29:00 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 09:29:00 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 09:29:01 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:29:01 09:29:01 testng-init: 09:29:01 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:29:01 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:29:09 09:29:09,343 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 09:29:09 09:29:09,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 09:29:09 09:29:09,346 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 09:29:09 09:29:09,351 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 09:29:09 09:29:09,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 09:29:09 09:29:09,361 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 09:29:09 09:29:09,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 11 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 09:29:09 09:29:09,362 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 09:29:09 09:29:09,364 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 09:29:09 09:29:09,366 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 09:29:09 09:29:09,367 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:29:09 09:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 09:29:09 09:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 09:29:09 09:29:09,369 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 09:29:09 09:29:09,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 09:29:09 09:29:09,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 09:29:09 09:29:09,649 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 09:29:09 09:29:09,651 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 09:29:09 09:29:09,651 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 09:29:09 09:29:09,726 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 09:29:09 09:29:09,727 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 09:29:09 09:29:09,728 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 09:29:09 09:29:09,731 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 09:29:09 09:29:09,731 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 367 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 09:29:09 09:29:09 lifecycle.test-compile: 09:29:09 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:29:09 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 09:29:10 warning: [options] bootstrap class path not set in conjunction with -source 8 09:29:10 warning: [options] source value 8 is obsolete and will be removed in a future release 09:29:10 warning: [options] target value 8 is obsolete and will be removed in a future release 09:29:10 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 09:29:11 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:11 import omero.grid.RawAccessRequest; 09:29:11 ^ 09:29:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:12 import omero.grid.RawAccessRequest; 09:29:12 ^ 09:29:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:12 import omero.grid.RawAccessRequest; 09:29:12 ^ 09:29:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:12 import omero.model.ImportJob; 09:29:12 ^ 09:29:12 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:29:12 import omero.model.ImportJobI; 09:29:12 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 09:29:13 IObject link = (IObject) linkClass.newInstance(); 09:29:13 ^ 09:29:13 where T is a type-variable: 09:29:13 T extends Object declared in class Class 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 09:29:13 T copy = (T) obj.getClass().newInstance(); 09:29:13 ^ 09:29:13 where T is a type-variable: 09:29:13 T extends Object declared in class Class 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:13 RawAccessRequest raw = new RawAccessRequest(); 09:29:13 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:13 RawAccessRequest raw = new RawAccessRequest(); 09:29:13 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:29:13 raw.repoUuid = legacy.root().getHash().getValue(); 09:29:13 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 09:29:13 raw.command = "rm"; 09:29:13 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 09:29:13 raw.args = Arrays.asList(path); 09:29:13 ^ 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 09:29:13 final IObject link = linkClass.newInstance(); 09:29:13 ^ 09:29:13 where T is a type-variable: 09:29:13 T extends Object declared in class Class 09:29:13 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 09:29:13 originalLink.setChild(annotationClass.newInstance()); 09:29:13 ^ 09:29:13 where T is a type-variable: 09:29:13 T extends Object declared in class Class 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:29:14 RoiResult r = svc.findByImage(id, new RoiOptions()); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:14 final RawAccessRequest request = new RawAccessRequest(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:14 final RawAccessRequest request = new RawAccessRequest(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:29:14 request.repoUuid = repo.root().getHash().getValue(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 09:29:14 request.command = "exists"; 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 09:29:14 request.args = Collections.singletonList(dirPath); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:14 final RawAccessRequest request = new RawAccessRequest(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 09:29:14 final RawAccessRequest request = new RawAccessRequest(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 09:29:14 request.repoUuid = repo.root().getHash().getValue(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 09:29:14 request.command = "exists"; 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 09:29:14 request.args = Collections.singletonList(dirName); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:14 final ImportJob importJob = new ImportJobI(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 09:29:14 final ImportJob importJob = new ImportJobI(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 09:29:14 importJob.setImageName(omero.rtypes.rstring(name)); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 09:29:14 importJob.setImageDescription(omero.rtypes.rstring(desc)); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:14 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:29:14 final String savedName = sent.getImageName().getValue().toString(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:29:14 final String savedDesc = sent.getImageDescription().getValue().toString(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 09:29:14 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 09:29:14 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 09:29:14 ^ 09:29:14 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 09:29:14 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 09:29:14 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 RoiResult r = svc.findByImage(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 09:29:15 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 09:29:15 table = svc.getTable(f.getId().getValue()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 RoiResult r = svc.findByImage(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:29:15 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 09:29:15 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 09:29:15 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:29:15 svc.getShapeStatsRestricted( 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 09:29:15 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:29:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:29:15 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:29:15 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:29:15 request.typesToIgnore = Collections.singletonList("Annotation"); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 09:29:15 request.typesToIgnore = Collections.singletonList("Annotation"); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:29:15 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:29:15 p2.setRelatedTo(p1); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:29:15 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:29:15 pixels1.setRelatedTo(pixels2); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:29:15 Pixels pixels = pixels1.getRelatedTo(); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:29:15 Assert.assertNull(pixels1.getRelatedTo()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 09:29:15 pixels1.setRelatedTo(pixels2); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:29:15 Pixels pixels = pixels1.getRelatedTo(); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 09:29:15 Assert.assertNull(pixels1.getRelatedTo()); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 09:29:15 ^ 09:29:15 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 09:29:15 l = svc.getRoiMeasurements(image.getId().getValue(), options); 09:29:15 ^ 09:29:16 Note: Some input files use unchecked or unsafe operations. 09:29:16 Note: Recompile with -Xlint:unchecked for details. 09:29:16 91 warnings 09:29:16 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_661593243.tmp 09:29:16 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 09:29:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:29:16 :: delivering :: omero#OmeroJava-test;working@652802b07c29 :: 5.6.3-622-9dcf70e17e-ice36-b31 :: integration :: Sun Aug 02 09:29:00 UTC 2026 09:29:16 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 09:29:16 :: publishing :: omero#OmeroJava-test 09:29:16 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-9dcf70e17e-ice36-b31.jar 09:29:16 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-622-9dcf70e17e-ice36-b31.xml 09:29:16 09:29:16 build-eclipse: 09:29:16 No sub-builds to iterate on 09:29:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 09:29:17 09:29:17 retrieve: 09:29:17 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 09:29:17 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 09:29:21 09:29:21 prepare: 09:29:21 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 09:29:26 09:29:26 release-clients: 09:29:26 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:29:32 09:29:32 release-zip: 09:29:32 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:29:43 09:29:43 BUILD SUCCESSFUL 09:29:43 Total time: 3 minutes 37 seconds 09:29:43 ++ '[' -d .git ']' 09:29:43 ++ python3 ./build.py release-src 09:29:44 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 09:29:45 09:29:45 release-src-git: 09:29:45 Releasing openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31 09:29:46 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31.zip 09:29:46 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-622-9dcf70e17e-ice36-b31-base.zip 09:29:48 09:29:48 BUILD SUCCESSFUL 09:29:48 Total time: 4 seconds 09:29:48 ++ echo BUILD_NUMBER=31 09:29:48 ++ echo OMERO_BRANCH=merge_ci 09:29:48 ++ git_info 09:29:48 +++ git rev-parse HEAD 09:29:48 ++ HEAD=9dcf70e17eb693df3a032f408d3a57fd1a216841 09:29:48 ++ git log --max-count=1 9dcf70e17eb693df3a032f408d3a57fd1a216841 09:29:48 ++ env 09:29:48 ++ sort 09:29:48 Archiving artifacts 09:30:07 Finished: SUCCESS