01:16:48 Started by upstream project "Trigger" build number 9 01:16:48 originally caused by: 01:16:48 Started by timer 01:16:48 Running as SYSTEM 01:16:48 Building remotely on testintegration (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-build 01:16:48 The recommended git tool is: NONE 01:16:48 No credentials specified 01:16:48 > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-build/src/.git # timeout=10 01:16:48 Fetching changes from the remote Git repository 01:16:48 > git config remote.origin.url https://github.com/snoopycrimecop/openmicroscopy.git # timeout=10 01:16:48 Fetching upstream changes from https://github.com/snoopycrimecop/openmicroscopy.git 01:16:48 > git --version # timeout=10 01:16:48 > git --version # 'git version 2.52.0' 01:16:48 > git fetch --tags --force --progress -- https://github.com/snoopycrimecop/openmicroscopy.git +refs/heads/*:refs/remotes/origin/* # timeout=30 01:16:51 > git rev-parse origin/merge_ci^{commit} # timeout=10 01:16:52 Checking out Revision 46d99bded239515ad66c1cf748504c5126ef857a (origin/merge_ci) 01:16:52 > git config core.sparsecheckout # timeout=10 01:16:52 > git checkout -f 46d99bded239515ad66c1cf748504c5126ef857a # timeout=10 01:16:54 Commit message: "Add version.properties to etc/omero.properties" 01:16:54 > git rev-list --no-walk 3c139506b6e3795d2a0b8803bb3049ecfd7b34f7 # timeout=10 01:16:54 Cleaning workspace 01:16:54 > git rev-parse --verify HEAD # timeout=10 01:16:54 Resetting working tree 01:16:54 > git reset --hard # timeout=10 01:16:54 > git clean -fdx # timeout=10 01:17:21 Copied 6 artifacts from "OMERO-python-superbuild-build" build number 4 01:17:22 [OMERO-build] $ /bin/bash -xe /tmp/jenkins8022830923130945322.sh 01:17:22 + mv omero-scripts/dist/omero_scripts-5.10.1.dev0.tar.gz . 01:17:22 + cd src 01:17:22 + export OMERO_BRANCH=merge_ci 01:17:22 + OMERO_BRANCH=merge_ci 01:17:22 + OMERO_VEN=/home/omero/workspace/OMERO-build/omero-virtualenv 01:17:22 + rm -rf /home/omero/workspace/OMERO-build/omero-virtualenv 01:17:47 + source /home/omero/settings.env 01:17:47 ++ OMERO_DB_HOST=pg 01:17:47 ++ OMERO_DB_USER=postgres 01:17:47 ++ OMERO_DB_PASS= 01:17:47 ++ OMERO_ROOT_PASS=omero 01:17:47 ++ OMERO_DATA_DIR=/OMERO 01:17:47 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 01:17:47 + python3.11 -m venv /home/omero/workspace/OMERO-build/omero-virtualenv 01:18:07 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 01:18:08 Collecting zeroc-ice==3.6.5 01:18:08 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 01:18:11 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 11.8 MB/s eta 0:00:00 01:18:11 Installing collected packages: zeroc-ice 01:18:15 Successfully installed zeroc-ice-3.6.5 01:18:15 01:18:15 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:18:15 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:18:15 + /home/omero/workspace/OMERO-build/omero-virtualenv/bin/pip install -U 'setuptools<66' omero-py 01:18:16 Requirement already satisfied: setuptools<66 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (65.5.1) 01:18:16 Collecting setuptools<66 01:18:16 Using cached setuptools-65.7.0-py3-none-any.whl (1.2 MB) 01:18:16 Collecting omero-py 01:18:16 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 01:18:16 Collecting appdirs 01:18:17 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 01:18:17 Collecting future 01:18:17 Using cached future-1.0.0-py3-none-any.whl (491 kB) 01:18:17 Collecting numpy<3,>=2 01:18:17 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 01:18:18 Collecting Pillow>=10.0.0 01:18:18 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) 01:18:18 Collecting PyYAML 01:18:18 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 01:18:18 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages (from omero-py) (3.6.5) 01:18:18 Collecting requests 01:18:18 Using cached requests-2.34.2-py3-none-any.whl (73 kB) 01:18:18 Collecting portalocker 01:18:19 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 01:18:19 Collecting charset_normalizer<4,>=2 01:18:19 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) 01:18:19 Collecting idna<4,>=2.5 01:18:19 Using cached idna-3.18-py3-none-any.whl (65 kB) 01:18:19 Collecting urllib3<3,>=1.26 01:18:19 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) 01:18:19 Collecting certifi>=2023.5.7 01:18:19 Using cached certifi-2026.6.17-py3-none-any.whl (133 kB) 01:18:20 Installing collected packages: appdirs, urllib3, setuptools, PyYAML, portalocker, Pillow, numpy, idna, future, charset_normalizer, certifi, requests, omero-py 01:18:21 Attempting uninstall: setuptools 01:18:21 Found existing installation: setuptools 65.5.1 01:18:21 Uninstalling setuptools-65.5.1: 01:18:22 Successfully uninstalled setuptools-65.5.1 01:19:10 Successfully installed Pillow-12.3.0 PyYAML-6.0.3 appdirs-1.4.4 certifi-2026.6.17 charset_normalizer-3.4.9 future-1.0.0 idna-3.18 numpy-2.4.6 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 setuptools-65.7.0 urllib3-2.7.0 01:19:10 01:19:10 [notice] A new release of pip available: 22.3.1 -> 26.1.2 01:19:10 [notice] To update, run: python3.11 -m pip install --upgrade pip 01:19:10 + source /home/omero/workspace/OMERO-build/omero-virtualenv/bin/activate 01:19:10 ++ deactivate nondestructive 01:19:10 ++ '[' -n '' ']' 01:19:10 ++ '[' -n '' ']' 01:19:10 ++ hash -r 01:19:10 ++ '[' -n '' ']' 01:19:10 ++ unset VIRTUAL_ENV 01:19:10 ++ unset VIRTUAL_ENV_PROMPT 01:19:10 ++ '[' '!' nondestructive = nondestructive ']' 01:19:10 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-build/omero-virtualenv 01:19:10 ++ export VIRTUAL_ENV 01:19:10 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:19:10 ++ PATH=/home/omero/workspace/OMERO-build/omero-virtualenv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 01:19:10 ++ export PATH 01:19:10 ++ '[' -n '' ']' 01:19:10 ++ '[' -z '' ']' 01:19:10 ++ _OLD_VIRTUAL_PS1= 01:19:10 ++ PS1='(omero-virtualenv) ' 01:19:10 ++ export PS1 01:19:10 ++ VIRTUAL_ENV_PROMPT='(omero-virtualenv) ' 01:19:10 ++ export VIRTUAL_ENV_PROMPT 01:19:10 ++ hash -r 01:19:10 + source docs/hudson/OMERO.sh 01:19:10 ++ set -e 01:19:10 ++ set -u 01:19:10 ++ set -x 01:19:10 ++ source docs/hudson/functions.sh 01:19:10 ++ echo Building merge_ci 01:19:10 Building merge_ci 01:19:10 ++ python3 ./build.py build-dev release-all 01:19:10 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:19:12 01:19:12 check-ivy: 01:19:12 Creating /home/omero/workspace/OMERO-build/src/etc/local.properties 01:19:12 Created dir: /home/omero/workspace/OMERO-build/src/target 01:19:12 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:19:12 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:19:13 01:19:13 build-scons: 01:19:13 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:19:15 No sub-builds to iterate on 01:19:15 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:19:16 01:19:16 buildlist: 01:19:16 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:19:16 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:19:16 01:19:16 clean: 01:19:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:19:16 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:19:17 01:19:17 python-clean: 01:19:17 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:19:17 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:19:17 warnings.warn( 01:19:17 running clean 01:19:17 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb/omero_version.py 01:19:17 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:19:18 01:19:18 python-clean: 01:19:18 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:19:18 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:19:18 warnings.warn( 01:19:18 running clean 01:19:18 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS/omero_version.py 01:19:18 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:19:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:19:19 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:19:19 01:19:19 python-clean: 01:19:19 WARNING: '' not a valid package name; please use only .-separated package names in setup.py 01:19:19 /home/omero/workspace/OMERO-build/omero-virtualenv/lib64/python3.11/site-packages/setuptools/dist.py:543: UserWarning: The version specified ('5.6.3-614-46d99bded2-ice36-b5') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. 01:19:19 warnings.warn( 01:19:19 running clean 01:19:19 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy/omero_version.py 01:19:19 Deleting directory /home/omero/workspace/OMERO-build/src/target 01:19:20 01:19:20 build-scons: 01:19:20 Expanding: /home/omero/workspace/OMERO-build/src/lib/repository/scons-local-2.1.0.zip into /home/omero/workspace/OMERO-build/src/target/scons 01:19:22 01:19:22 build: 01:19:22 No sub-builds to iterate on 01:19:22 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:19:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:19:23 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:19:24 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:19:24 01:19:24 tools-init: 01:19:24 no-op 01:19:24 01:19:24 retrieve: 01:19:24 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:19:24 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:20:44 01:20:44 prepare: 01:20:44 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/.done 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/src 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:20:44 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/reports 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources 01:20:44 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes 01:20:44 01:20:44 pre-compile: 01:20:44 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/glacier2.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:20:46 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ice.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:20:53 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icegrid.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:20:57 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/icestorm.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:20:58 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs/ome-xml.jar into /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated-classes 01:21:00 01:21:00 compile: 01:21:00 no-op 01:21:00 01:21:00 package: 01:21:00 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/omero_client.jar 01:21:04 01:21:04 install: 01:21:04 :: delivering :: omero#omero_client;working@5037f1a69d97 :: 5.6.3-614-46d99bded2-ice36-b5 :: integration :: Fri Jul 10 01:19:23 UTC 2026 01:21:04 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/ivy.xml 01:21:04 :: publishing :: omero#omero_client 01:21:04 published omero_client to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-46d99bded2-ice36-b5/omero_client-5.6.3-614-46d99bded2-ice36-b5.jar 01:21:04 published ivy to /home/omero/workspace/OMERO-build/src/target/repository/omero/omero_client/5.6.3-614-46d99bded2-ice36-b5/omero_client-5.6.3-614-46d99bded2-ice36-b5.xml 01:21:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:05 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:05 01:21:05 retrieve: 01:21:05 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:05 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:06 Entering /home/omero/workspace/OMERO-build/src/components/tools... 01:21:06 01:21:06 dist: 01:21:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/service-classes/META-INF 01:21:06 Created dir: /home/omero/workspace/OMERO-build/src/components/tools/target/lib/server 01:21:06 Copying 1 file to /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:21:06 Expanding: /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts/omero_scripts-5.10.1.dev0.tar.gz into /home/omero/workspace/OMERO-build/src/components/tools/target/downloads/scripts 01:21:07 Copying 29 files to /home/omero/workspace/OMERO-build/src/components/tools/target/lib/scripts 01:21:07 Copying 29 files to /home/omero/workspace/OMERO-build/src/dist 01:21:07 Copied 9 empty directories to 1 empty directory under /home/omero/workspace/OMERO-build/src/dist 01:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tests... 01:21:08 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:21:09 01:21:09 copy-licenses: 01:21:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:21:09 Created dir: /home/omero/workspace/OMERO-build/src/dist/share 01:21:09 Copying 44 files to /home/omero/workspace/OMERO-build/src/dist/share 01:21:09 01:21:09 copy-history: 01:21:09 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist 01:21:09 01:21:09 copy-etc: 01:21:09 Copying 28 files to /home/omero/workspace/OMERO-build/src/dist/etc 01:21:10 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc/templates 01:21:10 01:21:10 copy-sql: 01:21:10 Copying 60 files to /home/omero/workspace/OMERO-build/src/dist 01:21:23 01:21:23 copy-server: 01:21:23 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/server/janino.jar in [server]: 3.1.9 won 01:21:28 01:21:28 copy-client: 01:21:28 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/client 01:21:32 conflict on /home/omero/workspace/OMERO-build/src/dist/lib/client/janino.jar in [client]: 3.1.9 won 01:21:37 01:21:37 update-version: 01:21:37 Copying 1 file to /home/omero/workspace/OMERO-build/src/dist/etc 01:21:37 01:21:37 create-workdirs: 01:21:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/etc/grid 01:21:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/var 01:21:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/var/tmp 01:21:37 01:21:37 copy-luts: 01:21:37 Created dir: /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:21:37 Copying 47 files to /home/omero/workspace/OMERO-build/src/dist/lib/scripts/luts 01:21:38 01:21:38 test-compile: 01:21:38 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:38 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroFS... 01:21:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroPy... 01:21:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:39 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroWeb... 01:21:40 Entering /home/omero/workspace/OMERO-build/src/components/tests/ui... 01:21:40 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:21:40 01:21:40 testng-init: 01:21:40 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:40 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:49 01:21:49,081 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.16 01:21:49 01:21:49,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - No custom configurators were discovered as a service. 01:21:49 01:21:49,084 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator 01:21:49 01:21:49,087 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator 01:21:49 01:21:49,091 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] 01:21:49 01:21:49,093 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] 01:21:49 01:21:49,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 7 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY 01:21:49 01:21:49,094 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator 01:21:49 01:21:49,096 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator 01:21:49 01:21:49,098 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] 01:21:49 01:21:49,099 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:21:49 01:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs multiple times on the classpath. 01:21:49 01:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/classes/logback.xml] 01:21:49 01:21:49,101 |-WARN in ch.qos.logback.classic.util.DefaultJoranConfigurator@24df8abf - Resource [logback.xml] occurs at [file:/home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/generated/resources/logback.xml] 01:21:49 01:21:49,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stderr] 01:21:49 01:21:49,332 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] 01:21:49 01:21:49,355 |-INFO in ch.qos.logback.core.model.processor.ImplicitModelHandler - Assuming default type [ch.qos.logback.classic.encoder.PatternLayoutEncoder] for [encoder] property 01:21:49 01:21:49,357 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - As of version 1.2.0 "immediateFlush" property should be set within the enclosing Appender. 01:21:49 01:21:49,357 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Please move "immediateFlush" property into the enclosing appender. 01:21:49 01:21:49,430 |-WARN in ch.qos.logback.classic.encoder.PatternLayoutEncoder@390d47db - Setting the "immediateFlush" property of the enclosing appender to true 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [velocity] to ERROR 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [org] to ERROR 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [ome] to ERROR 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci] to ERROR 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to WARN 01:21:49 01:21:49,431 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stderr] to Logger[ROOT] 01:21:49 01:21:49,433 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@6aa09c35 - End of configuration. 01:21:49 01:21:49,435 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@22457838 - Registering current configuration as safe fallback point 01:21:49 01:21:49,435 |-INFO in ch.qos.logback.classic.util.ContextInitializer@1492c9d - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 339 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY 01:21:49 01:21:49 lifecycle.test-compile: 01:21:49 Copying 3 files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:21:49 Compiling 85 source files to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/test-classes 01:21:49 warning: [options] bootstrap class path not set in conjunction with -source 8 01:21:49 warning: [options] source value 8 is obsolete and will be removed in a future release 01:21:49 warning: [options] target value 8 is obsolete and will be removed in a future release 01:21:49 warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 01:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/AbstractServerTest.java:61: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:51 import omero.grid.RawAccessRequest; 01:21:51 ^ 01:21:51 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:32: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:51 import omero.grid.RawAccessRequest; 01:21:51 ^ 01:21:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:53: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:52 import omero.grid.RawAccessRequest; 01:21:52 ^ 01:21:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:31: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:52 import omero.model.ImportJob; 01:21:52 ^ 01:21:52 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:32: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:21:52 import omero.model.ImportJobI; 01:21:52 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ModelMockFactory.java:1206: warning: [deprecation] newInstance() in Class has been deprecated 01:21:53 IObject link = (IObject) linkClass.newInstance(); 01:21:53 ^ 01:21:53 where T is a type-variable: 01:21:53 T extends Object declared in class Class 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/CreatePojosFixture2.java:269: warning: [deprecation] newInstance() in Class has been deprecated 01:21:53 T copy = (T) obj.getClass().newInstance(); 01:21:53 ^ 01:21:53 where T is a type-variable: 01:21:53 T extends Object declared in class Class 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:53 RawAccessRequest raw = new RawAccessRequest(); 01:21:53 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:418: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:53 RawAccessRequest raw = new RawAccessRequest(); 01:21:53 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:419: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:21:53 raw.repoUuid = legacy.root().getHash().getValue(); 01:21:53 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:420: warning: [deprecation] command in RawAccessRequest has been deprecated 01:21:53 raw.command = "rm"; 01:21:53 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DeleteServiceFilesTest.java:421: warning: [deprecation] args in RawAccessRequest has been deprecated 01:21:53 raw.args = Arrays.asList(path); 01:21:53 ^ 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DiskUsageTest.java:156: warning: [deprecation] newInstance() in Class has been deprecated 01:21:53 final IObject link = linkClass.newInstance(); 01:21:53 ^ 01:21:53 where T is a type-variable: 01:21:53 T extends Object declared in class Class 01:21:53 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/DuplicationTest.java:1332: warning: [deprecation] newInstance() in Class has been deprecated 01:21:53 originalLink.setChild(annotationClass.newInstance()); 01:21:53 ^ 01:21:53 where T is a type-variable: 01:21:53 T extends Object declared in class Class 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ImporterTest.java:1088: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:21:54 RoiResult r = svc.findByImage(id, new RoiOptions()); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:54 final RawAccessRequest request = new RawAccessRequest(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:900: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:54 final RawAccessRequest request = new RawAccessRequest(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:901: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:21:54 request.repoUuid = repo.root().getHash().getValue(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:902: warning: [deprecation] command in RawAccessRequest has been deprecated 01:21:54 request.command = "exists"; 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:903: warning: [deprecation] args in RawAccessRequest has been deprecated 01:21:54 request.args = Collections.singletonList(dirPath); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:54 final RawAccessRequest request = new RawAccessRequest(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:939: warning: [deprecation] RawAccessRequest in omero.grid has been deprecated 01:21:54 final RawAccessRequest request = new RawAccessRequest(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:940: warning: [deprecation] repoUuid in RawAccessRequest has been deprecated 01:21:54 request.repoUuid = repo.root().getHash().getValue(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:941: warning: [deprecation] command in RawAccessRequest has been deprecated 01:21:54 request.command = "exists"; 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ManagedRepositoryTest.java:942: warning: [deprecation] args in RawAccessRequest has been deprecated 01:21:54 request.args = Collections.singletonList(dirName); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:54 final ImportJob importJob = new ImportJobI(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:255: warning: [deprecation] ImportJobI in omero.model has been deprecated 01:21:54 final ImportJob importJob = new ImportJobI(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:266: warning: [deprecation] setImageName(RString) in ImportJob has been deprecated 01:21:54 importJob.setImageName(omero.rtypes.rstring(name)); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:268: warning: [deprecation] setImageDescription(RString) in ImportJob has been deprecated 01:21:54 importJob.setImageDescription(omero.rtypes.rstring(desc)); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:273: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:54 ImportJob sent = (ImportJob) iUpdate.saveAndReturnObject(importJob); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:274: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:21:54 final String savedName = sent.getImageName().getValue().toString(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:275: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:21:54 final String savedDesc = sent.getImageDescription().getValue().toString(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:277: warning: [deprecation] ImportJob in omero.model has been deprecated 01:21:54 final ImportJob retrievedImportJob = (ImportJob) iQuery.get("ImportJob", id); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:278: warning: [deprecation] getImageName() in ImportJob has been deprecated 01:21:54 final String retrievedName = retrievedImportJob.getImageName().getValue().toString(); 01:21:54 ^ 01:21:54 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/ObjectPropertiesTest.java:279: warning: [deprecation] getImageDescription() in ImportJob has been deprecated 01:21:54 final String retrievedDesc = retrievedImportJob.getImageDescription().getValue().toString(); 01:21:54 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:141: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 RoiResult r = svc.findByImage(image.getId().getValue(), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:190: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:220: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:241: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:313: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:320: warning: [deprecation] getMeasuredRoisMap(long,List<Long>,RoiOptions) in IRoiPrx has been deprecated 01:21:55 Map<Long, RoiResult> values = svc.getMeasuredRoisMap(image.getId() 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:386: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:390: warning: [deprecation] getTable(long) in IRoiPrx has been deprecated 01:21:55 table = svc.getTable(f.getId().getValue()); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:412: warning: [deprecation] findByImage(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 RoiResult r = svc.findByImage(image.getId().getValue(), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:426: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 r = svc.findByRoi(r1.getId().getValue(), new RoiOptions()); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:437: warning: [deprecation] findByRoi(long,RoiOptions) in IRoiPrx has been deprecated 01:21:55 r = svc.findByRoi(r2.getId().getValue(), new RoiOptions()); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:448: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:21:55 r = svc.findByPlane(image.getId().getValue(), 1, 0, new RoiOptions()); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:459: warning: [deprecation] findByPlane(long,int,int,RoiOptions) in IRoiPrx has been deprecated 01:21:55 r = svc.findByPlane(image.getId().getValue(), 1, 1, new RoiOptions()); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:733: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 null, new Integer(0), new Integer(0), new int[] {0}, "null ids"}); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:735: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 new ArrayList<Long>(), new Integer(0), new Integer(0), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Long(long) in Long has been deprecated and marked for removal 01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:738: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 Arrays.asList(new Long[] {new Long (-1)}), new Integer(0), new Integer(0), 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:740: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(10), new Integer(10), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:742: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(-10), new int[] {0}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:744: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {200}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:746: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), null, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:748: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal 01:21:55 inputs.add(new Object[] { ids, new Integer(0), new Integer(0), new int[] {}, 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:755: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:21:55 svc.getShapeStatsRestricted( 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/RoiServiceTest.java:764: warning: [deprecation] getShapeStatsRestricted(List<Long>,int,int,int[]) in IRoiPrx has been deprecated 01:21:55 final ShapeStats [] stats = svc.getShapeStatsRestricted(ids, 0, 0, new int[] {0}); 01:21:55 ^ 01:21:55 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/chgrp/HierarchyMoveTest.java:1030: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:21:55 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:21:55 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:478: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:21:56 request.typesToIgnore = Collections.singletonList("TagAnnotation"); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:495: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:21:56 request.typesToIgnore = Collections.singletonList("IAnnotationLink"); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:501: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:21:56 request.typesToIgnore = Collections.singletonList("Annotation"); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/AnnotationDeleteTest.java:547: warning: [deprecation] typesToIgnore in Delete2 has been deprecated 01:21:56 request.typesToIgnore = Collections.singletonList("Annotation"); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/HierarchyDeleteTest.java:537: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:21:56 projection.getPrimaryPixels().setRelatedTo((Pixels) original.getPrimaryPixels().proxy()); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:37: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:21:56 p2.setRelatedTo(p1); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:39: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:21:56 Assert.assertEquals(p1.getId(), p2.getRelatedTo().getId()); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:66: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:21:56 pixels1.setRelatedTo(pixels2); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:68: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:21:56 Pixels pixels = pixels1.getRelatedTo(); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:88: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:21:56 Assert.assertNull(pixels1.getRelatedTo()); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:106: warning: [deprecation] setRelatedTo(Pixels) in Pixels has been deprecated 01:21:56 pixels1.setRelatedTo(pixels2); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:108: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:21:56 Pixels pixels = pixels1.getRelatedTo(); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RelatedToTest.java:128: warning: [deprecation] getRelatedTo() in Pixels has been deprecated 01:21:56 Assert.assertNull(pixels1.getRelatedTo()); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:113: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:147: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:56 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:186: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:56 List<Annotation> l = svc.getRoiMeasurements(image.getId().getValue(), 01:21:56 ^ 01:21:56 /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/test/integration/delete/RoiDeleteTest.java:221: warning: [deprecation] getRoiMeasurements(long,RoiOptions) in IRoiPrx has been deprecated 01:21:56 l = svc.getRoiMeasurements(image.getId().getValue(), options); 01:21:56 ^ 01:21:56 Note: Some input files use unchecked or unsafe operations. 01:21:56 Note: Recompile with -Xlint:unchecked for details. 01:21:56 91 warnings 01:21:56 Deleting: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/_omero_build_1627474715.tmp 01:21:56 Building jar: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.jar 01:21:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:21:57 :: delivering :: omero#OmeroJava-test;working@5037f1a69d97 :: 5.6.3-614-46d99bded2-ice36-b5 :: integration :: Fri Jul 10 01:21:40 UTC 2026 01:21:57 delivering ivy file to /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/OmeroJava-test.xml 01:21:57 :: publishing :: omero#OmeroJava-test 01:21:57 published OmeroJava-test to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-46d99bded2-ice36-b5.jar 01:21:57 published ivy to /home/omero/workspace/OMERO-build/src/target/test-repository/OmeroJava-test-5.6.3-614-46d99bded2-ice36-b5.xml 01:21:57 01:21:57 build-eclipse: 01:21:57 No sub-builds to iterate on 01:21:57 Entering /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava... 01:21:57 01:21:57 retrieve: 01:21:57 :: Apache Ivy 2.4.0 - 20141213170938 :: http://ant.apache.org/ivy/ :: 01:21:57 :: loading settings :: file = /home/omero/workspace/OMERO-build/src/etc/ivysettings.xml 01:22:02 01:22:02 prepare: 01:22:02 Preparing: /home/omero/workspace/OMERO-build/src/components/tools/OmeroJava/target/libs 01:22:06 01:22:06 release-clients: 01:22:06 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.java-5.6.3-614-46d99bded2-ice36-b5.zip 01:22:12 01:22:12 release-zip: 01:22:12 Building zip: /home/omero/workspace/OMERO-build/src/target/OMERO.server-5.6.3-614-46d99bded2-ice36-b5.zip 01:22:24 01:22:24 BUILD SUCCESSFUL 01:22:24 Total time: 3 minutes 13 seconds 01:22:24 ++ '[' -d .git ']' 01:22:24 ++ python3 ./build.py release-src 01:22:24 Buildfile: /home/omero/workspace/OMERO-build/src/build.xml 01:22:25 01:22:25 release-src-git: 01:22:25 Releasing openmicroscopy-5.6.3-614-46d99bded2-ice36-b5 01:22:27 - creating /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-46d99bded2-ice36-b5.zip 01:22:27 - repacking /home/omero/workspace/OMERO-build/src/target/openmicroscopy-5.6.3-614-46d99bded2-ice36-b5-base.zip 01:22:28 01:22:28 BUILD SUCCESSFUL 01:22:28 Total time: 4 seconds 01:22:28 ++ echo BUILD_NUMBER=5 01:22:28 ++ echo OMERO_BRANCH=merge_ci 01:22:28 ++ git_info 01:22:28 +++ git rev-parse HEAD 01:22:28 ++ HEAD=46d99bded239515ad66c1cf748504c5126ef857a 01:22:28 ++ git log --max-count=1 46d99bded239515ad66c1cf748504c5126ef857a 01:22:28 ++ env 01:22:28 ++ sort 01:22:28 Archiving artifacts 01:22:45 Finished: SUCCESS