Started by upstream project "Trigger" build number 148 originally caused by: Started by user devspace Restarted from build #147, stage OMERO Python [Pipeline] Start of Pipeline [Pipeline] node Running on testintegration in /home/omero/workspace/OMERO-plugins-push [Pipeline] { [Pipeline] library Loading library recursiveMerge@pip-fix Attempting to resolve pip-fix from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/pwalczysko/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/pip-fix revision 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef Selected Git installation does not exist. Using Default The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/c2fa22709d21f4bfd9941790ca08af5c59149c9caf5c1a8a7319c933eafe9bde/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/pwalczysko/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/pwalczysko/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/pwalczysko/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef (pip-fix) > git config core.sparsecheckout # timeout=10 > git checkout -f 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef # timeout=10 Commit message: "Fix pip-install" > git rev-list --no-walk 7f97700354c96f09f8fc85e1e5b29d5f1bc56eef # timeout=10 [Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 > git submodule update --init --recursive figure # timeout=10 [Pipeline] pwd [Pipeline] copyArtifacts Copied 1 artifact from "OMERO-build-push" build number 125 [Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + tar -zxf - + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python -m pip install 'pip @ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70' Collecting pip@ https://files.pythonhosted.org/packages/3f/06/3e4420302363fbb71be3c7f35ce042f54bfca330e3e66b3a2e3c4cca579f/pip-26.2.2-py3-none-any.whl#sha256=fd7f4dfa8190e014013b9f08f3e973f4e4c26ffd179a204895533a7254813a70 Using cached pip-26.2.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 24.0 Uninstalling pip-24.0: Successfully uninstalled pip-24.0 Successfully installed pip-26.2.2 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + python -m pip install --upgrade certifi Collecting certifi Using cached certifi-2026.10.23-py3-none-any.whl.metadata (2.5 kB) Using cached certifi-2026.10.23-py3-none-any.whl (135 kB) Installing collected packages: certifi Successfully installed certifi-2026.10.23 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.4 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.12-py3-none-any.whl.metadata (9.7 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (46 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Requirement already satisfied: certifi>=2023.5.7 in ./build/venv/lib/python3.11/site-packages (from requests>=2.14.0->PyGithub>=1.54->scc) (2026.10.23) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.2-cp311-abi3-manylinux_2_34_x86_64.whl (4.8 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (269 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.12-py3-none-any.whl (62 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 cffi-2.1.1 charset_normalizer-3.5.2 cryptography-50.0.2 future-1.0.0 idna-3.20 pycparser-3.12 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 [notice] A new release of pip is available: 26.2.2 -> 26.3 [notice] To update, run: pip install --upgrade pip [Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-11-13 07:28:20,457 [ scc.config] DEBUG Found github.token 2026-11-13 07:28:20,459 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-11-13 07:28:20,758 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:21,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:21,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-11-13 07:28:21,699 [ scc.gh] DEBUG 4676 remaining from 5000 (Reset at 08:11 2026-11-13 07:28:21,699 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:28:21,708 [ scc.git] DEBUG Check current status 2026-11-13 07:28:21,708 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:28:21,733 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-11-13 07:28:21,734 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:28:21,984 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-13 07:28:22,065 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-13 07:28:22,118 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-13 07:28:22,166 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-13 07:28:22,207 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-13 07:28:22,294 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-11-13 07:28:22,337 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-13 07:28:22,383 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-13 07:28:22,507 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-11-13 07:28:22,553 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-13 07:28:22,610 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-13 07:28:22,668 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-13 07:28:22,709 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-13 07:28:22,776 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-13 07:28:22,830 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-13 07:28:22,882 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-13 07:28:22,929 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-13 07:28:22,987 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-13 07:28:23,036 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-13 07:28:23,080 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-13 07:28:23,142 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-13 07:28:23,188 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-13 07:28:23,235 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-11-13 07:28:23,256 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:28:23,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-11-13 07:28:24,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:28:24,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:28:25,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:28:25,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:28:25,553 [ scc.git] DEBUG Resetting... 2026-11-13 07:28:25,553 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-11-13 07:28:25,997 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-11-13 07:28:25,998 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-11-13 07:28:27,205 [ scc.git] DEBUG Check current status 2026-11-13 07:28:27,206 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:28:27,231 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-11-13 07:28:27,232 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:28:27,443 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-13 07:28:27,530 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-13 07:28:27,564 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-13 07:28:27,594 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-13 07:28:27,633 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-13 07:28:27,695 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-11-13 07:28:27,733 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-13 07:28:27,767 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-13 07:28:27,851 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-11-13 07:28:27,894 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-13 07:28:27,936 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-13 07:28:27,965 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-13 07:28:27,999 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-13 07:28:28,038 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-13 07:28:28,080 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-13 07:28:28,127 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-13 07:28:28,174 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-13 07:28:28,225 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-13 07:28:28,269 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-13 07:28:28,330 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-13 07:28:28,368 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-13 07:28:28,407 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-13 07:28:28,439 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-11-13 07:28:28,440 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-11-13 07:28:28,440 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-11-13 07:28:28,440 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-11-13 07:28:28,440 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-11-13 07:28:28,440 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-11-13 07:28:28,440 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:28:28,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-11-13 07:28:29,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/435 HTTP/1.1" 200 None 2026-11-13 07:28:29,468 [ scc.repo] DEBUG - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-13 07:28:30,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-11-13 07:28:30,000 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:28:30,000 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-13 07:28:30,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-11-13 07:28:30,530 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:28:30,530 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-13 07:28:31,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-11-13 07:28:31,107 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:28:31,107 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-13 07:28:31,107 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:28:31,107 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:28:31,107 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:31,118 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:28:31,131 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:28:31,131 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:28:31,149 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:28:31,196 [ scc.git] DEBUG Already up to date. 2026-11-13 07:28:31,196 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-11-13 07:28:31,654 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:28:31,654 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-11-13 07:28:31,695 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-11-13 07:28:32,122 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:28:32,122 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-11-13 07:28:32,147 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-11-13 07:28:32,570 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:28:32,570 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-11-13 07:28:32,601 [ scc.git] DEBUG Calling 'git fetch origin pull/435/head' 2026-11-13 07:28:33,162 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:28:33,162 [ scc.git] DEBUG * branch refs/pull/435/head -> FETCH_HEAD 2026-11-13 07:28:33,197 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:28:33,197 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:28:33,197 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:33,210 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-13 07:28:33,233 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:33,242 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-13 07:28:33,978 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:28:34,036 [ scc.git] DEBUG scripts | 2 +- 2026-11-13 07:28:34,036 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:28:34,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:34,280 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-13 07:28:34,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:34,320 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-13 07:28:35,033 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:28:35,093 [ scc.git] DEBUG omero-figure | 2 +- 2026-11-13 07:28:35,093 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:28:35,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:35,321 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-13 07:28:35,347 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:35,356 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-13 07:28:36,050 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:28:36,106 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-11-13 07:28:36,106 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:28:36,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:36,311 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-13 07:28:36,344 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:36,352 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 435 (Add omero-biofilefinder as a submodule) d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-13 07:28:37,039 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:28:37,103 [ scc.git] DEBUG .gitmodules | 3 +++ 2026-11-13 07:28:37,104 [ scc.git] DEBUG omero-biofilefinder | 1 + 2026-11-13 07:28:37,104 [ scc.git] DEBUG 2 files changed, 4 insertions(+) 2026-11-13 07:28:37,104 [ scc.git] DEBUG create mode 160000 omero-biofilefinder 2026-11-13 07:28:37,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:28:37,336 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:28:38,640 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-11-13 07:28:40,041 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-11-13 07:28:40,448 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-11-13 07:28:40,449 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:28:40,449 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:28:40,460 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:28:44,473 [ scc.git] DEBUG has no local changes 2026-11-13 07:28:44,473 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' - PR 435 will-moore 'Add omero-biofilefinder as a submodule' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:28:45,859 [ scc.git] DEBUG [detached HEAD 7f591f9] merge master -Dorg -Snone 2026-11-13 07:28:45,861 [ scc.merge] INFO Repository: ome/omero-plugins 2026-11-13 07:28:45,861 [ scc.merge] INFO Already up to date. 2026-11-13 07:28:45,861 [ scc.merge] INFO 2026-11-13 07:28:45,861 [ scc.merge] INFO Merged PRs: 2026-11-13 07:28:45,861 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-13 07:28:45,861 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-13 07:28:45,861 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-13 07:28:45,861 [ scc.merge] INFO - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-13 07:28:45,861 [ scc.merge] INFO 2026-11-13 07:28:45,861 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-11-13 07:28:45,861 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'figure': checked out '48591c091ba1f149565893668c0f3d1fd2609d06' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '106ca78705971983e6312360c46c4b41f4bf39d7' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-signup': checked out '5a643604069047aa316f490d1a0b5adba78b079e' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '636540edd446910373ee2f91100356497e205722' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-11-13 07:29:08,205 [ scc.config] DEBUG Found github.token 2026-11-13 07:29:08,208 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-11-13 07:29:09,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:29:10,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:29:10,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-11-13 07:29:10,558 [ scc.gh] DEBUG 4660 remaining from 5000 (Reset at 08:11 2026-11-13 07:29:10,559 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:10,568 [ scc.git] DEBUG Check current status 2026-11-13 07:29:10,568 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:10,589 [ scc.git] DEBUG 7f591f9 merge master -Dorg -Snone 2026-11-13 07:29:10,590 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:10,802 [ scc.git] DEBUG +48591c091ba1f149565893668c0f3d1fd2609d06 figure (remotes/origin/HEAD) 2026-11-13 07:29:10,888 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-13 07:29:10,888 [ scc.git] DEBUG -a686ad88b3f5e2a1f94b1e1eb765138a8dfdf555 omero-biofilefinder 2026-11-13 07:29:10,945 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-13 07:29:10,999 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-11-13 07:29:11,052 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-11-13 07:29:11,137 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-11-13 07:29:11,188 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-13 07:29:11,232 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-13 07:29:11,358 [ scc.git] DEBUG +106ca78705971983e6312360c46c4b41f4bf39d7 omero-iviewer (v0.20.0-1-g106ca787) 2026-11-13 07:29:11,437 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-13 07:29:11,491 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-11-13 07:29:11,536 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-13 07:29:11,575 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-13 07:29:11,613 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-11-13 07:29:11,655 [ scc.git] DEBUG +5a643604069047aa316f490d1a0b5adba78b079e omero-signup (v0.3.3-12-g5a64360) 2026-11-13 07:29:11,689 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-11-13 07:29:11,720 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-13 07:29:11,751 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-11-13 07:29:11,782 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-11-13 07:29:11,816 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-13 07:29:11,848 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-13 07:29:11,879 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-13 07:29:11,925 [ scc.git] DEBUG +636540edd446910373ee2f91100356497e205722 scripts (v5.10.0-14-g636540e) 2026-11-13 07:29:11,941 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:11,941 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-11-13 07:29:11,945 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-11-13 07:29:12,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-11-13 07:29:12,939 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:13,464 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:13,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:14,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:14,444 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:14,675 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-13 07:29:14,676 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:14,687 [ scc.git] DEBUG Check current status 2026-11-13 07:29:14,687 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:14,716 [ scc.git] DEBUG 48591c0 Merge pull request #5 from will-moore/figure_json_from_gist 2026-11-13 07:29:14,717 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:14,856 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:15,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-11-13 07:29:15,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:16,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:16,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:17,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:17,295 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:17,431 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:17,432 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-13 07:29:17,432 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:17,443 [ scc.git] DEBUG Check current status 2026-11-13 07:29:17,443 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:17,462 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-11-13 07:29:17,463 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:17,595 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:18,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-11-13 07:29:18,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:19,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:19,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:20,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:20,054 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:20,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:20,185 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-13 07:29:20,186 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:20,197 [ scc.git] DEBUG Check current status 2026-11-13 07:29:20,197 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:20,217 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-11-13 07:29:20,218 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:20,359 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:20,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-11-13 07:29:21,291 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:21,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:22,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:22,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:22,860 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:22,977 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:22,978 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-13 07:29:22,978 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:22,990 [ scc.git] DEBUG Check current status 2026-11-13 07:29:22,990 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:23,010 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-11-13 07:29:23,012 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:23,169 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:23,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-11-13 07:29:24,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:24,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:25,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:25,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:25,545 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:25,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:25,707 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-13 07:29:25,708 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:25,723 [ scc.git] DEBUG Check current status 2026-11-13 07:29:25,723 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:25,750 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-13 07:29:25,751 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:25,931 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:26,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-11-13 07:29:26,915 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:27,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:27,888 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:28,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:28,434 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:28,611 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:28,612 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-13 07:29:28,612 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:28,653 [ scc.git] DEBUG Check current status 2026-11-13 07:29:28,653 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:28,687 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-11-13 07:29:28,692 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:28,826 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:29,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-11-13 07:29:29,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:30,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:30,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:31,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:31,323 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:31,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:31,458 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-13 07:29:31,459 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:31,475 [ scc.git] DEBUG Check current status 2026-11-13 07:29:31,475 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:31,499 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-11-13 07:29:31,500 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:31,649 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:32,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-11-13 07:29:32,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:33,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:33,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:34,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:34,219 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:34,384 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:34,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-13 07:29:34,385 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:34,396 [ scc.git] DEBUG Check current status 2026-11-13 07:29:34,396 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:34,415 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-11-13 07:29:34,416 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:34,552 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:34,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-11-13 07:29:35,532 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:36,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:36,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:37,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:37,005 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:37,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:37,129 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-13 07:29:37,130 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:37,144 [ scc.git] DEBUG Check current status 2026-11-13 07:29:37,144 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:37,175 [ scc.git] DEBUG 106ca787 add dev 2026-11-13 07:29:37,181 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:37,314 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:37,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-11-13 07:29:38,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:38,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:39,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:39,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:39,928 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:40,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:40,093 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-13 07:29:40,094 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:40,116 [ scc.git] DEBUG Check current status 2026-11-13 07:29:40,116 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:40,153 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-11-13 07:29:40,158 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:40,341 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:40,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-11-13 07:29:41,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:41,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:42,315 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:42,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:42,815 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:42,954 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:42,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-13 07:29:42,955 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:42,974 [ scc.git] DEBUG Check current status 2026-11-13 07:29:42,974 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:43,005 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-11-13 07:29:43,006 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:43,159 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:43,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-11-13 07:29:44,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:44,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:45,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:45,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:45,561 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:45,684 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:45,685 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-13 07:29:45,685 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:45,725 [ scc.git] DEBUG Check current status 2026-11-13 07:29:45,725 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:45,748 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-11-13 07:29:45,749 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:45,910 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:46,264 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-11-13 07:29:47,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:47,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:47,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:48,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:48,471 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:48,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:48,607 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-13 07:29:48,608 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:48,620 [ scc.git] DEBUG Check current status 2026-11-13 07:29:48,620 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:48,648 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-11-13 07:29:48,649 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:48,785 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:49,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-11-13 07:29:49,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:50,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:50,819 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:51,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:51,309 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:51,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:51,443 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-13 07:29:51,444 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:51,456 [ scc.git] DEBUG Check current status 2026-11-13 07:29:51,456 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:51,476 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-11-13 07:29:51,477 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:51,606 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:52,211 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-11-13 07:29:52,772 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:53,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:53,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:54,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:54,209 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:54,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:54,348 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-13 07:29:54,349 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:54,367 [ scc.git] DEBUG Check current status 2026-11-13 07:29:54,367 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:54,398 [ scc.git] DEBUG 5a64360 Merge pull request #24 from pwalczysko/master 2026-11-13 07:29:54,399 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:54,562 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:54,987 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-11-13 07:29:55,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:56,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:56,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:56,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:56,976 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:29:57,115 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:29:57,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-13 07:29:57,117 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:29:57,133 [ scc.git] DEBUG Check current status 2026-11-13 07:29:57,133 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:29:57,163 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-11-13 07:29:57,164 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:29:57,318 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:29:57,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-13 07:29:57,599 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-13 07:29:57,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-11-13 07:29:58,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:29:59,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:29:59,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:29:59,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:29:59,997 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:00,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:00,127 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-13 07:30:00,128 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:00,142 [ scc.git] DEBUG Check current status 2026-11-13 07:30:00,142 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:00,164 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-11-13 07:30:00,165 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:00,309 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:00,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-11-13 07:30:01,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:01,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:02,331 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:02,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:02,880 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:03,016 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:03,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-13 07:30:03,017 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:03,030 [ scc.git] DEBUG Check current status 2026-11-13 07:30:03,030 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:03,051 [ scc.git] DEBUG 160d894 Fix display of code 2026-11-13 07:30:03,052 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:03,184 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:03,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-11-13 07:30:04,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:04,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:05,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:05,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:05,662 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:05,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:05,788 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-13 07:30:05,788 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:05,809 [ scc.git] DEBUG Check current status 2026-11-13 07:30:05,809 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:05,835 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-11-13 07:30:05,836 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:05,992 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:05,992 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-11-13 07:30:06,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-11-13 07:30:07,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:07,526 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:08,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:08,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:08,508 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:08,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:08,647 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-13 07:30:08,648 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:08,663 [ scc.git] DEBUG Check current status 2026-11-13 07:30:08,663 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:08,687 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-11-13 07:30:08,689 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:08,868 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:09,115 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-13 07:30:09,115 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-13 07:30:09,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-11-13 07:30:10,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:10,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:11,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:11,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:11,955 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:12,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:12,082 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-13 07:30:12,082 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:12,095 [ scc.git] DEBUG Check current status 2026-11-13 07:30:12,095 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:12,117 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-11-13 07:30:12,117 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:12,265 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:12,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-13 07:30:12,497 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-13 07:30:12,885 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-11-13 07:30:13,568 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:14,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:14,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:15,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:15,193 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:15,316 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:15,316 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-13 07:30:15,317 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:15,330 [ scc.git] DEBUG Check current status 2026-11-13 07:30:15,330 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:15,351 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-11-13 07:30:15,353 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:15,479 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:15,994 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-11-13 07:30:16,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:17,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:17,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:18,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:18,011 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:18,140 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:18,141 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-13 07:30:18,141 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-11-13 07:30:18,188 [ scc.git] DEBUG Check current status 2026-11-13 07:30:18,188 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:18,217 [ scc.git] DEBUG 636540e Merge pull request #235 from will-moore/batch_roi_export_tags 2026-11-13 07:30:18,218 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:18,345 [ scc.config] DEBUG Found remote.origin.url 2026-11-13 07:30:18,345 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-11-13 07:30:18,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-13 07:30:18,568 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-13 07:30:19,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-11-13 07:30:19,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-11-13 07:30:20,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-11-13 07:30:20,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-11-13 07:30:21,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-11-13 07:30:21,125 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:30:21,259 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:30:21,259 [ scc.git] DEBUG Resetting... 2026-11-13 07:30:21,259 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-11-13 07:30:21,716 [ scc.git] DEBUG HEAD is now at 7f591f9 merge master -Dorg -Snone 2026-11-13 07:30:21,718 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-11-13 07:30:22,464 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-11-13 07:30:22,821 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-11-13 07:30:23,439 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-11-13 07:30:24,949 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-11-13 07:30:26,476 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-11-13 07:30:26,959 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-11-13 07:30:27,438 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-11-13 07:30:27,728 [ scc.git] DEBUG Submodule path 'omero-signup': checked out 'be76813540a02082196cac2ffee151e3f68cb71e' 2026-11-13 07:30:27,957 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-11-13 07:30:28,253 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-11-13 07:30:28,453 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-11-13 07:30:29,008 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-11-13 07:30:29,039 [ scc.git] DEBUG Check current status 2026-11-13 07:30:29,040 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-11-13 07:30:29,065 [ scc.git] DEBUG 7f591f9 merge master -Dorg -Snone 2026-11-13 07:30:29,066 [ scc.git] DEBUG Calling 'git submodule status' 2026-11-13 07:30:29,330 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-11-13 07:30:29,444 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-11-13 07:30:29,444 [ scc.git] DEBUG -a686ad88b3f5e2a1f94b1e1eb765138a8dfdf555 omero-biofilefinder 2026-11-13 07:30:29,498 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-11-13 07:30:29,552 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-11-13 07:30:29,613 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-11-13 07:30:29,708 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-11-13 07:30:29,758 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-11-13 07:30:29,795 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-11-13 07:30:29,895 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-11-13 07:30:29,926 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-11-13 07:30:29,973 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-11-13 07:30:30,013 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-11-13 07:30:30,045 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-11-13 07:30:30,083 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-11-13 07:30:30,116 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-11-13 07:30:30,148 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-11-13 07:30:30,186 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-11-13 07:30:30,221 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-11-13 07:30:30,254 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-11-13 07:30:30,291 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-11-13 07:30:30,323 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-11-13 07:30:30,355 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-11-13 07:30:30,379 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-11-13 07:30:30,380 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-11-13 07:30:30,380 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-11-13 07:30:30,380 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-11-13 07:30:30,380 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-11-13 07:30:30,380 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-11-13 07:30:30,380 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-11-13 07:30:30,380 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:30:30,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-11-13 07:30:31,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/435 HTTP/1.1" 200 None 2026-11-13 07:30:32,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:32,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:33,497 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/d7acd12290d8278e426d4200ae8e4648ff9b95b3?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:33,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/d7acd12290d8278e426d4200ae8e4648ff9b95b3?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:30:33,985 [ scc.repo] DEBUG - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-13 07:30:34,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-11-13 07:30:34,522 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:30:35,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:36,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:36,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:37,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:30:37,228 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-13 07:30:37,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-11-13 07:30:37,916 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:30:38,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:39,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:39,662 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:40,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:30:40,129 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-13 07:30:40,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-11-13 07:30:40,720 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:30:41,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:41,919 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:42,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:43,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:30:43,214 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-13 07:30:43,214 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:30:43,214 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:30:43,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:43,225 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:30:43,242 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:30:43,242 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:30:43,270 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:30:43,327 [ scc.git] DEBUG Already up to date. 2026-11-13 07:30:43,327 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-11-13 07:30:43,770 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:30:43,770 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-11-13 07:30:43,801 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-11-13 07:30:44,253 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:30:44,253 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-11-13 07:30:44,304 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-11-13 07:30:44,881 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:30:44,881 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-11-13 07:30:44,917 [ scc.git] DEBUG Calling 'git fetch origin pull/435/head' 2026-11-13 07:30:45,637 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-11-13 07:30:45,638 [ scc.git] DEBUG * branch refs/pull/435/head -> FETCH_HEAD 2026-11-13 07:30:45,682 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:30:45,682 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:30:45,682 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:45,698 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-13 07:30:45,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:45,750 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-11-13 07:30:45,828 [ scc.git] DEBUG Already up to date. 2026-11-13 07:30:46,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:30:46,047 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-13 07:30:46,077 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:46,087 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-11-13 07:30:46,146 [ scc.git] DEBUG Already up to date. 2026-11-13 07:30:46,479 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:30:46,479 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-13 07:30:46,510 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:46,521 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-11-13 07:30:46,572 [ scc.git] DEBUG Already up to date. 2026-11-13 07:30:46,930 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:30:46,931 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-13 07:30:46,982 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:46,996 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 435 (Add omero-biofilefinder as a submodule) d7acd12290d8278e426d4200ae8e4648ff9b95b3' 2026-11-13 07:30:47,059 [ scc.git] DEBUG Already up to date. 2026-11-13 07:30:47,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:30:47,409 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:30:48,218 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:30:48,218 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:30:48,228 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:30:48,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-11-13 07:30:49,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/30 HTTP/1.1" 200 None 2026-11-13 07:30:49,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/30/comments HTTP/1.1" 200 None 2026-11-13 07:30:50,519 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:51,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:51,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:52,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/7b316828909e365b9a7492c56187be32a6e0d7f8?per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:52,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:53,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/7b316828909e365b9a7492c56187be32a6e0d7f8/status HTTP/1.1" 200 None 2026-11-13 07:30:53,239 [ scc.repo] DEBUG - PR 30 will-moore 'License to BSD' 2026-11-13 07:30:53,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/26 HTTP/1.1" 200 None 2026-11-13 07:30:54,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/26/comments HTTP/1.1" 200 None 2026-11-13 07:30:54,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:55,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:55,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:56,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8?per_page=1 HTTP/1.1" 200 None 2026-11-13 07:30:56,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:57,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/d5b2b262d5fcf826dafc80acd262bf4ce2f252c8/status HTTP/1.1" 200 None 2026-11-13 07:30:57,487 [ scc.repo] DEBUG - PR 26 will-moore 'Remove python script' 2026-11-13 07:30:58,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21 HTTP/1.1" 200 None 2026-11-13 07:30:58,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/21/comments HTTP/1.1" 200 None 2026-11-13 07:30:58,719 [ scc.repo] DEBUG # ... Include label: include 2026-11-13 07:30:59,362 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-13 07:30:59,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:00,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:01,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/2ee7ef68e92851305e84f793e1301b6a97fc7200?per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:01,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:02,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/2ee7ef68e92851305e84f793e1301b6a97fc7200/status HTTP/1.1" 200 None 2026-11-13 07:31:02,200 [ scc.repo] DEBUG - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-11-13 07:31:02,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-11-13 07:31:03,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-11-13 07:31:03,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-11-13 07:31:04,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-11-13 07:31:04,505 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:31:04,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-13 07:31:04,505 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:04,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:04,521 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:31:04,541 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:31:04,541 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:31:04,641 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:31:05,400 [ scc.git] DEBUG Updating 3935875..48591c0 2026-11-13 07:31:05,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/5 HTTP/1.1" 200 16141 2026-11-13 07:31:06,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/24 HTTP/1.1" 200 16693 2026-11-13 07:31:07,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/20 HTTP/1.1" 200 17267 2026-11-13 07:31:07,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/19 HTTP/1.1" 200 16495 2026-11-13 07:31:08,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 16531 2026-11-13 07:31:08,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 16256 2026-11-13 07:31:09,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 16506 2026-11-13 07:31:09,583 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-11-13 07:31:10,190 [ scc.git] DEBUG From https://github.com/ome/figure 2026-11-13 07:31:10,190 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-11-13 07:31:10,218 [ scc.git] DEBUG Calling 'git fetch origin pull/26/head' 2026-11-13 07:31:10,716 [ scc.git] DEBUG From https://github.com/ome/figure 2026-11-13 07:31:10,716 [ scc.git] DEBUG * branch refs/pull/26/head -> FETCH_HEAD 2026-11-13 07:31:10,740 [ scc.git] DEBUG Calling 'git fetch origin pull/30/head' 2026-11-13 07:31:11,275 [ scc.git] DEBUG From https://github.com/ome/figure 2026-11-13 07:31:11,275 [ scc.git] DEBUG * branch refs/pull/30/head -> FETCH_HEAD 2026-11-13 07:31:11,299 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:31:11,299 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:11,299 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:11,312 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-11-13 07:31:11,391 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:11,407 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`) 2ee7ef68e92851305e84f793e1301b6a97fc7200' 2026-11-13 07:31:11,826 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:31:11,896 [ scc.git] DEBUG src/js/views/util.js | 24 +++++++++++++----------- 2026-11-13 07:31:11,896 [ scc.git] DEBUG 1 file changed, 13 insertions(+), 11 deletions(-) 2026-11-13 07:31:12,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:31:12,117 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d5b2b262d5fcf826dafc80acd262bf4ce2f252c8' 2026-11-13 07:31:12,219 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:12,233 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 26 (Remove python script) d5b2b262d5fcf826dafc80acd262bf4ce2f252c8' 2026-11-13 07:31:12,468 [ scc.git] DEBUG Auto-merging README.md 2026-11-13 07:31:12,523 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:31:12,605 [ scc.git] DEBUG .bumpversion.cfg | 2 - 2026-11-13 07:31:12,605 [ scc.git] DEBUG README.md | 15 +- 2026-11-13 07:31:12,605 [ scc.git] DEBUG cli.py | 62 - 2026-11-13 07:31:12,605 [ scc.git] DEBUG ome_figure/Figure_To_Pdf.py | 3564 --------------------------- 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/__init__.py | 0 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/B24.pbm | Bin 8441 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/B24.pil | Bin 5143 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/FreeSans.ttf | Bin 568896 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/FreeSansBold.ttf | Bin 359272 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/FreeSansBoldOblique.ttf | Bin 301188 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG ome_figure/pilfonts/FreeSansOblique.ttf | Bin 441432 -> 0 bytes 2026-11-13 07:31:12,606 [ scc.git] DEBUG pyproject.toml | 25 - 2026-11-13 07:31:12,606 [ scc.git] DEBUG 12 files changed, 1 insertion(+), 3667 deletions(-) 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 cli.py 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 ome_figure/Figure_To_Pdf.py 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 ome_figure/__init__.py 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 ome_figure/pilfonts/B24.pbm 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 ome_figure/pilfonts/B24.pil 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 ome_figure/pilfonts/FreeSans.ttf 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100755 ome_figure/pilfonts/FreeSansBold.ttf 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100755 ome_figure/pilfonts/FreeSansBoldOblique.ttf 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100755 ome_figure/pilfonts/FreeSansOblique.ttf 2026-11-13 07:31:12,606 [ scc.git] DEBUG delete mode 100644 pyproject.toml 2026-11-13 07:31:12,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:31:12,864 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...7b316828909e365b9a7492c56187be32a6e0d7f8' 2026-11-13 07:31:12,957 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:12,979 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 30 (License to BSD) 7b316828909e365b9a7492c56187be32a6e0d7f8' 2026-11-13 07:31:13,246 [ scc.git] DEBUG Auto-merging README.md 2026-11-13 07:31:13,300 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:31:13,370 [ scc.git] DEBUG LICENSE | 686 +++----------------------------------------------------------- 2026-11-13 07:31:13,370 [ scc.git] DEBUG README.md | 3 +- 2026-11-13 07:31:13,370 [ scc.git] DEBUG 2 files changed, 27 insertions(+), 662 deletions(-) 2026-11-13 07:31:13,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:31:13,559 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:31:13,716 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:13,716 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:13,732 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:31:13,846 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:31:13,919 [ scc.git] DEBUG has no local changes 2026-11-13 07:31:13,919 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (exclude comment) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..48591c0 Previously merged: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 24 Tom-TBT 'Label selection timeout & blur fix' - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' - PR 26 will-moore 'Remove python script' - PR 30 will-moore 'License to BSD' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:31:14,109 [ scc.git] DEBUG [detached HEAD 14479cb] merge master -Dorg -Ssuccess-only 2026-11-13 07:31:14,111 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:31:14,111 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:31:14,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-11-13 07:31:14,432 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:31:14,432 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-13 07:31:14,432 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:14,432 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:14,448 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:31:14,465 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:31:14,465 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:31:14,482 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:31:14,534 [ scc.git] DEBUG Already up to date. 2026-11-13 07:31:14,534 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:31:14,534 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:14,534 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:14,548 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:31:14,675 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:14,675 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:14,687 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:31:14,805 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:31:14,854 [ scc.git] DEBUG has no local changes 2026-11-13 07:31:14,854 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:31:15,001 [ scc.git] DEBUG [detached HEAD 3ae2c57] merge master -Dorg -Ssuccess-only 2026-11-13 07:31:15,002 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:31:15,002 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:31:15,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-11-13 07:31:16,224 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-11-13 07:31:16,224 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:31:16,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:17,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:18,014 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:18,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:31:18,474 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:31:19,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-11-13 07:31:19,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-11-13 07:31:19,594 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:31:19,594 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-13 07:31:19,594 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:19,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:19,611 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:31:19,627 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:31:19,627 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:31:19,645 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:31:19,689 [ scc.git] DEBUG Already up to date. 2026-11-13 07:31:19,689 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-11-13 07:31:20,112 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-11-13 07:31:20,112 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-11-13 07:31:20,135 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:31:20,135 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:20,135 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:20,147 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-11-13 07:31:20,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:20,177 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-11-13 07:31:20,346 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:31:20,411 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:31:20,411 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:31:20,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:31:20,660 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:31:20,787 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:20,787 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:20,798 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:31:20,918 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:31:20,965 [ scc.git] DEBUG has no local changes 2026-11-13 07:31:20,965 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:31:21,155 [ scc.git] DEBUG [detached HEAD 1a1cbc9] merge master -Dorg -Ssuccess-only 2026-11-13 07:31:21,157 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:31:21,157 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:31:21,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-11-13 07:31:22,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-11-13 07:31:22,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-11-13 07:31:23,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:24,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:24,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:31:25,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:25,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:31:25,654 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-11-13 07:31:26,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-11-13 07:31:26,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-11-13 07:31:26,939 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:31:26,939 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-13 07:31:26,940 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:26,940 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:26,955 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:31:26,972 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:31:26,972 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:31:27,000 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:31:27,164 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-11-13 07:31:28,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 16725 2026-11-13 07:31:29,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 16780 2026-11-13 07:31:29,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 17096 2026-11-13 07:31:30,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 18082 2026-11-13 07:31:30,358 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-11-13 07:31:31,080 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-11-13 07:31:31,081 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-11-13 07:31:31,103 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:31:31,104 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:31,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:31,123 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-11-13 07:31:31,167 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:31,184 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-11-13 07:31:31,344 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-11-13 07:31:31,436 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:31:31,490 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-11-13 07:31:31,490 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-11-13 07:31:31,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:31:31,695 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:31:31,822 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:31,822 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:31,833 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:31:31,950 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:31:32,005 [ scc.git] DEBUG has no local changes 2026-11-13 07:31:32,005 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:31:32,137 [ scc.git] DEBUG [detached HEAD b82d057] merge master -Dorg -Ssuccess-only 2026-11-13 07:31:32,138 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:31:32,139 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:31:32,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-11-13 07:31:33,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-11-13 07:31:33,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-11-13 07:31:34,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:35,020 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:35,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:31:36,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:36,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:37,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:37,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-11-13 07:31:37,680 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-11-13 07:31:38,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-11-13 07:31:38,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-11-13 07:31:39,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:40,063 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:40,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:41,467 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-11-13 07:31:42,046 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-11-13 07:31:42,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-11-13 07:31:42,610 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-11-13 07:31:43,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-11-13 07:31:43,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-11-13 07:31:44,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-11-13 07:31:44,841 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-11-13 07:31:45,488 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-11-13 07:31:45,490 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:31:45,491 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-13 07:31:45,491 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:45,491 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:45,516 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:31:45,543 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:31:45,543 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:31:45,653 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:31:46,109 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-11-13 07:31:46,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 16931 2026-11-13 07:31:47,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 16893 2026-11-13 07:31:47,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 16806 2026-11-13 07:31:48,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 17329 2026-11-13 07:31:48,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 20503 2026-11-13 07:31:49,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 17178 2026-11-13 07:31:50,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 16738 2026-11-13 07:31:50,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 16632 2026-11-13 07:31:52,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 16753 2026-11-13 07:31:53,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 18000 2026-11-13 07:31:53,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 16699 2026-11-13 07:31:54,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 16625 2026-11-13 07:31:55,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 17020 2026-11-13 07:31:55,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 17911 2026-11-13 07:31:56,329 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 16967 2026-11-13 07:31:56,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 16794 2026-11-13 07:31:57,415 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 16834 2026-11-13 07:31:57,417 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-11-13 07:31:58,389 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-11-13 07:31:58,389 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-11-13 07:31:58,420 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-11-13 07:31:59,118 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-11-13 07:31:59,118 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-11-13 07:31:59,168 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:31:59,168 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:31:59,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:59,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-13 07:31:59,303 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:31:59,324 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging README.rst 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-11-13 07:31:59,870 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-11-13 07:31:59,908 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:31:59,909 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:31:59,966 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-13 07:32:00,222 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-13 07:32:00,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:32:00,457 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-11-13 07:32:00,559 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-13 07:32:00,613 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/raw_pixels.py - src/omero_zarr/util.py - test/integration/clitest/test_export.py - src/omero_zarr/masks.py - src/omero_zarr/cli.py --conflicts 2026-11-13 07:32:00,626 [ scc.config] DEBUG Found github.token 2026-11-13 07:32:00,626 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-11-13 07:32:00,626 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-13 07:32:00,738 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:32:00,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-13 07:32:01,096 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-11-13 07:32:01,096 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-11-13 07:32:01,096 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-11-13 07:32:01,096 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-11-13 07:32:01,118 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:32:01,120 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:32:01,164 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-13 07:32:01,349 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-11-13 07:32:01,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:32:01,577 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-11-13 07:32:01,674 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-11-13 07:32:01,711 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-11-13 07:32:01,724 [ scc.config] DEBUG Found github.token 2026-11-13 07:32:01,724 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-11-13 07:32:01,724 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:32:01,892 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:32:01,892 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:32:01,907 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:32:02,061 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:32:02,141 [ scc.git] DEBUG has no local changes 2026-11-13 07:32:02,141 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:32:02,285 [ scc.git] DEBUG [detached HEAD 2f242ce] merge master -Dorg -Ssuccess-only 2026-11-13 07:32:02,286 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:32:02,287 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:32:02,887 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-11-13 07:32:03,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/715 HTTP/1.1" 200 None 2026-11-13 07:32:04,023 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/715/comments HTTP/1.1" 200 None 2026-11-13 07:32:04,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/714 HTTP/1.1" 200 None 2026-11-13 07:32:04,558 [ scc.repo] DEBUG # ... Include label: include 2026-11-13 07:32:05,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:06,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:32:06,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:32:07,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/4986b38e7c0c9b3a1c7fd869236f734346741155?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:07,548 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/4986b38e7c0c9b3a1c7fd869236f734346741155?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:32:07,549 [ scc.repo] DEBUG - PR 714 Rdornier 'Fix scalebar label' 2026-11-13 07:32:08,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/713 HTTP/1.1" 200 None 2026-11-13 07:32:08,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/713/comments HTTP/1.1" 200 None 2026-11-13 07:32:08,603 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:32:09,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:10,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:32:10,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:32:11,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/383c0e213c0357ff8a4502ef5a50899573132af4?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:11,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/383c0e213c0357ff8a4502ef5a50899573132af4?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:32:11,844 [ scc.repo] DEBUG - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' 2026-11-13 07:32:12,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/712 HTTP/1.1" 200 None 2026-11-13 07:32:12,444 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:32:13,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:14,013 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:32:14,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/71c40c7187ed81dc041307f27b0fdd06efd4ca86/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:32:15,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711 HTTP/1.1" 200 None 2026-11-13 07:32:15,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/711/comments HTTP/1.1" 200 None 2026-11-13 07:32:15,741 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:32:16,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:17,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:32:17,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:32:18,376 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/5affb9919bd08c4de17797109288085f666c6ad4?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:18,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/5affb9919bd08c4de17797109288085f666c6ad4?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:32:18,867 [ scc.repo] DEBUG - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-13 07:32:19,637 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-11-13 07:32:20,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-11-13 07:32:20,821 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:21,386 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:32:21,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:32:22,420 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/bacbdf587bdcadbcd935ba06acb19db42021f067?page=1 HTTP/1.1" 200 None 2026-11-13 07:32:22,883 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/bacbdf587bdcadbcd935ba06acb19db42021f067?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:32:22,884 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-11-13 07:32:22,884 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:32:22,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-13 07:32:22,885 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:32:22,885 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:32:22,908 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:32:22,941 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:32:22,942 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:32:23,109 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:32:24,492 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-11-13 07:32:24,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 16553 2026-11-13 07:32:25,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 16998 2026-11-13 07:32:26,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 17377 2026-11-13 07:32:26,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 17063 2026-11-13 07:32:27,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 17073 2026-11-13 07:32:27,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 23200 2026-11-13 07:32:28,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 27023 2026-11-13 07:32:29,108 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 30159 2026-11-13 07:32:29,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 26129 2026-11-13 07:32:30,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 30412 2026-11-13 07:32:31,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 18972 2026-11-13 07:32:31,645 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 24576 2026-11-13 07:32:32,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 23730 2026-11-13 07:32:32,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 17637 2026-11-13 07:32:33,396 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 17617 2026-11-13 07:32:34,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 17584 2026-11-13 07:32:35,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 17047 2026-11-13 07:32:35,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 17088 2026-11-13 07:32:36,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 27786 2026-11-13 07:32:36,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 17594 2026-11-13 07:32:37,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 21222 2026-11-13 07:32:38,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 17602 2026-11-13 07:32:38,755 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 28197 2026-11-13 07:32:39,303 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 18576 2026-11-13 07:32:39,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 17022 2026-11-13 07:32:40,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 21023 2026-11-13 07:32:40,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 30273 2026-11-13 07:32:41,588 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 26168 2026-11-13 07:32:42,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 20939 2026-11-13 07:32:42,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 17459 2026-11-13 07:32:43,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 20410 2026-11-13 07:32:43,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 19341 2026-11-13 07:32:44,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 19297 2026-11-13 07:32:45,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 32211 2026-11-13 07:32:45,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 19360 2026-11-13 07:32:46,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 20367 2026-11-13 07:32:47,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 18824 2026-11-13 07:32:47,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 17205 2026-11-13 07:32:48,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 17044 2026-11-13 07:32:48,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 17325 2026-11-13 07:32:49,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 19459 2026-11-13 07:32:50,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 20069 2026-11-13 07:32:50,777 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 19258 2026-11-13 07:32:51,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 18459 2026-11-13 07:32:51,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 18000 2026-11-13 07:32:52,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 18672 2026-11-13 07:32:53,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 18404 2026-11-13 07:32:53,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 24935 2026-11-13 07:32:54,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 18472 2026-11-13 07:32:54,757 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 21807 2026-11-13 07:32:55,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 18406 2026-11-13 07:32:55,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 18368 2026-11-13 07:32:56,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 21786 2026-11-13 07:32:58,344 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 19388 2026-11-13 07:32:58,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 27169 2026-11-13 07:32:59,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 43640 2026-11-13 07:33:00,134 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 18346 2026-11-13 07:33:00,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 16918 2026-11-13 07:33:00,873 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-11-13 07:33:01,534 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-13 07:33:01,534 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-11-13 07:33:01,563 [ scc.git] DEBUG Calling 'git fetch origin pull/711/head' 2026-11-13 07:33:02,085 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-13 07:33:02,085 [ scc.git] DEBUG * branch refs/pull/711/head -> FETCH_HEAD 2026-11-13 07:33:02,112 [ scc.git] DEBUG Calling 'git fetch origin pull/713/head' 2026-11-13 07:33:02,609 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-13 07:33:02,609 [ scc.git] DEBUG * branch refs/pull/713/head -> FETCH_HEAD 2026-11-13 07:33:02,633 [ scc.git] DEBUG Calling 'git fetch origin pull/714/head' 2026-11-13 07:33:03,326 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-11-13 07:33:03,326 [ scc.git] DEBUG * branch refs/pull/714/head -> FETCH_HEAD 2026-11-13 07:33:03,356 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:33:03,356 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:03,356 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| 8 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 -- 2026-11-13 07:33:04,255 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG .../modal_dialogs/paper_setup_modal.template.html | 108 -- 2026-11-13 07:33:04,255 [ scc.git] DEBUG .../modal_dialogs/preview_id_change.template.html | 65 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 56 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 42 - 2026-11-13 07:33:04,255 [ scc.git] DEBUG 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100644 src/js/views/util.js 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-11-13 07:33:04,256 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-11-13 07:33:04,257 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-11-13 07:33:04,285 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-11-13 07:33:04,504 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:04,504 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-13 07:33:04,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:04,608 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 711 (Bump source-map-js from 1.2.1 to 1.2.2) 5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-13 07:33:04,762 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 5affb9919bd08c4de17797109288085f666c6ad4. Version 5affb9919bd08c4de17797109288085f666c6ad4 of package-lock.json left in tree. 2026-11-13 07:33:04,781 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:33:04,786 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:33:04,818 [ scc.git] DEBUG Calling 'git reset --hard 359631f3af93a7820eb96d905a14215dea89ef41' 2026-11-13 07:33:04,940 [ scc.git] DEBUG HEAD is now at 359631f3 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-11-13 07:33:05,143 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:05,144 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 5affb9919bd08c4de17797109288085f666c6ad4' 2026-11-13 07:33:05,175 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-11-13 07:33:05,212 [ scc.git] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package-lock.json --conflicts 2026-11-13 07:33:05,222 [ scc.config] DEBUG Found github.token 2026-11-13 07:33:05,222 [ scc.git] DEBUG Not adding comment to issue #711, already --conflicts. 2026-11-13 07:33:05,222 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-13 07:33:05,268 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:05,284 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 713 (Bump dompurify from 3.4.13 to 3.4.17) 383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-13 07:33:05,506 [ scc.git] DEBUG CONFLICT (modify/delete): package-lock.json deleted in HEAD and modified in 383c0e213c0357ff8a4502ef5a50899573132af4. Version 383c0e213c0357ff8a4502ef5a50899573132af4 of package-lock.json left in tree. 2026-11-13 07:33:05,506 [ scc.git] DEBUG CONFLICT (modify/delete): package.json deleted in HEAD and modified in 383c0e213c0357ff8a4502ef5a50899573132af4. Version 383c0e213c0357ff8a4502ef5a50899573132af4 of package.json left in tree. 2026-11-13 07:33:05,525 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:33:05,531 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:33:05,555 [ scc.git] DEBUG Calling 'git reset --hard 359631f3af93a7820eb96d905a14215dea89ef41' 2026-11-13 07:33:05,663 [ scc.git] DEBUG HEAD is now at 359631f3 merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) 2026-11-13 07:33:05,907 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:05,908 [ scc.git] DEBUG Calling 'git merge-base 3195c3df4e7bf2507d9c942d5d8c9a8566498147 383c0e213c0357ff8a4502ef5a50899573132af4' 2026-11-13 07:33:05,951 [ scc.git] DEBUG Calling 'git diff --name-only 3195c3df4e7bf2507d9c942d5d8c9a8566498147..3195c3df4e7bf2507d9c942d5d8c9a8566498147' 2026-11-13 07:33:06,001 [ scc.git] INFO - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #706 will-moore 'Figure repo migration' - package.json - package-lock.json - PR #711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - package-lock.json --conflicts 2026-11-13 07:33:06,017 [ scc.config] DEBUG Found github.token 2026-11-13 07:33:06,018 [ scc.git] DEBUG Not adding comment to issue #713, already --conflicts. 2026-11-13 07:33:06,018 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4986b38e7c0c9b3a1c7fd869236f734346741155' 2026-11-13 07:33:06,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:06,097 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 714 (Fix scalebar label) 4986b38e7c0c9b3a1c7fd869236f734346741155' 2026-11-13 07:33:06,423 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-11-13 07:33:06,494 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:06,570 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 147 +++++++++++---------- 2026-11-13 07:33:06,570 [ scc.git] DEBUG 1 file changed, 78 insertions(+), 69 deletions(-) 2026-11-13 07:33:06,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:06,805 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:33:06,914 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:06,914 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:06,925 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:33:07,049 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:33:07,140 [ scc.git] DEBUG has no local changes 2026-11-13 07:33:07,140 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Excluded PRs: - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' - PR 714 Rdornier 'Fix scalebar label' Conflicting PRs (not included): - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:33:07,325 [ scc.git] DEBUG [detached HEAD cd6c9932] merge master -Dorg -Ssuccess-only 2026-11-13 07:33:07,331 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:33:07,331 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:33:07,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-11-13 07:33:08,500 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-11-13 07:33:08,501 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:09,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:09,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:10,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:10,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:10,863 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:33:11,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-11-13 07:33:11,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-11-13 07:33:12,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:13,113 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:13,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:14,163 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:14,164 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-11-13 07:33:14,164 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:33:14,164 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-13 07:33:14,165 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:14,165 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:14,182 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:33:14,198 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:33:14,198 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:33:14,216 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:33:14,274 [ scc.git] DEBUG Already up to date. 2026-11-13 07:33:14,274 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-11-13 07:33:14,805 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-11-13 07:33:14,805 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-11-13 07:33:14,828 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-11-13 07:33:15,241 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-11-13 07:33:15,241 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-11-13 07:33:15,266 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:33:15,266 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:15,266 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:15,282 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-11-13 07:33:15,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:15,329 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-11-13 07:33:15,549 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-11-13 07:33:15,607 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:15,678 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-11-13 07:33:15,678 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-11-13 07:33:15,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:15,878 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-11-13 07:33:15,909 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:15,920 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-11-13 07:33:16,165 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:16,222 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:33:16,222 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:33:16,429 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:16,429 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:33:16,565 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:16,566 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:16,586 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:33:16,713 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:33:16,792 [ scc.git] DEBUG has no local changes 2026-11-13 07:33:16,792 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:33:16,974 [ scc.git] DEBUG [detached HEAD 0f19906] merge master -Dorg -Ssuccess-only 2026-11-13 07:33:16,976 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:33:16,976 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:33:17,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-11-13 07:33:17,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-11-13 07:33:18,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-11-13 07:33:19,205 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-11-13 07:33:19,208 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:20,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:20,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:21,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:21,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:21,665 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-11-13 07:33:22,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-11-13 07:33:22,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-11-13 07:33:23,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-11-13 07:33:23,399 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:24,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:24,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:25,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:25,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:25,782 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-11-13 07:33:26,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-11-13 07:33:26,309 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:26,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:27,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:28,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:28,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:28,545 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-11-13 07:33:29,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-11-13 07:33:29,087 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:29,799 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:30,307 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:30,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:31,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:31,357 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-11-13 07:33:31,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-11-13 07:33:32,448 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-11-13 07:33:32,449 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:33,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:33,682 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:34,236 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:34,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:34,708 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-11-13 07:33:35,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-11-13 07:33:35,242 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:35,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:36,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:36,973 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:37,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:37,441 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-11-13 07:33:37,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-11-13 07:33:37,985 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:33:38,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:39,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:39,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:40,207 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:40,208 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-11-13 07:33:40,208 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:33:40,208 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-13 07:33:40,209 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:40,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:40,229 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:33:40,247 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:33:40,247 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:33:40,267 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:33:40,321 [ scc.git] DEBUG Already up to date. 2026-11-13 07:33:40,321 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-11-13 07:33:40,761 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:40,761 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-11-13 07:33:40,784 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-11-13 07:33:41,192 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:41,192 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-11-13 07:33:41,274 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-11-13 07:33:41,731 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:41,731 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-11-13 07:33:41,755 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-11-13 07:33:42,166 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:42,166 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-11-13 07:33:42,194 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-11-13 07:33:42,624 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:42,624 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-11-13 07:33:42,647 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-11-13 07:33:43,063 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:43,063 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-11-13 07:33:43,092 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-11-13 07:33:43,491 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-11-13 07:33:43,491 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-11-13 07:33:43,515 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:33:43,515 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:43,515 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:43,530 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-11-13 07:33:43,551 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:43,567 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-11-13 07:33:43,847 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:43,940 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-11-13 07:33:43,941 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-11-13 07:33:44,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:44,148 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-11-13 07:33:44,177 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:44,188 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-11-13 07:33:44,351 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:44,426 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:44,499 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-11-13 07:33:44,499 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-11-13 07:33:44,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:44,716 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-13 07:33:44,746 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:44,759 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-13 07:33:44,918 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:44,918 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-13 07:33:44,937 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:33:44,938 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:33:44,973 [ scc.git] DEBUG Calling 'git reset --hard 6c201b7ab3b232817efe4e38d9c87ada70999b9f' 2026-11-13 07:33:45,164 [ scc.git] DEBUG HEAD is now at 6c201b7 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-11-13 07:33:45,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:45,379 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-11-13 07:33:45,400 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-13 07:33:45,426 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-11-13 07:33:45,437 [ scc.config] DEBUG Found github.token 2026-11-13 07:33:45,438 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-11-13 07:33:45,438 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-11-13 07:33:45,459 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:45,474 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-11-13 07:33:45,635 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:45,750 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:45,811 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-11-13 07:33:45,811 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-11-13 07:33:46,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:46,005 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-11-13 07:33:46,055 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:46,071 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-11-13 07:33:46,246 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:46,303 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:33:46,366 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-11-13 07:33:46,366 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-11-13 07:33:46,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:46,566 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-13 07:33:46,596 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:46,609 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-13 07:33:46,798 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:46,798 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-13 07:33:46,824 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:33:46,827 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:33:46,859 [ scc.git] DEBUG Calling 'git reset --hard 8d1bb12a707ff7af3f544e9937d85b2d38ee7c07' 2026-11-13 07:33:47,027 [ scc.git] DEBUG HEAD is now at 8d1bb12 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-11-13 07:33:47,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:47,275 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-11-13 07:33:47,299 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-13 07:33:47,320 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-11-13 07:33:47,334 [ scc.config] DEBUG Found github.token 2026-11-13 07:33:47,334 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-11-13 07:33:47,334 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-13 07:33:47,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:47,376 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-13 07:33:47,549 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:33:47,550 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-13 07:33:47,570 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:33:47,572 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:33:47,603 [ scc.git] DEBUG Calling 'git reset --hard 8d1bb12a707ff7af3f544e9937d85b2d38ee7c07' 2026-11-13 07:33:47,727 [ scc.git] DEBUG HEAD is now at 8d1bb12 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-11-13 07:33:47,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:33:47,966 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-11-13 07:33:47,991 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-11-13 07:33:48,010 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-11-13 07:33:48,021 [ scc.config] DEBUG Found github.token 2026-11-13 07:33:48,021 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-11-13 07:33:48,021 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:33:48,144 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:48,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:48,167 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:33:48,317 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:33:48,408 [ scc.git] DEBUG has no local changes 2026-11-13 07:33:48,408 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:33:48,606 [ scc.git] DEBUG [detached HEAD 808a822] merge master -Dorg -Ssuccess-only 2026-11-13 07:33:48,609 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:33:48,609 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:33:48,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-11-13 07:33:49,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/587 HTTP/1.1" 200 None 2026-11-13 07:33:50,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/587/comments HTTP/1.1" 200 None 2026-11-13 07:33:50,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:51,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:51,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:33:52,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:52,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:52,909 [ scc.repo] DEBUG - PR 587 will-moore 'Roi columns add remove' 2026-11-13 07:33:53,482 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-11-13 07:33:53,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-11-13 07:33:54,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:55,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:55,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:33:56,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:56,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:56,747 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-11-13 07:33:57,265 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-11-13 07:33:57,825 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-11-13 07:33:58,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:58,969 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:33:59,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-11-13 07:33:59,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:33:59,953 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-11-13 07:33:59,953 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:33:59,954 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-13 07:33:59,954 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:33:59,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:33:59,977 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:33:59,999 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:33:59,999 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:34:00,184 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:34:01,183 [ scc.git] DEBUG Updating 7a798cee..106ca787 2026-11-13 07:34:01,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/586 HTTP/1.1" 200 25183 2026-11-13 07:34:02,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/585 HTTP/1.1" 200 24043 2026-11-13 07:34:02,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/584 HTTP/1.1" 200 22777 2026-11-13 07:34:03,267 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/583 HTTP/1.1" 200 20550 2026-11-13 07:34:03,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/582 HTTP/1.1" 200 27242 2026-11-13 07:34:04,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/581 HTTP/1.1" 200 23668 2026-11-13 07:34:05,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/580 HTTP/1.1" 200 21577 2026-11-13 07:34:05,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/578 HTTP/1.1" 200 30778 2026-11-13 07:34:06,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/577 HTTP/1.1" 200 21922 2026-11-13 07:34:06,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/576 HTTP/1.1" 200 26989 2026-11-13 07:34:07,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/575 HTTP/1.1" 200 31838 2026-11-13 07:34:07,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/497 HTTP/1.1" 200 18610 2026-11-13 07:34:08,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/574 HTTP/1.1" 200 18915 2026-11-13 07:34:09,144 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/573 HTTP/1.1" 200 40387 2026-11-13 07:34:09,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/572 HTTP/1.1" 200 21268 2026-11-13 07:34:10,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/571 HTTP/1.1" 200 20119 2026-11-13 07:34:10,824 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/570 HTTP/1.1" 200 22721 2026-11-13 07:34:11,446 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/568 HTTP/1.1" 200 31503 2026-11-13 07:34:12,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/566 HTTP/1.1" 200 23671 2026-11-13 07:34:12,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/565 HTTP/1.1" 200 27844 2026-11-13 07:34:13,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/564 HTTP/1.1" 200 23009 2026-11-13 07:34:13,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/567 HTTP/1.1" 200 17448 2026-11-13 07:34:14,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 17313 2026-11-13 07:34:15,041 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 17856 2026-11-13 07:34:15,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 34408 2026-11-13 07:34:16,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 19930 2026-11-13 07:34:16,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 21992 2026-11-13 07:34:17,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 21749 2026-11-13 07:34:18,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 38815 2026-11-13 07:34:18,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 21992 2026-11-13 07:34:19,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 27576 2026-11-13 07:34:19,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 17806 2026-11-13 07:34:20,282 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 21324 2026-11-13 07:34:20,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 24859 2026-11-13 07:34:21,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 26186 2026-11-13 07:34:21,922 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 20679 2026-11-13 07:34:22,470 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 20899 2026-11-13 07:34:22,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 25953 2026-11-13 07:34:23,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 26423 2026-11-13 07:34:24,130 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 21572 2026-11-13 07:34:24,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 33916 2026-11-13 07:34:26,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 18272 2026-11-13 07:34:26,752 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 17039 2026-11-13 07:34:27,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 28424 2026-11-13 07:34:27,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 30535 2026-11-13 07:34:28,388 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 26267 2026-11-13 07:34:28,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 18609 2026-11-13 07:34:29,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 17027 2026-11-13 07:34:30,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 26297 2026-11-13 07:34:30,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 21086 2026-11-13 07:34:31,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 20967 2026-11-13 07:34:31,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 26824 2026-11-13 07:34:32,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 20965 2026-11-13 07:34:33,092 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 24905 2026-11-13 07:34:33,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 23636 2026-11-13 07:34:34,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 20250 2026-11-13 07:34:34,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 17590 2026-11-13 07:34:36,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 16384 2026-11-13 07:34:37,109 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 16415 2026-11-13 07:34:37,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 18246 2026-11-13 07:34:38,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 17161 2026-11-13 07:34:38,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 22347 2026-11-13 07:34:39,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 16620 2026-11-13 07:34:39,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 16688 2026-11-13 07:34:39,816 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-11-13 07:34:40,642 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-13 07:34:40,642 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-11-13 07:34:40,670 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-11-13 07:34:41,340 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-13 07:34:41,340 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-11-13 07:34:41,371 [ scc.git] DEBUG Calling 'git fetch origin pull/587/head' 2026-11-13 07:34:42,203 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-11-13 07:34:42,203 [ scc.git] DEBUG * branch refs/pull/587/head -> FETCH_HEAD 2026-11-13 07:34:42,229 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:34:42,229 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:34:42,229 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:34:42,242 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-11-13 07:34:42,365 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:34:42,379 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-11-13 07:34:42,769 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-11-13 07:34:42,831 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:34:42,904 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-11-13 07:34:42,904 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-11-13 07:34:42,904 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-11-13 07:34:43,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:34:43,110 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-13 07:34:43,236 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:34:43,250 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging css/app.css 2026-11-13 07:34:44,302 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:34:44,302 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging package.json 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging src/events/events.js 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-11-13 07:34:44,302 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-11-13 07:34:44,322 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:34:44,328 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:34:44,434 [ scc.git] DEBUG Calling 'git reset --hard 69e56a4522591046a22254b8712afe179fbf9068' 2026-11-13 07:34:44,826 [ scc.git] DEBUG HEAD is now at 69e56a45 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 2026-11-13 07:34:45,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:34:45,052 [ scc.git] DEBUG Calling 'git merge-base 106ca78705971983e6312360c46c4b41f4bf39d7 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-11-13 07:34:45,183 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..106ca78705971983e6312360c46c4b41f4bf39d7' 2026-11-13 07:34:45,217 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - Upstream changes - package-lock.json - css/app.css --conflicts 2026-11-13 07:34:45,229 [ scc.config] DEBUG Found github.token 2026-11-13 07:34:45,229 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-11-13 07:34:45,229 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c' 2026-11-13 07:34:45,343 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:34:45,357 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 587 (Roi columns add remove) e4e21b32f4bd1c6d30e3fb4adb19d1ba926efb6c' 2026-11-13 07:34:45,840 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:34:45,912 [ scc.git] DEBUG css/app.css | 23 ++--- 2026-11-13 07:34:45,912 [ scc.git] DEBUG src/index-dev.html | 2 +- 2026-11-13 07:34:45,912 [ scc.git] DEBUG src/regions/regions-list.html | 205 ++++++++++++++++++++++++------------------ 2026-11-13 07:34:45,912 [ scc.git] DEBUG src/regions/regions-list.js | 81 ++++++++++++++--- 2026-11-13 07:34:45,912 [ scc.git] DEBUG 4 files changed, 195 insertions(+), 116 deletions(-) 2026-11-13 07:34:46,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:34:46,105 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:34:46,249 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:34:46,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:34:46,265 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:34:46,389 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:34:46,508 [ scc.git] DEBUG has no local changes 2026-11-13 07:34:46,509 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..106ca787 Previously merged: - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' - PR 585 dependabot[bot] 'Bump body-parser' - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' - PR 497 will-moore 'ROI Tags' - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 587 will-moore 'Roi columns add remove' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:34:46,691 [ scc.git] DEBUG [detached HEAD 723ec464] merge master -Dorg -Ssuccess-only 2026-11-13 07:34:46,697 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:34:46,697 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:34:47,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-11-13 07:34:47,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-11-13 07:34:48,243 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-11-13 07:34:48,244 [ scc.repo] DEBUG # ... Include label: include 2026-11-13 07:34:48,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:49,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:34:49,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:50,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:34:50,413 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-11-13 07:34:50,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-11-13 07:34:51,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-11-13 07:34:51,474 [ scc.repo] DEBUG # ... Include label: include 2026-11-13 07:34:52,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:52,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:34:53,180 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:53,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:34:53,659 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-11-13 07:34:54,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-11-13 07:34:54,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-11-13 07:34:54,708 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:34:55,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:55,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:34:56,521 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:57,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:34:57,018 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:34:57,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-11-13 07:34:58,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:58,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:34:59,234 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-11-13 07:34:59,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:34:59,699 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:35:00,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-11-13 07:35:00,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-11-13 07:35:00,768 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:00,768 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-13 07:35:00,769 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:00,769 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:00,786 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:00,803 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:00,803 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:00,823 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:00,885 [ scc.git] DEBUG Already up to date. 2026-11-13 07:35:00,885 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-11-13 07:35:01,683 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-13 07:35:01,683 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-11-13 07:35:01,706 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-11-13 07:35:02,146 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-13 07:35:02,146 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-11-13 07:35:02,170 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-11-13 07:35:02,822 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-13 07:35:02,822 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-11-13 07:35:02,849 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-11-13 07:35:03,337 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-11-13 07:35:03,337 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-11-13 07:35:03,366 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:03,366 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:03,366 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:03,381 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-11-13 07:35:03,409 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:03,421 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-11-13 07:35:03,685 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:03,750 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:35:03,750 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:35:03,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:03,951 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-13 07:35:03,975 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:03,987 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-13 07:35:04,209 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-11-13 07:35:04,209 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-11-13 07:35:04,229 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:35:04,230 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:35:04,257 [ scc.git] DEBUG Calling 'git reset --hard 35b096988816f80e3c97179aebcd7c27d4459c48' 2026-11-13 07:35:04,391 [ scc.git] DEBUG HEAD is now at 35b0969 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-11-13 07:35:04,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:04,768 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-11-13 07:35:04,791 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-11-13 07:35:04,809 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-11-13 07:35:04,820 [ scc.config] DEBUG Found github.token 2026-11-13 07:35:04,820 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-11-13 07:35:04,820 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-11-13 07:35:04,856 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:04,870 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-11-13 07:35:05,106 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:05,194 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-11-13 07:35:05,194 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-11-13 07:35:05,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:05,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-11-13 07:35:05,656 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:05,675 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-11-13 07:35:06,066 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-11-13 07:35:06,135 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:06,206 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-11-13 07:35:06,206 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-11-13 07:35:06,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:06,405 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:06,572 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:06,572 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:06,584 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:06,705 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:06,760 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:06,761 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:06,961 [ scc.git] DEBUG [detached HEAD b8ec4a9] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:06,964 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:06,964 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:07,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-11-13 07:35:08,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-11-13 07:35:08,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-11-13 07:35:09,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:09,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:10,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:10,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:10,829 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-11-13 07:35:11,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-11-13 07:35:11,966 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-11-13 07:35:12,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:13,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:13,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:14,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:14,087 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-11-13 07:35:14,087 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:14,087 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-13 07:35:14,088 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:14,088 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:14,107 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:14,129 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:14,129 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:14,166 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:14,491 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-11-13 07:35:14,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 16963 2026-11-13 07:35:15,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 17070 2026-11-13 07:35:15,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 17048 2026-11-13 07:35:15,969 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-11-13 07:35:16,741 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-11-13 07:35:16,741 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-11-13 07:35:16,767 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-11-13 07:35:17,228 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-11-13 07:35:17,228 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-11-13 07:35:17,251 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:17,252 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:17,252 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:17,268 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-13 07:35:17,330 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:17,343 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-13 07:35:17,561 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-11-13 07:35:17,561 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-11-13 07:35:17,561 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-11-13 07:35:17,583 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:35:17,584 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:35:17,638 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-11-13 07:35:17,770 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-11-13 07:35:17,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:17,969 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-11-13 07:35:18,020 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-11-13 07:35:18,048 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-11-13 07:35:18,060 [ scc.config] DEBUG Found github.token 2026-11-13 07:35:18,060 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-11-13 07:35:18,060 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-11-13 07:35:18,109 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:18,122 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-11-13 07:35:18,330 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:18,402 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-11-13 07:35:18,403 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-11-13 07:35:18,609 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:18,609 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:18,755 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:18,755 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:18,767 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:18,895 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:18,954 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:18,954 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:19,122 [ scc.git] DEBUG [detached HEAD a4aad1f] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:19,124 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:19,124 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:19,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-11-13 07:35:20,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-11-13 07:35:20,721 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:21,275 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:21,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:22,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:22,293 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:35:22,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-11-13 07:35:22,844 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:35:23,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:24,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:24,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:25,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:25,062 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-11-13 07:35:25,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-11-13 07:35:25,630 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:35:26,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:27,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:27,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:28,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:28,002 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-11-13 07:35:28,529 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-11-13 07:35:29,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-11-13 07:35:29,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-11-13 07:35:30,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-11-13 07:35:30,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-11-13 07:35:31,187 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-11-13 07:35:31,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-11-13 07:35:31,761 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:31,761 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-13 07:35:31,761 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:31,761 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:31,783 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:31,799 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:31,800 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:31,820 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:31,894 [ scc.git] DEBUG Already up to date. 2026-11-13 07:35:31,894 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-11-13 07:35:32,349 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-13 07:35:32,349 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-11-13 07:35:32,375 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-11-13 07:35:32,839 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-13 07:35:32,839 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-11-13 07:35:32,862 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-11-13 07:35:33,360 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-11-13 07:35:33,360 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-11-13 07:35:33,386 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:33,386 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:33,386 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:33,399 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-11-13 07:35:33,418 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:33,432 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-11-13 07:35:33,782 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:33,853 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-11-13 07:35:33,853 [ scc.git] DEBUG package.json | 2 +- 2026-11-13 07:35:33,853 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-11-13 07:35:34,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:34,065 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-11-13 07:35:34,096 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:34,110 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-11-13 07:35:34,312 [ scc.git] DEBUG Auto-merging package-lock.json 2026-11-13 07:35:34,312 [ scc.git] DEBUG Auto-merging package.json 2026-11-13 07:35:34,384 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:34,451 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-11-13 07:35:34,451 [ scc.git] DEBUG package.json | 2 +- 2026-11-13 07:35:34,451 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-11-13 07:35:34,668 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:34,669 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-11-13 07:35:34,703 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:34,719 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-11-13 07:35:34,958 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:35,020 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:35:35,020 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:35:35,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:35,218 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:35,358 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:35,358 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:35,371 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:35,575 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:35,725 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:35,725 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:35,982 [ scc.git] DEBUG [detached HEAD 0aa91de] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:35,984 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:35,984 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:36,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-11-13 07:35:36,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-11-13 07:35:36,839 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:35:37,531 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:38,029 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:38,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:39,021 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:39,022 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:35:39,022 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:39,022 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-13 07:35:39,023 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:39,023 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:39,058 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:39,093 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:39,093 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:39,114 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:39,166 [ scc.git] DEBUG Already up to date. 2026-11-13 07:35:39,166 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-11-13 07:35:39,616 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-11-13 07:35:39,616 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-11-13 07:35:39,640 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:39,640 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:39,640 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:39,656 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-11-13 07:35:39,674 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:39,688 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-11-13 07:35:39,903 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:39,986 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:35:39,986 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:35:40,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:40,189 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:40,316 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:40,316 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:40,332 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:40,453 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:40,500 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:40,500 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:40,651 [ scc.git] DEBUG [detached HEAD 7497a9b] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:40,653 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:40,653 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:41,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-11-13 07:35:41,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-11-13 07:35:41,593 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:41,593 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-13 07:35:41,594 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:41,594 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:41,612 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:41,631 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:41,631 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:41,677 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:41,900 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-11-13 07:35:42,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 16718 2026-11-13 07:35:42,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 16749 2026-11-13 07:35:42,789 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:42,789 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:42,789 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:42,808 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:42,948 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:42,948 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:42,961 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:43,084 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:43,213 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:43,214 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:43,406 [ scc.git] DEBUG [detached HEAD bd269fe] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:43,408 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:43,408 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:43,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-11-13 07:35:44,317 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-11-13 07:35:44,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-11-13 07:35:45,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:45,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:46,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:47,026 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:47,026 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-11-13 07:35:47,026 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:47,026 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-13 07:35:47,027 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:47,027 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:47,050 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:47,099 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:47,100 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:47,126 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:47,377 [ scc.git] DEBUG Updating be76813..5a64360 2026-11-13 07:35:47,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls/24 HTTP/1.1" 200 16858 2026-11-13 07:35:48,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls/23 HTTP/1.1" 200 25394 2026-11-13 07:35:48,221 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-11-13 07:35:48,784 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-11-13 07:35:48,784 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-11-13 07:35:48,808 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:48,808 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:48,808 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:48,821 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-13 07:35:48,855 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:48,867 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-13 07:35:49,153 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG Auto-merging setup.py 2026-11-13 07:35:49,153 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-11-13 07:35:49,175 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:35:49,176 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:35:49,246 [ scc.git] DEBUG Calling 'git reset --hard 5a643604069047aa316f490d1a0b5adba78b079e' 2026-11-13 07:35:49,401 [ scc.git] DEBUG HEAD is now at 5a64360 Merge pull request #24 from pwalczysko/master 2026-11-13 07:35:49,591 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:49,591 [ scc.git] DEBUG Calling 'git merge-base 5a643604069047aa316f490d1a0b5adba78b079e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-11-13 07:35:49,628 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..5a643604069047aa316f490d1a0b5adba78b079e' 2026-11-13 07:35:49,656 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - Upstream changes - setup.py - omero_signup/urls.py - omero_signup/signup_settings.py - omero_signup/views.py --conflicts 2026-11-13 07:35:49,666 [ scc.config] DEBUG Found github.token 2026-11-13 07:35:49,666 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-11-13 07:35:49,666 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:49,776 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:49,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:49,788 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:49,888 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:49,946 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:49,947 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Updating be76813..5a64360 Previously merged: - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:50,072 [ scc.git] DEBUG [detached HEAD 46697f1] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:50,074 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:50,074 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:50,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-11-13 07:35:51,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-11-13 07:35:51,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-11-13 07:35:52,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-11-13 07:35:52,712 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:53,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:35:53,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:54,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:35:54,268 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-11-13 07:35:54,269 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:35:54,269 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-13 07:35:54,269 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:54,269 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:54,289 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:35:54,317 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:35:54,317 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:35:54,350 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:35:54,561 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-11-13 07:35:54,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 16892 2026-11-13 07:35:55,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 16663 2026-11-13 07:35:56,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 17516 2026-11-13 07:35:56,077 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-11-13 07:35:56,675 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-11-13 07:35:56,675 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-11-13 07:35:56,696 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:35:56,696 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:56,696 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:56,709 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-11-13 07:35:56,734 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:56,747 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-11-13 07:35:56,967 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-11-13 07:35:57,027 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:35:57,095 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-11-13 07:35:57,095 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-11-13 07:35:57,095 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-11-13 07:35:57,095 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-11-13 07:35:57,095 [ scc.git] DEBUG ms/test | 2 ++ 2026-11-13 07:35:57,095 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-11-13 07:35:57,095 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-11-13 07:35:57,095 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-11-13 07:35:57,095 [ scc.git] DEBUG create mode 100755 ms/test 2026-11-13 07:35:57,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:35:57,312 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:35:57,454 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:35:57,454 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:35:57,472 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:35:57,588 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:35:57,654 [ scc.git] DEBUG has no local changes 2026-11-13 07:35:57,654 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:35:57,784 [ scc.git] DEBUG [detached HEAD 873f942] merge master -Dorg -Ssuccess-only 2026-11-13 07:35:57,785 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:35:57,785 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:35:58,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-11-13 07:35:58,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-11-13 07:35:58,627 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:35:59,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-11-13 07:35:59,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:00,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:00,858 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:00,858 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:36:00,859 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:00,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-13 07:36:00,860 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:00,860 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:00,905 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:36:00,943 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:00,943 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:36:00,989 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:36:01,089 [ scc.git] DEBUG Already up to date. 2026-11-13 07:36:01,089 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-11-13 07:36:01,634 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-11-13 07:36:01,634 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-11-13 07:36:01,718 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:01,718 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:01,718 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:01,839 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-11-13 07:36:01,918 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:01,970 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-11-13 07:36:02,347 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:02,483 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:36:02,483 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:36:02,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:02,714 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:02,932 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:02,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:02,983 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:03,181 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:03,262 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:03,262 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:03,499 [ scc.git] DEBUG [detached HEAD 9f189be] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:03,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:03,500 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:03,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-11-13 07:36:04,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-11-13 07:36:04,450 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:36:05,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:05,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:06,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:06,578 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:06,579 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:36:06,579 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:06,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-13 07:36:06,580 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:06,580 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:06,601 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:36:06,630 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:06,631 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:36:06,675 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:36:06,909 [ scc.git] DEBUG Updating deab817..160d894 2026-11-13 07:36:07,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 17446 2026-11-13 07:36:07,286 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-11-13 07:36:07,846 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-11-13 07:36:07,846 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-11-13 07:36:07,910 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:07,912 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:07,912 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:07,929 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-11-13 07:36:07,967 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:07,989 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-11-13 07:36:08,187 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:08,260 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:36:08,261 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:36:08,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:08,453 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:08,635 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:08,635 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:08,656 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:08,840 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:08,932 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:08,932 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:09,159 [ scc.git] DEBUG [detached HEAD b9e90e7] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:09,161 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:09,162 [ scc.git] INFO Overriding base-branch from master to main 2026-11-13 07:36:09,162 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:09,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-11-13 07:36:10,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-11-13 07:36:10,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-11-13 07:36:11,367 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:11,880 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:12,379 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:12,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:12,857 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-11-13 07:36:13,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-11-13 07:36:13,982 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-11-13 07:36:14,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-11-13 07:36:15,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:15,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:16,077 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:16,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:16,558 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-11-13 07:36:16,558 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:16,558 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-13 07:36:16,559 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:16,559 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:16,611 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-11-13 07:36:16,634 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:16,634 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-11-13 07:36:16,678 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-11-13 07:36:16,876 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-11-13 07:36:17,216 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 16957 2026-11-13 07:36:17,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 17011 2026-11-13 07:36:17,777 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-11-13 07:36:18,370 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-11-13 07:36:18,370 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-11-13 07:36:18,397 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-11-13 07:36:19,123 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-11-13 07:36:19,123 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-11-13 07:36:19,155 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:19,155 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:19,155 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:19,168 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-13 07:36:19,196 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:19,212 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-13 07:36:19,411 [ scc.git] DEBUG Auto-merging README.rst 2026-11-13 07:36:19,411 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-11-13 07:36:19,411 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-11-13 07:36:19,411 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-11-13 07:36:19,433 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-11-13 07:36:19,435 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-11-13 07:36:19,488 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-11-13 07:36:19,624 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-11-13 07:36:19,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:19,870 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-11-13 07:36:19,900 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-11-13 07:36:19,917 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#125](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-11-13 07:36:19,934 [ scc.config] DEBUG Found github.token 2026-11-13 07:36:19,934 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-11-13 07:36:19,934 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-11-13 07:36:19,990 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:20,006 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-11-13 07:36:20,255 [ scc.git] DEBUG Auto-merging README.rst 2026-11-13 07:36:20,255 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-11-13 07:36:20,326 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:20,403 [ scc.git] DEBUG README.rst | 3 + 2026-11-13 07:36:20,403 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-11-13 07:36:20,403 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-11-13 07:36:20,406 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-11-13 07:36:20,406 [ scc.git] DEBUG setup.py | 5 +- 2026-11-13 07:36:20,406 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-11-13 07:36:20,406 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-11-13 07:36:20,607 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:20,608 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:20,827 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:20,827 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:20,839 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:21,002 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:21,079 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:21,079 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:21,230 [ scc.git] DEBUG [detached HEAD 0c4b519] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:21,232 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:21,232 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:21,590 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-11-13 07:36:22,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-11-13 07:36:22,139 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:36:22,829 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:23,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:23,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:24,302 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:24,303 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:36:24,303 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:24,303 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-13 07:36:24,304 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:24,304 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:24,335 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:36:24,355 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:24,355 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:36:24,372 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:36:24,440 [ scc.git] DEBUG Already up to date. 2026-11-13 07:36:24,440 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-11-13 07:36:24,900 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-11-13 07:36:24,900 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-11-13 07:36:24,928 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:24,928 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:24,928 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:24,945 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-11-13 07:36:24,969 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:24,982 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-11-13 07:36:25,188 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:25,266 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:36:25,266 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:36:25,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:25,477 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:25,639 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:25,639 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:25,658 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:25,781 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:25,884 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:25,884 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:26,033 [ scc.git] DEBUG [detached HEAD 389d03d] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:26,035 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:26,035 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:26,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-11-13 07:36:26,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-11-13 07:36:26,981 [ scc.repo] DEBUG # ... Include label: dependencies 2026-11-13 07:36:28,124 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:28,648 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:29,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:29,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:29,658 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:36:29,658 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:29,658 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-13 07:36:29,659 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:29,659 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:29,682 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:36:29,703 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:29,703 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:36:29,738 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:36:29,814 [ scc.git] DEBUG Already up to date. 2026-11-13 07:36:29,815 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-11-13 07:36:30,251 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-11-13 07:36:30,251 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-11-13 07:36:30,289 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:30,289 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:30,289 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:30,306 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-11-13 07:36:30,329 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:30,344 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-11-13 07:36:30,748 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:30,858 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-11-13 07:36:30,858 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-11-13 07:36:31,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:31,059 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:31,310 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:31,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:31,343 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:31,569 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:31,637 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:31,637 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:31,826 [ scc.git] DEBUG [detached HEAD 9399b3b] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:31,828 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:31,828 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:32,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-11-13 07:36:32,068 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:32,068 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-13 07:36:32,068 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:32,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:32,091 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-11-13 07:36:32,113 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:32,113 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-11-13 07:36:32,132 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-11-13 07:36:32,189 [ scc.git] DEBUG Already up to date. 2026-11-13 07:36:32,189 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:32,189 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:32,189 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:32,218 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:32,392 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:32,392 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:32,410 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:32,553 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:32,685 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:32,685 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:32,821 [ scc.git] DEBUG [detached HEAD 2aa1851] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:32,822 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:32,823 [ scc.git] INFO Overriding base-branch from master to develop 2026-11-13 07:36:32,823 [ scc.repo] DEBUG ## PRs found: 2026-11-13 07:36:33,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-11-13 07:36:33,698 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/236 HTTP/1.1" 200 None 2026-11-13 07:36:34,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:34,746 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:35,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:36:35,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/36fd91e019a51df089516f63208bb80f12f39179?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:36,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/36fd91e019a51df089516f63208bb80f12f39179?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:36,343 [ scc.repo] DEBUG - PR 236 will-moore 'Rename text column to shape_text to be more explicit' 2026-11-13 07:36:36,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-11-13 07:36:37,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:37,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-11-13 07:36:38,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-11-13 07:36:39,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-11-13 07:36:39,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-11-13 07:36:39,487 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-11-13 07:36:39,487 [ scc.repo] DEBUG ## Branches found: 2026-11-13 07:36:39,487 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-13 07:36:39,488 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:39,488 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:39,510 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-11-13 07:36:39,549 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-11-13 07:36:39,549 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-11-13 07:36:39,633 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-11-13 07:36:40,030 [ scc.git] DEBUG Updating 4b4c755..636540e 2026-11-13 07:36:40,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/235 HTTP/1.1" 200 16917 2026-11-13 07:36:40,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 15981 2026-11-13 07:36:41,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 16955 2026-11-13 07:36:42,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 16867 2026-11-13 07:36:42,735 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 16558 2026-11-13 07:36:43,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 27438 2026-11-13 07:36:43,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 15967 2026-11-13 07:36:44,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 16464 2026-11-13 07:36:44,376 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-11-13 07:36:45,090 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-11-13 07:36:45,090 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-11-13 07:36:45,131 [ scc.git] DEBUG Calling 'git fetch origin pull/236/head' 2026-11-13 07:36:45,615 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-11-13 07:36:45,615 [ scc.git] DEBUG * branch refs/pull/236/head -> FETCH_HEAD 2026-11-13 07:36:45,643 [ scc.git] DEBUG ## Unique users: [] 2026-11-13 07:36:45,643 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:45,643 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:45,666 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-11-13 07:36:45,729 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:45,749 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-11-13 07:36:46,128 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:46,202 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-11-13 07:36:46,203 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-11-13 07:36:46,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:46,392 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...36fd91e019a51df089516f63208bb80f12f39179' 2026-11-13 07:36:46,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:46,477 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 236 (Rename text column to shape_text to be more explicit) 36fd91e019a51df089516f63208bb80f12f39179' 2026-11-13 07:36:46,719 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-11-13 07:36:46,793 [ scc.git] DEBUG omero/export_scripts/Batch_ROI_Export.py | 6 ++---- 2026-11-13 07:36:46,793 [ scc.git] DEBUG test/integration/test_export_scripts.py | 2 +- 2026-11-13 07:36:46,793 [ scc.git] DEBUG 2 files changed, 3 insertions(+), 5 deletions(-) 2026-11-13 07:36:47,005 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:47,005 [ scc.git] DEBUG Calling 'git submodule update' 2026-11-13 07:36:47,136 [ scc.git] DEBUG Get sha1 of %s 2026-11-13 07:36:47,136 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-11-13 07:36:47,149 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:47,258 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:36:47,324 [ scc.git] DEBUG has no local changes 2026-11-13 07:36:47,324 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..636540e Previously merged: - PR 235 will-moore 'Batch roi export tags' - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 236 will-moore 'Rename text column to shape_text to be more explicit' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:36:47,444 [ scc.git] DEBUG [detached HEAD 431b2f9] merge master -Dorg -Ssuccess-only 2026-11-13 07:36:47,445 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:36:47,446 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-11-13 07:36:47,701 [ scc.config] DEBUG Found submodule.figure.url 2026-11-13 07:36:47,914 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:47,964 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-11-13 07:36:48,353 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:48,382 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-11-13 07:36:48,389 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-11-13 07:36:48,797 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:48,831 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-11-13 07:36:48,840 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-11-13 07:36:49,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:49,383 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-11-13 07:36:49,390 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-11-13 07:36:49,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:49,746 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-11-13 07:36:50,161 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:50,195 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-11-13 07:36:50,204 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-11-13 07:36:50,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:50,625 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-11-13 07:36:50,633 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-11-13 07:36:51,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:51,075 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-11-13 07:36:51,084 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-11-13 07:36:51,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:51,555 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-11-13 07:36:51,565 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-11-13 07:36:51,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:51,992 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-11-13 07:36:52,002 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-11-13 07:36:52,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:52,444 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-11-13 07:36:52,453 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-11-13 07:36:52,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:52,891 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-11-13 07:36:52,898 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-11-13 07:36:53,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:53,342 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-11-13 07:36:53,410 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-11-13 07:36:53,767 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:53,806 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-11-13 07:36:54,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:54,275 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-11-13 07:36:54,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:54,716 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-11-13 07:36:54,724 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-11-13 07:36:55,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:55,150 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-11-13 07:36:55,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:55,613 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-11-13 07:36:56,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:56,065 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-11-13 07:36:56,075 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-11-13 07:36:56,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:56,558 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-11-13 07:36:56,567 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-11-13 07:36:56,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:56,994 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-11-13 07:36:57,004 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-11-13 07:36:57,404 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:57,436 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-11-13 07:36:57,443 [ scc.config] DEBUG Found submodule.scripts.url 2026-11-13 07:36:57,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-11-13 07:36:57,870 [ scc.config] DEBUG Found submodule.scripts.branch 2026-11-13 07:36:57,870 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-11-13 07:37:00,640 [ scc.git] DEBUG has local changes 2026-11-13 07:37:00,640 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' - PR 435 will-moore 'Add omero-biofilefinder as a submodule' Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (exclude comment) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..48591c0 Previously merged: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 24 Tom-TBT 'Label selection timeout & blur fix' - PR 20 will-moore 'Hide export dropdown unless omero' - PR 19 Rdornier 'Fix rectangle crop' - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' - PR 26 will-moore 'Remove python script' - PR 30 will-moore 'License to BSD' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Excluded PRs: - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' - PR 714 Rdornier 'Fix scalebar label' Conflicting PRs (not included): - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..106ca787 Previously merged: - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' - PR 585 dependabot[bot] 'Bump body-parser' - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' - PR 497 will-moore 'ROI Tags' - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 587 will-moore 'Roi columns add remove' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Updating be76813..5a64360 Previously merged: - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..636540e Previously merged: - PR 235 will-moore 'Batch roi export tags' - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' - PR 236 will-moore 'Rename text column to shape_text to be more explicit' Generated by OMERO-plugins-push#125 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/125/)' 2026-11-13 07:37:01,808 [ scc.git] DEBUG [detached HEAD 8ce0797] merge master -Dorg -Ssuccess-only 2026-11-13 07:37:01,808 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-11-13 07:37:01,809 [ scc.merge] INFO Repository: ome/omero-plugins 2026-11-13 07:37:01,809 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,809 [ scc.merge] INFO 2026-11-13 07:37:01,809 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 435 will-moore 'Add omero-biofilefinder as a submodule' 2026-11-13 07:37:01,809 [ scc.merge] INFO 2026-11-13 07:37:01,809 [ scc.merge] INFO Repository: ome/figure 2026-11-13 07:37:01,809 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (exclude comment) 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-11-13 07:37:01,809 [ scc.merge] INFO Updating 3935875..48591c0 2026-11-13 07:37:01,809 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 24 Tom-TBT 'Label selection timeout & blur fix' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-11-13 07:37:01,809 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-11-13 07:37:01,809 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 21 tcompa 'Avoid request to `WEBGATEWAYINDEX + "open_with/` if `APP_SERVED_BY_OMERO = false`' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 26 will-moore 'Remove python script' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 30 will-moore 'License to BSD' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-11-13 07:37:01,810 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-11-13 07:37:01,810 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-11-13 07:37:01,810 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-11-13 07:37:01,810 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-11-13 07:37:01,810 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-11-13 07:37:01,810 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-11-13 07:37:01,810 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-11-13 07:37:01,810 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-11-13 07:37:01,810 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-11-13 07:37:01,810 [ scc.merge] INFO 2026-11-13 07:37:01,810 [ scc.merge] INFO Repository: ome/omero-figure 2026-11-13 07:37:01,810 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 715 Rdornier 'Fix VSI pyramids rendering' (user: Rdornier) 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 712 dependabot[bot] 'Bump vite from 8.0.16 to 8.1.6' (status: failure) 2026-11-13 07:37:01,810 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-11-13 07:37:01,810 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-11-13 07:37:01,810 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,811 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 714 Rdornier 'Fix scalebar label' 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,811 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 711 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 713 dependabot[bot] 'Bump dompurify from 3.4.13 to 3.4.17' 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,811 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-11-13 07:37:01,811 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,811 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-11-13 07:37:01,811 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,811 [ scc.merge] INFO Repository: ome/omero-gallery 2026-11-13 07:37:01,811 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,811 [ scc.merge] INFO 2026-11-13 07:37:01,812 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-11-13 07:37:01,812 [ scc.merge] INFO 2026-11-13 07:37:01,812 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-11-13 07:37:01,812 [ scc.merge] INFO 2026-11-13 07:37:01,812 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-11-13 07:37:01,812 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-11-13 07:37:01,812 [ scc.merge] INFO Updating 7a798cee..106ca787 2026-11-13 07:37:01,812 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 586 dependabot[bot] 'Bump serialize-javascript from 7.1.2 to 7.1.4' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 585 dependabot[bot] 'Bump body-parser' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 584 dependabot[bot] 'Bump qs from 6.16.0 to 6.16.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 583 dependabot[bot] 'Bump follow-redirects from 1.16.0 to 1.16.3' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 582 dependabot[bot] 'Bump postcss-selector-parser from 6.0.13 to 6.1.5' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 581 dependabot[bot] 'Bump fast-uri from 3.1.8 to 3.1.9' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 580 dependabot[bot] 'Bump launch-editor from 2.14.1 to 2.14.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 578 dependabot[bot] 'Bump compression from 1.8.1 to 1.8.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 577 dependabot[bot] 'Bump source-map-js from 1.2.1 to 1.2.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 576 dependabot[bot] 'Bump shell-quote from 1.10.0 to 1.12.0' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 575 dependabot[bot] 'Bump proxy-addr from 2.0.7 to 2.0.8' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 497 will-moore 'ROI Tags' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 574 dependabot[bot] 'Bump minimatch from 3.1.2 to 3.1.5' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 573 dependabot[bot] 'Bump serialize-javascript and mocha' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 572 dependabot[bot] 'Bump brace-expansion from 1.1.13 to 1.1.21' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 571 dependabot[bot] 'Bump fast-uri from 3.1.7 to 3.1.8' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 570 dependabot[bot] 'Bump engine.io from 6.6.9 to 6.6.11' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 568 dependabot[bot] 'Bump webpack-dev-middleware from 8.1.0 to 8.3.0' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-11-13 07:37:01,812 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 587 will-moore 'Roi columns add remove' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Repository: ome/omero-mapr 2026-11-13 07:37:01,813 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-11-13 07:37:01,813 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Repository: ome/omero-metadata 2026-11-13 07:37:01,813 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-11-13 07:37:01,813 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Repository: ome/omero-parade 2026-11-13 07:37:01,813 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-11-13 07:37:01,813 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-11-13 07:37:01,813 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,813 [ scc.merge] INFO Repository: ome/omero-rois 2026-11-13 07:37:01,813 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-11-13 07:37:01,813 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-11-13 07:37:01,813 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-11-13 07:37:01,813 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-11-13 07:37:01,813 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/omero-signup 2026-11-13 07:37:01,814 [ scc.merge] INFO Updating be76813..5a64360 2026-11-13 07:37:01,814 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 24 pwalczysko 'Upgrade framework, pip, certifi, actions, fix typo' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 23 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.14.3 in /.github/workflows' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-11-13 07:37:01,814 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-11-13 07:37:01,814 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-11-13 07:37:01,814 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/omero-upload 2026-11-13 07:37:01,814 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-11-13 07:37:01,814 [ scc.merge] INFO Updating deab817..160d894 2026-11-13 07:37:01,814 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-11-13 07:37:01,814 [ scc.merge] INFO Excluded PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-11-13 07:37:01,814 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-11-13 07:37:01,814 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Conflicting PRs (not included): 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-11-13 07:37:01,814 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-11-13 07:37:01,814 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-11-13 07:37:01,814 [ scc.merge] INFO Already up to date. 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO 2026-11-13 07:37:01,814 [ scc.merge] INFO Repository: ome/scripts 2026-11-13 07:37:01,814 [ scc.merge] INFO Updating 4b4c755..636540e 2026-11-13 07:37:01,814 [ scc.merge] INFO Previously merged: 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 235 will-moore 'Batch roi export tags' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-11-13 07:37:01,814 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-11-13 07:37:01,815 [ scc.merge] INFO 2026-11-13 07:37:01,815 [ scc.merge] INFO Merged PRs: 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-11-13 07:37:01,815 [ scc.merge] INFO - PR 236 will-moore 'Rename text column to shape_text to be more explicit' 2026-11-13 07:37:01,815 [ scc.merge] INFO 2026-11-13 07:37:01,815 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-11-13 07:37:01,815 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,833 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-11-13 07:37:01,833 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,859 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-11-13 07:37:01,859 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,878 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-11-13 07:37:01,878 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,909 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-11-13 07:37:01,909 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,926 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-11-13 07:37:01,926 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,942 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,943 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-11-13 07:37:01,943 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,961 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-11-13 07:37:01,961 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-11-13 07:37:01,974 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:01,987 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:01,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-11-13 07:37:01,988 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,001 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-11-13 07:37:02,001 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,017 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-11-13 07:37:02,017 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,030 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-11-13 07:37:02,030 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,048 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-11-13 07:37:02,048 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,062 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-11-13 07:37:02,063 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,076 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-11-13 07:37:02,076 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,089 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-11-13 07:37:02,089 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,101 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,102 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-11-13 07:37:02,102 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,118 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-11-13 07:37:02,118 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,133 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-11-13 07:37:02,133 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,147 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,148 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-11-13 07:37:02,148 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,168 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-11-13 07:37:02,168 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,190 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-11-13 07:37:02,190 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-11-13 07:37:02,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-11-13 07:37:02,209 [ scc.git] DEBUG Calling 'git remote' 2026-11-13 07:37:02,229 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-duplicate). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-duplicate). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-render). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-cli-render). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/__init__.py:94: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. !! ******************************************************************************** Requirements should be satisfied by a PEP 517 installer. If you are using pip, you can try `pip install --use-pep517`. ******************************************************************************** !! dist.fetch_build_eggs(dist.setup_requires) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0' self.metadata.version = self._normalize_version(self.metadata.version) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-fpbioimage). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:334: InformationOnly: Normalizing '0.4.2dev0' to '0.4.2.dev0' self.metadata.version = self._normalize_version(self.metadata.version) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-fpbioimage). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-gallery). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-gallery). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-mapr). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-mapr). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-rois/setup.py:24: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-signup). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-signup). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/omero-web-zarr/setup.py:5: SetuptoolsDeprecationWarning: The test command is disabled and references to it are deprecated. !! ******************************************************************************** Please remove any references to `setuptools.command.test` in all supported versions of the affected package. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. ******************************************************************************** !! from setuptools.command.test import test as test_command /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-weberror). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-weberror). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-webtest). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead. !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. (Affected: omero-webtest). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self._enforce_underscore(opt, section) python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /home/omero/workspace/OMERO-plugins-push/build/venv/lib/python3.11/site-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 3204b65] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add ..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 7e4b19d] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-11-13 07:38:17,280 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-11-13 07:38:29,090 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-11-13 07:38:32,098 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-13 07:38:37,982 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-11-13 07:39:46,389 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci [Pipeline] archiveArtifacts Archiving artifacts [Pipeline] } [Pipeline] // node [Pipeline] End of Pipeline Finished: SUCCESS