Started by upstream project "Trigger" build number 52
originally caused by:
Started by timer
[Pipeline] Start of Pipeline
[Pipeline] node
Running on testintegration in /home/omero/workspace/OMERO-plugins-push
[Pipeline] {
[Pipeline] library
Loading library recursiveMerge@master
Attempting to resolve master from remote references...
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2
The recommended git tool is: NONE
No credentials specified
> git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10
Fetching changes from the remote Git repository
> git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10
Fetching without tags
Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git
> git --version # timeout=10
> git --version # 'git version 2.47.3'
> git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master)
> git config core.sparsecheckout # timeout=10
> git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
Commit message: "Merge pull request #18 from jburel/python_311"
> git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10
[Pipeline] checkout
The recommended git tool is: NONE
No credentials specified
Fetching changes from the remote Git repository
> git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10
> git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10
Fetching upstream changes from https://github.com/ome/omero-plugins.git
> git --version # timeout=10
> git --version # 'git version 2.52.0'
> git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10
Checking out Revision 84258d5f2eea775a37267d49c87b3698bcfa5d38 (refs/remotes/origin/master)
> git rev-parse refs/remotes/origin/master^{commit} # timeout=10
> git config core.sparsecheckout # timeout=10
> git checkout -f 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10
Commit message: "Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378"
> git rev-list --no-walk 84258d5f2eea775a37267d49c87b3698bcfa5d38 # timeout=10
Cleaning workspace
> git rev-parse --verify HEAD # timeout=10
Resetting working tree
> git reset --hard # timeout=10
> git clean -fdx # timeout=10
> git submodule foreach --recursive git reset --hard # timeout=10
> git submodule foreach --recursive git clean -fdx # timeout=10
> git remote # timeout=10
> git submodule init # timeout=10
> git submodule sync # timeout=10
> git config --get remote.origin.url # timeout=10
> git submodule init # timeout=10
> git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10
> git config --get submodule.omero-figure.url # timeout=10
> git config -f .gitmodules --get submodule.omero-figure.path # timeout=10
> git config --get submodule.minimal-omero-client.url # timeout=10
> git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10
> git config --get submodule.scripts.url # timeout=10
> git config -f .gitmodules --get submodule.scripts.path # timeout=10
> git config --get submodule.omero-test-infra.url # timeout=10
> git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10
> git config --get submodule.omero-prometheus-tools.url # timeout=10
> git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10
> git config --get submodule.omero-parade.url # timeout=10
> git config -f .gitmodules --get submodule.omero-parade.path # timeout=10
> git config --get submodule.omero-mapr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10
> git config --get submodule.omero-fpbioimage.url # timeout=10
> git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10
> git config --get submodule.omero-iviewer.url # timeout=10
> git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10
> git config --get submodule.omero-gallery.url # timeout=10
> git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10
> git config --get submodule.rOMERO-gateway.url # timeout=10
> git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10
> git config --get submodule.omero-weberror.url # timeout=10
> git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10
> git config --get submodule.omero-cli-render.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10
> git config --get submodule.omero-cli-duplicate.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10
> git config --get submodule.omero-metadata.url # timeout=10
> git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10
> git config --get submodule.omero-webtest.url # timeout=10
> git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10
> git config --get submodule.omero-upload.url # timeout=10
> git config -f .gitmodules --get submodule.omero-upload.path # timeout=10
> git config --get submodule.omero-virtual-microscope.url # timeout=10
> git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10
> git config --get submodule.omero-rois.url # timeout=10
> git config -f .gitmodules --get submodule.omero-rois.path # timeout=10
> git config --get submodule.omero-signup.url # timeout=10
> git config -f .gitmodules --get submodule.omero-signup.path # timeout=10
> git config --get submodule.omero-web-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10
> git config --get submodule.omero-cli-zarr.url # timeout=10
> git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10
> git submodule update --init --recursive omero-figure # timeout=10
> git submodule update --init --recursive minimal-omero-client # timeout=10
> git submodule update --init --recursive scripts # timeout=10
> git submodule update --init --recursive omero-test-infra # timeout=10
> git submodule update --init --recursive omero-prometheus-tools # timeout=10
> git submodule update --init --recursive omero-parade # timeout=10
> git submodule update --init --recursive omero-mapr # timeout=10
> git submodule update --init --recursive omero-fpbioimage # timeout=10
> git submodule update --init --recursive omero-iviewer # timeout=10
> git submodule update --init --recursive omero-gallery # timeout=10
> git submodule update --init --recursive rOMERO-gateway # timeout=10
> git submodule update --init --recursive omero-weberror # timeout=10
> git submodule update --init --recursive omero-cli-render # timeout=10
> git submodule update --init --recursive omero-cli-duplicate # timeout=10
> git submodule update --init --recursive omero-metadata # timeout=10
> git submodule update --init --recursive omero-webtest # timeout=10
> git submodule update --init --recursive omero-upload # timeout=10
> git submodule update --init --recursive omero-virtual-microscope # timeout=10
> git submodule update --init --recursive omero-rois # timeout=10
> git submodule update --init --recursive omero-signup # timeout=10
> git submodule update --init --recursive omero-web-zarr # timeout=10
> git submodule update --init --recursive omero-cli-zarr # timeout=10
[Pipeline] pwd
[Pipeline] copyArtifacts
Copied 1 artifact from "OMERO-build-push" build number 48
[Pipeline] sh
+ pushd build
~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push
+ tar -zxf -
+ curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz
+ popd
~/workspace/OMERO-plugins-push
+ python3.11 -m venv build/venv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ python3.11 -m pip install -U pip
Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1)
Collecting pip
Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
Installing collected packages: pip
Attempting uninstall: pip
Found existing installation: pip 22.3.1
Uninstalling pip-22.3.1:
Successfully uninstalled pip-22.3.1
Successfully installed pip-26.2.1
+ python3.11 -m pip install scc
Collecting scc
Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB)
Collecting PyGithub>=1.54 (from scc)
Using cached pygithub-2.9.1-py3-none-any.whl.metadata (3.9 kB)
Collecting PyYAML>=5.1 (from scc)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
Collecting future (from scc)
Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting ruamel.yaml (from scc)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB)
Collecting ruamel.yaml.jinja2 (from scc)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB)
Collecting six (from scc)
Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting urllib3<2 (from scc)
Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB)
Collecting yaclifw<0.3,>=0.2.0 (from scc)
Using cached yaclifw-0.2.0-py3-none-any.whl
Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB)
Collecting requests>=2.14.0 (from PyGithub>=1.54->scc)
Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pyjwt-2.13.0-py3-none-any.whl.metadata (3.4 kB)
Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc)
Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cryptography-50.0.0-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB)
Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB)
Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc)
Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc)
Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
Using cached scc-0.20.0-py3-none-any.whl (48 kB)
Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB)
Using cached pygithub-2.9.1-py3-none-any.whl (449 kB)
Using cached pyjwt-2.13.0-py3-none-any.whl (31 kB)
Using cached cryptography-50.0.0-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB)
Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB)
Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB)
Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
Using cached requests-2.34.2-py3-none-any.whl (73 kB)
Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
Using cached idna-3.18-py3-none-any.whl (65 kB)
Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
Using cached future-1.0.0-py3-none-any.whl (491 kB)
Using cached pycparser-3.0-py3-none-any.whl (48 kB)
Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB)
Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc
Successfully installed PyGithub-2.9.1 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.4.9 cryptography-50.0.0 future-1.0.0 idna-3.18 pycparser-3.0 pyjwt-2.13.0 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0
[Pipeline] sh
+ export BASE_REPO=omero-plugins.git
+ BASE_REPO=omero-plugins.git
+ export BASE_BRANCH=master
+ BASE_BRANCH=master
+ export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv
+ . build/venv/bin/activate
++ deactivate nondestructive
++ '[' -n '' ']'
++ '[' -n '' ']'
++ hash -r
++ '[' -n '' ']'
++ unset VIRTUAL_ENV
++ unset VIRTUAL_ENV_PROMPT
++ '[' '!' nondestructive = nondestructive ']'
++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv
++ export VIRTUAL_ENV
++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
++ export PATH
++ '[' -n '' ']'
++ '[' -z '' ']'
++ _OLD_VIRTUAL_PS1=
++ PS1='(venv) '
++ export PS1
++ VIRTUAL_ENV_PROMPT='(venv) '
++ export VIRTUAL_ENV_PROMPT
++ hash -r
+ '[' merge_ci '!=' null ']'
+ export PUSH_BRANCH=merge_ci
+ PUSH_BRANCH=merge_ci
+ '[' null '!=' null ']'
+ export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment'
+ STATUS=success-only
+ MERGE_OPTIONS='-vvv --no-ask --reset --comment'
+ bash build/build-infra-master/recursive-merge
Merge base repository (no submodule updates)
2026-08-11 01:35:39,084 [ scc.config] DEBUG Found github.token
2026-08-11 01:35:39,086 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-08-11 01:35:39,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:35:40,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:35:40,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-08-11 01:35:40,712 [ scc.gh] DEBUG 4967 remaining from 5000 (Reset at 02:08
2026-08-11 01:35:40,712 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:35:40,728 [ scc.git] DEBUG Check current status
2026-08-11 01:35:40,728 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:35:40,767 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-11 01:35:40,768 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:35:40,973 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-11 01:35:41,009 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-11 01:35:41,076 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-11 01:35:41,113 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-11 01:35:41,162 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-08-11 01:35:41,198 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-11 01:35:41,252 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-11 01:35:41,334 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-08-11 01:35:41,372 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-11 01:35:41,415 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-11 01:35:41,459 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-11 01:35:41,501 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-11 01:35:41,544 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-11 01:35:41,586 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-11 01:35:41,651 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-11 01:35:41,698 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-11 01:35:41,765 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-11 01:35:41,837 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-11 01:35:41,881 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-11 01:35:41,923 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-11 01:35:41,966 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-11 01:35:41,994 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-08-11 01:35:42,012 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:35:42,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-08-11 01:35:43,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:35:43,456 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:35:43,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:35:44,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:35:44,394 [ scc.git] DEBUG Resetting...
2026-08-11 01:35:44,394 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-08-11 01:35:44,863 [ scc.git] DEBUG HEAD is now at 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-11 01:35:44,864 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-08-11 01:35:46,589 [ scc.git] DEBUG Check current status
2026-08-11 01:35:46,589 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:35:46,617 [ scc.git] DEBUG 84258d5 Merge pull request #426 from ome/dependabot/submodules/omero-prometheus-tools-eb47378
2026-08-11 01:35:46,618 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:35:46,812 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-11 01:35:46,846 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-11 01:35:46,890 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-11 01:35:46,925 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-11 01:35:46,966 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e)
2026-08-11 01:35:46,998 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-11 01:35:47,032 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-11 01:35:47,089 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46)
2026-08-11 01:35:47,120 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-11 01:35:47,152 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-11 01:35:47,187 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-11 01:35:47,217 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-11 01:35:47,250 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-11 01:35:47,279 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-11 01:35:47,315 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-11 01:35:47,350 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-11 01:35:47,388 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-11 01:35:47,421 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-11 01:35:47,452 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-11 01:35:47,485 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-11 01:35:47,520 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-11 01:35:47,547 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe)
2026-08-11 01:35:47,548 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-08-11 01:35:47,548 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-08-11 01:35:47,548 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-08-11 01:35:47,548 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-08-11 01:35:47,548 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-08-11 01:35:47,548 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:35:47,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-08-11 01:35:48,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-08-11 01:35:48,398 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:35:48,398 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-11 01:35:48,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-08-11 01:35:48,972 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:35:48,972 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-11 01:35:49,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-08-11 01:35:49,504 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:35:49,504 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-11 01:35:49,504 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:35:49,504 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:35:49,504 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:49,521 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:35:49,547 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:35:49,547 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:35:49,573 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:35:49,676 [ scc.git] DEBUG Already up to date.
2026-08-11 01:35:49,676 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-08-11 01:35:50,195 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:35:50,195 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-08-11 01:35:50,229 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-08-11 01:35:50,680 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:35:50,680 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-08-11 01:35:50,727 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-08-11 01:35:51,187 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:35:51,187 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-08-11 01:35:51,224 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:35:51,224 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:35:51,224 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:51,236 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-11 01:35:51,256 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:51,271 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-11 01:35:52,094 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:35:52,259 [ scc.git] DEBUG scripts | 2 +-
2026-08-11 01:35:52,259 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:35:52,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:35:52,478 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-11 01:35:52,510 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:52,523 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-11 01:35:53,363 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:35:53,472 [ scc.git] DEBUG omero-figure | 2 +-
2026-08-11 01:35:53,472 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:35:53,676 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:35:53,676 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-11 01:35:53,712 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:53,731 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-11 01:35:54,601 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:35:54,697 [ scc.git] DEBUG omero-iviewer | 2 +-
2026-08-11 01:35:54,697 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:35:54,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:35:54,879 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:35:56,090 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-08-11 01:35:57,549 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-08-11 01:35:58,082 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-08-11 01:35:58,083 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:35:58,083 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:35:58,095 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:36:00,496 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7f42b446c7d0> has no local changes
2026-08-11 01:36:00,496 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:36:02,158 [ scc.git] DEBUG [detached HEAD 7446a2f] merge master -Dorg -Snone
2026-08-11 01:36:02,160 [ scc.merge] INFO Repository: ome/omero-plugins
2026-08-11 01:36:02,160 [ scc.merge] INFO Already up to date.
2026-08-11 01:36:02,160 [ scc.merge] INFO
2026-08-11 01:36:02,160 [ scc.merge] INFO Merged PRs:
2026-08-11 01:36:02,160 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-11 01:36:02,160 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-11 01:36:02,160 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-11 01:36:02,160 [ scc.merge] INFO
2026-08-11 01:36:02,160 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-08-11 01:36:02,160 [ scc.git] DEBUG Calling 'git remote'
Synchronizing submodule url for 'minimal-omero-client'
Synchronizing submodule url for 'omero-cli-duplicate'
Synchronizing submodule url for 'omero-cli-render'
Synchronizing submodule url for 'omero-cli-zarr'
Synchronizing submodule url for 'omero-figure'
Synchronizing submodule url for 'omero-fpbioimage'
Synchronizing submodule url for 'omero-gallery'
Synchronizing submodule url for 'omero-iviewer'
Synchronizing submodule url for 'omero-mapr'
Synchronizing submodule url for 'omero-metadata'
Synchronizing submodule url for 'omero-parade'
Synchronizing submodule url for 'omero-prometheus-tools'
Synchronizing submodule url for 'omero-rois'
Synchronizing submodule url for 'omero-signup'
Synchronizing submodule url for 'omero-test-infra'
Synchronizing submodule url for 'omero-upload'
Synchronizing submodule url for 'omero-virtual-microscope'
Synchronizing submodule url for 'omero-web-zarr'
Synchronizing submodule url for 'omero-weberror'
Synchronizing submodule url for 'omero-webtest'
Synchronizing submodule url for 'rOMERO-gateway'
Synchronizing submodule url for 'scripts'
Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8'
From https://github.com/ome/omero-cli-zarr
+ 23822f9...a8f1a37 pre-commit-ci-update-config -> origin/pre-commit-ci-update-config (forced update)
Submodule path 'omero-cli-zarr': checked out '9f844b877d8e19e42a69d7ba43f7dc086680fbec'
Submodule path 'omero-figure': checked out '188872793f83c8a30a4cda1d0db1412c61401c00'
Submodule path 'omero-iviewer': checked out '177e4b5ec04efe2a2d2e083159f678d8bd747db3'
From https://github.com/ome/omero-metadata
55060a2..6a653e4 master -> origin/master
* [new tag] v0.14.0 -> v0.14.0
Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b'
Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959'
Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77'
Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f'
Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368'
Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0'
Merge all submodules using repository configuration:
base-branch: master
submodules:
scripts:
base-branch: develop
omero-web-zarr:
base-branch: main
2026-08-11 01:36:32,832 [ scc.config] DEBUG Found github.token
2026-08-11 01:36:32,834 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443
2026-08-11 01:36:33,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:36:33,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:36:34,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None
2026-08-11 01:36:34,098 [ scc.gh] DEBUG 4967 remaining from 5000 (Reset at 02:08
2026-08-11 01:36:34,099 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:36,039 [ scc.git] DEBUG Check current status
2026-08-11 01:36:36,040 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:36,061 [ scc.git] DEBUG 7446a2f merge master -Dorg -Snone
2026-08-11 01:36:36,062 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:36,242 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-11 01:36:36,273 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-11 01:36:36,306 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303)
2026-08-11 01:36:36,344 [ scc.git] DEBUG +9f844b877d8e19e42a69d7ba43f7dc086680fbec omero-cli-zarr (v0.8.0-1-g9f844b8)
2026-08-11 01:36:36,386 [ scc.git] DEBUG +188872793f83c8a30a4cda1d0db1412c61401c00 omero-figure (v8.0.1.rc2-14-g18887279)
2026-08-11 01:36:36,416 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-11 01:36:36,448 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-11 01:36:36,506 [ scc.git] DEBUG +177e4b5ec04efe2a2d2e083159f678d8bd747db3 omero-iviewer (v0.18.0-1-g177e4b5e)
2026-08-11 01:36:36,544 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-11 01:36:36,586 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4)
2026-08-11 01:36:36,617 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-11 01:36:36,655 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-11 01:36:36,689 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96)
2026-08-11 01:36:36,724 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-11 01:36:36,764 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015)
2026-08-11 01:36:36,800 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-11 01:36:36,835 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894)
2026-08-11 01:36:36,869 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685)
2026-08-11 01:36:36,902 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-11 01:36:36,940 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-11 01:36:36,980 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-11 01:36:37,006 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768)
2026-08-11 01:36:37,019 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:37,019 [ scc.git] DEBUG Reading repository configuration from repositories.yml
2026-08-11 01:36:37,022 [ scc.git] DEBUG Repository configuration:
base-branch: master
submodules:
omero-web-zarr:
base-branch: main
scripts:
base-branch: develop
2026-08-11 01:36:37,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None
2026-08-11 01:36:37,868 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:38,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:38,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:39,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:39,262 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:39,452 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-11 01:36:39,453 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:39,466 [ scc.git] DEBUG Check current status
2026-08-11 01:36:39,466 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:39,488 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0
2026-08-11 01:36:39,489 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:39,614 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:39,920 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None
2026-08-11 01:36:40,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:40,879 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:41,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:41,837 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:41,838 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:41,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:41,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-11 01:36:41,955 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:41,969 [ scc.git] DEBUG Check current status
2026-08-11 01:36:41,969 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:41,989 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build
2026-08-11 01:36:41,990 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:42,105 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:42,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None
2026-08-11 01:36:42,950 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:43,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:43,921 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:44,385 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:44,386 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:44,506 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:44,507 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-11 01:36:44,507 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:44,519 [ scc.git] DEBUG Check current status
2026-08-11 01:36:44,520 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:44,539 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease
2026-08-11 01:36:44,540 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:44,664 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:44,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None
2026-08-11 01:36:45,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:46,110 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:46,719 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:47,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:47,175 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:47,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:47,289 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-11 01:36:47,289 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:47,302 [ scc.git] DEBUG Check current status
2026-08-11 01:36:47,302 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:47,334 [ scc.git] DEBUG 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0
2026-08-11 01:36:47,335 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:47,458 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:47,804 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None
2026-08-11 01:36:48,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:48,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:49,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:49,661 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:49,663 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:49,783 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:49,783 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-11 01:36:49,784 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:49,799 [ scc.git] DEBUG Check current status
2026-08-11 01:36:49,799 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:49,821 [ scc.git] DEBUG 18887279 Merge pull request #693 from ome/dependabot/npm_and_yarn/dompurify-3.4.9
2026-08-11 01:36:49,823 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:49,953 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:50,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None
2026-08-11 01:36:50,774 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:51,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:51,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:52,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:52,159 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:52,275 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:52,276 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-11 01:36:52,276 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:52,290 [ scc.git] DEBUG Check current status
2026-08-11 01:36:52,290 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:52,309 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build
2026-08-11 01:36:52,309 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:52,433 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:52,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None
2026-08-11 01:36:53,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:53,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:54,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:54,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:54,616 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:54,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:54,735 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-11 01:36:54,735 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:54,750 [ scc.git] DEBUG Check current status
2026-08-11 01:36:54,750 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:54,772 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build
2026-08-11 01:36:54,773 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:54,900 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:55,209 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None
2026-08-11 01:36:55,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:56,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:56,615 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:57,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:57,062 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:57,171 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:57,172 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-11 01:36:57,172 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:57,185 [ scc.git] DEBUG Check current status
2026-08-11 01:36:57,185 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:57,213 [ scc.git] DEBUG 177e4b5e add dev
2026-08-11 01:36:57,215 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:36:57,336 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:36:57,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None
2026-08-11 01:36:58,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:36:58,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:36:59,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:36:59,835 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:36:59,836 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:36:59,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:36:59,955 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-11 01:36:59,955 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:36:59,970 [ scc.git] DEBUG Check current status
2026-08-11 01:36:59,970 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:36:59,993 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0
2026-08-11 01:36:59,994 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:00,122 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:00,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None
2026-08-11 01:37:00,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:01,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:01,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:02,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:02,400 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:02,516 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:02,517 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-11 01:37:02,517 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:02,533 [ scc.git] DEBUG Check current status
2026-08-11 01:37:02,533 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:02,558 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation
2026-08-11 01:37:02,559 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:02,687 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:02,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None
2026-08-11 01:37:03,511 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:03,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:04,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:04,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:04,897 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:05,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:05,010 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-11 01:37:05,010 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:05,023 [ scc.git] DEBUG Check current status
2026-08-11 01:37:05,023 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:05,043 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build
2026-08-11 01:37:05,044 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:05,159 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:05,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None
2026-08-11 01:37:05,996 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:06,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:06,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:07,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:07,369 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:07,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:07,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-11 01:37:07,500 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:07,517 [ scc.git] DEBUG Check current status
2026-08-11 01:37:07,517 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:07,537 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build
2026-08-11 01:37:07,538 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:07,658 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:07,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None
2026-08-11 01:37:08,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:08,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:09,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:09,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:09,872 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:09,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:09,979 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-11 01:37:09,980 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:09,994 [ scc.git] DEBUG Check current status
2026-08-11 01:37:09,994 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:10,014 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0
2026-08-11 01:37:10,016 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:10,148 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:10,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None
2026-08-11 01:37:10,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:11,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:12,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:12,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:12,527 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:12,641 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:12,642 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-11 01:37:12,643 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:12,657 [ scc.git] DEBUG Check current status
2026-08-11 01:37:12,657 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:12,681 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build
2026-08-11 01:37:12,682 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:12,797 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:13,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None
2026-08-11 01:37:13,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:14,133 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:14,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:15,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:15,037 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:15,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:15,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-11 01:37:15,157 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:15,170 [ scc.git] DEBUG Check current status
2026-08-11 01:37:15,170 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:15,192 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme
2026-08-11 01:37:15,193 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:15,308 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:15,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-11 01:37:15,498 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-11 01:37:15,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None
2026-08-11 01:37:16,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:16,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:17,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:17,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:17,847 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:17,981 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:17,982 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-11 01:37:17,983 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:17,999 [ scc.git] DEBUG Check current status
2026-08-11 01:37:17,999 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:18,019 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build
2026-08-11 01:37:18,020 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:18,155 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:18,453 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None
2026-08-11 01:37:18,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:19,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:19,849 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:20,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:20,293 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:20,412 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:20,413 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-11 01:37:20,413 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:20,428 [ scc.git] DEBUG Check current status
2026-08-11 01:37:20,429 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:20,450 [ scc.git] DEBUG 160d894 Fix display of code
2026-08-11 01:37:20,451 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:20,573 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:20,855 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None
2026-08-11 01:37:21,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:21,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:22,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:22,893 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:22,894 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:23,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:23,011 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-11 01:37:23,012 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:23,025 [ scc.git] DEBUG Check current status
2026-08-11 01:37:23,025 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:23,044 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-08-11 01:37:23,045 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:23,167 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:23,168 [ scc.git] DEBUG Repository configuration:
base-branch: main
2026-08-11 01:37:23,475 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None
2026-08-11 01:37:24,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:24,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:24,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:25,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:25,390 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:25,510 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:25,511 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-11 01:37:25,512 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:25,526 [ scc.git] DEBUG Check current status
2026-08-11 01:37:25,526 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:25,546 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build
2026-08-11 01:37:25,547 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:25,658 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:25,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-11 01:37:25,878 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-11 01:37:26,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None
2026-08-11 01:37:26,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:27,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:27,631 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:28,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:28,098 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:28,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:28,219 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-11 01:37:28,220 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:28,235 [ scc.git] DEBUG Check current status
2026-08-11 01:37:28,235 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:28,256 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build
2026-08-11 01:37:28,257 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:28,378 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:28,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-11 01:37:28,605 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-11 01:37:28,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None
2026-08-11 01:37:29,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:29,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:30,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:30,795 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:30,796 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:30,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:30,913 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-11 01:37:30,914 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:30,930 [ scc.git] DEBUG Check current status
2026-08-11 01:37:30,930 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:30,951 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2
2026-08-11 01:37:30,953 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:31,076 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:31,394 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None
2026-08-11 01:37:31,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:32,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:32,801 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:33,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:33,247 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:33,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:33,359 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-11 01:37:33,360 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel'
2026-08-11 01:37:33,373 [ scc.git] DEBUG Check current status
2026-08-11 01:37:33,373 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:33,394 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0
2026-08-11 01:37:33,395 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:33,514 [ scc.config] DEBUG Found remote.origin.url
2026-08-11 01:37:33,515 [ scc.git] DEBUG Repository configuration:
base-branch: develop
2026-08-11 01:37:33,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-11 01:37:33,709 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-11 01:37:34,017 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None
2026-08-11 01:37:34,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None
2026-08-11 01:37:34,984 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None
2026-08-11 01:37:35,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None
2026-08-11 01:37:35,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None
2026-08-11 01:37:35,879 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:37:35,988 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:37:35,988 [ scc.git] DEBUG Resetting...
2026-08-11 01:37:35,988 [ scc.git] DEBUG Calling 'git reset --hard HEAD'
2026-08-11 01:37:36,333 [ scc.git] DEBUG HEAD is now at 7446a2f merge master -Dorg -Snone
2026-08-11 01:37:36,334 [ scc.git] DEBUG Calling 'git submodule update --recursive'
2026-08-11 01:37:36,769 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264'
2026-08-11 01:37:37,170 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62'
2026-08-11 01:37:38,282 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96'
2026-08-11 01:37:39,322 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052'
2026-08-11 01:37:39,800 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997'
2026-08-11 01:37:40,244 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9'
2026-08-11 01:37:40,644 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73'
2026-08-11 01:37:40,946 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743'
2026-08-11 01:37:41,260 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041'
2026-08-11 01:37:41,807 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867'
2026-08-11 01:37:41,832 [ scc.git] DEBUG Check current status
2026-08-11 01:37:41,832 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD'
2026-08-11 01:37:41,856 [ scc.git] DEBUG 7446a2f merge master -Dorg -Snone
2026-08-11 01:37:41,856 [ scc.git] DEBUG Calling 'git submodule status'
2026-08-11 01:37:42,059 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master)
2026-08-11 01:37:42,093 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8)
2026-08-11 01:37:42,130 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c)
2026-08-11 01:37:42,185 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587)
2026-08-11 01:37:42,232 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde)
2026-08-11 01:37:42,270 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a)
2026-08-11 01:37:42,310 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da)
2026-08-11 01:37:42,374 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee)
2026-08-11 01:37:42,414 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da)
2026-08-11 01:37:42,460 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c)
2026-08-11 01:37:42,498 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86)
2026-08-11 01:37:42,536 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378)
2026-08-11 01:37:42,572 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e)
2026-08-11 01:37:42,611 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813)
2026-08-11 01:37:42,893 [ scc.merge] INFO Merging Pull Request(s) based on master
2026-08-11 01:37:54,663 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6)
2026-08-11 01:37:54,666 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization
2026-08-11 01:37:54,666 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae)
2026-08-11 01:37:54,666 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies
2026-08-11 01:37:54,666 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817)
2026-08-11 01:37:54,667 [ scc.merge] INFO Excluding Pull Request(s) staged as draft
2026-08-11 01:37:54,667 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313)
2026-08-11 01:37:54,667 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking
2026-08-11 01:37:54,667 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed)
2026-08-11 01:37:54,667 [ scc.merge] INFO Excluding Pull Request(s) without successful status
2026-08-11 01:37:54,667 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29)
2026-08-11 01:37:54,667 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:37:54,667 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d)
2026-08-11 01:37:54,668 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755)
2026-08-11 01:37:54,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None
2026-08-11 01:37:55,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None
2026-08-11 01:37:55,506 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:37:56,249 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-08-11 01:37:56,741 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:37:57,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None
2026-08-11 01:37:57,697 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:37:57,698 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-11 01:37:58,217 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None
2026-08-11 01:37:58,218 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:37:58,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-08-11 01:37:59,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:00,076 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:00,552 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:38:00,552 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-11 01:38:01,247 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None
2026-08-11 01:38:01,247 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:38:01,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:02,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:02,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:03,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:38:03,484 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-11 01:38:03,484 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:38:03,484 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:03,484 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:03,497 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:38:03,528 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:38:03,529 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:38:03,554 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:38:03,612 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:03,612 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head'
2026-08-11 01:38:04,111 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:38:04,111 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD
2026-08-11 01:38:04,139 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head'
2026-08-11 01:38:04,606 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:38:04,606 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD
2026-08-11 01:38:04,633 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head'
2026-08-11 01:38:05,100 [ scc.git] DEBUG From https://github.com/ome/omero-plugins
2026-08-11 01:38:05,100 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD
2026-08-11 01:38:05,125 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:38:05,125 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:05,125 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:05,135 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-11 01:38:05,160 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:05,170 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2'
2026-08-11 01:38:05,226 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:05,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:38:05,452 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-11 01:38:05,477 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:05,487 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51'
2026-08-11 01:38:05,531 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:05,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:38:05,901 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-11 01:38:05,923 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:05,933 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74'
2026-08-11 01:38:05,973 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:06,340 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:38:06,340 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:38:07,068 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:07,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:07,079 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:38:07,309 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2
2026-08-11 01:38:07,310 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:38:07,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-11 01:38:07,310 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:07,310 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:07,326 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:38:07,345 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:38:07,345 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:38:07,366 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:38:07,428 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:07,428 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:38:07,428 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:07,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:07,446 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:38:07,564 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:07,564 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:07,579 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:38:07,689 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:38:07,746 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff150334450> has no local changes
2026-08-11 01:38:07,747 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/minimal-omero-client
Already up to date.
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:38:07,963 [ scc.git] DEBUG [detached HEAD 8552906] merge master -Dorg -Ssuccess-only
2026-08-11 01:38:07,965 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:38:07,965 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:38:08,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None
2026-08-11 01:38:08,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None
2026-08-11 01:38:08,876 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:38:09,624 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:10,190 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:10,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:11,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:11,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:38:11,712 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:38:12,204 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None
2026-08-11 01:38:12,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None
2026-08-11 01:38:14,211 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:38:14,213 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-11 01:38:14,217 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:14,217 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:14,236 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:38:14,254 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:38:14,254 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:38:14,273 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:38:14,333 [ scc.git] DEBUG Already up to date.
2026-08-11 01:38:14,333 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head'
2026-08-11 01:38:14,810 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate
2026-08-11 01:38:14,810 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD
2026-08-11 01:38:14,836 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:38:14,836 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:14,836 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:14,852 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-08-11 01:38:14,873 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:14,888 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4'
2026-08-11 01:38:15,054 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:38:15,121 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:38:15,121 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:38:15,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:38:15,313 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:38:15,428 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:15,428 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:15,442 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:38:15,548 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:38:15,706 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15067d390> has no local changes
2026-08-11 01:38:15,706 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:38:15,901 [ scc.git] DEBUG [detached HEAD 882a5ab] merge master -Dorg -Ssuccess-only
2026-08-11 01:38:15,903 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:38:15,903 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:38:16,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None
2026-08-11 01:38:16,805 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None
2026-08-11 01:38:17,320 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None
2026-08-11 01:38:17,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:18,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:18,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:19,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:19,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:38:19,890 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate'
2026-08-11 01:38:20,363 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None
2026-08-11 01:38:20,845 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None
2026-08-11 01:38:20,846 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:38:20,846 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-11 01:38:20,846 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:20,846 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:20,866 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:38:20,886 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:38:20,886 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:38:20,913 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:38:21,109 [ scc.git] DEBUG Updating ce6e13c..68b7303
2026-08-11 01:38:21,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None
2026-08-11 01:38:22,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None
2026-08-11 01:38:23,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None
2026-08-11 01:38:24,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None
2026-08-11 01:38:24,087 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head'
2026-08-11 01:38:24,922 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render
2026-08-11 01:38:24,922 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD
2026-08-11 01:38:24,953 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:38:24,953 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:24,954 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:24,972 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-08-11 01:38:25,024 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:25,040 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99'
2026-08-11 01:38:25,289 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py
2026-08-11 01:38:25,438 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:38:25,525 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++--------------------
2026-08-11 01:38:25,525 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-)
2026-08-11 01:38:25,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:38:25,703 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:38:25,833 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:25,833 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:25,850 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:38:25,965 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:38:26,054 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff152c7c110> has no local changes
2026-08-11 01:38:26,054 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:38:26,222 [ scc.git] DEBUG [detached HEAD eca8760] merge master -Dorg -Ssuccess-only
2026-08-11 01:38:26,224 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:38:26,224 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:38:26,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None
2026-08-11 01:38:27,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/196 HTTP/1.1" 200 None
2026-08-11 01:38:27,685 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:28,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:28,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:29,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:29,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/eeaeaa9e3789fce6809def20cd9a43f37f61668f?per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:30,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:30,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/eeaeaa9e3789fce6809def20cd9a43f37f61668f/status HTTP/1.1" 200 None
2026-08-11 01:38:30,709 [ scc.repo] DEBUG - PR 196 will-moore 'Storage options only if needed'
2026-08-11 01:38:31,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/194 HTTP/1.1" 200 None
2026-08-11 01:38:31,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:32,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:32,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/ef80eaa948230c5f2afbce83f2699de62430ca6b/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:33,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/193 HTTP/1.1" 200 None
2026-08-11 01:38:34,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:34,616 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:35,129 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:35,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:36,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:36,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:37,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c/status HTTP/1.1" 200 None
2026-08-11 01:38:37,296 [ scc.repo] DEBUG - PR 193 dominikl 'Only parse import uris if stated'
2026-08-11 01:38:37,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182 HTTP/1.1" 200 None
2026-08-11 01:38:38,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/182/comments HTTP/1.1" 200 None
2026-08-11 01:38:38,870 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:39,416 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:39,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:40,358 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:40,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:41,350 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:42,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac/status HTTP/1.1" 200 None
2026-08-11 01:38:42,037 [ scc.repo] DEBUG - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-08-11 01:38:42,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181 HTTP/1.1" 200 None
2026-08-11 01:38:43,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/181/comments HTTP/1.1" 200 None
2026-08-11 01:38:43,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None
2026-08-11 01:38:44,065 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None
2026-08-11 01:38:44,639 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:45,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:45,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:46,160 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:46,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:47,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:47,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None
2026-08-11 01:38:47,686 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-08-11 01:38:48,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None
2026-08-11 01:38:48,704 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None
2026-08-11 01:38:49,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:49,807 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:50,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:38:50,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:51,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None
2026-08-11 01:38:51,964 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None
2026-08-11 01:38:52,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None
2026-08-11 01:38:52,464 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells'
2026-08-11 01:38:52,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/170 HTTP/1.1" 200 None
2026-08-11 01:38:53,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None
2026-08-11 01:38:54,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None
2026-08-11 01:38:54,534 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None
2026-08-11 01:38:55,106 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None
2026-08-11 01:38:55,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None
2026-08-11 01:38:55,628 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:38:55,628 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-11 01:38:55,630 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:38:55,630 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:38:55,660 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:38:55,679 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:38:55,679 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:38:55,726 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:38:56,167 [ scc.git] DEBUG Updating 11d3587..9f844b8
2026-08-11 01:38:56,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None
2026-08-11 01:38:57,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None
2026-08-11 01:38:58,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None
2026-08-11 01:38:59,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None
2026-08-11 01:39:00,724 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None
2026-08-11 01:39:01,583 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None
2026-08-11 01:39:02,400 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None
2026-08-11 01:39:03,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None
2026-08-11 01:39:04,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None
2026-08-11 01:39:04,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None
2026-08-11 01:39:05,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None
2026-08-11 01:39:06,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None
2026-08-11 01:39:06,543 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head'
2026-08-11 01:39:07,424 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-11 01:39:07,424 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD
2026-08-11 01:39:07,449 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head'
2026-08-11 01:39:08,112 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-11 01:39:08,112 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD
2026-08-11 01:39:08,142 [ scc.git] DEBUG Calling 'git fetch origin pull/182/head'
2026-08-11 01:39:08,721 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-11 01:39:08,721 [ scc.git] DEBUG * branch refs/pull/182/head -> FETCH_HEAD
2026-08-11 01:39:08,747 [ scc.git] DEBUG Calling 'git fetch origin pull/193/head'
2026-08-11 01:39:09,209 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-11 01:39:09,209 [ scc.git] DEBUG * branch refs/pull/193/head -> FETCH_HEAD
2026-08-11 01:39:09,238 [ scc.git] DEBUG Calling 'git fetch origin pull/196/head'
2026-08-11 01:39:09,891 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr
2026-08-11 01:39:09,891 [ scc.git] DEBUG * branch refs/pull/196/head -> FETCH_HEAD
2026-08-11 01:39:09,920 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:39:09,920 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:39:09,920 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:09,937 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-11 01:39:10,004 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:10,019 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging README.rst
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-08-11 01:39:10,437 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-08-11 01:39:10,462 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:39:10,463 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:39:10,519 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:10,720 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0
2026-08-11 01:39:10,929 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:39:10,930 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec e795ce506487fad5c1184c909aaa1dab9a30401c'
2026-08-11 01:39:10,974 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:10,996 [ scc.git] INFO - PR 174 will-moore 'Skip wells'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_zarr/raw_pixels.py
- src/omero_zarr/cli.py
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
- src/omero_zarr/util.py
--conflicts
2026-08-11 01:39:11,009 [ scc.config] DEBUG Found github.token
2026-08-11 01:39:11,010 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts.
2026-08-11 01:39:11,010 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-11 01:39:11,057 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:11,073 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-11 01:39:11,291 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py
2026-08-11 01:39:11,291 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py
2026-08-11 01:39:11,291 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py
2026-08-11 01:39:11,291 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py
2026-08-11 01:39:11,314 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:39:11,315 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:39:11,349 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:11,489 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0
2026-08-11 01:39:11,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:39:11,679 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec f99a6a6869bf6259376adaea157f24955c9aa3ae'
2026-08-11 01:39:11,715 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:11,738 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #174 will-moore 'Skip wells'
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
- Upstream changes
- src/omero_zarr/masks.py
- test/integration/clitest/test_export.py
--conflicts
2026-08-11 01:39:11,751 [ scc.config] DEBUG Found github.token
2026-08-11 01:39:11,751 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts.
2026-08-11 01:39:11,751 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-11 01:39:11,785 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:11,800 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 182 (Revert "Remove support for Plate import") cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-11 01:39:12,047 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py
2026-08-11 01:39:12,048 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py
2026-08-11 01:39:12,048 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/zarr_import.py
2026-08-11 01:39:12,048 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_import.py
2026-08-11 01:39:12,048 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_import.py
2026-08-11 01:39:12,070 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:39:12,071 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:39:12,100 [ scc.git] DEBUG Calling 'git reset --hard 9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:12,249 [ scc.git] DEBUG HEAD is now at 9f844b8 Bump version: 0.8.0 → 0.8.1.dev0
2026-08-11 01:39:12,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:39:12,428 [ scc.git] DEBUG Calling 'git merge-base 9f844b877d8e19e42a69d7ba43f7dc086680fbec cf8a0f8c42b06a18d190b2e9fd8746bf98c205ac'
2026-08-11 01:39:12,460 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..9f844b877d8e19e42a69d7ba43f7dc086680fbec'
2026-08-11 01:39:12,481 [ scc.git] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_zarr/zarr_import.py
- test/integration/clitest/test_import.py
--conflicts
2026-08-11 01:39:12,494 [ scc.config] DEBUG Found github.token
2026-08-11 01:39:12,494 [ scc.git] DEBUG Not adding comment to issue #182, already --conflicts.
2026-08-11 01:39:12,494 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c'
2026-08-11 01:39:12,525 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:12,541 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 193 (Only parse import uris if stated) bc5ed7a716bc6c0bbb06ed22e94f28f55e03920c'
2026-08-11 01:39:12,762 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:39:12,828 [ scc.git] DEBUG src/omero_zarr/cli.py | 8 ++++++++
2026-08-11 01:39:12,828 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 40 +++++++++++++++++++++-------------------
2026-08-11 01:39:12,828 [ scc.git] DEBUG 2 files changed, 29 insertions(+), 19 deletions(-)
2026-08-11 01:39:13,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:39:13,033 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...eeaeaa9e3789fce6809def20cd9a43f37f61668f'
2026-08-11 01:39:13,080 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:13,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 196 (Storage options only if needed) eeaeaa9e3789fce6809def20cd9a43f37f61668f'
2026-08-11 01:39:13,457 [ scc.git] DEBUG Auto-merging src/omero_zarr/zarr_import.py
2026-08-11 01:39:13,586 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:39:13,667 [ scc.git] DEBUG .pre-commit-config.yaml | 2 +-
2026-08-11 01:39:13,667 [ scc.git] DEBUG src/omero_zarr/masks.py | 10 ++++++++++
2026-08-11 01:39:13,667 [ scc.git] DEBUG src/omero_zarr/raw_pixels.py | 6 ++----
2026-08-11 01:39:13,667 [ scc.git] DEBUG src/omero_zarr/zarr_import.py | 3 ++-
2026-08-11 01:39:13,667 [ scc.git] DEBUG test/integration/clitest/test_export.py | 2 +-
2026-08-11 01:39:13,667 [ scc.git] DEBUG 5 files changed, 16 insertions(+), 7 deletions(-)
2026-08-11 01:39:13,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:39:13,867 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:39:13,995 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:39:13,995 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:14,012 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:39:14,133 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:39:14,207 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff150659dd0> has no local changes
2026-08-11 01:39:14,208 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 196 will-moore 'Storage options only if needed'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:39:14,377 [ scc.git] DEBUG [detached HEAD 8bd52a9] merge master -Dorg -Ssuccess-only
2026-08-11 01:39:14,378 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:39:14,379 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:39:14,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None
2026-08-11 01:39:15,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/698 HTTP/1.1" 200 None
2026-08-11 01:39:15,301 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:39:15,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ce89c953af635d491f69e03fb4929aac50d89b1b?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:16,515 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ce89c953af635d491f69e03fb4929aac50d89b1b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:39:17,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ce89c953af635d491f69e03fb4929aac50d89b1b/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:39:17,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/ce89c953af635d491f69e03fb4929aac50d89b1b?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:18,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/ce89c953af635d491f69e03fb4929aac50d89b1b?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:39:18,048 [ scc.repo] DEBUG - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-08-11 01:39:18,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/697 HTTP/1.1" 200 None
2026-08-11 01:39:18,550 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:39:19,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e22b8589ae3295c8a4cd88df953c991f41074487?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:20,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e22b8589ae3295c8a4cd88df953c991f41074487/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:39:20,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e22b8589ae3295c8a4cd88df953c991f41074487/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:39:21,117 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e22b8589ae3295c8a4cd88df953c991f41074487?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:21,575 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e22b8589ae3295c8a4cd88df953c991f41074487?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:39:21,576 [ scc.repo] DEBUG - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-08-11 01:39:22,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/695 HTTP/1.1" 200 None
2026-08-11 01:39:22,142 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:39:22,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6a1c677b187fbe3fefabeebba659660e1c08dad8?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:23,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6a1c677b187fbe3fefabeebba659660e1c08dad8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:39:23,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6a1c677b187fbe3fefabeebba659660e1c08dad8/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:39:24,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/6a1c677b187fbe3fefabeebba659660e1c08dad8?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:24,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/6a1c677b187fbe3fefabeebba659660e1c08dad8?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:39:24,816 [ scc.repo] DEBUG - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-08-11 01:39:25,330 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/692 HTTP/1.1" 200 None
2026-08-11 01:39:25,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/123f30064dc116c09098786206e54f8ec811c2c2?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:26,399 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/123f30064dc116c09098786206e54f8ec811c2c2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:39:26,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/123f30064dc116c09098786206e54f8ec811c2c2/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:39:27,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/123f30064dc116c09098786206e54f8ec811c2c2?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:27,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/123f30064dc116c09098786206e54f8ec811c2c2?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:39:27,831 [ scc.repo] DEBUG - PR 692 will-moore 'colorbar lut background fix'
2026-08-11 01:39:28,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652 HTTP/1.1" 200 None
2026-08-11 01:39:28,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/652/comments HTTP/1.1" 200 None
2026-08-11 01:39:28,861 [ scc.repo] DEBUG # ... Include label: include
2026-08-11 01:39:29,614 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:30,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:39:30,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:39:31,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/e4dd3031a6f8b0295d88c5a27d510e2ead252234?page=1 HTTP/1.1" 200 None
2026-08-11 01:39:31,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/e4dd3031a6f8b0295d88c5a27d510e2ead252234?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:39:31,577 [ scc.repo] DEBUG - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-08-11 01:39:31,577 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:39:31,577 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-11 01:39:31,579 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:39:31,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:39:31,604 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:39:31,631 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:39:31,631 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:39:31,799 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:39:33,300 [ scc.git] ERROR stderr (git merge --ff-only origin/master): Updating files: 98% (81/82)
Updating files: 100% (82/82)
Updating files: 100% (82/82), done.
2026-08-11 01:39:33,300 [ scc.git] DEBUG Updating 9cc36cde..18887279
2026-08-11 01:39:33,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None
2026-08-11 01:39:34,535 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None
2026-08-11 01:39:35,474 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None
2026-08-11 01:39:36,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None
2026-08-11 01:39:37,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None
2026-08-11 01:39:37,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None
2026-08-11 01:39:38,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None
2026-08-11 01:39:39,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None
2026-08-11 01:39:40,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None
2026-08-11 01:39:41,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None
2026-08-11 01:39:42,440 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None
2026-08-11 01:39:43,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None
2026-08-11 01:39:44,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None
2026-08-11 01:39:44,952 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None
2026-08-11 01:39:45,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None
2026-08-11 01:39:46,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None
2026-08-11 01:39:47,324 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None
2026-08-11 01:39:48,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None
2026-08-11 01:39:48,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None
2026-08-11 01:39:49,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None
2026-08-11 01:39:50,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None
2026-08-11 01:39:51,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None
2026-08-11 01:39:52,256 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None
2026-08-11 01:39:53,123 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None
2026-08-11 01:39:54,043 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None
2026-08-11 01:39:54,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None
2026-08-11 01:39:55,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None
2026-08-11 01:39:56,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None
2026-08-11 01:39:57,397 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None
2026-08-11 01:39:58,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None
2026-08-11 01:39:59,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None
2026-08-11 01:39:59,900 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None
2026-08-11 01:40:00,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None
2026-08-11 01:40:02,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None
2026-08-11 01:40:03,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None
2026-08-11 01:40:04,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None
2026-08-11 01:40:04,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None
2026-08-11 01:40:05,779 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None
2026-08-11 01:40:06,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None
2026-08-11 01:40:07,392 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None
2026-08-11 01:40:08,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None
2026-08-11 01:40:09,271 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None
2026-08-11 01:40:10,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None
2026-08-11 01:40:11,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None
2026-08-11 01:40:12,098 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None
2026-08-11 01:40:13,033 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None
2026-08-11 01:40:13,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None
2026-08-11 01:40:14,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None
2026-08-11 01:40:15,442 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None
2026-08-11 01:40:16,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None
2026-08-11 01:40:16,270 [ scc.git] DEBUG Calling 'git fetch origin pull/652/head'
2026-08-11 01:40:17,030 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-08-11 01:40:17,031 [ scc.git] DEBUG * branch refs/pull/652/head -> FETCH_HEAD
2026-08-11 01:40:17,057 [ scc.git] DEBUG Calling 'git fetch origin pull/692/head'
2026-08-11 01:40:17,576 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-08-11 01:40:17,576 [ scc.git] DEBUG * branch refs/pull/692/head -> FETCH_HEAD
2026-08-11 01:40:17,601 [ scc.git] DEBUG Calling 'git fetch origin pull/695/head'
2026-08-11 01:40:18,279 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-08-11 01:40:18,279 [ scc.git] DEBUG * branch refs/pull/695/head -> FETCH_HEAD
2026-08-11 01:40:18,304 [ scc.git] DEBUG Calling 'git fetch origin pull/697/head'
2026-08-11 01:40:18,796 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-08-11 01:40:18,797 [ scc.git] DEBUG * branch refs/pull/697/head -> FETCH_HEAD
2026-08-11 01:40:18,822 [ scc.git] DEBUG Calling 'git fetch origin pull/698/head'
2026-08-11 01:40:19,314 [ scc.git] DEBUG From https://github.com/ome/omero-figure
2026-08-11 01:40:19,314 [ scc.git] DEBUG * branch refs/pull/698/head -> FETCH_HEAD
2026-08-11 01:40:19,338 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:40:19,338 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:19,338 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:19,359 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e4dd3031a6f8b0295d88c5a27d510e2ead252234'
2026-08-11 01:40:19,460 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:19,475 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 652 (Add export option for PNG (72 dpi), fixes #394 ) e4dd3031a6f8b0295d88c5a27d510e2ead252234'
2026-08-11 01:40:19,882 [ scc.git] DEBUG Auto-merging omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
2026-08-11 01:40:19,882 [ scc.git] DEBUG Auto-merging src/index.html
2026-08-11 01:40:19,882 [ scc.git] DEBUG Auto-merging src/js/views/figure_view.js
2026-08-11 01:40:19,957 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:20,042 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 163 ++++++++++++++++++++-
2026-08-11 01:40:20,042 [ scc.git] DEBUG src/index.html | 11 ++
2026-08-11 01:40:20,042 [ scc.git] DEBUG src/js/views/figure_view.js | 1 +
2026-08-11 01:40:20,042 [ scc.git] DEBUG 3 files changed, 172 insertions(+), 3 deletions(-)
2026-08-11 01:40:20,246 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:20,246 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...123f30064dc116c09098786206e54f8ec811c2c2'
2026-08-11 01:40:20,305 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:20,321 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 692 (colorbar lut background fix) 123f30064dc116c09098786206e54f8ec811c2c2'
2026-08-11 01:40:20,580 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:20,663 [ scc.git] DEBUG src/js/views/panel_view.js | 5 +++++
2026-08-11 01:40:20,663 [ scc.git] DEBUG src/templates/colorbar.template.html | 2 +-
2026-08-11 01:40:20,663 [ scc.git] DEBUG 2 files changed, 6 insertions(+), 1 deletion(-)
2026-08-11 01:40:20,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:20,851 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a1c677b187fbe3fefabeebba659660e1c08dad8'
2026-08-11 01:40:20,916 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:20,932 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 695 (Bump immutable from 5.1.6 to 5.1.9) 6a1c677b187fbe3fefabeebba659660e1c08dad8'
2026-08-11 01:40:21,240 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:21,324 [ scc.git] DEBUG package-lock.json | 6 +++---
2026-08-11 01:40:21,324 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-08-11 01:40:21,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:21,525 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e22b8589ae3295c8a4cd88df953c991f41074487'
2026-08-11 01:40:21,603 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:21,620 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 697 (Bump postcss from 8.5.15 to 8.5.25) e22b8589ae3295c8a4cd88df953c991f41074487'
2026-08-11 01:40:21,822 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:40:21,902 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:21,973 [ scc.git] DEBUG package-lock.json | 14 +++++++-------
2026-08-11 01:40:21,973 [ scc.git] DEBUG 1 file changed, 7 insertions(+), 7 deletions(-)
2026-08-11 01:40:22,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:22,175 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ce89c953af635d491f69e03fb4929aac50d89b1b'
2026-08-11 01:40:22,241 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:22,256 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 698 (Bump dompurify from 3.4.9 to 3.4.13) ce89c953af635d491f69e03fb4929aac50d89b1b'
2026-08-11 01:40:22,454 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:40:22,530 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:22,608 [ scc.git] DEBUG package-lock.json | 8 ++++----
2026-08-11 01:40:22,608 [ scc.git] DEBUG package.json | 2 +-
2026-08-11 01:40:22,608 [ scc.git] DEBUG 2 files changed, 5 insertions(+), 5 deletions(-)
2026-08-11 01:40:22,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:22,816 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:40:22,980 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:22,980 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:22,997 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:40:23,105 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:40:23,227 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff150185790> has no local changes
2026-08-11 01:40:23,227 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-figure
Updating 9cc36cde..18887279
Previously merged:
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 692 will-moore 'colorbar lut background fix'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:40:23,413 [ scc.git] DEBUG [detached HEAD 1742ec84] merge master -Dorg -Ssuccess-only
2026-08-11 01:40:23,415 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:40:23,415 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:40:23,776 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None
2026-08-11 01:40:24,332 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None
2026-08-11 01:40:24,333 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:25,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:25,626 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:26,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:40:26,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:27,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:27,149 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:40:27,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None
2026-08-11 01:40:28,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None
2026-08-11 01:40:28,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:29,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:29,716 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:30,169 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:30,169 [ scc.repo] DEBUG - PR 18 jburel 'default size z value'
2026-08-11 01:40:30,170 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:40:30,170 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-11 01:40:30,171 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:30,171 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:30,196 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:40:30,221 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:40:30,222 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:40:30,249 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:40:30,316 [ scc.git] DEBUG Already up to date.
2026-08-11 01:40:30,316 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head'
2026-08-11 01:40:30,825 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-08-11 01:40:30,825 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD
2026-08-11 01:40:30,851 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head'
2026-08-11 01:40:31,310 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage
2026-08-11 01:40:31,310 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD
2026-08-11 01:40:31,334 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:40:31,334 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:31,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:31,351 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-08-11 01:40:31,383 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:31,400 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337'
2026-08-11 01:40:31,656 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py
2026-08-11 01:40:31,795 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:31,863 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++
2026-08-11 01:40:31,863 [ scc.git] DEBUG 1 file changed, 2 insertions(+)
2026-08-11 01:40:32,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:32,069 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-08-11 01:40:32,101 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:32,117 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c'
2026-08-11 01:40:32,313 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:32,385 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:40:32,385 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:40:32,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:32,577 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:40:32,706 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:32,706 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:32,722 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:40:32,830 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:40:32,889 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15016fd90> has no local changes
2026-08-11 01:40:32,889 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:40:33,090 [ scc.git] DEBUG [detached HEAD c98154e] merge master -Dorg -Ssuccess-only
2026-08-11 01:40:33,092 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:40:33,092 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:40:33,401 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None
2026-08-11 01:40:33,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None
2026-08-11 01:40:34,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None
2026-08-11 01:40:34,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None
2026-08-11 01:40:34,993 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:35,732 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:36,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:36,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:37,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:37,362 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-08-11 01:40:37,881 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None
2026-08-11 01:40:38,380 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None
2026-08-11 01:40:38,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None
2026-08-11 01:40:38,899 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:39,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:40,138 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:40,650 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:41,131 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:41,131 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-08-11 01:40:41,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None
2026-08-11 01:40:41,656 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:42,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:43,097 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:43,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:44,069 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:44,069 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-08-11 01:40:44,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None
2026-08-11 01:40:44,586 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:45,223 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:45,696 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:46,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:46,658 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:46,658 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-08-11 01:40:47,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None
2026-08-11 01:40:47,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None
2026-08-11 01:40:47,669 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:48,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:48,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:49,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:49,877 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:49,877 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-08-11 01:40:50,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None
2026-08-11 01:40:50,382 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:51,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:51,621 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:52,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:52,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:52,603 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-08-11 01:40:53,091 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None
2026-08-11 01:40:53,092 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:40:53,699 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:54,170 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:40:54,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None
2026-08-11 01:40:55,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:40:55,143 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-08-11 01:40:55,143 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:40:55,143 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-11 01:40:55,144 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:55,144 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:55,173 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:40:55,198 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:40:55,198 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:40:55,223 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:40:55,289 [ scc.git] DEBUG Already up to date.
2026-08-11 01:40:55,289 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head'
2026-08-11 01:40:55,782 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:55,782 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD
2026-08-11 01:40:55,809 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head'
2026-08-11 01:40:56,250 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:56,250 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD
2026-08-11 01:40:56,275 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head'
2026-08-11 01:40:56,715 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:56,715 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD
2026-08-11 01:40:56,741 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head'
2026-08-11 01:40:57,173 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:57,173 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD
2026-08-11 01:40:57,195 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head'
2026-08-11 01:40:57,646 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:57,646 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD
2026-08-11 01:40:57,672 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head'
2026-08-11 01:40:58,122 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:58,122 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD
2026-08-11 01:40:58,148 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head'
2026-08-11 01:40:58,601 [ scc.git] DEBUG From https://github.com/ome/omero-gallery
2026-08-11 01:40:58,601 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD
2026-08-11 01:40:58,627 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:40:58,627 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:40:58,627 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:58,644 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-08-11 01:40:58,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:58,685 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e'
2026-08-11 01:40:58,907 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:58,998 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-08-11 01:40:58,999 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-08-11 01:40:59,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:59,183 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-08-11 01:40:59,214 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:59,229 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b'
2026-08-11 01:40:59,393 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:40:59,509 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:40:59,571 [ scc.git] DEBUG package-lock.json | 625 +++---------------------------------------------------
2026-08-11 01:40:59,571 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-)
2026-08-11 01:40:59,754 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:40:59,754 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-11 01:40:59,781 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:40:59,796 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-11 01:40:59,969 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:40:59,969 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-11 01:40:59,993 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:40:59,994 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:41:00,030 [ scc.git] DEBUG Calling 'git reset --hard 72b98da7efacf5a33e2739d65adfc0511395aac2'
2026-08-11 01:41:00,211 [ scc.git] DEBUG HEAD is now at 72b98da merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents)
2026-08-11 01:41:00,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:41:00,433 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5'
2026-08-11 01:41:00,459 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-11 01:41:00,476 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
--conflicts
2026-08-11 01:41:00,487 [ scc.config] DEBUG Found github.token
2026-08-11 01:41:00,487 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts.
2026-08-11 01:41:00,487 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-08-11 01:41:00,508 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:00,520 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d'
2026-08-11 01:41:00,675 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:41:00,743 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:41:00,811 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++-----
2026-08-11 01:41:00,811 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-)
2026-08-11 01:41:01,004 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:41:01,005 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-08-11 01:41:01,036 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:01,050 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c'
2026-08-11 01:41:01,214 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:41:01,294 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:41:01,361 [ scc.git] DEBUG package-lock.json | 6 +++---
2026-08-11 01:41:01,361 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-)
2026-08-11 01:41:01,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:41:01,584 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-11 01:41:01,617 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:01,631 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-11 01:41:01,838 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:41:01,838 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-11 01:41:01,868 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:41:01,869 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:41:01,909 [ scc.git] DEBUG Calling 'git reset --hard 049903113a1f59b940e61ab5afdef21130efeca2'
2026-08-11 01:41:02,093 [ scc.git] DEBUG HEAD is now at 0499031 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-08-11 01:41:02,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:41:02,268 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d'
2026-08-11 01:41:02,295 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-11 01:41:02,318 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
--conflicts
2026-08-11 01:41:02,332 [ scc.config] DEBUG Found github.token
2026-08-11 01:41:02,332 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts.
2026-08-11 01:41:02,332 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-11 01:41:02,361 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:02,375 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-11 01:41:02,558 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:41:02,558 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-11 01:41:02,583 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:41:02,585 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:41:02,619 [ scc.git] DEBUG Calling 'git reset --hard 049903113a1f59b940e61ab5afdef21130efeca2'
2026-08-11 01:41:02,763 [ scc.git] DEBUG HEAD is now at 0499031 merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6)
2026-08-11 01:41:02,981 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:41:02,982 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062'
2026-08-11 01:41:03,011 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd'
2026-08-11 01:41:03,032 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- package-lock.json
- PR #114 dependabot[bot] 'Bump tar and fsevents'
- package-lock.json
- PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- package-lock.json
- PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- package-lock.json
- PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
- package-lock.json
- PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- package-lock.json
--conflicts
2026-08-11 01:41:03,044 [ scc.config] DEBUG Found github.token
2026-08-11 01:41:03,044 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts.
2026-08-11 01:41:03,045 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:41:03,158 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:41:03,158 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:03,172 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:41:03,283 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:41:03,365 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1503b1a90> has no local changes
2026-08-11 01:41:03,365 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:41:03,553 [ scc.git] DEBUG [detached HEAD 80fe30f] merge master -Dorg -Ssuccess-only
2026-08-11 01:41:03,555 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:41:03,555 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:41:03,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None
2026-08-11 01:41:04,460 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/560 HTTP/1.1" 200 None
2026-08-11 01:41:04,461 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:41:05,244 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/0474a1599aa9b16f88b3631b4a768649f03490d2?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:05,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/0474a1599aa9b16f88b3631b4a768649f03490d2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:06,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/0474a1599aa9b16f88b3631b4a768649f03490d2/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:06,802 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/0474a1599aa9b16f88b3631b4a768649f03490d2?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:07,313 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/0474a1599aa9b16f88b3631b4a768649f03490d2?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:07,314 [ scc.repo] DEBUG - PR 560 dependabot[bot] 'Bump brace-expansion'
2026-08-11 01:41:07,815 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/559 HTTP/1.1" 200 None
2026-08-11 01:41:07,816 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:41:08,714 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/f2a06315eb748d52a82ab17ea2fa57280240d8c0?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:09,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/f2a06315eb748d52a82ab17ea2fa57280240d8c0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:09,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/f2a06315eb748d52a82ab17ea2fa57280240d8c0/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:10,311 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/f2a06315eb748d52a82ab17ea2fa57280240d8c0?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:10,783 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/f2a06315eb748d52a82ab17ea2fa57280240d8c0?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:10,784 [ scc.repo] DEBUG - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-08-11 01:41:11,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/558 HTTP/1.1" 200 None
2026-08-11 01:41:11,307 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:41:12,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/519392ce178b0ac5bd71964d515b6e9b15e13f28?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:12,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/519392ce178b0ac5bd71964d515b6e9b15e13f28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:13,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/519392ce178b0ac5bd71964d515b6e9b15e13f28/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:13,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/519392ce178b0ac5bd71964d515b6e9b15e13f28?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:14,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/519392ce178b0ac5bd71964d515b6e9b15e13f28?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:14,090 [ scc.repo] DEBUG - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-08-11 01:41:14,610 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/557 HTTP/1.1" 200 None
2026-08-11 01:41:14,611 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:41:15,306 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:15,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:16,351 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:16,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:17,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:17,328 [ scc.repo] DEBUG - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-08-11 01:41:17,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/546 HTTP/1.1" 200 None
2026-08-11 01:41:18,576 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/cf1523e8c6e3d91d8b862eb49a5b679caa796c78?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:19,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/cf1523e8c6e3d91d8b862eb49a5b679caa796c78/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:19,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/cf1523e8c6e3d91d8b862eb49a5b679caa796c78/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:20,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/cf1523e8c6e3d91d8b862eb49a5b679caa796c78?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:20,553 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/cf1523e8c6e3d91d8b862eb49a5b679caa796c78?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:20,554 [ scc.repo] DEBUG - PR 546 will-moore 'Use POST data for saveImgRdef params'
2026-08-11 01:41:21,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None
2026-08-11 01:41:21,565 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None
2026-08-11 01:41:22,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:22,640 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:23,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:41:23,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:24,084 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:24,084 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers'
2026-08-11 01:41:24,587 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None
2026-08-11 01:41:25,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None
2026-08-11 01:41:25,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:26,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:41:26,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None
2026-08-11 01:41:27,270 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:41:27,270 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip'
2026-08-11 01:41:27,271 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:41:27,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-11 01:41:27,272 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:41:27,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:41:27,296 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:41:27,326 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:41:27,326 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:41:27,502 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:41:28,283 [ scc.git] DEBUG Updating 7a798cee..177e4b5e
2026-08-11 01:41:28,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None
2026-08-11 01:41:29,684 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None
2026-08-11 01:41:30,408 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None
2026-08-11 01:41:31,193 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None
2026-08-11 01:41:32,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None
2026-08-11 01:41:33,040 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None
2026-08-11 01:41:33,826 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None
2026-08-11 01:41:34,642 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None
2026-08-11 01:41:35,490 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None
2026-08-11 01:41:36,299 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None
2026-08-11 01:41:37,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None
2026-08-11 01:41:37,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None
2026-08-11 01:41:38,644 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None
2026-08-11 01:41:39,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None
2026-08-11 01:41:40,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None
2026-08-11 01:41:41,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None
2026-08-11 01:41:41,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None
2026-08-11 01:41:42,769 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None
2026-08-11 01:41:43,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None
2026-08-11 01:41:44,600 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None
2026-08-11 01:41:45,487 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None
2026-08-11 01:41:46,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None
2026-08-11 01:41:46,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None
2026-08-11 01:41:47,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None
2026-08-11 01:41:48,570 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None
2026-08-11 01:41:49,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None
2026-08-11 01:41:50,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None
2026-08-11 01:41:51,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None
2026-08-11 01:41:52,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None
2026-08-11 01:41:52,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None
2026-08-11 01:41:55,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None
2026-08-11 01:41:55,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None
2026-08-11 01:41:56,788 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None
2026-08-11 01:41:57,566 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None
2026-08-11 01:41:58,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None
2026-08-11 01:41:59,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None
2026-08-11 01:41:59,954 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None
2026-08-11 01:42:00,030 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head'
2026-08-11 01:42:00,665 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:00,665 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD
2026-08-11 01:42:00,693 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head'
2026-08-11 01:42:01,232 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:01,232 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD
2026-08-11 01:42:01,262 [ scc.git] DEBUG Calling 'git fetch origin pull/546/head'
2026-08-11 01:42:01,843 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:01,844 [ scc.git] DEBUG * branch refs/pull/546/head -> FETCH_HEAD
2026-08-11 01:42:01,873 [ scc.git] DEBUG Calling 'git fetch origin pull/557/head'
2026-08-11 01:42:02,404 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:02,404 [ scc.git] DEBUG * branch refs/pull/557/head -> FETCH_HEAD
2026-08-11 01:42:02,430 [ scc.git] DEBUG Calling 'git fetch origin pull/558/head'
2026-08-11 01:42:02,945 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:02,946 [ scc.git] DEBUG * branch refs/pull/558/head -> FETCH_HEAD
2026-08-11 01:42:02,972 [ scc.git] DEBUG Calling 'git fetch origin pull/559/head'
2026-08-11 01:42:03,535 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:03,535 [ scc.git] DEBUG * branch refs/pull/559/head -> FETCH_HEAD
2026-08-11 01:42:03,564 [ scc.git] DEBUG Calling 'git fetch origin pull/560/head'
2026-08-11 01:42:04,091 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer
2026-08-11 01:42:04,091 [ scc.git] DEBUG * branch refs/pull/560/head -> FETCH_HEAD
2026-08-11 01:42:04,122 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:42:04,122 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:04,122 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:04,136 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9'
2026-08-11 01:42:04,192 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:04,206 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9'
2026-08-11 01:42:04,623 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js
2026-08-11 01:42:04,700 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:04,779 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +-
2026-08-11 01:42:04,779 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++
2026-08-11 01:42:04,779 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-)
2026-08-11 01:42:04,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:04,979 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-11 01:42:05,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:05,047 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-11 01:42:06,100 [ scc.git] DEBUG Auto-merging css/app.css
2026-08-11 01:42:06,100 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css
2026-08-11 01:42:06,100 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:42:06,100 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging package.json
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging src/app/context.js
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging src/model/image_config.js
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js
2026-08-11 01:42:06,101 [ scc.git] DEBUG Auto-merging webpack.dev.config.js
2026-08-11 01:42:06,135 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:42:06,139 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:42:06,241 [ scc.git] DEBUG Calling 'git reset --hard e36e3db57ab673c97e34a30d6d39b47681ebae9c'
2026-08-11 01:42:06,714 [ scc.git] DEBUG HEAD is now at e36e3db5 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip)
2026-08-11 01:42:06,934 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:06,935 [ scc.git] DEBUG Calling 'git merge-base 177e4b5ec04efe2a2d2e083159f678d8bd747db3 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a'
2026-08-11 01:42:06,979 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..177e4b5ec04efe2a2d2e083159f678d8bd747db3'
2026-08-11 01:42:07,018 [ scc.git] INFO - PR 532 will-moore 'Zarr layers'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- package-lock.json
- css/app.css
--conflicts
2026-08-11 01:42:07,031 [ scc.config] DEBUG Found github.token
2026-08-11 01:42:07,031 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts.
2026-08-11 01:42:07,031 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf1523e8c6e3d91d8b862eb49a5b679caa796c78'
2026-08-11 01:42:07,087 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:07,104 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 546 (Use POST data for saveImgRdef params) cf1523e8c6e3d91d8b862eb49a5b679caa796c78'
2026-08-11 01:42:07,489 [ scc.git] DEBUG Auto-merging src/model/image_config.js
2026-08-11 01:42:07,575 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:07,656 [ scc.git] DEBUG src/model/image_config.js | 7 ++++---
2026-08-11 01:42:07,656 [ scc.git] DEBUG 1 file changed, 4 insertions(+), 3 deletions(-)
2026-08-11 01:42:08,015 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:08,016 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b'
2026-08-11 01:42:08,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:08,109 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 557 (Bump socket.io-parser from 4.2.6 to 4.2.7) 91c3b503388ad8dd29beb05b0f7b1ef1e20ffd9b'
2026-08-11 01:42:08,415 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:08,499 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-08-11 01:42:08,499 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-08-11 01:42:08,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:08,706 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...519392ce178b0ac5bd71964d515b6e9b15e13f28'
2026-08-11 01:42:08,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:08,795 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 558 (Bump fast-uri from 3.1.4 to 3.1.5) 519392ce178b0ac5bd71964d515b6e9b15e13f28'
2026-08-11 01:42:09,048 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:42:09,171 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:09,253 [ scc.git] DEBUG package-lock.json | 12 ++++++------
2026-08-11 01:42:09,253 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-)
2026-08-11 01:42:09,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:09,466 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f2a06315eb748d52a82ab17ea2fa57280240d8c0'
2026-08-11 01:42:09,558 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:09,575 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 559 (Bump js-yaml and mocha) f2a06315eb748d52a82ab17ea2fa57280240d8c0'
2026-08-11 01:42:09,984 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:42:10,081 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:10,162 [ scc.git] DEBUG package-lock.json | 324 +++++++++++++++++++++++++++++-------------------------
2026-08-11 01:42:10,162 [ scc.git] DEBUG package.json | 2 +-
2026-08-11 01:42:10,162 [ scc.git] DEBUG 2 files changed, 173 insertions(+), 153 deletions(-)
2026-08-11 01:42:10,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:10,370 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...0474a1599aa9b16f88b3631b4a768649f03490d2'
2026-08-11 01:42:10,441 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:10,455 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 560 (Bump brace-expansion) 0474a1599aa9b16f88b3631b4a768649f03490d2'
2026-08-11 01:42:10,691 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:42:10,812 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:10,901 [ scc.git] DEBUG package-lock.json | 40 ++++++++++++++++++++--------------------
2026-08-11 01:42:10,901 [ scc.git] DEBUG 1 file changed, 20 insertions(+), 20 deletions(-)
2026-08-11 01:42:11,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:11,185 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:42:11,311 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:11,311 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:11,326 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:42:11,433 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:42:11,555 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1501cca10> has no local changes
2026-08-11 01:42:11,555 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..177e4b5e
Previously merged:
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 546 will-moore 'Use POST data for saveImgRdef params'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 560 dependabot[bot] 'Bump brace-expansion'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:42:11,723 [ scc.git] DEBUG [detached HEAD 31be36df] merge master -Dorg -Ssuccess-only
2026-08-11 01:42:11,726 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:42:11,726 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:42:12,102 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None
2026-08-11 01:42:12,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None
2026-08-11 01:42:13,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None
2026-08-11 01:42:13,219 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:42:13,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:14,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:14,936 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:42:15,422 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:15,892 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:15,892 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:42:16,382 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None
2026-08-11 01:42:16,990 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:17,471 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:17,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:18,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:18,425 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:42:18,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None
2026-08-11 01:42:19,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None
2026-08-11 01:42:20,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:20,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:21,045 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/45ee35acc44a7d119aa20b38b0427efbe5405322?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:21,522 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/45ee35acc44a7d119aa20b38b0427efbe5405322?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:21,522 [ scc.repo] DEBUG - PR 74 will-moore 'mapr extension of webclient'
2026-08-11 01:42:21,522 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:42:21,522 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-11 01:42:21,523 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:21,523 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:21,542 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:42:21,562 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:42:21,562 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:42:21,582 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:42:21,643 [ scc.git] DEBUG Already up to date.
2026-08-11 01:42:21,643 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-08-11 01:42:22,090 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-11 01:42:22,090 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-08-11 01:42:22,113 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head'
2026-08-11 01:42:22,620 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-11 01:42:22,620 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD
2026-08-11 01:42:22,648 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head'
2026-08-11 01:42:23,095 [ scc.git] DEBUG From https://github.com/ome/omero-mapr
2026-08-11 01:42:23,095 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD
2026-08-11 01:42:23,119 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:42:23,119 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:23,119 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:23,135 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-08-11 01:42:23,166 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:23,182 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (mapr extension of webclient) 45ee35acc44a7d119aa20b38b0427efbe5405322'
2026-08-11 01:42:23,452 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:23,533 [ scc.git] DEBUG .../templates/webclient/base/base_container.html | 182 +++++++++++++
2026-08-11 01:42:23,534 [ scc.git] DEBUG .../data/includes/right_plugin.general.js.html | 290 ---------------------
2026-08-11 01:42:23,534 [ scc.git] DEBUG requirements.txt | 2 +-
2026-08-11 01:42:23,534 [ scc.git] DEBUG 3 files changed, 183 insertions(+), 291 deletions(-)
2026-08-11 01:42:23,534 [ scc.git] DEBUG create mode 100644 omero_mapr/templates/webclient/base/base_container.html
2026-08-11 01:42:23,534 [ scc.git] DEBUG delete mode 100644 omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html
2026-08-11 01:42:23,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:23,714 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-08-11 01:42:23,747 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:23,759 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d'
2026-08-11 01:42:23,957 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:24,022 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:42:24,022 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:42:24,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:24,238 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-11 01:42:24,275 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:24,295 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-11 01:42:24,500 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml
2026-08-11 01:42:24,500 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml
2026-08-11 01:42:24,528 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:42:24,529 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:42:24,556 [ scc.git] DEBUG Calling 'git reset --hard 1176908539f8154219ca3d660c89622c59775181'
2026-08-11 01:42:24,705 [ scc.git] DEBUG HEAD is now at 1176908 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI)
2026-08-11 01:42:24,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:24,896 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99'
2026-08-11 01:42:24,921 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a'
2026-08-11 01:42:24,942 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
- .github/workflows/publish_pypi.yml
--conflicts
2026-08-11 01:42:24,953 [ scc.config] DEBUG Found github.token
2026-08-11 01:42:24,953 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts.
2026-08-11 01:42:24,953 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:42:25,068 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:25,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:25,084 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:42:25,200 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:42:25,283 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15051d850> has no local changes
2026-08-11 01:42:25,283 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:42:25,417 [ scc.git] DEBUG [detached HEAD 2c68c29] merge master -Dorg -Ssuccess-only
2026-08-11 01:42:25,419 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:42:25,419 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:42:25,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None
2026-08-11 01:42:26,373 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None
2026-08-11 01:42:26,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None
2026-08-11 01:42:27,465 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:27,932 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:28,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:28,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:28,963 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-08-11 01:42:29,458 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None
2026-08-11 01:42:30,052 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None
2026-08-11 01:42:30,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:31,111 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:31,619 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:32,100 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:32,100 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-08-11 01:42:32,620 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None
2026-08-11 01:42:33,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None
2026-08-11 01:42:33,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:34,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:34,963 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:35,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:35,478 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-08-11 01:42:35,478 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:42:35,478 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-11 01:42:35,479 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:35,479 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:35,507 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:42:35,531 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:42:35,531 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:42:35,614 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:42:35,894 [ scc.git] DEBUG Updating 3cd120c..6a653e4
2026-08-11 01:42:36,559 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None
2026-08-11 01:42:37,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None
2026-08-11 01:42:38,383 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None
2026-08-11 01:42:38,384 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head'
2026-08-11 01:42:39,030 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-11 01:42:39,031 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD
2026-08-11 01:42:39,058 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head'
2026-08-11 01:42:39,766 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-11 01:42:39,766 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD
2026-08-11 01:42:39,795 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head'
2026-08-11 01:42:40,280 [ scc.git] DEBUG From https://github.com/ome/omero-metadata
2026-08-11 01:42:40,281 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD
2026-08-11 01:42:40,309 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:42:40,309 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:40,309 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:40,327 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-11 01:42:40,392 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:40,408 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-11 01:42:40,677 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py
2026-08-11 01:42:40,677 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py
2026-08-11 01:42:40,677 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-08-11 01:42:40,677 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-08-11 01:42:40,707 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:42:40,708 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:42:40,734 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-11 01:42:40,899 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-08-11 01:42:41,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:41,094 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102'
2026-08-11 01:42:41,155 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-11 01:42:41,188 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- src/omero_metadata/cli.py
- src/omero_metadata/populate.py
--conflicts
2026-08-11 01:42:41,202 [ scc.config] DEBUG Found github.token
2026-08-11 01:42:41,202 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts.
2026-08-11 01:42:41,202 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-11 01:42:41,272 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:41,289 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-11 01:42:41,589 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py
2026-08-11 01:42:41,590 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py
2026-08-11 01:42:41,590 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py
2026-08-11 01:42:41,613 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:42:41,615 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:42:41,651 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-11 01:42:41,804 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation
2026-08-11 01:42:42,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:42,013 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7'
2026-08-11 01:42:42,075 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b'
2026-08-11 01:42:42,108 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- PR #55 kkoz 'Prevent users from creating columns with python keyword names'
- src/omero_metadata/populate.py
- Upstream changes
- src/omero_metadata/populate.py
--conflicts
2026-08-11 01:42:42,122 [ scc.config] DEBUG Found github.token
2026-08-11 01:42:42,122 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts.
2026-08-11 01:42:42,122 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-08-11 01:42:42,175 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:42,193 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f'
2026-08-11 01:42:42,450 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:42,523 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++-
2026-08-11 01:42:42,523 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-)
2026-08-11 01:42:42,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:42,708 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:42:42,826 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:42,826 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:42,840 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:42:42,972 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:42:43,034 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15016ebd0> has no local changes
2026-08-11 01:42:43,035 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:42:43,177 [ scc.git] DEBUG [detached HEAD ce54363] merge master -Dorg -Ssuccess-only
2026-08-11 01:42:43,178 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:42:43,178 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:42:43,604 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None
2026-08-11 01:42:44,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None
2026-08-11 01:42:44,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:45,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:45,898 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:46,359 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:46,360 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:42:46,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None
2026-08-11 01:42:46,860 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:42:47,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:48,057 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:48,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:49,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:49,073 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-08-11 01:42:49,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None
2026-08-11 01:42:49,598 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:42:50,322 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:50,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:42:51,364 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None
2026-08-11 01:42:51,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:42:51,835 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-08-11 01:42:52,366 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None
2026-08-11 01:42:52,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None
2026-08-11 01:42:53,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None
2026-08-11 01:42:53,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None
2026-08-11 01:42:54,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None
2026-08-11 01:42:54,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None
2026-08-11 01:42:55,452 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None
2026-08-11 01:42:55,454 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:42:55,454 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-11 01:42:55,455 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:55,456 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:55,479 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:42:55,500 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:42:55,500 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:42:55,527 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:42:55,583 [ scc.git] DEBUG Already up to date.
2026-08-11 01:42:55,583 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head'
2026-08-11 01:42:56,041 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-11 01:42:56,041 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD
2026-08-11 01:42:56,067 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head'
2026-08-11 01:42:56,512 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-11 01:42:56,512 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD
2026-08-11 01:42:56,538 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head'
2026-08-11 01:42:57,041 [ scc.git] DEBUG From https://github.com/ome/omero-parade
2026-08-11 01:42:57,041 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD
2026-08-11 01:42:57,063 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:42:57,063 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:57,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:57,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0'
2026-08-11 01:42:57,095 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:57,108 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0'
2026-08-11 01:42:57,318 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:57,399 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++----------------------------
2026-08-11 01:42:57,399 [ scc.git] DEBUG package.json | 2 +-
2026-08-11 01:42:57,399 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-)
2026-08-11 01:42:57,636 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:57,637 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80'
2026-08-11 01:42:57,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:57,679 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80'
2026-08-11 01:42:57,846 [ scc.git] DEBUG Auto-merging package-lock.json
2026-08-11 01:42:57,846 [ scc.git] DEBUG Auto-merging package.json
2026-08-11 01:42:57,922 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:57,990 [ scc.git] DEBUG package-lock.json | 18 ++++++++++--------
2026-08-11 01:42:57,990 [ scc.git] DEBUG package.json | 2 +-
2026-08-11 01:42:57,990 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-)
2026-08-11 01:42:58,191 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:58,192 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-08-11 01:42:58,230 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:58,245 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0'
2026-08-11 01:42:58,457 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:42:58,524 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:42:58,524 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:42:58,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:42:58,863 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:42:58,982 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:42:58,982 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:42:58,997 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:42:59,101 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:42:59,170 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1501f65d0> has no local changes
2026-08-11 01:42:59,170 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:42:59,308 [ scc.git] DEBUG [detached HEAD 9c86e10] merge master -Dorg -Ssuccess-only
2026-08-11 01:42:59,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:42:59,310 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:42:59,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None
2026-08-11 01:43:00,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None
2026-08-11 01:43:00,175 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:00,926 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:01,525 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:02,010 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:02,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:02,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:02,974 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:02,974 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:02,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-11 01:43:02,976 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:02,976 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:03,001 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:03,029 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:03,029 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:03,052 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:03,148 [ scc.git] DEBUG Already up to date.
2026-08-11 01:43:03,148 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head'
2026-08-11 01:43:03,641 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools
2026-08-11 01:43:03,641 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD
2026-08-11 01:43:03,664 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:03,664 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:03,665 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:03,677 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e'
2026-08-11 01:43:03,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:03,724 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e'
2026-08-11 01:43:03,958 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:04,036 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:43:04,036 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:43:04,227 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:04,227 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:04,336 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:04,336 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:04,349 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:04,453 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:04,502 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15022cb10> has no local changes
2026-08-11 01:43:04,502 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:04,641 [ scc.git] DEBUG [detached HEAD f75a071] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:04,643 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:04,644 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:05,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None
2026-08-11 01:43:05,520 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None
2026-08-11 01:43:05,521 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:05,521 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-11 01:43:05,522 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:05,522 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:05,553 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:05,577 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:05,577 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:05,622 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:05,860 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96
2026-08-11 01:43:06,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None
2026-08-11 01:43:07,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None
2026-08-11 01:43:07,468 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:07,468 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:07,468 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:07,486 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:07,595 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:07,595 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:07,609 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:07,719 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:07,788 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15022ed10> has no local changes
2026-08-11 01:43:07,788 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:07,978 [ scc.git] DEBUG [detached HEAD a7e677e] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:07,980 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:07,982 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:08,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None
2026-08-11 01:43:08,857 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None
2026-08-11 01:43:08,859 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:09,557 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:10,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:10,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:11,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:11,665 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:11,665 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:12,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None
2026-08-11 01:43:12,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None
2026-08-11 01:43:13,584 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:14,079 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:14,567 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:15,030 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:15,031 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)'
2026-08-11 01:43:15,031 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:15,031 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-11 01:43:15,033 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:15,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:15,057 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:15,080 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:15,080 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:15,104 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:15,170 [ scc.git] DEBUG Already up to date.
2026-08-11 01:43:15,170 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-08-11 01:43:15,818 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-08-11 01:43:15,818 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-08-11 01:43:15,849 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-08-11 01:43:16,284 [ scc.git] DEBUG From https://github.com/ome/omero-signup
2026-08-11 01:43:16,284 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-08-11 01:43:16,308 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:16,308 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:16,308 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:16,323 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-11 01:43:16,355 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:16,370 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-11 01:43:16,642 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG Auto-merging omero_signup/urls.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG Auto-merging omero_signup/views.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG Auto-merging setup.py
2026-08-11 01:43:16,642 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py
2026-08-11 01:43:16,661 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:43:16,662 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:43:16,701 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e'
2026-08-11 01:43:16,888 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build
2026-08-11 01:43:17,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:17,117 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d'
2026-08-11 01:43:17,150 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e'
2026-08-11 01:43:17,174 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- setup.py
- omero_signup/urls.py
- omero_signup/signup_settings.py
- omero_signup/views.py
--conflicts
2026-08-11 01:43:17,187 [ scc.config] DEBUG Found github.token
2026-08-11 01:43:17,187 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts.
2026-08-11 01:43:17,187 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-08-11 01:43:17,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:17,225 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa'
2026-08-11 01:43:17,424 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:17,498 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:43:17,498 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:43:17,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:17,690 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:17,806 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:17,806 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:17,820 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:17,925 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:17,982 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1503f3990> has no local changes
2026-08-11 01:43:17,982 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:18,117 [ scc.git] DEBUG [detached HEAD 28fcdc4] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:18,119 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:18,121 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:18,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None
2026-08-11 01:43:19,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None
2026-08-11 01:43:19,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None
2026-08-11 01:43:20,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None
2026-08-11 01:43:20,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:21,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:21,678 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:22,137 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:22,137 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-08-11 01:43:22,137 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:22,137 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-11 01:43:22,139 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:22,139 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:22,165 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:22,190 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:22,191 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:22,220 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:22,393 [ scc.git] DEBUG Updating cda3ec6..c8a0015
2026-08-11 01:43:22,948 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None
2026-08-11 01:43:23,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None
2026-08-11 01:43:24,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None
2026-08-11 01:43:24,726 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head'
2026-08-11 01:43:25,262 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra
2026-08-11 01:43:25,262 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD
2026-08-11 01:43:25,286 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:25,286 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:25,286 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:25,300 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623'
2026-08-11 01:43:25,334 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:25,349 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623'
2026-08-11 01:43:25,565 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml
2026-08-11 01:43:25,653 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:25,728 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++
2026-08-11 01:43:25,728 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++
2026-08-11 01:43:25,728 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++
2026-08-11 01:43:25,728 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++
2026-08-11 01:43:25,728 [ scc.git] DEBUG ms/test | 2 ++
2026-08-11 01:43:25,728 [ scc.git] DEBUG 5 files changed, 56 insertions(+)
2026-08-11 01:43:25,728 [ scc.git] DEBUG create mode 100644 ms/compose.yml
2026-08-11 01:43:25,728 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile
2026-08-11 01:43:25,728 [ scc.git] DEBUG create mode 100755 ms/test
2026-08-11 01:43:25,947 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:25,948 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:26,063 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:26,063 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:26,076 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:26,185 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:26,267 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff15023ef50> has no local changes
2026-08-11 01:43:26,267 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:26,425 [ scc.git] DEBUG [detached HEAD a277774] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:26,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:26,426 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:26,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None
2026-08-11 01:43:27,468 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None
2026-08-11 01:43:27,468 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:28,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:28,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:29,263 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:29,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:30,225 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:30,225 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:30,225 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:30,225 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-11 01:43:30,226 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:30,226 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:30,250 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:30,274 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:30,274 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:30,299 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:30,363 [ scc.git] DEBUG Already up to date.
2026-08-11 01:43:30,363 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head'
2026-08-11 01:43:30,826 [ scc.git] DEBUG From https://github.com/ome/omero-upload
2026-08-11 01:43:30,826 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD
2026-08-11 01:43:30,850 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:30,850 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:30,850 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:30,867 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-08-11 01:43:30,890 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:30,905 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea'
2026-08-11 01:43:31,111 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:31,191 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:43:31,191 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:43:31,432 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:31,433 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:31,562 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:31,562 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:31,578 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:31,686 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:31,746 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1501ae810> has no local changes
2026-08-11 01:43:31,746 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:31,925 [ scc.git] DEBUG [detached HEAD 80f4579] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:31,927 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:31,927 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:32,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None
2026-08-11 01:43:32,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None
2026-08-11 01:43:32,744 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:33,478 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:34,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:34,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:35,128 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:35,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:35,604 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:35,604 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:35,604 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-11 01:43:35,605 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:35,605 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:35,629 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:35,648 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:35,648 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:35,668 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:35,834 [ scc.git] DEBUG Updating deab817..160d894
2026-08-11 01:43:36,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None
2026-08-11 01:43:36,484 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head'
2026-08-11 01:43:36,942 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope
2026-08-11 01:43:36,942 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD
2026-08-11 01:43:36,966 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:36,966 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:36,966 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:36,981 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-08-11 01:43:37,000 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:37,011 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902'
2026-08-11 01:43:37,190 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:37,288 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:43:37,289 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:43:37,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:37,486 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:37,601 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:37,601 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:37,615 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:37,713 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:37,775 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff14c0166d0> has no local changes
2026-08-11 01:43:37,776 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:37,905 [ scc.git] DEBUG [detached HEAD a81be58] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:37,906 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:37,907 [ scc.git] INFO Overriding base-branch from master to main
2026-08-11 01:43:37,907 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:38,261 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None
2026-08-11 01:43:38,768 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None
2026-08-11 01:43:39,278 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None
2026-08-11 01:43:39,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:40,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:40,905 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:41,378 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:41,864 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:41,864 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import'
2026-08-11 01:43:42,369 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None
2026-08-11 01:43:42,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None
2026-08-11 01:43:43,514 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None
2026-08-11 01:43:44,105 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:44,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:45,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:45,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:45,791 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-08-11 01:43:45,791 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:45,791 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-11 01:43:45,792 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:45,792 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:45,815 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main'
2026-08-11 01:43:45,838 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:45,838 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main'
2026-08-11 01:43:45,866 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main'
2026-08-11 01:43:46,041 [ scc.git] DEBUG Updating 8f3c313..4e1e685
2026-08-11 01:43:46,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None
2026-08-11 01:43:47,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None
2026-08-11 01:43:47,560 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head'
2026-08-11 01:43:48,138 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-08-11 01:43:48,138 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD
2026-08-11 01:43:48,162 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head'
2026-08-11 01:43:48,856 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr
2026-08-11 01:43:48,856 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD
2026-08-11 01:43:48,881 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:48,881 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:48,881 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:48,897 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-11 01:43:48,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:48,945 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-11 01:43:49,158 [ scc.git] DEBUG Auto-merging README.rst
2026-08-11 01:43:49,158 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py
2026-08-11 01:43:49,158 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py
2026-08-11 01:43:49,158 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-08-11 01:43:49,185 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result.
2026-08-11 01:43:49,186 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U'
2026-08-11 01:43:49,226 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-08-11 01:43:49,387 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1
2026-08-11 01:43:49,592 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:49,593 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8'
2026-08-11 01:43:49,617 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368'
2026-08-11 01:43:49,635 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Conflicting PR. Removed from build [OMERO-plugins-push#38](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/consoleText) for more details.
Possible conflicts:
- Upstream changes
- omero_web_zarr/urls.py
--conflicts
2026-08-11 01:43:49,645 [ scc.config] DEBUG Found github.token
2026-08-11 01:43:49,645 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts.
2026-08-11 01:43:49,645 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-08-11 01:43:49,688 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:49,700 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc'
2026-08-11 01:43:49,911 [ scc.git] DEBUG Auto-merging README.rst
2026-08-11 01:43:49,911 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py
2026-08-11 01:43:49,979 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:50,055 [ scc.git] DEBUG README.rst | 3 +
2026-08-11 01:43:50,055 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++
2026-08-11 01:43:50,055 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 +
2026-08-11 01:43:50,055 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++-
2026-08-11 01:43:50,055 [ scc.git] DEBUG setup.py | 5 +-
2026-08-11 01:43:50,055 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-)
2026-08-11 01:43:50,055 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html
2026-08-11 01:43:50,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:50,254 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:50,378 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:50,378 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:50,393 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:50,508 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:50,576 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff150406550> has no local changes
2026-08-11 01:43:50,576 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:50,715 [ scc.git] DEBUG [detached HEAD b837bbb] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:50,716 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:50,716 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:51,047 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None
2026-08-11 01:43:51,657 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None
2026-08-11 01:43:51,658 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:52,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:52,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:53,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:53,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:54,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:54,375 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:54,375 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:54,375 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-11 01:43:54,376 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:54,376 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:54,401 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:54,426 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:54,426 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:54,454 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:54,521 [ scc.git] DEBUG Already up to date.
2026-08-11 01:43:54,521 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head'
2026-08-11 01:43:55,022 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror
2026-08-11 01:43:55,022 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD
2026-08-11 01:43:55,044 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:43:55,044 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:55,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:55,059 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-08-11 01:43:55,079 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:55,093 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9'
2026-08-11 01:43:55,345 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:43:55,447 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:43:55,447 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:43:55,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:43:55,630 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:43:55,771 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:55,771 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:55,787 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:43:55,909 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:43:55,969 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1504058d0> has no local changes
2026-08-11 01:43:55,970 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:43:56,115 [ scc.git] DEBUG [detached HEAD 9b6a4a2] merge master -Dorg -Ssuccess-only
2026-08-11 01:43:56,117 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:43:56,117 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:43:56,550 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None
2026-08-11 01:43:57,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None
2026-08-11 01:43:57,067 [ scc.repo] DEBUG # ... Include label: dependencies
2026-08-11 01:43:57,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:58,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:43:58,764 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:43:59,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None
2026-08-11 01:43:59,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:43:59,762 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:43:59,763 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:43:59,763 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-11 01:43:59,764 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:43:59,764 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:43:59,791 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:43:59,814 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:43:59,814 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:43:59,839 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:43:59,898 [ scc.git] DEBUG Already up to date.
2026-08-11 01:43:59,899 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head'
2026-08-11 01:44:00,373 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest
2026-08-11 01:44:00,374 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD
2026-08-11 01:44:00,400 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:44:00,400 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:00,400 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:00,418 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-08-11 01:44:00,444 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:00,463 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478'
2026-08-11 01:44:00,663 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:44:00,745 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +-
2026-08-11 01:44:00,745 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-)
2026-08-11 01:44:00,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:00,954 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:44:01,078 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:01,078 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:01,091 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:44:01,204 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:44:01,266 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff152b3b210> has no local changes
2026-08-11 01:44:01,267 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:44:01,425 [ scc.git] DEBUG [detached HEAD b37eef0] merge master -Dorg -Ssuccess-only
2026-08-11 01:44:01,427 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:01,427 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:44:01,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2
2026-08-11 01:44:01,660 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:44:01,660 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-11 01:44:01,660 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:01,661 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:01,682 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master'
2026-08-11 01:44:01,708 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:44:01,708 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master'
2026-08-11 01:44:01,732 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master'
2026-08-11 01:44:01,798 [ scc.git] DEBUG Already up to date.
2026-08-11 01:44:01,798 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:44:01,798 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:01,798 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:01,817 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:44:01,932 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:01,932 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:01,948 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:44:02,055 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:44:02,167 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff14c068e90> has no local changes
2026-08-11 01:44:02,167 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/rOMERO-gateway
Already up to date.
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:44:02,303 [ scc.git] DEBUG [detached HEAD dcb1bee] merge master -Dorg -Ssuccess-only
2026-08-11 01:44:02,305 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:02,305 [ scc.git] INFO Overriding base-branch from master to develop
2026-08-11 01:44:02,305 [ scc.repo] DEBUG ## PRs found:
2026-08-11 01:44:02,760 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None
2026-08-11 01:44:03,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None
2026-08-11 01:44:03,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-08-11 01:44:04,348 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None
2026-08-11 01:44:04,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None
2026-08-11 01:44:05,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None
2026-08-11 01:44:05,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2
2026-08-11 01:44:05,931 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-08-11 01:44:05,932 [ scc.repo] DEBUG ## Branches found:
2026-08-11 01:44:05,932 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-11 01:44:05,933 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:05,933 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:05,953 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop'
2026-08-11 01:44:05,972 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included.
2026-08-11 01:44:05,972 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop'
2026-08-11 01:44:06,019 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop'
2026-08-11 01:44:06,326 [ scc.git] DEBUG Updating 4b4c755..5b4d768
2026-08-11 01:44:06,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None
2026-08-11 01:44:07,632 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None
2026-08-11 01:44:08,427 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None
2026-08-11 01:44:09,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None
2026-08-11 01:44:10,203 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None
2026-08-11 01:44:11,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None
2026-08-11 01:44:11,896 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None
2026-08-11 01:44:11,897 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head'
2026-08-11 01:44:12,585 [ scc.git] DEBUG From https://github.com/ome/scripts
2026-08-11 01:44:12,586 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD
2026-08-11 01:44:12,611 [ scc.git] DEBUG ## Unique users: []
2026-08-11 01:44:12,611 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:12,611 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:12,626 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f'
2026-08-11 01:44:12,657 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:12,671 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f'
2026-08-11 01:44:12,947 [ scc.git] DEBUG Merge made by the 'ort' strategy.
2026-08-11 01:44:13,020 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++--
2026-08-11 01:44:13,020 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-)
2026-08-11 01:44:13,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:13,222 [ scc.git] DEBUG Calling 'git submodule update'
2026-08-11 01:44:13,355 [ scc.git] DEBUG Get sha1 of %s
2026-08-11 01:44:13,355 [ scc.git] DEBUG Calling 'git rev-parse HEAD'
2026-08-11 01:44:13,371 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:44:13,490 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:44:13,563 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff14c088690> has no local changes
2026-08-11 01:44:13,563 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:44:13,833 [ scc.git] DEBUG [detached HEAD 6a32aca] merge master -Dorg -Ssuccess-only
2026-08-11 01:44:13,835 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:13,835 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path'
2026-08-11 01:44:14,082 [ scc.config] DEBUG Found submodule.minimal-omero-client.url
2026-08-11 01:44:14,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:14,348 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch
2026-08-11 01:44:14,357 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url
2026-08-11 01:44:14,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:14,803 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch
2026-08-11 01:44:14,811 [ scc.config] DEBUG Found submodule.omero-cli-render.url
2026-08-11 01:44:15,241 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:15,269 [ scc.config] DEBUG Found submodule.omero-cli-render.branch
2026-08-11 01:44:15,276 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url
2026-08-11 01:44:15,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:15,927 [ scc.config] DEBUG Found submodule.omero-figure.url
2026-08-11 01:44:16,495 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:16,524 [ scc.config] DEBUG Found submodule.omero-figure.branch
2026-08-11 01:44:16,532 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url
2026-08-11 01:44:17,011 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:17,043 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch
2026-08-11 01:44:17,052 [ scc.config] DEBUG Found submodule.omero-gallery.url
2026-08-11 01:44:17,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:17,516 [ scc.config] DEBUG Found submodule.omero-gallery.branch
2026-08-11 01:44:17,526 [ scc.config] DEBUG Found submodule.omero-iviewer.url
2026-08-11 01:44:17,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:18,006 [ scc.config] DEBUG Found submodule.omero-iviewer.branch
2026-08-11 01:44:18,015 [ scc.config] DEBUG Found submodule.omero-mapr.url
2026-08-11 01:44:18,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:18,438 [ scc.config] DEBUG Found submodule.omero-mapr.branch
2026-08-11 01:44:18,446 [ scc.config] DEBUG Found submodule.omero-metadata.url
2026-08-11 01:44:18,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:18,893 [ scc.config] DEBUG Found submodule.omero-metadata.branch
2026-08-11 01:44:18,902 [ scc.config] DEBUG Found submodule.omero-parade.url
2026-08-11 01:44:19,308 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:19,336 [ scc.config] DEBUG Found submodule.omero-parade.branch
2026-08-11 01:44:19,345 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url
2026-08-11 01:44:19,809 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:19,839 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch
2026-08-11 01:44:19,848 [ scc.config] DEBUG Found submodule.omero-rois.url
2026-08-11 01:44:20,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:20,294 [ scc.config] DEBUG Found submodule.omero-signup.url
2026-08-11 01:44:20,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:20,754 [ scc.config] DEBUG Found submodule.omero-test-infra.url
2026-08-11 01:44:21,345 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:21,376 [ scc.config] DEBUG Found submodule.omero-test-infra.branch
2026-08-11 01:44:21,385 [ scc.config] DEBUG Found submodule.omero-upload.url
2026-08-11 01:44:21,810 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:21,841 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url
2026-08-11 01:44:22,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:22,292 [ scc.config] DEBUG Found submodule.omero-web-zarr.url
2026-08-11 01:44:22,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:22,713 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch
2026-08-11 01:44:22,721 [ scc.config] DEBUG Found submodule.omero-weberror.url
2026-08-11 01:44:23,158 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:27,514 [ scc.config] DEBUG Found submodule.omero-weberror.branch
2026-08-11 01:44:27,521 [ scc.config] DEBUG Found submodule.omero-webtest.url
2026-08-11 01:44:27,916 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:27,947 [ scc.config] DEBUG Found submodule.omero-webtest.branch
2026-08-11 01:44:27,957 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url
2026-08-11 01:44:28,360 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:28,392 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch
2026-08-11 01:44:28,401 [ scc.config] DEBUG Found submodule.scripts.url
2026-08-11 01:44:28,831 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None
2026-08-11 01:44:28,863 [ scc.config] DEBUG Found submodule.scripts.branch
2026-08-11 01:44:28,863 [ scc.git] DEBUG Calling 'git status --porcelain'
2026-08-11 01:44:30,874 [ scc.git] DEBUG <scc.git.GitRepository object at 0x7ff1503d1d50> has local changes
2026-08-11 01:44:30,874 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only
Repository: ome/omero-plugins
Already up to date.
Merged PRs:
- PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
- PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
- PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
Repository: ome/minimal-omero-client
Already up to date.
Repository: ome/omero-cli-duplicate
Excluded PRs:
- PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
Already up to date.
Merged PRs:
- PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-cli-render
Excluded PRs:
- PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
Updating ce6e13c..68b7303
Previously merged:
- PR 74 jburel 'Replace manual changelog by automated GH release step'
- PR 75 jburel 'Sort the new channels to ensure settings are set'
- PR 71 dominikl 'Escape slash character in image names'
- PR 69 dominikl 'Fix help text for impo/export commands'
Merged PRs:
- PR 59 will-moore 'Apply settings to Plate'
Repository: ome/omero-cli-zarr
Excluded PRs:
- PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
- PR 181 will-moore 'Add labels support for import' (exclude comment)
- PR 170 will-moore 'Use ome zarr models py' (stage: draft)
- PR 166 will-moore 'Downsample scale option' (stage: draft)
- PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
- PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
Updating 11d3587..9f844b8
Previously merged:
- PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
- PR 192 jburel 'Set Omero pixel size'
- PR 186 jburel 'Create release from tag'
- PR 187 dominikl 'Fix target-by-name option'
- PR 180 will-moore 'Import command'
- PR 179 will-moore 'Changelog 0.6.0'
- PR 177 jburel 'Replace fromstring by frombuffer'
- PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
- PR 147 will-moore 'Name option'
- PR 173 will-moore 'Add test_export_plate_polygons()'
- PR 171 will-moore 'Initial addition of integration tests'
- PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 193 dominikl 'Only parse import uris if stated'
- PR 196 will-moore 'Storage options only if needed'
Conflicting PRs (not included):
- PR 174 will-moore 'Skip wells'
- PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
- PR 182 will-moore 'Revert "Remove support for Plate import"'
Repository: ome/omero-figure
Updating 9cc36cde..18887279
Previously merged:
- PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
- PR 691 dependabot[bot] 'Bump esbuild and vite'
- PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
- PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
- PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
- PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
- PR 685 will-moore 'Fix static files links for release build'
- PR 683 will-moore 'Add touch support for clicking on single panel'
- PR 680 will-moore 'Use --pre install for export script in README'
- PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
- PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
- PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
- PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
- PR 666 will-moore 'Standalone app'
- PR 676 dependabot[bot] 'Bump picomatch'
- PR 669 will-moore 'Standalone python script'
- PR 662 will-moore 'Export script handles OME-zarr images'
- PR 663 will-moore 'Zarr'
- PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
- PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
- PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
- PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
- PR 667 Tom-TBT 'Label suggestion interface'
- PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
- PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
- PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
- PR 664 Nirkan 'Handle many channels '
- PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
- PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
- PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
- PR 649 jburel 'Replace manual changelog by automated GH release step'
- PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
- PR 637 Rdornier 'Fix scalebar position'
- PR 600 Rdornier 'Label on rois'
- PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
- PR 651 Rdornier 'More compliant align to grid'
- PR 650 jburel 'Bump Python version'
- PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
- PR 610 will-moore 'Add docs/contributing.rst'
- PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
- PR 646 JensWendt 'fix word wrap of image names'
- PR 612 will-moore 'Script version'
- PR 630 will-moore 'Fix color and position for ALL new panel insets'
- PR 616 Rdornier 'Fix labels around border'
- PR 605 Tom-TBT 'Colorbar feature'
- PR 638 Rdornier 'Fix arrow opacity'
- PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
- PR 635 dependabot[bot] 'Bump esbuild and vite'
- PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
- PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
- PR 692 will-moore 'colorbar lut background fix'
- PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
- PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
- PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
Repository: ome/omero-fpbioimage
Already up to date.
Merged PRs:
- PR 18 jburel 'default size z value'
- PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-gallery
Already up to date.
Merged PRs:
- PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
- PR 114 dependabot[bot] 'Bump tar and fsevents'
- PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
- PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
Conflicting PRs (not included):
- PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
- PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
- PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
Repository: ome/omero-iviewer
Excluded PRs:
- PR 420 will-moore 'Add release process to README' (exclude comment)
- PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
Updating 7a798cee..177e4b5e
Previously merged:
- PR 541 will-moore 'Only add channel to tile request string if active'
- PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
- PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
- PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
- PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
- PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
- PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
- PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
- PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
- PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
- PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
- PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
- PR 535 dependabot[bot] 'Bump tmp and eslint'
- PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
- PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
- PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
- PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
- PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
- PR 529 will-moore 'Image id and roi id initial params'
- PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
- PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
- PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
- PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
- PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
- PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
- PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
- PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
- PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
- PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
- PR 513 jburel 'Bump Python version'
- PR 512 jburel 'Replace manual changelog by automated GH release step'
- PR 465 will-moore 'Save as Figure'
- PR 517 will-moore 'Fix roi link permissions'
- PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
- PR 510 joshmoore 'Re-enable omero-test-infra'
- PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 471 will-moore 'Z projection disabled tooltip'
- PR 546 will-moore 'Use POST data for saveImgRdef params'
- PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
- PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
- PR 559 dependabot[bot] 'Bump js-yaml and mocha'
- PR 560 dependabot[bot] 'Bump brace-expansion'
Conflicting PRs (not included):
- PR 532 will-moore 'Zarr layers'
Repository: ome/omero-mapr
Excluded PRs:
- PR 79 will-moore 'Right panel title' (exclude comment)
Already up to date.
Merged PRs:
- PR 74 will-moore 'mapr extension of webclient'
- PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Conflicting PRs (not included):
- PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-metadata
Updating 3cd120c..6a653e4
Previously merged:
- PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
- PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
- PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Merged PRs:
- PR 92 dominikl 'add resolve_rois to projectwrapper'
Conflicting PRs (not included):
- PR 55 kkoz 'Prevent users from creating columns with python keyword names'
- PR 64 will-moore 'Support images_by_name for Screen and Plate'
Repository: ome/omero-parade
Excluded PRs:
- PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
- PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
- PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
- PR 39 chris-allan 'Expand all for Screens' (exclude comment)
Already up to date.
Merged PRs:
- PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
- PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
- PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
Repository: ome/omero-prometheus-tools
Already up to date.
Merged PRs:
- PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-rois
Excluded PRs:
- PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
Updating bdfeb5e..fc9ff96
Previously merged:
- PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
- PR 35 will-moore 'Add roi to array functions'
Repository: ome/omero-signup
Already up to date.
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Conflicting PRs (not included):
- PR 14 manics 'Add pre-commit (black, flake8)'
Repository: openmicroscopy/omero-test-infra
Excluded PRs:
- PR 75 marimeireles 'Microservices' (user: marimeireles)
Updating cda3ec6..c8a0015
Previously merged:
- PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
- PR 82 jburel 'Upgrade python'
- PR 81 erickmartins 'add ulimits to omero-server container'
Merged PRs:
- PR 74 joshmoore 'Add 'ms' target for ./docker'
Repository: ome/omero-upload
Already up to date.
Merged PRs:
- PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-virtual-microscope
Updating deab817..160d894
Previously merged:
- PR 20 jburel 'Build'
Merged PRs:
- PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/omero-web-zarr
Excluded PRs:
- PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
Updating 8f3c313..4e1e685
Previously merged:
- PR 23 lubianat 'Fix mix of .rst and .md on README'
- PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
Merged PRs:
- PR 21 will-moore 'Web zarr import'
Conflicting PRs (not included):
- PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
Repository: openmicroscopy/omero-weberror
Already up to date.
Merged PRs:
- PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: openmicroscopy/omero-webtest
Already up to date.
Merged PRs:
- PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
Repository: ome/rOMERO-gateway
Already up to date.
Repository: ome/scripts
Updating 4b4c755..5b4d768
Previously merged:
- PR 231 jburel 'Create Release '
- PR 229 Rdornier 'Adding support for custom user label'
- PR 223 will-moore 'don't attempt ROI stats on big images'
- PR 230 Rdornier 'Import from csv fix'
- PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
- PR 227 jburel 'Replace tostring by tobytes'
- PR 225 will-moore 'Fix param names and assertion texts in tests'
Merged PRs:
- PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
Generated by OMERO-plugins-push#38 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/38/)'
2026-08-11 01:44:31,624 [ scc.git] DEBUG [detached HEAD a1f4b3a] merge master -Dorg -Ssuccess-only
2026-08-11 01:44:31,624 [ scc.git] DEBUG 23 files changed, 44 insertions(+), 44 deletions(-)
2026-08-11 01:44:31,626 [ scc.merge] INFO Repository: ome/omero-plugins
2026-08-11 01:44:31,626 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,626 [ scc.merge] INFO
2026-08-11 01:44:31,626 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`'
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Repository: ome/minimal-omero-client
2026-08-11 01:44:31,627 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Repository: ome/omero-cli-duplicate
2026-08-11 01:44:31,627 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment)
2026-08-11 01:44:31,627 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Repository: ome/omero-cli-render
2026-08-11 01:44:31,627 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft)
2026-08-11 01:44:31,627 [ scc.merge] INFO Updating ce6e13c..68b7303
2026-08-11 01:44:31,627 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands'
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate'
2026-08-11 01:44:31,627 [ scc.merge] INFO
2026-08-11 01:44:31,627 [ scc.merge] INFO Repository: ome/omero-cli-zarr
2026-08-11 01:44:31,627 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' (status: failure)
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 181 will-moore 'Add labels support for import' (exclude comment)
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 170 will-moore 'Use ome zarr models py' (stage: draft)
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft)
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment)
2026-08-11 01:44:31,627 [ scc.merge] INFO Updating 11d3587..9f844b8
2026-08-11 01:44:31,627 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 186 jburel 'Create release from tag'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 180 will-moore 'Import command'
2026-08-11 01:44:31,627 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 147 will-moore 'Name option'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,628 [ scc.merge] INFO
2026-08-11 01:44:31,628 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed'
2026-08-11 01:44:31,628 [ scc.merge] INFO
2026-08-11 01:44:31,628 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 174 will-moore 'Skip wells'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"'
2026-08-11 01:44:31,628 [ scc.merge] INFO
2026-08-11 01:44:31,628 [ scc.merge] INFO Repository: ome/omero-figure
2026-08-11 01:44:31,628 [ scc.merge] INFO Updating 9cc36cde..18887279
2026-08-11 01:44:31,628 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 666 will-moore 'Standalone app'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 663 will-moore 'Zarr'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0'
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels '
2026-08-11 01:44:31,628 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 650 jburel 'Bump Python version'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 612 will-moore 'Script version'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 652 kaabl 'Add export option for PNG (72 dpi), fixes #394 '
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13'
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Repository: ome/omero-fpbioimage
2026-08-11 01:44:31,629 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 18 jburel 'default size z value'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Repository: ome/omero-gallery
2026-08-11 01:44:31,629 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3'
2026-08-11 01:44:31,629 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6'
2026-08-11 01:44:31,629 [ scc.merge] INFO
2026-08-11 01:44:31,629 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack'
2026-08-11 01:44:31,630 [ scc.merge] INFO
2026-08-11 01:44:31,630 [ scc.merge] INFO Repository: ome/omero-iviewer
2026-08-11 01:44:31,630 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment)
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment)
2026-08-11 01:44:31,630 [ scc.merge] INFO Updating 7a798cee..177e4b5e
2026-08-11 01:44:31,630 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 513 jburel 'Bump Python version'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra'
2026-08-11 01:44:31,630 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 546 will-moore 'Use POST data for saveImgRdef params'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 560 dependabot[bot] 'Bump brace-expansion'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Repository: ome/omero-mapr
2026-08-11 01:44:31,631 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment)
2026-08-11 01:44:31,631 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Repository: ome/omero-metadata
2026-08-11 01:44:31,631 [ scc.merge] INFO Updating 3cd120c..6a653e4
2026-08-11 01:44:31,631 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names'
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate'
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Repository: ome/omero-parade
2026-08-11 01:44:31,631 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft)
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment)
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment)
2026-08-11 01:44:31,631 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment)
2026-08-11 01:44:31,631 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,631 [ scc.merge] INFO
2026-08-11 01:44:31,631 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9'
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2'
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: ome/omero-prometheus-tools
2026-08-11 01:44:31,632 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: ome/omero-rois
2026-08-11 01:44:31,632 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot])
2026-08-11 01:44:31,632 [ scc.merge] INFO Updating bdfeb5e..fc9ff96
2026-08-11 01:44:31,632 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml'
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: ome/omero-signup
2026-08-11 01:44:31,632 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra
2026-08-11 01:44:31,632 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles)
2026-08-11 01:44:31,632 [ scc.merge] INFO Updating cda3ec6..c8a0015
2026-08-11 01:44:31,632 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT'
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 82 jburel 'Upgrade python'
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: ome/omero-upload
2026-08-11 01:44:31,632 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,632 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,632 [ scc.merge] INFO
2026-08-11 01:44:31,632 [ scc.merge] INFO Repository: ome/omero-virtual-microscope
2026-08-11 01:44:31,632 [ scc.merge] INFO Updating deab817..160d894
2026-08-11 01:44:31,633 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 20 jburel 'Build'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Repository: ome/omero-web-zarr
2026-08-11 01:44:31,633 [ scc.merge] INFO Excluded PRs:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft)
2026-08-11 01:44:31,633 [ scc.merge] INFO Updating 8f3c313..4e1e685
2026-08-11 01:44:31,633 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Conflicting PRs (not included):
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror
2026-08-11 01:44:31,633 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest
2026-08-11 01:44:31,633 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Repository: ome/rOMERO-gateway
2026-08-11 01:44:31,633 [ scc.merge] INFO Already up to date.
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Repository: ome/scripts
2026-08-11 01:44:31,633 [ scc.merge] INFO Updating 4b4c755..5b4d768
2026-08-11 01:44:31,633 [ scc.merge] INFO Previously merged:
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 231 jburel 'Create Release '
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes'
2026-08-11 01:44:31,633 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests'
2026-08-11 01:44:31,633 [ scc.merge] INFO
2026-08-11 01:44:31,633 [ scc.merge] INFO Merged PRs:
2026-08-11 01:44:31,634 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`'
2026-08-11 01:44:31,634 [ scc.merge] INFO
2026-08-11 01:44:31,634 [ scc.merge] DEBUG Cleaning remote branches created for merging
2026-08-11 01:44:31,634 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,686 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client
2026-08-11 01:44:31,686 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,741 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,741 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate
2026-08-11 01:44:31,741 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render
2026-08-11 01:44:31,782 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,803 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr
2026-08-11 01:44:31,803 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,819 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure
2026-08-11 01:44:31,819 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,837 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage
2026-08-11 01:44:31,837 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,852 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,853 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery
2026-08-11 01:44:31,853 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,867 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,868 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer
2026-08-11 01:44:31,868 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,884 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr
2026-08-11 01:44:31,884 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,899 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,899 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata
2026-08-11 01:44:31,899 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,914 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade
2026-08-11 01:44:31,914 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools
2026-08-11 01:44:31,929 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,946 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois
2026-08-11 01:44:31,946 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,960 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup
2026-08-11 01:44:31,960 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,974 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra
2026-08-11 01:44:31,974 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:31,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:31,991 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload
2026-08-11 01:44:31,992 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,008 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope
2026-08-11 01:44:32,008 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,021 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr
2026-08-11 01:44:32,021 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,034 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror
2026-08-11 01:44:32,034 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,049 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest
2026-08-11 01:44:32,050 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,063 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway
2026-08-11 01:44:32,063 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
2026-08-11 01:44:32,081 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts
2026-08-11 01:44:32,081 [ scc.git] DEBUG Calling 'git remote'
2026-08-11 01:44:32,094 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push
Update component versions
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer.
warnings.warn(
WARNING: The wheel package is not available.
WARNING: The wheel package is not available.
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '8.0.1.rc2' to '8.0.1rc2'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0'
warnings.warn(tmpl.format(**locals()))
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
WARNING: '' not a valid package name; please use only .-separated package names in setup.py
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
/home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory
Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT
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Commit all component version changes
Entering 'minimal-omero-client'
Entering 'omero-cli-duplicate'
Entering 'omero-cli-render'
Entering 'omero-cli-zarr'
Entering 'omero-figure'
Entering 'omero-fpbioimage'
Entering 'omero-gallery'
Entering 'omero-iviewer'
Entering 'omero-mapr'
Entering 'omero-metadata'
Entering 'omero-parade'
Entering 'omero-prometheus-tools'
Entering 'omero-rois'
Entering 'omero-signup'
Entering 'omero-test-infra'
Entering 'omero-upload'
Entering 'omero-virtual-microscope'
Entering 'omero-web-zarr'
Entering 'omero-weberror'
Entering 'omero-webtest'
Entering 'rOMERO-gateway'
Entering 'scripts'
Entering 'minimal-omero-client'
[detached HEAD 909864f] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Entering 'omero-cli-duplicate'
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Entering 'omero-cli-render'
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Entering 'omero-cli-zarr'
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.eggs/
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Entering 'omero-figure'
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Entering 'omero-prometheus-tools'
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Entering 'rOMERO-gateway'
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Entering 'scripts'
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[detached HEAD 1197732] Update component versions
1 file changed, 1 insertion(+), 1 deletion(-)
Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
2026-08-11 01:45:48,327 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919
Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
2026-08-11 01:45:59,004 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425
Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
2026-08-11 01:46:01,766 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383
Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-11 01:46:07,425 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545
2026-08-11 01:47:02,377 [ scc.push] INFO Merged branch pushed to https://github.com/snoopycrimecop/omero-plugins/tree/merge_ci
[Pipeline] archiveArtifacts
Archiving artifacts
[Pipeline] }
[Pipeline] // node
[Pipeline] End of Pipeline
Finished: SUCCESS