Started by upstream project "ha:////4PuJpIb7Sfk0tlXxIiPwuGUGFxyfYBTVf2KwutkHKFZpAAAAmR+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz2EgZe/az8JP2Qosz09NQifQAk1DzAwgAAAA==Trigger" build number ha:////4LuIZH8YWppbOSScIYDaF1cWz2lJez8PUGOq9PCW/w6uAAAAnB+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAzmEgYB/az8JP2Qosz09NQifUNDYwBHcxgdxQAAAA==113 originally caused by: Started by timer ha:////4HTUihXv1UkLksjmtWhSbl94iFdkXhh2blwpw3KAxOc4AAAAoh+LCAAAAAAAAP9tjTEOwjAQBM8BClpKHuFItIiK1krDC0x8GCfWnbEdkooX8TX+gCESFVvtrLSa5wtWKcKBo5UdUu8otU4GP9jS5Mixv3geZcdn2TIl9igbHBs2eJyx4YwwR1SwULBGaj0nRzbDRnX6rmuvydanHMu2V1A5c4MHCFXMWcf8hSnC9jqYxPTz/BXAFEIGsfuclm8zQVqFvQAAAA==[Pipeline] Start of Pipeline ha:////4LUm56pLCKEdN1M3W1Vx6wdbEcMAs3S6A4uqdHAZeBckAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycohUghExsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jduZBmjwAAAAA==[Pipeline] node Running on ha:////4MSFFwZhvKyaZKGejjoKFo+3SCj+z+JFRMNqFO6ZjC+wAAAAph+LCAAAAAAAAP9b85aBtbiIQTGjNKU4P08vOT+vOD8nVc83PyU1x6OyILUoJzMv2y+/JJUBAhiZGBgqihhk0NSjKDWzXb3RdlLBUSYGJk8GtpzUvPSSDB8G5tKinBIGIZ+sxLJE/ZzEvHT94JKizLx0a6BxUmjGOUNodHsLgAz+EgYp/eT83ILSktQi/ZLU4pLMvJLU9KLEksz8PH0Arhz8Fc8AAAA=testintegration in /home/omero/workspace/OMERO-plugins-push ha:////4PAfvbiSx1BM+6wzQ8G6PNMQvDtfCMV+N8HsmsrcdsUXAAAApR+LCAAAAAAAAP9tjTEOwjAUQ3+KOrAycoh0gA0xsUZZOEFIQkgb/d8mKe3EibgadyBQiQlLlmxL1nu+oE4RjhQdby12HpP2vA+jK4lPFLtroIm3dOGaMFGwXNpJkrGnpUrKFhaxClYC1hZ1oOTRZdiIVt1VExS65pxj2Q4CKm8GeAAThZxVzN8yR9jeRpMIf5y/AJj7DGxXvP/86jfoP95RwAAAAA==[Pipeline] { ha:////4Dzb5qtJUlnzIzW7t2RQn68FfuhNL/hX29L02FpQsfJOAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbaGWsbAmNJ0AWEZb8zwLrbuWJvJp3kLiJlZNMMm+a93rDOic4UbLcG+wdZu14DKOti0+U+lugiXu6ck2YKRguzSSpM+cFJRUDS1gDKwEbgzpQdmgLbIVXD9UGhba9lFS/o4DGdQM8gYlqLiqVL8wJdvexy4Q/z18BzLEA29ce4gdpL1fxvAAAAA==[Pipeline] library Loading library recursiveMerge@master Attempting to resolve master from remote references... > git --version # timeout=10 > git --version # 'git version 2.47.3' > git ls-remote -- https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Found match: refs/heads/master revision 654fab96d71411fab33e55b79057bcbf94eef8a2 The recommended git tool is: NONE No credentials specified > git rev-parse --resolve-git-dir /var/jenkins_home/jobs/OMERO-plugins-push/workspace@libs/e9d96de4efbb3e39a2ce24824e54985c7c2760a6ed46c5415ea0aa1fd1e18d41/.git # timeout=10 Fetching changes from the remote Git repository > git config remote.origin.url https://github.com/ome/jenkins-library-recursivemerge.git # timeout=10 Fetching without tags Fetching upstream changes from https://github.com/ome/jenkins-library-recursivemerge.git > git --version # timeout=10 > git --version # 'git version 2.47.3' > git fetch --no-tags --force --progress -- https://github.com/ome/jenkins-library-recursivemerge.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 654fab96d71411fab33e55b79057bcbf94eef8a2 (master) > git config core.sparsecheckout # timeout=10 > git checkout -f 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 Commit message: "Merge pull request #18 from jburel/python_311" > git rev-list --no-walk 654fab96d71411fab33e55b79057bcbf94eef8a2 # timeout=10 ha:////4BaW9sNJIwyT2yKg0U7mPVBB5a+kHAn8v9gRtMNIwZaGAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbGBtjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI4F2L72ED+qfHravAAAAA==[Pipeline] checkout The recommended git tool is: NONE No credentials specified Fetching changes from the remote Git repository > git rev-parse --resolve-git-dir /home/omero/workspace/OMERO-plugins-push/.git # timeout=10 > git config remote.origin.url https://github.com/ome/omero-plugins.git # timeout=10 Fetching upstream changes from https://github.com/ome/omero-plugins.git > git --version # timeout=10 > git --version # 'git version 2.52.0' > git fetch --tags --force --progress -- https://github.com/ome/omero-plugins.git +refs/heads/*:refs/remotes/origin/* # timeout=10 Checking out Revision 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c (refs/remotes/origin/master) > git rev-parse refs/remotes/origin/master^{commit} # timeout=10 > git config core.sparsecheckout # timeout=10 > git checkout -f 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Commit message: "Merge pull request #434 from will-moore/figure" > git rev-list --no-walk 6c8647e73bf88ae05d5ec656f70844a60f6b6e6c # timeout=10 Cleaning workspace > git rev-parse --verify HEAD # timeout=10 Resetting working tree > git reset --hard # timeout=10 > git clean -fdx # timeout=10 > git submodule foreach --recursive git reset --hard # timeout=10 > git submodule foreach --recursive git clean -fdx # timeout=10 > git remote # timeout=10 > git submodule init # timeout=10 > git submodule sync # timeout=10 > git config --get remote.origin.url # timeout=10 > git submodule init # timeout=10 > git config -f .gitmodules --get-regexp ^submodule\.(.+)\.url # timeout=10 > git config --get submodule.omero-figure.url # timeout=10 > git config -f .gitmodules --get submodule.omero-figure.path # timeout=10 > git config --get submodule.minimal-omero-client.url # timeout=10 > git config -f .gitmodules --get submodule.minimal-omero-client.path # timeout=10 > git config --get submodule.scripts.url # timeout=10 > git config -f .gitmodules --get submodule.scripts.path # timeout=10 > git config --get submodule.omero-test-infra.url # timeout=10 > git config -f .gitmodules --get submodule.omero-test-infra.path # timeout=10 > git config --get submodule.omero-prometheus-tools.url # timeout=10 > git config -f .gitmodules --get submodule.omero-prometheus-tools.path # timeout=10 > git config --get submodule.omero-parade.url # timeout=10 > git config -f .gitmodules --get submodule.omero-parade.path # timeout=10 > git config --get submodule.omero-mapr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-mapr.path # timeout=10 > git config --get submodule.omero-fpbioimage.url # timeout=10 > git config -f .gitmodules --get submodule.omero-fpbioimage.path # timeout=10 > git config --get submodule.omero-iviewer.url # timeout=10 > git config -f .gitmodules --get submodule.omero-iviewer.path # timeout=10 > git config --get submodule.omero-gallery.url # timeout=10 > git config -f .gitmodules --get submodule.omero-gallery.path # timeout=10 > git config --get submodule.rOMERO-gateway.url # timeout=10 > git config -f .gitmodules --get submodule.rOMERO-gateway.path # timeout=10 > git config --get submodule.omero-weberror.url # timeout=10 > git config -f .gitmodules --get submodule.omero-weberror.path # timeout=10 > git config --get submodule.omero-cli-render.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-render.path # timeout=10 > git config --get submodule.omero-cli-duplicate.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-duplicate.path # timeout=10 > git config --get submodule.omero-metadata.url # timeout=10 > git config -f .gitmodules --get submodule.omero-metadata.path # timeout=10 > git config --get submodule.omero-webtest.url # timeout=10 > git config -f .gitmodules --get submodule.omero-webtest.path # timeout=10 > git config --get submodule.omero-upload.url # timeout=10 > git config -f .gitmodules --get submodule.omero-upload.path # timeout=10 > git config --get submodule.omero-virtual-microscope.url # timeout=10 > git config -f .gitmodules --get submodule.omero-virtual-microscope.path # timeout=10 > git config --get submodule.omero-rois.url # timeout=10 > git config -f .gitmodules --get submodule.omero-rois.path # timeout=10 > git config --get submodule.omero-signup.url # timeout=10 > git config -f .gitmodules --get submodule.omero-signup.path # timeout=10 > git config --get submodule.omero-web-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-web-zarr.path # timeout=10 > git config --get submodule.omero-cli-zarr.url # timeout=10 > git config -f .gitmodules --get submodule.omero-cli-zarr.path # timeout=10 > git config --get submodule.figure.url # timeout=10 > git config -f .gitmodules --get submodule.figure.path # timeout=10 > git submodule update --init --recursive omero-figure # timeout=10 > git submodule update --init --recursive minimal-omero-client # timeout=10 > git submodule update --init --recursive scripts # timeout=10 > git submodule update --init --recursive omero-test-infra # timeout=10 > git submodule update --init --recursive omero-prometheus-tools # timeout=10 > git submodule update --init --recursive omero-parade # timeout=10 > git submodule update --init --recursive omero-mapr # timeout=10 > git submodule update --init --recursive omero-fpbioimage # timeout=10 > git submodule update --init --recursive omero-iviewer # timeout=10 > git submodule update --init --recursive omero-gallery # timeout=10 > git submodule update --init --recursive rOMERO-gateway # timeout=10 > git submodule update --init --recursive omero-weberror # timeout=10 > git submodule update --init --recursive omero-cli-render # timeout=10 > git submodule update --init --recursive omero-cli-duplicate # timeout=10 > git submodule update --init --recursive omero-metadata # timeout=10 > git submodule update --init --recursive omero-webtest # timeout=10 > git submodule update --init --recursive omero-upload # timeout=10 > git submodule update --init --recursive omero-virtual-microscope # timeout=10 > git submodule update --init --recursive omero-rois # timeout=10 > git submodule update --init --recursive omero-signup # timeout=10 > git submodule update --init --recursive omero-web-zarr # timeout=10 > git submodule update --init --recursive omero-cli-zarr # timeout=10 > git submodule update --init --recursive figure # timeout=10 ha:////4HtGHKCBI3lXNxIxXxu9PNo3kmnkDSbGo8Iq83TF5aq+AAAAox+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbmFgYK1tC4wmQRYQl/7PAult5Iq/mHSRuYuUkk8yb5r3esM4JTpQs9wZ7h1k7HsNo6+ITpf4WaOKerlwTZgqGSzNJ6sx5QUnFwBLWwErAxqAOlB3aAlvh1UO1QaFtLyXV7yigcd0AT2CimotK5Qtzgt197DLhz/NXAHMswPa1h/gB601hw7wAAAA=[Pipeline] pwd ha:////4N4syVtrk/i8A48xce2CWghNNMx5z8MnPR/zdyCR3m2PAAAAox+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTbWJgYK1tC4wmQRYQl/7PAult5Iq/mHSRuYuUkk8yb5r3esM4JTpQs9wZ7h1k7HsNo6+ITpf4WaOKerlwTZgqGSzNJ6sx5QUnFwBLWwErAxqAOlB3aAlvh1UO1QaFtLyXV7yigcd0AT2CimotK5Qtzgt197DLhz/NXAHMswPa1h/gBJFH5RLwAAAA=[Pipeline] copyArtifacts Copied 1 artifact from "ha:////4DaJC+M5EfsAIEhli2FZkAbLMG99mlF4qVSn3J8cNsJlAAAAlx+LCAAAAAAAAP9b85aBtbiIQSajNKU4P08vOT+vOD8nVc+jsiC1KCczL9svvyTVzHb1RttJBUeZGJg8GdhyUvPSSzJ8GJhLi3JKGIR8shLLEvVzEvPS9YNLijLz0q0rihik0IxzhtAgwxgggJGJgaGiAMgQKGEQ08/KT9L393UN8tdNKs3MSdEtKC3O0AcABZ8Yd5sAAAA=OMERO-build-push" build number ha:////4NuX+elcBW7lhu98Jkgeba5K8cIwcfz0M9ASl4z0EnK2AAAAmh+LCAAAAAAAAP9b85aBtbiIQSajNKU4P08vOT+vOD8nVc+jsiC1KCczL9svvyTVzHb1RttJBUeZGJg8GdhyUvPSSzJ8GJhLi3JKGIR8shLLEvVzEvPS9YNLijLz0q0rihik0IxzhtAgwxgggJGJgaGiAMhgKmGQ1M/KT9L393UN8tdNKs3MSdEtKC3O0Lc01gcArPoSpZ4AAAA=93 ha:////4PwOkyg/VPPc/0KCMJsynfCEttAHwNHGn5xgB/qz9e5KAAAAoh+LCAAAAAAAAP9tjTEOAiEURD9rLGwtPQTb2BhjZUtoPAGyiLDkfxZYdytP5NW8g8RNrJxkknnTvNcb1jnBiZLl3mDvMGvHYxhtXXyi1N8CTdzTlWvCTMFwaSZJnTkvKKkYWMIaWAnYGNSBskNbYCu8eqg2KLTtpaT6HQU0rhvgCUxUc1GpfGFOsLuPXSb8ef4KYI4F2L72ED9lYOJdvAAAAA==[Pipeline] sh + pushd build ~/workspace/OMERO-plugins-push/build ~/workspace/OMERO-plugins-push + tar -zxf - + curl -sfL https://github.com/ome/build-infra/archive/master.tar.gz + popd ~/workspace/OMERO-plugins-push + python3.11 -m venv build/venv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + python3.11 -m pip install -U pip Requirement already satisfied: pip in ./build/venv/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.2.1-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.2.1 + python3.11 -m pip install scc Collecting scc Using cached scc-0.20.0-py3-none-any.whl.metadata (3.6 kB) Collecting PyGithub>=1.54 (from scc) Using cached pygithub-2.10.0-py3-none-any.whl.metadata (3.9 kB) Collecting PyYAML>=5.1 (from scc) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Collecting future (from scc) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting ruamel.yaml (from scc) Using cached ruamel_yaml-0.19.1-py3-none-any.whl.metadata (16 kB) Collecting ruamel.yaml.jinja2 (from scc) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl.metadata (2.9 kB) Collecting six (from scc) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Collecting urllib3<2 (from scc) Using cached urllib3-1.26.20-py2.py3-none-any.whl.metadata (50 kB) Collecting yaclifw<0.3,>=0.2.0 (from scc) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting pynacl>=1.4.0 (from PyGithub>=1.54->scc) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl.metadata (10.0 kB) Collecting requests>=2.14.0 (from PyGithub>=1.54->scc) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting pyjwt>=2.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pyjwt-2.15.1-py3-none-any.whl.metadata (3.5 kB) Collecting typing-extensions>=4.5.0 (from PyGithub>=1.54->scc) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting cryptography>=3.4.0 (from pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cryptography-50.0.1-cp311-abi3-manylinux_2_34_x86_64.whl.metadata (4.3 kB) Collecting cffi>=2.0.0 (from cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (2.5 kB) Collecting pycparser (from cffi>=2.0.0->cryptography>=3.4.0->pyjwt[crypto]>=2.4.0->PyGithub>=1.54->scc) Using cached pycparser-3.0-py3-none-any.whl.metadata (8.2 kB) Collecting charset_normalizer<4,>=2 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (45 kB) Collecting idna<4,>=2.5 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached idna-3.20-py3-none-any.whl.metadata (7.2 kB) Collecting certifi>=2023.5.7 (from requests>=2.14.0->PyGithub>=1.54->scc) Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Using cached scc-0.20.0-py3-none-any.whl (48 kB) Using cached urllib3-1.26.20-py2.py3-none-any.whl (144 kB) Using cached pygithub-2.10.0-py3-none-any.whl (455 kB) Using cached pyjwt-2.15.1-py3-none-any.whl (33 kB) Using cached cryptography-50.0.1-cp311-abi3-manylinux_2_34_x86_64.whl (4.7 MB) Using cached cffi-2.1.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (217 kB) Using cached pynacl-1.6.2-cp38-abi3-manylinux_2_34_x86_64.whl (1.4 MB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached charset_normalizer-3.5.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (262 kB) Using cached idna-3.20-py3-none-any.whl (69 kB) Using cached certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached pycparser-3.0-py3-none-any.whl (48 kB) Using cached ruamel_yaml-0.19.1-py3-none-any.whl (118 kB) Using cached ruamel.yaml.jinja2-0.2.7-py2.py3-none-any.whl (5.5 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: urllib3, typing-extensions, six, ruamel.yaml, PyYAML, pyjwt, pycparser, idna, future, charset_normalizer, certifi, yaclifw, ruamel.yaml.jinja2, requests, cffi, pynacl, cryptography, PyGithub, scc Successfully installed PyGithub-2.10.0 PyYAML-6.0.3 certifi-2026.7.22 cffi-2.1.1 charset_normalizer-3.5.1 cryptography-50.0.1 future-1.0.0 idna-3.20 pycparser-3.0 pyjwt-2.15.1 pynacl-1.6.2 requests-2.34.2 ruamel.yaml-0.19.1 ruamel.yaml.jinja2-0.2.7 scc-0.20.0 six-1.17.0 typing-extensions-4.16.0 urllib3-1.26.20 yaclifw-0.2.0 ha:////4FTuqBt9TkbQKM2Voi7cdmAQcXNecZSQqXy1NuSXKbQOAAAAox+LCAAAAAAAAP9tjTEOwjAQBDdBFLSUPMIBiQ5R0VppeIFJjHFi3QX7QlLxIr7GH4iIRMVWO9PM641lijhydKqx1HpKlVdd6N301MCxvQYeVMMXVTElDlaVdii5tqcZSxaLeVmOhcbKUhU4eXKCtW7MwxTBkCvOEid30Mh9fccTmZ7KYqJ8YYzY3Po6Mf06fwMYO0G2F+S7bfcBVVhdU70AAAA=[Pipeline] sh + export BASE_REPO=omero-plugins.git + BASE_REPO=omero-plugins.git + export BASE_BRANCH=master + BASE_BRANCH=master + export VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + VERSION_LOG=/home/omero/workspace/OMERO-plugins-push/build/version.tsv + . build/venv/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-plugins-push/build/venv ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-plugins-push/build/venv/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(venv) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(venv) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + '[' merge_ci '!=' null ']' + export PUSH_BRANCH=merge_ci + PUSH_BRANCH=merge_ci + '[' null '!=' null ']' + export STATUS=success-only 'MERGE_OPTIONS=-vvv --no-ask --reset --comment' + STATUS=success-only + MERGE_OPTIONS='-vvv --no-ask --reset --comment' + bash build/build-infra-master/recursive-merge Merge base repository (no submodule updates) 2026-09-28 23:42:09,392 [ scc.config] DEBUG Found github.token 2026-09-28 23:42:09,394 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-09-28 23:42:09,634 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:10,073 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:10,509 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-09-28 23:42:10,510 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:09 2026-09-28 23:42:10,511 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:42:10,521 [ scc.git] DEBUG Check current status 2026-09-28 23:42:10,521 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:42:10,546 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-09-28 23:42:10,547 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:42:10,761 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-28 23:42:10,853 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-28 23:42:10,893 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-28 23:42:10,930 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-28 23:42:10,979 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-28 23:42:11,085 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-09-28 23:42:11,135 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-28 23:42:11,185 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-28 23:42:11,262 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-09-28 23:42:11,326 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-28 23:42:11,383 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-28 23:42:11,441 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-28 23:42:11,482 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-28 23:42:11,531 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-28 23:42:11,582 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-28 23:42:11,624 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-28 23:42:11,661 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-28 23:42:11,714 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-28 23:42:11,782 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-28 23:42:11,850 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-28 23:42:11,887 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-28 23:42:11,924 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-28 23:42:11,947 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-09-28 23:42:11,958 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:42:12,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-09-28 23:42:12,747 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:42:13,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:42:13,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:42:14,101 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:42:14,103 [ scc.git] DEBUG Resetting... 2026-09-28 23:42:14,103 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-09-28 23:42:14,420 [ scc.git] DEBUG HEAD is now at 6c8647e Merge pull request #434 from will-moore/figure 2026-09-28 23:42:14,421 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-09-28 23:42:15,653 [ scc.git] DEBUG Check current status 2026-09-28 23:42:15,653 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:42:15,673 [ scc.git] DEBUG 6c8647e Merge pull request #434 from will-moore/figure 2026-09-28 23:42:15,674 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:42:15,903 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-28 23:42:15,976 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-28 23:42:16,006 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-28 23:42:16,039 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-28 23:42:16,082 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-28 23:42:16,143 [ scc.git] DEBUG fb316a7ee6ca8aa5bc8dc55dd0acfa88fe3ca228 omero-figure (v7.2.0-1-gfb316a7e) 2026-09-28 23:42:16,173 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-28 23:42:16,207 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-28 23:42:16,276 [ scc.git] DEBUG b4102d46958a805cacff0c7ccceb05ccff746309 omero-iviewer (v0.15.0-1-gb4102d46) 2026-09-28 23:42:16,320 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-28 23:42:16,365 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-28 23:42:16,405 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-28 23:42:16,443 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-28 23:42:16,483 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-28 23:42:16,522 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-28 23:42:16,570 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-28 23:42:16,612 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-28 23:42:16,660 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-28 23:42:16,698 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-28 23:42:16,736 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-28 23:42:16,774 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-28 23:42:16,811 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-28 23:42:16,835 [ scc.git] DEBUG 312afbed633613e1f728a1fe9eaac096e54318e0 scripts (v5.8.3-1-g312afbe) 2026-09-28 23:42:16,837 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-09-28 23:42:16,837 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-09-28 23:42:16,837 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-09-28 23:42:16,837 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-09-28 23:42:16,837 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-09-28 23:42:16,837 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:42:17,336 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-09-28 23:42:17,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-09-28 23:42:17,842 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:42:17,842 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-28 23:42:18,356 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-09-28 23:42:18,356 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:42:18,356 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-28 23:42:18,871 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-09-28 23:42:18,872 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:42:18,872 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-28 23:42:18,872 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:42:18,872 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:42:18,872 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:18,884 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:42:18,898 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:42:18,898 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:42:18,920 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:42:18,968 [ scc.git] DEBUG Already up to date. 2026-09-28 23:42:18,968 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-09-28 23:42:19,455 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:42:19,455 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-09-28 23:42:19,491 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-09-28 23:42:19,934 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:42:19,934 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-09-28 23:42:19,968 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-09-28 23:42:20,428 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:42:20,428 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-09-28 23:42:20,463 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:42:20,463 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:42:20,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:20,476 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-28 23:42:20,505 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:20,517 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-28 23:42:21,196 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:42:21,259 [ scc.git] DEBUG scripts | 2 +- 2026-09-28 23:42:21,259 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:42:21,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:21,439 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-28 23:42:21,475 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:21,486 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-28 23:42:22,152 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:42:22,217 [ scc.git] DEBUG omero-figure | 2 +- 2026-09-28 23:42:22,217 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:42:22,390 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:22,391 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-28 23:42:22,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:22,436 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Snone: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-28 23:42:23,184 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:42:23,240 [ scc.git] DEBUG omero-iviewer | 2 +- 2026-09-28 23:42:23,240 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:42:23,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:23,437 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:42:24,297 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-09-28 23:42:25,425 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-09-28 23:42:25,743 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-09-28 23:42:25,744 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:42:25,744 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:42:25,757 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:42:28,453 [ scc.git] DEBUG has no local changes 2026-09-28 23:42:28,453 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Snone Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:42:29,902 [ scc.git] DEBUG [detached HEAD 8c05ad3] merge master -Dorg -Snone 2026-09-28 23:42:29,905 [ scc.merge] INFO Repository: ome/omero-plugins 2026-09-28 23:42:29,905 [ scc.merge] INFO Already up to date. 2026-09-28 23:42:29,905 [ scc.merge] INFO 2026-09-28 23:42:29,905 [ scc.merge] INFO Merged PRs: 2026-09-28 23:42:29,905 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-28 23:42:29,905 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-28 23:42:29,905 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-28 23:42:29,905 [ scc.merge] INFO 2026-09-28 23:42:29,905 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-09-28 23:42:29,905 [ scc.git] DEBUG Calling 'git remote' Synchronizing submodule url for 'figure' Synchronizing submodule url for 'minimal-omero-client' Synchronizing submodule url for 'omero-cli-duplicate' Synchronizing submodule url for 'omero-cli-render' Synchronizing submodule url for 'omero-cli-zarr' Synchronizing submodule url for 'omero-figure' Synchronizing submodule url for 'omero-fpbioimage' Synchronizing submodule url for 'omero-gallery' Synchronizing submodule url for 'omero-iviewer' Synchronizing submodule url for 'omero-mapr' Synchronizing submodule url for 'omero-metadata' Synchronizing submodule url for 'omero-parade' Synchronizing submodule url for 'omero-prometheus-tools' Synchronizing submodule url for 'omero-rois' Synchronizing submodule url for 'omero-signup' Synchronizing submodule url for 'omero-test-infra' Synchronizing submodule url for 'omero-upload' Synchronizing submodule url for 'omero-virtual-microscope' Synchronizing submodule url for 'omero-web-zarr' Synchronizing submodule url for 'omero-weberror' Synchronizing submodule url for 'omero-webtest' Synchronizing submodule url for 'rOMERO-gateway' Synchronizing submodule url for 'scripts' Submodule path 'figure': checked out '833a7e159c736ad8f3b3238f7f2ed28ae1461a38' Submodule path 'omero-cli-render': checked out '68b73035cf2ab21ddd92022b80bda0966547b3c8' From https://github.com/ome/omero-cli-zarr + acdbe2d...b9b1524 pre-commit-ci-update-config -> origin/pre-commit-ci-update-config (forced update) Submodule path 'omero-cli-zarr': checked out 'd5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' Submodule path 'omero-figure': checked out '3195c3df4e7bf2507d9c942d5d8c9a8566498147' Submodule path 'omero-iviewer': checked out '6c554250ea1528ff339ac06c3fe1e0621fe48576' Submodule path 'omero-metadata': checked out '6a653e49e3589ccb463166506896639f6f0a5a2b' From https://github.com/ome/omero-rois + 3afcc4d...02fe48e pre-commit-ci-update-config -> origin/pre-commit-ci-update-config (forced update) Submodule path 'omero-rois': checked out 'fc9ff96901ce7b92e3ba51327ba7ba64fff76959' Submodule path 'omero-test-infra': checked out 'c8a0015b0ce72ee0a49e6968af33de10ea00bc77' Submodule path 'omero-virtual-microscope': checked out '160d894dfb61e69618903425b340c7888f3a934f' Submodule path 'omero-web-zarr': checked out '4e1e685dff22136abfd2626f6fd6eaf985aba368' Submodule path 'scripts': checked out '5b4d76862a7141257c9ff221ff7f009f7ec416c0' Merge all submodules using repository configuration: base-branch: master submodules: scripts: base-branch: develop omero-web-zarr: base-branch: main 2026-09-28 23:42:54,188 [ scc.config] DEBUG Found github.token 2026-09-28 23:42:54,190 [urllib3.conn] DEBUG Starting new HTTPS connection (1): api.github.com:443 2026-09-28 23:42:54,434 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:54,865 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:42:55,333 [urllib3.conn] DEBUG https://api.github.com:443 "GET /rate_limit HTTP/1.1" 200 None 2026-09-28 23:42:55,334 [ scc.gh] DEBUG 5000 remaining from 5000 (Reset at 00:09 2026-09-28 23:42:55,334 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:42:55,346 [ scc.git] DEBUG Check current status 2026-09-28 23:42:55,346 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:42:55,381 [ scc.git] DEBUG 8c05ad3 merge master -Dorg -Snone 2026-09-28 23:42:55,382 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:42:55,630 [ scc.git] DEBUG +833a7e159c736ad8f3b3238f7f2ed28ae1461a38 figure (remotes/origin/HEAD) 2026-09-28 23:42:55,725 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-28 23:42:55,769 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-28 23:42:55,811 [ scc.git] DEBUG +68b73035cf2ab21ddd92022b80bda0966547b3c8 omero-cli-render (v0.8.1-28-g68b7303) 2026-09-28 23:42:55,864 [ scc.git] DEBUG +d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 omero-cli-zarr (v0.9.0-1-gd5f88d8) 2026-09-28 23:42:55,938 [ scc.git] DEBUG +3195c3df4e7bf2507d9c942d5d8c9a8566498147 omero-figure (v8.0.1-1-g3195c3df) 2026-09-28 23:42:55,978 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-28 23:42:56,018 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-28 23:42:56,100 [ scc.git] DEBUG +6c554250ea1528ff339ac06c3fe1e0621fe48576 omero-iviewer (v0.19.0-1-g6c554250) 2026-09-28 23:42:56,143 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-28 23:42:56,197 [ scc.git] DEBUG +6a653e49e3589ccb463166506896639f6f0a5a2b omero-metadata (v0.14.0-2-g6a653e4) 2026-09-28 23:42:56,240 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-28 23:42:56,283 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-28 23:42:56,327 [ scc.git] DEBUG +fc9ff96901ce7b92e3ba51327ba7ba64fff76959 omero-rois (v0.4.1-1-gfc9ff96) 2026-09-28 23:42:56,367 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-28 23:42:56,407 [ scc.git] DEBUG +c8a0015b0ce72ee0a49e6968af33de10ea00bc77 omero-test-infra (v0.6.3-67-gc8a0015) 2026-09-28 23:42:56,448 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-28 23:42:56,488 [ scc.git] DEBUG +160d894dfb61e69618903425b340c7888f3a934f omero-virtual-microscope (v1.1.1-12-g160d894) 2026-09-28 23:42:56,530 [ scc.git] DEBUG +4e1e685dff22136abfd2626f6fd6eaf985aba368 omero-web-zarr (v0.1.1-13-g4e1e685) 2026-09-28 23:42:56,571 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-28 23:42:56,613 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-28 23:42:56,654 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-28 23:42:56,682 [ scc.git] DEBUG +5b4d76862a7141257c9ff221ff7f009f7ec416c0 scripts (v5.10.0-1-g5b4d768) 2026-09-28 23:42:56,694 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:42:56,694 [ scc.git] DEBUG Reading repository configuration from repositories.yml 2026-09-28 23:42:56,697 [ scc.git] DEBUG Repository configuration: base-branch: master submodules: omero-web-zarr: base-branch: main scripts: base-branch: develop 2026-09-28 23:42:56,988 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins HTTP/1.1" 200 None 2026-09-28 23:42:57,483 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:42:57,935 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:42:58,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:42:58,878 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:42:58,879 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:42:59,085 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-28 23:42:59,086 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:42:59,100 [ scc.git] DEBUG Check current status 2026-09-28 23:42:59,100 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:42:59,128 [ scc.git] DEBUG 833a7e1 Merge pull request #14 from will-moore/app_served_by_omero_env 2026-09-28 23:42:59,129 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:42:59,264 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:42:59,546 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure HTTP/1.1" 200 None 2026-09-28 23:43:00,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:00,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:00,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:01,417 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:01,419 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:01,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:01,535 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-28 23:43:01,535 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:01,547 [ scc.git] DEBUG Check current status 2026-09-28 23:43:01,548 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:01,567 [ scc.git] DEBUG ca8c2ea Merge pull request #67 from jburel/gateway_5_10_0 2026-09-28 23:43:01,568 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:01,695 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:01,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client HTTP/1.1" 200 None 2026-09-28 23:43:02,466 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:02,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:03,424 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:03,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:03,883 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:04,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:04,009 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-28 23:43:04,009 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:04,024 [ scc.git] DEBUG Check current status 2026-09-28 23:43:04,025 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:04,049 [ scc.git] DEBUG 4777ef8 Merge pull request #27 from jburel/build 2026-09-28 23:43:04,051 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:04,191 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:04,489 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate HTTP/1.1" 200 None 2026-09-28 23:43:06,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:06,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:06,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:07,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:07,343 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:07,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:07,473 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-28 23:43:07,474 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:07,490 [ scc.git] DEBUG Check current status 2026-09-28 23:43:07,491 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:07,515 [ scc.git] DEBUG 68b7303 Merge pull request #74 from jburel/changelog2ghrelease 2026-09-28 23:43:07,516 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:07,649 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:07,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render HTTP/1.1" 200 None 2026-09-28 23:43:08,469 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:08,927 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:09,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:09,862 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:09,863 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:09,985 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:09,986 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-28 23:43:09,987 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:10,001 [ scc.git] DEBUG Check current status 2026-09-28 23:43:10,001 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:10,022 [ scc.git] DEBUG d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-28 23:43:10,022 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:10,145 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:10,651 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr HTTP/1.1" 200 None 2026-09-28 23:43:11,361 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:11,820 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:12,273 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:12,730 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:12,731 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:12,850 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:12,851 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-28 23:43:12,851 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:12,865 [ scc.git] DEBUG Check current status 2026-09-28 23:43:12,865 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:12,896 [ scc.git] DEBUG 3195c3df Bump version: 8.0.1 → 8.0.2.dev0 2026-09-28 23:43:12,899 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:13,011 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:13,290 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure HTTP/1.1" 200 None 2026-09-28 23:43:13,792 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:14,239 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:14,703 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:15,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:15,157 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:15,271 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:15,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-28 23:43:15,272 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:15,287 [ scc.git] DEBUG Check current status 2026-09-28 23:43:15,287 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:15,307 [ scc.git] DEBUG 3b6c05a Merge pull request #30 from jburel/build 2026-09-28 23:43:15,307 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:15,437 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:15,749 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage HTTP/1.1" 200 None 2026-09-28 23:43:16,254 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:16,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:17,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:17,659 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:17,661 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:17,782 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:17,783 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-28 23:43:17,783 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:17,796 [ scc.git] DEBUG Check current status 2026-09-28 23:43:17,796 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:17,814 [ scc.git] DEBUG 2a621da Merge pull request #112 from jburel/build 2026-09-28 23:43:17,815 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:17,937 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:18,221 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery HTTP/1.1" 200 None 2026-09-28 23:43:18,759 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:19,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:19,736 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:20,197 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:20,198 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:20,319 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:20,320 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-28 23:43:20,321 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:20,337 [ scc.git] DEBUG Check current status 2026-09-28 23:43:20,337 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:20,364 [ scc.git] DEBUG 6c554250 add dev 2026-09-28 23:43:20,366 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:20,489 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:20,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer HTTP/1.1" 200 None 2026-09-28 23:43:21,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:21,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:22,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:22,653 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:22,655 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:22,776 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:22,777 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-28 23:43:22,777 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:22,791 [ scc.git] DEBUG Check current status 2026-09-28 23:43:22,791 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:22,815 [ scc.git] DEBUG 0a557da Bump version: 0.5.3 → 0.5.4.dev0 2026-09-28 23:43:22,816 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:22,946 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:23,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr HTTP/1.1" 200 None 2026-09-28 23:43:23,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:24,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:24,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:25,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:25,122 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:25,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:25,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-28 23:43:25,239 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:25,252 [ scc.git] DEBUG Check current status 2026-09-28 23:43:25,252 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:25,275 [ scc.git] DEBUG 6a653e4 Fix workflow permission indentation 2026-09-28 23:43:25,275 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:25,401 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:25,694 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata HTTP/1.1" 200 None 2026-09-28 23:43:26,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:26,646 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:27,094 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:27,556 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:27,557 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:27,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:27,672 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-28 23:43:27,672 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:27,685 [ scc.git] DEBUG Check current status 2026-09-28 23:43:27,685 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:27,705 [ scc.git] DEBUG fb5ae86 Merge pull request #133 from jburel/build 2026-09-28 23:43:27,706 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:27,824 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:28,107 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade HTTP/1.1" 200 None 2026-09-28 23:43:28,603 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:29,086 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:29,542 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:29,974 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:29,975 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:30,095 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:30,096 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-28 23:43:30,097 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:30,124 [ scc.git] DEBUG Check current status 2026-09-28 23:43:30,124 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:30,146 [ scc.git] DEBUG eb47378 Merge pull request #15 from jburel/build 2026-09-28 23:43:30,147 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:30,285 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:30,597 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools HTTP/1.1" 200 None 2026-09-28 23:43:31,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:31,512 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:31,979 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:32,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:32,434 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:32,568 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:32,569 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-28 23:43:32,570 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:32,586 [ scc.git] DEBUG Check current status 2026-09-28 23:43:32,586 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:32,607 [ scc.git] DEBUG fc9ff96 Bump version: 0.4.1 → 0.4.2.dev0 2026-09-28 23:43:32,608 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:32,749 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:33,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois HTTP/1.1" 200 None 2026-09-28 23:43:33,538 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:33,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:34,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:34,863 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:34,864 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:34,992 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:34,993 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-28 23:43:34,994 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:35,009 [ scc.git] DEBUG Check current status 2026-09-28 23:43:35,009 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:35,031 [ scc.git] DEBUG be76813 Merge pull request #21 from jburel/build 2026-09-28 23:43:35,032 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:35,164 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:35,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup HTTP/1.1" 200 None 2026-09-28 23:43:35,942 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:36,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:36,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:37,298 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:37,300 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:37,425 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:37,426 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-28 23:43:37,427 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:37,442 [ scc.git] DEBUG Check current status 2026-09-28 23:43:37,443 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:37,464 [ scc.git] DEBUG c8a0015 Merge pull request #84 from joshmoore/fix-port-readme 2026-09-28 23:43:37,466 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:37,601 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:37,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-test-infra HTTP/1.1" 301 198 Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-28 23:43:37,830 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-28 23:43:38,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/111908919 HTTP/1.1" 200 None 2026-09-28 23:43:38,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:39,081 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:39,564 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:40,024 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:40,026 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:40,155 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:40,156 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-28 23:43:40,157 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:40,172 [ scc.git] DEBUG Check current status 2026-09-28 23:43:40,172 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:40,194 [ scc.git] DEBUG 100f6ae Merge pull request #13 from jburel/build 2026-09-28 23:43:40,196 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:40,325 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:40,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload HTTP/1.1" 200 None 2026-09-28 23:43:41,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:41,523 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:41,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:42,423 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:42,424 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:42,549 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:42,550 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-28 23:43:42,558 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:42,573 [ scc.git] DEBUG Check current status 2026-09-28 23:43:42,574 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:42,594 [ scc.git] DEBUG 160d894 Fix display of code 2026-09-28 23:43:42,595 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:42,725 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:43,049 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope HTTP/1.1" 200 None 2026-09-28 23:43:43,536 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:43,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:44,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:44,937 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:44,939 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:45,055 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:45,056 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-28 23:43:45,056 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:45,070 [ scc.git] DEBUG Check current status 2026-09-28 23:43:45,071 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:45,089 [ scc.git] DEBUG 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-09-28 23:43:45,090 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:45,216 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:45,217 [ scc.git] DEBUG Repository configuration: base-branch: main 2026-09-28 23:43:45,485 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr HTTP/1.1" 200 None 2026-09-28 23:43:45,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:46,450 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:46,903 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:47,389 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:47,390 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:47,496 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:47,497 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-28 23:43:47,497 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:47,512 [ scc.git] DEBUG Check current status 2026-09-28 23:43:47,512 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:47,531 [ scc.git] DEBUG 70b01ed Merge pull request #24 from jburel/build 2026-09-28 23:43:47,532 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:47,676 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:48,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-weberror HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-28 23:43:48,071 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-28 23:43:48,352 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/38373425 HTTP/1.1" 200 None 2026-09-28 23:43:48,842 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:49,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:49,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:50,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:50,186 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:50,301 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:50,302 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-28 23:43:50,302 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:50,316 [ scc.git] DEBUG Check current status 2026-09-28 23:43:50,316 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:50,335 [ scc.git] DEBUG 5bfef29 Merge pull request #36 from jburel/build 2026-09-28 23:43:50,336 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:50,463 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:50,670 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/openmicroscopy/omero-webtest HTTP/1.1" 301 197 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-28 23:43:50,670 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-28 23:43:50,970 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/25970383 HTTP/1.1" 200 None 2026-09-28 23:43:51,528 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:51,978 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:52,425 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:53,062 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:53,064 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:53,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:53,191 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-28 23:43:53,192 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:53,208 [ scc.git] DEBUG Check current status 2026-09-28 23:43:53,208 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:53,229 [ scc.git] DEBUG 7b5d64d Merge pull request #106 from dominikl/add_examples_2 2026-09-28 23:43:53,230 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:53,354 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:53,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway HTTP/1.1" 200 None 2026-09-28 23:43:54,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:54,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:55,019 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:55,457 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:55,458 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:55,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:55,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-28 23:43:55,583 [ scc.git] DEBUG Calling 'git rev-parse --show-toplevel' 2026-09-28 23:43:55,598 [ scc.git] DEBUG Check current status 2026-09-28 23:43:55,598 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:43:55,622 [ scc.git] DEBUG 5b4d768 Bump version: 5.10.0 → 5.10.1.dev0 2026-09-28 23:43:55,624 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:43:55,756 [ scc.config] DEBUG Found remote.origin.url 2026-09-28 23:43:55,756 [ scc.git] DEBUG Repository configuration: base-branch: develop 2026-09-28 23:43:55,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/scripts HTTP/1.1" 301 196 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-28 23:43:55,954 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-28 23:43:56,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/4865545 HTTP/1.1" 200 None 2026-09-28 23:43:56,813 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome HTTP/1.1" 200 None 2026-09-28 23:43:57,262 [urllib3.conn] DEBUG https://api.github.com:443 "GET /orgs/ome/members HTTP/1.1" 200 None 2026-09-28 23:43:57,725 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=2 HTTP/1.1" 200 None 2026-09-28 23:43:58,177 [urllib3.conn] DEBUG https://api.github.com:443 "GET /organizations/1831717/members?page=3 HTTP/1.1" 200 None 2026-09-28 23:43:58,179 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:43:58,310 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:43:58,310 [ scc.git] DEBUG Resetting... 2026-09-28 23:43:58,310 [ scc.git] DEBUG Calling 'git reset --hard HEAD' 2026-09-28 23:43:58,703 [ scc.git] DEBUG HEAD is now at 8c05ad3 merge master -Dorg -Snone 2026-09-28 23:43:58,705 [ scc.git] DEBUG Calling 'git submodule update --recursive' 2026-09-28 23:43:59,303 [ scc.git] DEBUG Submodule path 'figure': checked out '393587512d75ac33d3e750a46847ab074bfb435f' 2026-09-28 23:43:59,684 [ scc.git] DEBUG Submodule path 'omero-cli-render': checked out 'ce6e13cfea3157cab0d00fde40f6cc8158946264' 2026-09-28 23:44:00,228 [ scc.git] DEBUG Submodule path 'omero-cli-zarr': checked out '11d35873542022d9638ede115d0dfab4652f8e62' 2026-09-28 23:44:01,507 [ scc.git] DEBUG Submodule path 'omero-figure': checked out '9cc36cde05bde4def7b62b07c2e9ae5f66712e96' 2026-09-28 23:44:02,617 [ scc.git] DEBUG Submodule path 'omero-iviewer': checked out '7a798ceeb3926d049d73788555fb63269a071052' 2026-09-28 23:44:03,026 [ scc.git] DEBUG Submodule path 'omero-metadata': checked out '3cd120cf6f10f71421a4db91fa87baba865c7997' 2026-09-28 23:44:03,446 [ scc.git] DEBUG Submodule path 'omero-rois': checked out 'bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9' 2026-09-28 23:44:03,774 [ scc.git] DEBUG Submodule path 'omero-test-infra': checked out 'cda3ec65052d6933052c8683d080677c6c33dc73' 2026-09-28 23:44:04,079 [ scc.git] DEBUG Submodule path 'omero-virtual-microscope': checked out 'deab81790f403bef598915b89b5300258b44a743' 2026-09-28 23:44:04,328 [ scc.git] DEBUG Submodule path 'omero-web-zarr': checked out '8f3c31388de8a7c44f18a6f0e20ea41d35fae041' 2026-09-28 23:44:04,805 [ scc.git] DEBUG Submodule path 'scripts': checked out '4b4c755af4ccf8a5e709548d1f8415fab48a4867' 2026-09-28 23:44:04,826 [ scc.git] DEBUG Check current status 2026-09-28 23:44:04,826 [ scc.git] DEBUG Calling 'git log --oneline -n 1 HEAD' 2026-09-28 23:44:04,846 [ scc.git] DEBUG 8c05ad3 merge master -Dorg -Snone 2026-09-28 23:44:04,846 [ scc.git] DEBUG Calling 'git submodule status' 2026-09-28 23:44:05,061 [ scc.git] DEBUG 393587512d75ac33d3e750a46847ab074bfb435f figure (heads/master) 2026-09-28 23:44:05,138 [ scc.git] DEBUG ca8c2ea435592cba45b857cc536815b082c5982b minimal-omero-client (heads/master) 2026-09-28 23:44:05,171 [ scc.git] DEBUG 4777ef8a2eeff2eb06474a89c8ce591e5b1f2a96 omero-cli-duplicate (v0.4.0-20-g4777ef8) 2026-09-28 23:44:05,204 [ scc.git] DEBUG ce6e13cfea3157cab0d00fde40f6cc8158946264 omero-cli-render (v0.8.1-18-gce6e13c) 2026-09-28 23:44:05,252 [ scc.git] DEBUG 11d35873542022d9638ede115d0dfab4652f8e62 omero-cli-zarr (v0.5.5-12-g11d3587) 2026-09-28 23:44:05,313 [ scc.git] DEBUG 9cc36cde05bde4def7b62b07c2e9ae5f66712e96 omero-figure (v7.2.1-3-g9cc36cde) 2026-09-28 23:44:05,345 [ scc.git] DEBUG 3b6c05abc6a7357bf9ef0d7b90ca578d8e327c7a omero-fpbioimage (v0.4.1-8-g3b6c05a) 2026-09-28 23:44:05,378 [ scc.git] DEBUG 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd omero-gallery (v3.4.3-8-g2a621da) 2026-09-28 23:44:05,440 [ scc.git] DEBUG 7a798ceeb3926d049d73788555fb63269a071052 omero-iviewer (v0.16.0-14-g7a798cee) 2026-09-28 23:44:05,476 [ scc.git] DEBUG 0a557da89145e65db313c1721a26cb43e490dd8a omero-mapr (v0.5.3-1-g0a557da) 2026-09-28 23:44:05,513 [ scc.git] DEBUG 3cd120cf6f10f71421a4db91fa87baba865c7997 omero-metadata (v0.13.0-6-g3cd120c) 2026-09-28 23:44:05,549 [ scc.git] DEBUG fb5ae86bde41d34018ff4da10991a34b29e61f4b omero-parade (v0.2.4-14-gfb5ae86) 2026-09-28 23:44:05,579 [ scc.git] DEBUG eb4737837b6d5fe6e807add66c8c43027166deac omero-prometheus-tools (v0.2.3-12-geb47378) 2026-09-28 23:44:05,616 [ scc.git] DEBUG bdfeb5e9212840e8c5fe24ca012f137f6d36a7d9 omero-rois (v0.2.0-76-gbdfeb5e) 2026-09-28 23:44:05,650 [ scc.git] DEBUG be76813540a02082196cac2ffee151e3f68cb71e omero-signup (v0.3.3-7-gbe76813) 2026-09-28 23:44:05,684 [ scc.git] DEBUG cda3ec65052d6933052c8683d080677c6c33dc73 omero-test-infra (v0.6.3-60-gcda3ec6) 2026-09-28 23:44:05,717 [ scc.git] DEBUG 100f6ae42e2c955ffb7cd1e854eb82079476119b omero-upload (v0.4.0-13-g100f6ae) 2026-09-28 23:44:05,748 [ scc.git] DEBUG deab81790f403bef598915b89b5300258b44a743 omero-virtual-microscope (v1.1.1-5-gdeab817) 2026-09-28 23:44:05,779 [ scc.git] DEBUG 8f3c31388de8a7c44f18a6f0e20ea41d35fae041 omero-web-zarr (v0.1.1-8-g8f3c313) 2026-09-28 23:44:05,812 [ scc.git] DEBUG 70b01edc650d59445c1b8508e86c29ab069b2b8f omero-weberror (v0.4.1-9-g70b01ed) 2026-09-28 23:44:05,844 [ scc.git] DEBUG 5bfef29ba742e31ae89cbcb42e328f6a6d2d39dd omero-webtest (v0.4.2-7-g5bfef29) 2026-09-28 23:44:05,876 [ scc.git] DEBUG 7b5d64d3cdf825a6952b40d5b2f550d8d794b0a9 rOMERO-gateway (v0.4.11-14-g7b5d64d) 2026-09-28 23:44:05,897 [ scc.git] DEBUG 4b4c755af4ccf8a5e709548d1f8415fab48a4867 scripts (v5.9.0-1-g4b4c755) 2026-09-28 23:44:05,898 [ scc.merge] INFO Merging Pull Request(s) based on master 2026-09-28 23:44:05,898 [ scc.merge] INFO Including Pull Request(s) opened by any public member of the organization 2026-09-28 23:44:05,898 [ scc.merge] INFO Including Pull Request(s) labelled as include or dependencies 2026-09-28 23:44:05,898 [ scc.merge] INFO Excluding Pull Request(s) staged as draft 2026-09-28 23:44:05,898 [ scc.merge] INFO Excluding Pull Request(s) labelled as exclude or breaking 2026-09-28 23:44:05,898 [ scc.merge] INFO Excluding Pull Request(s) without successful status 2026-09-28 23:44:05,898 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:06,186 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/pulls HTTP/1.1" 200 None 2026-09-28 23:44:06,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/433 HTTP/1.1" 200 None 2026-09-28 23:44:06,693 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:44:07,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:07,925 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:08,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/6fd5dc72efc90d7f749b332dba3f903414852d74?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:08,860 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/6fd5dc72efc90d7f749b332dba3f903414852d74?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:44:08,861 [ scc.repo] DEBUG - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-28 23:44:09,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/432 HTTP/1.1" 200 None 2026-09-28 23:44:09,372 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:44:09,972 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:10,480 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:10,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/25bf90a85a7e0945e652f9d78050c8c4860acb51?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:11,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/25bf90a85a7e0945e652f9d78050c8c4860acb51?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:44:11,433 [ scc.repo] DEBUG - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-28 23:44:11,953 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/issues/429 HTTP/1.1" 200 None 2026-09-28 23:44:11,954 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:44:12,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:13,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:13,589 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/commits/3062fb487d55aef3602ecee795b63ccb73d1f8e2?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:14,032 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-plugins/statuses/3062fb487d55aef3602ecee795b63ccb73d1f8e2?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:44:14,032 [ scc.repo] DEBUG - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-28 23:44:14,033 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:44:14,033 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:14,033 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:14,046 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:44:14,063 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:44:14,063 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:44:14,094 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:44:14,157 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:14,158 [ scc.git] DEBUG Calling 'git fetch origin pull/429/head' 2026-09-28 23:44:14,659 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:44:14,659 [ scc.git] DEBUG * branch refs/pull/429/head -> FETCH_HEAD 2026-09-28 23:44:14,694 [ scc.git] DEBUG Calling 'git fetch origin pull/432/head' 2026-09-28 23:44:15,178 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:44:15,178 [ scc.git] DEBUG * branch refs/pull/432/head -> FETCH_HEAD 2026-09-28 23:44:15,211 [ scc.git] DEBUG Calling 'git fetch origin pull/433/head' 2026-09-28 23:44:15,706 [ scc.git] DEBUG From https://github.com/ome/omero-plugins 2026-09-28 23:44:15,706 [ scc.git] DEBUG * branch refs/pull/433/head -> FETCH_HEAD 2026-09-28 23:44:15,741 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:44:15,742 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:15,742 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:15,753 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-28 23:44:15,779 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:15,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 429 (Bump scripts from `312afbe` to `4b4c755`) 3062fb487d55aef3602ecee795b63ccb73d1f8e2' 2026-09-28 23:44:15,851 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:16,035 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:16,035 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-28 23:44:16,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:16,082 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 432 (Bump omero-figure from `fb316a7` to `9cc36cd`) 25bf90a85a7e0945e652f9d78050c8c4860acb51' 2026-09-28 23:44:16,146 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:16,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:16,487 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-28 23:44:16,519 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:16,531 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 433 (Bump omero-iviewer from `b4102d4` to `7a798ce`) 6fd5dc72efc90d7f749b332dba3f903414852d74' 2026-09-28 23:44:16,592 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:16,913 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:16,914 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:44:17,796 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:17,796 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:17,807 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:18,182 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls HTTP/1.1" 200 None 2026-09-28 23:44:18,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/20 HTTP/1.1" 200 None 2026-09-28 23:44:19,183 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/20/comments HTTP/1.1" 200 None 2026-09-28 23:44:19,843 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:20,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:20,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:21,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/f129f75a30e3d732f002677638200861b6cb8ec3?per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:21,897 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:22,398 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/f129f75a30e3d732f002677638200861b6cb8ec3/status HTTP/1.1" 200 None 2026-09-28 23:44:22,399 [ scc.repo] DEBUG - PR 20 will-moore 'Hide export dropdown unless omero' 2026-09-28 23:44:22,910 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/19 HTTP/1.1" 200 None 2026-09-28 23:44:23,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/19/comments HTTP/1.1" 200 None 2026-09-28 23:44:23,411 [ scc.repo] DEBUG # ... Include label: include 2026-09-28 23:44:23,959 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:24,498 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:24,961 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:25,433 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/565be8a9abdb7501409d6523e77e60d463298045?per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:25,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:26,374 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/565be8a9abdb7501409d6523e77e60d463298045/status HTTP/1.1" 200 None 2026-09-28 23:44:26,374 [ scc.repo] DEBUG - PR 19 Rdornier 'Fix rectangle crop' 2026-09-28 23:44:26,850 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12 HTTP/1.1" 200 None 2026-09-28 23:44:27,377 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/12/comments HTTP/1.1" 200 None 2026-09-28 23:44:27,866 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9 HTTP/1.1" 200 None 2026-09-28 23:44:28,371 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/9/comments HTTP/1.1" 200 None 2026-09-28 23:44:28,869 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5 HTTP/1.1" 200 None 2026-09-28 23:44:29,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/issues/5/comments HTTP/1.1" 200 None 2026-09-28 23:44:30,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:30,679 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:31,159 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:31,623 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/statuses/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:32,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:32,601 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/commits/ee5c65c3a69567451a595dea213b01b0e2e9b6ce/status HTTP/1.1" 200 None 2026-09-28 23:44:32,602 [ scc.repo] DEBUG - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-09-28 23:44:32,602 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:44:32,602 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-28 23:44:32,603 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:32,603 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:32,622 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:44:32,642 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:44:32,642 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:44:32,677 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:44:33,214 [ scc.git] DEBUG Updating 3935875..833a7e1 2026-09-28 23:44:34,185 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/14 HTTP/1.1" 200 None 2026-09-28 23:44:34,949 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/17 HTTP/1.1" 200 None 2026-09-28 23:44:35,856 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/figure/pulls/15 HTTP/1.1" 200 None 2026-09-28 23:44:35,956 [ scc.git] DEBUG Calling 'git fetch origin pull/5/head' 2026-09-28 23:44:36,564 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-28 23:44:36,564 [ scc.git] DEBUG * branch refs/pull/5/head -> FETCH_HEAD 2026-09-28 23:44:36,595 [ scc.git] DEBUG Calling 'git fetch origin pull/19/head' 2026-09-28 23:44:37,170 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-28 23:44:37,170 [ scc.git] DEBUG * branch refs/pull/19/head -> FETCH_HEAD 2026-09-28 23:44:37,208 [ scc.git] DEBUG Calling 'git fetch origin pull/20/head' 2026-09-28 23:44:37,863 [ scc.git] DEBUG From https://github.com/ome/figure 2026-09-28 23:44:37,863 [ scc.git] DEBUG * branch refs/pull/20/head -> FETCH_HEAD 2026-09-28 23:44:37,891 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:44:37,891 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:37,891 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:37,906 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ee5c65c3a69567451a595dea213b01b0e2e9b6ce' 2026-09-28 23:44:37,973 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:37,986 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 5 (Add sample_figures/ngff_images_figure.json) ee5c65c3a69567451a595dea213b01b0e2e9b6ce' 2026-09-28 23:44:38,366 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:44:38,458 [ scc.git] DEBUG sample_figures/ngff_images_figure.json | 3243 ++++++++++++++++++++++++++++++++ 2026-09-28 23:44:38,458 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 4 +- 2026-09-28 23:44:38,458 [ scc.git] DEBUG 2 files changed, 3245 insertions(+), 2 deletions(-) 2026-09-28 23:44:38,458 [ scc.git] DEBUG create mode 100644 sample_figures/ngff_images_figure.json 2026-09-28 23:44:38,655 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:38,656 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...565be8a9abdb7501409d6523e77e60d463298045' 2026-09-28 23:44:38,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:38,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 19 (Fix rectangle crop) 565be8a9abdb7501409d6523e77e60d463298045' 2026-09-28 23:44:39,119 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:44:39,208 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 2 +- 2026-09-28 23:44:39,209 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:44:39,407 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:39,407 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f129f75a30e3d732f002677638200861b6cb8ec3' 2026-09-28 23:44:39,497 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:39,513 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 20 (Hide export dropdown unless omero) f129f75a30e3d732f002677638200861b6cb8ec3' 2026-09-28 23:44:39,855 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:44:39,955 [ scc.git] DEBUG src/index.html | 6 +++--- 2026-09-28 23:44:39,955 [ scc.git] DEBUG src/js/views/figure_view.js | 8 ++++---- 2026-09-28 23:44:39,955 [ scc.git] DEBUG 2 files changed, 7 insertions(+), 7 deletions(-) 2026-09-28 23:44:40,141 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:40,141 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:44:40,277 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:40,277 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:40,292 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:44:40,424 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:44:40,527 [ scc.git] DEBUG has no local changes 2026-09-28 23:44:40,527 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..833a7e1 Previously merged: - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 19 Rdornier 'Fix rectangle crop' - PR 20 will-moore 'Hide export dropdown unless omero' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:44:40,688 [ scc.git] DEBUG [detached HEAD 03cd082] merge master -Dorg -Ssuccess-only 2026-09-28 23:44:40,691 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:44:40,691 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:40,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/minimal-omero-client/pulls HTTP/1.1" 200 2 2026-09-28 23:44:40,902 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:44:40,902 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-28 23:44:40,902 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:40,902 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:40,920 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:44:40,941 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:44:40,941 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:44:40,976 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:44:41,043 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:41,044 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:44:41,044 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:41,044 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:41,065 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:44:41,203 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:41,203 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:41,219 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:44:41,348 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:44:41,408 [ scc.git] DEBUG has no local changes 2026-09-28 23:44:41,408 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/minimal-omero-client Already up to date. Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:44:41,552 [ scc.git] DEBUG [detached HEAD 4331782] merge master -Dorg -Ssuccess-only 2026-09-28 23:44:41,554 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:44:41,555 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:41,875 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/pulls HTTP/1.1" 200 None 2026-09-28 23:44:42,368 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/29 HTTP/1.1" 200 None 2026-09-28 23:44:42,369 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:44:42,962 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:43,537 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:44,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:44:44,574 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/commits/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:45,048 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/statuses/ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:44:45,049 [ scc.repo] DEBUG - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:44:45,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18 HTTP/1.1" 200 None 2026-09-28 23:44:46,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-duplicate/issues/18/comments HTTP/1.1" 200 None 2026-09-28 23:44:46,104 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:44:46,104 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-28 23:44:46,104 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:46,104 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:46,123 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:44:46,143 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:44:46,143 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:44:46,166 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:44:46,225 [ scc.git] DEBUG Already up to date. 2026-09-28 23:44:46,226 [ scc.git] DEBUG Calling 'git fetch origin pull/29/head' 2026-09-28 23:44:46,708 [ scc.git] DEBUG From https://github.com/ome/omero-cli-duplicate 2026-09-28 23:44:46,708 [ scc.git] DEBUG * branch refs/pull/29/head -> FETCH_HEAD 2026-09-28 23:44:46,736 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:44:46,737 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:46,737 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:46,751 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-09-28 23:44:46,773 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:46,786 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 29 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) ecc1cff31695b7f097b2174b8cc7c6c45aa6aaf4' 2026-09-28 23:44:46,952 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:44:47,037 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:44:47,037 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:44:47,240 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:47,241 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:44:47,377 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:47,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:47,392 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:44:47,512 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:44:47,556 [ scc.git] DEBUG has no local changes 2026-09-28 23:44:47,556 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:44:47,681 [ scc.git] DEBUG [detached HEAD bd5d55f] merge master -Dorg -Ssuccess-only 2026-09-28 23:44:47,683 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:44:47,683 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:48,089 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls HTTP/1.1" 200 None 2026-09-28 23:44:48,558 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59 HTTP/1.1" 200 None 2026-09-28 23:44:49,059 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/59/comments HTTP/1.1" 200 None 2026-09-28 23:44:49,654 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:50,188 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:44:50,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:44:51,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/commits/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?page=1 HTTP/1.1" 200 None 2026-09-28 23:44:51,734 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/statuses/38c5fff61b004cd2efee36b3f5c034d2b8f01c99?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:44:51,734 [ scc.repo] DEBUG - PR 59 will-moore 'Apply settings to Plate' 2026-09-28 23:44:52,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52 HTTP/1.1" 200 None 2026-09-28 23:44:52,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/issues/52/comments HTTP/1.1" 200 None 2026-09-28 23:44:52,709 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:44:52,709 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-28 23:44:52,710 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:52,710 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:52,729 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:44:52,750 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:44:52,750 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:44:52,777 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:44:52,956 [ scc.git] DEBUG Updating ce6e13c..68b7303 2026-09-28 23:44:53,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/74 HTTP/1.1" 200 None 2026-09-28 23:44:54,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/75 HTTP/1.1" 200 None 2026-09-28 23:44:55,093 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/71 HTTP/1.1" 200 None 2026-09-28 23:44:55,838 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-render/pulls/69 HTTP/1.1" 200 None 2026-09-28 23:44:55,839 [ scc.git] DEBUG Calling 'git fetch origin pull/59/head' 2026-09-28 23:44:56,549 [ scc.git] DEBUG From https://github.com/ome/omero-cli-render 2026-09-28 23:44:56,549 [ scc.git] DEBUG * branch refs/pull/59/head -> FETCH_HEAD 2026-09-28 23:44:56,579 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:44:56,579 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:56,579 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:56,593 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-09-28 23:44:56,647 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:56,665 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 59 (Apply settings to Plate) 38c5fff61b004cd2efee36b3f5c034d2b8f01c99' 2026-09-28 23:44:56,830 [ scc.git] DEBUG Auto-merging src/omero_cli_render.py 2026-09-28 23:44:56,912 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:44:56,986 [ scc.git] DEBUG src/omero_cli_render.py | 170 ++++++++++++++++++++++++++++-------------------- 2026-09-28 23:44:56,986 [ scc.git] DEBUG 1 file changed, 101 insertions(+), 69 deletions(-) 2026-09-28 23:44:57,152 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:44:57,153 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:44:57,294 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:44:57,294 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:44:57,310 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:44:57,437 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:44:57,504 [ scc.git] DEBUG has no local changes 2026-09-28 23:44:57,504 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:44:57,655 [ scc.git] DEBUG [detached HEAD 1a8d024] merge master -Dorg -Ssuccess-only 2026-09-28 23:44:57,657 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:44:57,657 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:44:58,018 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls HTTP/1.1" 200 None 2026-09-28 23:44:58,524 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178 HTTP/1.1" 200 None 2026-09-28 23:44:59,001 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/178/comments HTTP/1.1" 200 None 2026-09-28 23:44:59,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:00,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:45:00,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:45:01,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:01,681 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/f99a6a6869bf6259376adaea157f24955c9aa3ae?per_page=1 HTTP/1.1" 200 None 2026-09-28 23:45:02,175 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:02,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/f99a6a6869bf6259376adaea157f24955c9aa3ae/status HTTP/1.1" 200 None 2026-09-28 23:45:02,787 [ scc.repo] DEBUG - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-09-28 23:45:03,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174 HTTP/1.1" 200 None 2026-09-28 23:45:03,851 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/174/comments HTTP/1.1" 200 None 2026-09-28 23:45:04,451 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:05,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:45:05,705 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:45:06,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:06,656 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/statuses/e795ce506487fad5c1184c909aaa1dab9a30401c?per_page=1 HTTP/1.1" 200 None 2026-09-28 23:45:07,135 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:07,643 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/commits/e795ce506487fad5c1184c909aaa1dab9a30401c/status HTTP/1.1" 200 None 2026-09-28 23:45:07,644 [ scc.repo] DEBUG - PR 174 will-moore 'Skip wells' 2026-09-28 23:45:08,139 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/166 HTTP/1.1" 200 None 2026-09-28 23:45:08,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/162 HTTP/1.1" 200 None 2026-09-28 23:45:09,173 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123 HTTP/1.1" 200 None 2026-09-28 23:45:09,701 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/issues/123/comments HTTP/1.1" 200 None 2026-09-28 23:45:10,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/256245946/issues/123/comments?page=2 HTTP/1.1" 200 None 2026-09-28 23:45:10,209 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:45:10,209 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-28 23:45:10,210 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:45:10,210 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:10,231 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:45:10,252 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:45:10,252 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:45:10,514 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:45:10,979 [ scc.git] DEBUG Updating 11d3587..d5f88d8 2026-09-28 23:45:11,562 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/193 HTTP/1.1" 200 None 2026-09-28 23:45:12,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/182 HTTP/1.1" 200 None 2026-09-28 23:45:13,213 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/194 HTTP/1.1" 200 None 2026-09-28 23:45:14,055 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/197 HTTP/1.1" 200 None 2026-09-28 23:45:14,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/196 HTTP/1.1" 200 None 2026-09-28 23:45:15,722 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/172 HTTP/1.1" 200 None 2026-09-28 23:45:16,706 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/192 HTTP/1.1" 200 None 2026-09-28 23:45:17,454 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/186 HTTP/1.1" 200 None 2026-09-28 23:45:18,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/187 HTTP/1.1" 200 None 2026-09-28 23:45:19,148 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/180 HTTP/1.1" 200 None 2026-09-28 23:45:19,938 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/179 HTTP/1.1" 200 None 2026-09-28 23:45:20,711 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/177 HTTP/1.1" 200 None 2026-09-28 23:45:21,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/175 HTTP/1.1" 200 None 2026-09-28 23:45:22,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/147 HTTP/1.1" 200 None 2026-09-28 23:45:23,229 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/173 HTTP/1.1" 200 None 2026-09-28 23:45:24,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/171 HTTP/1.1" 200 None 2026-09-28 23:45:24,853 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-cli-zarr/pulls/168 HTTP/1.1" 200 None 2026-09-28 23:45:24,854 [ scc.git] DEBUG Calling 'git fetch origin pull/174/head' 2026-09-28 23:45:25,676 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-09-28 23:45:25,676 [ scc.git] DEBUG * branch refs/pull/174/head -> FETCH_HEAD 2026-09-28 23:45:25,704 [ scc.git] DEBUG Calling 'git fetch origin pull/178/head' 2026-09-28 23:45:26,321 [ scc.git] DEBUG From https://github.com/ome/omero-cli-zarr 2026-09-28 23:45:26,321 [ scc.git] DEBUG * branch refs/pull/178/head -> FETCH_HEAD 2026-09-28 23:45:26,348 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:45:26,348 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:45:26,348 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:26,361 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-28 23:45:26,455 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:26,472 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 174 (Skip wells) e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging README.rst 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging src/omero_zarr/cli.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/cli.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging src/omero_zarr/raw_pixels.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/raw_pixels.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging src/omero_zarr/util.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/util.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-09-28 23:45:26,941 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-09-28 23:45:26,971 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:45:26,973 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:45:27,020 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-28 23:45:27,260 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-28 23:45:27,444 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:45:27,445 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 e795ce506487fad5c1184c909aaa1dab9a30401c' 2026-09-28 23:45:27,531 [ scc.git] DEBUG Calling 'git diff --name-only 37ea7000309b4f8b87c5122c138fb59b17ecf86b..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-28 23:45:27,570 [ scc.git] INFO - PR 174 will-moore 'Skip wells' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_zarr/util.py - test/integration/clitest/test_export.py - src/omero_zarr/cli.py - src/omero_zarr/masks.py - src/omero_zarr/raw_pixels.py --conflicts 2026-09-28 23:45:27,585 [ scc.config] DEBUG Found github.token 2026-09-28 23:45:27,585 [ scc.git] DEBUG Not adding comment to issue #174, already --conflicts. 2026-09-28 23:45:27,585 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-28 23:45:27,680 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:27,696 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 178 (Fix export of masks with multi-theC as multi-channel labels) f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-28 23:45:27,986 [ scc.git] DEBUG Auto-merging src/omero_zarr/masks.py 2026-09-28 23:45:27,986 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_zarr/masks.py 2026-09-28 23:45:27,986 [ scc.git] DEBUG Auto-merging test/integration/clitest/test_export.py 2026-09-28 23:45:27,986 [ scc.git] DEBUG CONFLICT (content): Merge conflict in test/integration/clitest/test_export.py 2026-09-28 23:45:28,012 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:45:28,013 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:45:28,045 [ scc.git] DEBUG Calling 'git reset --hard d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-28 23:45:28,242 [ scc.git] DEBUG HEAD is now at d5f88d8 Bump version: 0.9.0 → 0.9.1.dev0 2026-09-28 23:45:28,477 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:45:28,478 [ scc.git] DEBUG Calling 'git merge-base d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82 f99a6a6869bf6259376adaea157f24955c9aa3ae' 2026-09-28 23:45:28,544 [ scc.git] DEBUG Calling 'git diff --name-only 9530c10ba9823fcba6b39139987bf4bcd4a60179..d5f88d80a2b1a3eacda64b591e1cfe6df4f51a82' 2026-09-28 23:45:28,575 [ scc.git] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #174 will-moore 'Skip wells' - src/omero_zarr/masks.py - test/integration/clitest/test_export.py - Upstream changes - src/omero_zarr/masks.py - test/integration/clitest/test_export.py --conflicts 2026-09-28 23:45:28,589 [ scc.config] DEBUG Found github.token 2026-09-28 23:45:28,590 [ scc.git] DEBUG Not adding comment to issue #178, already --conflicts. 2026-09-28 23:45:28,590 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:45:28,725 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:45:28,725 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:28,740 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:45:28,869 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:45:28,942 [ scc.git] DEBUG has no local changes 2026-09-28 23:45:28,942 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:45:29,121 [ scc.git] DEBUG [detached HEAD fa418b9] merge master -Dorg -Ssuccess-only 2026-09-28 23:45:29,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:45:29,123 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:45:29,573 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls HTTP/1.1" 200 None 2026-09-28 23:45:30,078 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706 HTTP/1.1" 200 None 2026-09-28 23:45:30,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/issues/706/comments HTTP/1.1" 200 None 2026-09-28 23:45:31,154 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:31,731 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:45:32,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:45:32,720 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/commits/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?page=1 HTTP/1.1" 200 None 2026-09-28 23:45:33,167 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/statuses/d5fb705652bca5db75b24fb3e9421f3be09e9fa3?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:45:33,167 [ scc.repo] DEBUG - PR 706 will-moore 'Figure repo migration' 2026-09-28 23:45:33,167 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:45:33,167 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-28 23:45:33,168 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:45:33,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:45:33,192 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:45:33,226 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:45:33,226 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:45:34,142 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:45:35,734 [ scc.git] ERROR stderr (git merge --ff-only origin/master): Updating files: 96% (79/82) Updating files: 97% (80/82) Updating files: 98% (81/82) Updating files: 100% (82/82) Updating files: 100% (82/82), done. 2026-09-28 23:45:35,734 [ scc.git] DEBUG Updating 9cc36cde..3195c3df 2026-09-28 23:45:36,288 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/704 HTTP/1.1" 200 None 2026-09-28 23:45:37,072 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/703 HTTP/1.1" 200 None 2026-09-28 23:45:37,861 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/700 HTTP/1.1" 200 None 2026-09-28 23:45:38,611 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/692 HTTP/1.1" 200 None 2026-09-28 23:45:39,395 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/701 HTTP/1.1" 200 None 2026-09-28 23:45:40,103 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/698 HTTP/1.1" 200 None 2026-09-28 23:45:40,889 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/697 HTTP/1.1" 200 None 2026-09-28 23:45:41,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/695 HTTP/1.1" 200 None 2026-09-28 23:45:42,463 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/693 HTTP/1.1" 200 None 2026-09-28 23:45:43,181 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/691 HTTP/1.1" 200 None 2026-09-28 23:45:44,096 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/686 HTTP/1.1" 200 None 2026-09-28 23:45:44,946 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/690 HTTP/1.1" 200 None 2026-09-28 23:45:45,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/681 HTTP/1.1" 200 None 2026-09-28 23:45:46,606 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/688 HTTP/1.1" 200 None 2026-09-28 23:45:47,445 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/685 HTTP/1.1" 200 None 2026-09-28 23:45:48,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/683 HTTP/1.1" 200 None 2026-09-28 23:45:49,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/680 HTTP/1.1" 200 None 2026-09-28 23:45:50,028 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/684 HTTP/1.1" 200 None 2026-09-28 23:45:50,823 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/682 HTTP/1.1" 200 None 2026-09-28 23:45:51,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/679 HTTP/1.1" 200 None 2026-09-28 23:45:52,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/677 HTTP/1.1" 200 None 2026-09-28 23:45:53,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/666 HTTP/1.1" 200 None 2026-09-28 23:45:54,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/676 HTTP/1.1" 200 None 2026-09-28 23:45:54,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/669 HTTP/1.1" 200 None 2026-09-28 23:45:55,941 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/662 HTTP/1.1" 200 None 2026-09-28 23:45:56,833 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/663 HTTP/1.1" 200 None 2026-09-28 23:45:57,713 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/674 HTTP/1.1" 200 None 2026-09-28 23:45:58,431 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/675 HTTP/1.1" 200 None 2026-09-28 23:45:59,140 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/671 HTTP/1.1" 200 None 2026-09-28 23:45:59,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/672 HTTP/1.1" 200 None 2026-09-28 23:46:00,773 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/667 HTTP/1.1" 200 None 2026-09-28 23:46:01,628 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/665 HTTP/1.1" 200 None 2026-09-28 23:46:02,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/656 HTTP/1.1" 200 None 2026-09-28 23:46:03,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/670 HTTP/1.1" 200 None 2026-09-28 23:46:05,301 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/664 HTTP/1.1" 200 None 2026-09-28 23:46:06,132 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/654 HTTP/1.1" 200 None 2026-09-28 23:46:07,090 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/648 HTTP/1.1" 200 None 2026-09-28 23:46:08,095 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/661 HTTP/1.1" 200 None 2026-09-28 23:46:08,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/649 HTTP/1.1" 200 None 2026-09-28 23:46:09,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/657 HTTP/1.1" 200 None 2026-09-28 23:46:10,625 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/637 HTTP/1.1" 200 None 2026-09-28 23:46:11,594 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/600 HTTP/1.1" 200 None 2026-09-28 23:46:12,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/653 HTTP/1.1" 200 None 2026-09-28 23:46:13,199 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/651 HTTP/1.1" 200 None 2026-09-28 23:46:13,983 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/650 HTTP/1.1" 200 None 2026-09-28 23:46:14,738 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/647 HTTP/1.1" 200 None 2026-09-28 23:46:15,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/610 HTTP/1.1" 200 None 2026-09-28 23:46:16,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/644 HTTP/1.1" 200 None 2026-09-28 23:46:17,082 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/646 HTTP/1.1" 200 None 2026-09-28 23:46:17,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/612 HTTP/1.1" 200 None 2026-09-28 23:46:18,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/630 HTTP/1.1" 200 None 2026-09-28 23:46:19,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/616 HTTP/1.1" 200 None 2026-09-28 23:46:20,728 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/605 HTTP/1.1" 200 None 2026-09-28 23:46:21,530 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/638 HTTP/1.1" 200 None 2026-09-28 23:46:22,277 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/633 HTTP/1.1" 200 None 2026-09-28 23:46:23,034 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/635 HTTP/1.1" 200 None 2026-09-28 23:46:23,852 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/623 HTTP/1.1" 200 None 2026-09-28 23:46:24,613 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-figure/pulls/631 HTTP/1.1" 200 None 2026-09-28 23:46:24,614 [ scc.git] DEBUG Calling 'git fetch origin pull/706/head' 2026-09-28 23:46:25,217 [ scc.git] DEBUG From https://github.com/ome/omero-figure 2026-09-28 23:46:25,217 [ scc.git] DEBUG * branch refs/pull/706/head -> FETCH_HEAD 2026-09-28 23:46:25,242 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:46:25,242 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:25,242 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:25,256 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-09-28 23:46:25,408 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:25,421 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 706 (Figure repo migration) d5fb705652bca5db75b24fb3e9421f3be09e9fa3' 2026-09-28 23:46:26,214 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:46:26,326 [ scc.git] DEBUG .bumpversion.cfg | 4 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG .github/workflows/omero_plugin.yml | 2 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG .github/workflows/pages.yml | 28 - 2026-09-28 23:46:26,326 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG .gitignore | 7 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG .gitmodules | 3 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG .omeroci/app-srv | 4 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG README.rst | 76 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG deploy_build.sh | 21 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG deploy_ghpages.sh | 1 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG figure | 1 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG omero_figure/scripts/__init__.py | 0 2026-09-28 23:46:26,326 [ scc.git] DEBUG omero_figure/scripts/omero/__init__.py | 0 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../scripts/omero/figure_scripts/Figure_To_Pdf.py | 3562 -------------------- 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../scripts/omero/figure_scripts/__init__.py | 0 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pbm | Bin 8441 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../scripts/omero/figure_scripts/pilfonts/B24.pil | Bin 5143 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSans.ttf | Bin 568896 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../omero/figure_scripts/pilfonts/FreeSansBold.ttf | Bin 359272 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../pilfonts/FreeSansBoldOblique.ttf | Bin 301188 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG .../figure_scripts/pilfonts/FreeSansOblique.ttf | Bin 441432 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG omero_figure/views.py | 52 +- 2026-09-28 23:46:26,326 [ scc.git] DEBUG package-lock.json | 1499 -------- 2026-09-28 23:46:26,326 [ scc.git] DEBUG package.json | 51 - 2026-09-28 23:46:26,326 [ scc.git] DEBUG setup.py | 8 + 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/css/figure.css | 1551 --------- 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/html/dialogs/scriptManagerDialog.html | 86 - 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/arrow-icon-16.png | Bin 2878 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/button-down-grey.png | Bin 3274 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/button-down.png | Bin 1879 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/button-flat.png | Bin 2827 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/button-up.png | Bin 2111 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/crop20.png | Bin 3022 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/cursor-icon-16.png | Bin 245 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/ellipse-icon-16.png | Bin 3020 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/gradient.png | Bin 3405 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/hue.png | Bin 2837 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/line-icon-16.png | Bin 2865 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/luts_10.png | Bin 18556 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/markdown_dark32x20.png | Bin 3116 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/markdown_light32x20.png | Bin 3089 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/point-icon-24.png | Bin 2477 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/polygon-icon-16.png | Bin 2880 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/polyline-icon-16.png | Bin 2874 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/projection20.png | Bin 3585 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/square-outline-icon-16.png | Bin 96 -> 0 bytes 2026-09-28 23:46:26,326 [ scc.git] DEBUG src/images/text-icon-24.png | Bin 2477 -> 0 bytes 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/index.html | 1986 ----------- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/main.js | 189 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/models/figure_model.js | 1398 -------- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/models/panel_model.js | 1577 --------- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/models/roi_model.js | 149 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/models/undo.js | 282 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/models/zarr_utils.js | 483 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shapeEditorTest.js | 454 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/ellipse.js | 604 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/line.js | 612 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/point.js | 527 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/polygon.js | 462 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/rect.js | 618 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/shape_manager.js | 992 ------ 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/shape_editor/text.js | 564 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/backbone.mousetrap.js | 69 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/channel_slider_view.js | 450 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/chgrp_modal_view.js | 143 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/colorbar_form_view.js | 124 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/colorpicker.js | 143 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/crop_modal_view.js | 660 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/figure_view.js | 1125 ------- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/files.js | 374 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/info_panel_view.js | 293 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/label_suggestions.js | 753 ----- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/labels_from_maps_modal.js | 197 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/legend_view.js | 174 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/lutpicker.js | 181 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/modal_views.js | 536 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/open_local_file_modal.js | 77 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/panel_view.js | 501 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/raphael-rect.js | 291 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/right_panel_view.js | 1572 --------- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/roi_loader_view.js | 250 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/roi_modal_view.js | 645 ---- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/scalebar_form_view.js | 230 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/svg_model_view.js | 441 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/util.csrf.js | 83 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/util.js | 397 --- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/js/views/zt_sliders_view.js | 332 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/scss/styles.scss | 2 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/shapeEditorTest.html | 198 -- 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/channel_slider.template.html | 90 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/checkbox_template.html | 4 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/colorbar.template.html | 42 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/colorbar_form.template.html | 137 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/figure_panel.template.html | 6 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/files/figure_file_item.template.html | 32 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/image_display_options.template.html | 34 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/info_panel.template.html | 54 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/labels/label.template.html | 8 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG .../labels/label_right_vertical.template.html | 8 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/labels/label_table.template.html | 11 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/labels/label_vertical.template.html | 8 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/labels_form.template.html | 13 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/labels_form_inner.template.html | 128 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG src/templates/lut_picker.template.html | 21 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG .../modal_dialogs/crop_modal_roi.template.html | 30 - 2026-09-28 23:46:26,327 [ scc.git] DEBUG .../modal_dialogs/paper_setup_modal.template.html | 108 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG .../modal_dialogs/preview_id_change.template.html | 65 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG .../modal_dialogs/roi_modal_roi.template.html | 56 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG .../modal_dialogs/roi_modal_shape.template.html | 42 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG .../modal_dialogs/roi_zt_buttons.template.html | 9 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/rois_form.template.html | 246 -- 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/scalebar_form.template.html | 154 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/scalebar_panel.template.html | 10 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/shapes/shape_item_template.html | 12 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/shapes/shape_sidebar.template.html | 56 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/shapes/shape_toolbar.template.html | 226 -- 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/viewport.template.html | 5 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/viewport_inner.template.html | 12 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/xywh_panel.template.html | 60 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/templates/zoom_crop.template.html | 28 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG src/test.html | 25 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG vite.config.js | 32 - 2026-09-28 23:46:26,328 [ scc.git] DEBUG 122 files changed, 115 insertions(+), 29753 deletions(-) 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 .github/workflows/pages.yml 2026-09-28 23:46:26,328 [ scc.git] DEBUG create mode 100644 .gitmodules 2026-09-28 23:46:26,328 [ scc.git] DEBUG create mode 160000 figure 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/__init__.py 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/__init__.py 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/__init__.py 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pbm 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/B24.pil 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSans.ttf 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBold.ttf 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansBoldOblique.ttf 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100755 omero_figure/scripts/omero/figure_scripts/pilfonts/FreeSansOblique.ttf 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 package-lock.json 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 package.json 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/css/figure.css 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/html/dialogs/scriptManagerDialog.html 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/arrow-icon-16.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/button-down-grey.png 2026-09-28 23:46:26,328 [ 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src/images/markdown_light32x20.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/point-icon-24.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/polygon-icon-16.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/polyline-icon-16.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/projection20.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/square-outline-icon-16.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/images/text-icon-24.png 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/index.html 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/main.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/models/figure_model.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/models/panel_model.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/models/roi_model.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/models/undo.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/models/zarr_utils.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/shapeEditorTest.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/ellipse.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/line.js 2026-09-28 23:46:26,328 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/point.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/polygon.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/rect.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/shape_manager.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/shape_editor/text.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/backbone.mousetrap.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/channel_slider_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/chgrp_modal_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/colorbar_form_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/colorpicker.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/crop_modal_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/figure_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/files.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/info_panel_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/label_suggestions.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/labels_from_maps_modal.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/legend_view.js 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2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/util.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/js/views/zt_sliders_view.js 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/scss/styles.scss 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/shapeEditorTest.html 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/templates/channel_slider.template.html 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/templates/checkbox_template.html 2026-09-28 23:46:26,329 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/colorbar_form.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/figure_panel.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/files/figure_file_item.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/image_display_options.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/info_panel.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_right_vertical.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_table.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels/label_vertical.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form.template.html 2026-09-28 23:46:26,364 [ scc.git] DEBUG delete mode 100644 src/templates/labels_form_inner.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/lut_picker.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/crop_modal_roi.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/paper_setup_modal.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/preview_id_change.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_roi.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_modal_shape.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/modal_dialogs/roi_zt_buttons.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/rois_form.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_form.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/scalebar_panel.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_item_template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_sidebar.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/shapes/shape_toolbar.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/viewport.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/viewport_inner.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/xywh_panel.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/templates/zoom_crop.template.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100644 src/test.html 2026-09-28 23:46:26,365 [ scc.git] DEBUG delete mode 100755 vite.config.js 2026-09-28 23:46:26,545 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:46:26,546 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:46:26,688 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:26,688 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:26,703 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:46:26,822 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:46:26,912 [ scc.git] DEBUG has no local changes 2026-09-28 23:46:26,912 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:46:27,096 [ scc.git] DEBUG [detached HEAD c2989af1] merge master -Dorg -Ssuccess-only 2026-09-28 23:46:27,100 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:46:27,100 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:46:27,439 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/pulls HTTP/1.1" 200 None 2026-09-28 23:46:27,955 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/31 HTTP/1.1" 200 None 2026-09-28 23:46:27,956 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:28,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:29,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:29,667 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:46:30,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:30,635 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:30,636 [ scc.repo] DEBUG - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:46:31,119 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18 HTTP/1.1" 200 None 2026-09-28 23:46:31,599 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/issues/18/comments HTTP/1.1" 200 None 2026-09-28 23:46:32,228 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:32,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:33,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/commits/45aed4d15501fa5a524a8b500af8d426f0f6b337?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:33,717 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-fpbioimage/statuses/45aed4d15501fa5a524a8b500af8d426f0f6b337?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:33,718 [ scc.repo] DEBUG - PR 18 jburel 'default size z value' 2026-09-28 23:46:33,718 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:46:33,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-28 23:46:33,719 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:33,719 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:33,740 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:46:33,759 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:46:33,759 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:46:33,782 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:46:33,851 [ scc.git] DEBUG Already up to date. 2026-09-28 23:46:33,851 [ scc.git] DEBUG Calling 'git fetch origin pull/18/head' 2026-09-28 23:46:34,409 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-09-28 23:46:34,409 [ scc.git] DEBUG * branch refs/pull/18/head -> FETCH_HEAD 2026-09-28 23:46:34,435 [ scc.git] DEBUG Calling 'git fetch origin pull/31/head' 2026-09-28 23:46:34,904 [ scc.git] DEBUG From https://github.com/ome/omero-fpbioimage 2026-09-28 23:46:34,904 [ scc.git] DEBUG * branch refs/pull/31/head -> FETCH_HEAD 2026-09-28 23:46:34,930 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:46:34,930 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:34,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:34,945 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-09-28 23:46:34,981 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:34,997 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 18 (default size z value) 45aed4d15501fa5a524a8b500af8d426f0f6b337' 2026-09-28 23:46:35,223 [ scc.git] DEBUG Auto-merging omero_fpbioimage/views.py 2026-09-28 23:46:35,301 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:46:35,374 [ scc.git] DEBUG omero_fpbioimage/views.py | 2 ++ 2026-09-28 23:46:35,374 [ scc.git] DEBUG 1 file changed, 2 insertions(+) 2026-09-28 23:46:35,547 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:46:35,547 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-09-28 23:46:35,581 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:35,595 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 31 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 4b00cd1d5e91886f12f55315cb65fd3ef74ebe3c' 2026-09-28 23:46:35,817 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:46:35,886 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:46:35,886 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:46:36,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:46:36,067 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:46:36,195 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:36,195 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:36,209 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:46:36,333 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:46:36,388 [ scc.git] DEBUG has no local changes 2026-09-28 23:46:36,388 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:46:36,542 [ scc.git] DEBUG [detached HEAD 71bd493] merge master -Dorg -Ssuccess-only 2026-09-28 23:46:36,543 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:46:36,543 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:46:36,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/pulls HTTP/1.1" 200 None 2026-09-28 23:46:37,343 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119 HTTP/1.1" 200 None 2026-09-28 23:46:37,830 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/119/comments HTTP/1.1" 200 None 2026-09-28 23:46:38,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/119/comments?page=2 HTTP/1.1" 200 None 2026-09-28 23:46:38,339 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:38,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:39,491 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:39,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/00257fc993a12b3f78a45db039e7bf2c8a406062?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:40,413 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/00257fc993a12b3f78a45db039e7bf2c8a406062?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:40,414 [ scc.repo] DEBUG - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-09-28 23:46:40,909 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118 HTTP/1.1" 200 None 2026-09-28 23:46:41,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/118/comments HTTP/1.1" 200 None 2026-09-28 23:46:41,917 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repositories/9042541/issues/118/comments?page=2 HTTP/1.1" 200 None 2026-09-28 23:46:41,918 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:42,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:43,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:43,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/2bf34ddacb511c52e473a104fe2a1c00204bae1d?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:44,058 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/2bf34ddacb511c52e473a104fe2a1c00204bae1d?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:44,059 [ scc.repo] DEBUG - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-09-28 23:46:44,563 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/117 HTTP/1.1" 200 None 2026-09-28 23:46:44,563 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:45,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:45,683 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:46,189 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/155d7ddab4f04c4a91bffc5736ba0741003c566c?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:46,641 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/155d7ddab4f04c4a91bffc5736ba0741003c566c?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:46,642 [ scc.repo] DEBUG - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-09-28 23:46:47,155 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/116 HTTP/1.1" 200 None 2026-09-28 23:46:47,156 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:47,770 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:48,274 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:48,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:49,232 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:49,232 [ scc.repo] DEBUG - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-09-28 23:46:49,751 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115 HTTP/1.1" 200 None 2026-09-28 23:46:50,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/115/comments HTTP/1.1" 200 None 2026-09-28 23:46:50,251 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:50,895 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:51,437 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:52,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/25020d66a7df4ec3cad5967706bb7d13b1493bb5?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:52,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/25020d66a7df4ec3cad5967706bb7d13b1493bb5?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:52,596 [ scc.repo] DEBUG - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-09-28 23:46:53,127 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/114 HTTP/1.1" 200 None 2026-09-28 23:46:53,128 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:53,742 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:54,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:54,781 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/cf75d259b2882000d6be73bc1c11c99c27aa439b?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:55,220 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/cf75d259b2882000d6be73bc1c11c99c27aa439b?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:55,220 [ scc.repo] DEBUG - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-09-28 23:46:55,789 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/issues/113 HTTP/1.1" 200 None 2026-09-28 23:46:55,790 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:46:56,403 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:56,968 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:46:57,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/commits/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?page=1 HTTP/1.1" 200 None 2026-09-28 23:46:57,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-gallery/statuses/6a657d7a4e0bbfaa3464e851023f29c63db15d4e?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:46:57,945 [ scc.repo] DEBUG - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-09-28 23:46:57,945 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:46:57,945 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-28 23:46:57,947 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:46:57,947 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:46:57,968 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:46:57,991 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:46:57,991 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:46:58,019 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:46:58,083 [ scc.git] DEBUG Already up to date. 2026-09-28 23:46:58,083 [ scc.git] DEBUG Calling 'git fetch origin pull/113/head' 2026-09-28 23:46:58,555 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:46:58,556 [ scc.git] DEBUG * branch refs/pull/113/head -> FETCH_HEAD 2026-09-28 23:46:58,584 [ scc.git] DEBUG Calling 'git fetch origin pull/114/head' 2026-09-28 23:46:59,031 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:46:59,031 [ scc.git] DEBUG * branch refs/pull/114/head -> FETCH_HEAD 2026-09-28 23:46:59,060 [ scc.git] DEBUG Calling 'git fetch origin pull/115/head' 2026-09-28 23:46:59,538 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:46:59,538 [ scc.git] DEBUG * branch refs/pull/115/head -> FETCH_HEAD 2026-09-28 23:46:59,562 [ scc.git] DEBUG Calling 'git fetch origin pull/116/head' 2026-09-28 23:47:00,035 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:47:00,035 [ scc.git] DEBUG * branch refs/pull/116/head -> FETCH_HEAD 2026-09-28 23:47:00,061 [ scc.git] DEBUG Calling 'git fetch origin pull/117/head' 2026-09-28 23:47:00,528 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:47:00,528 [ scc.git] DEBUG * branch refs/pull/117/head -> FETCH_HEAD 2026-09-28 23:47:00,558 [ scc.git] DEBUG Calling 'git fetch origin pull/118/head' 2026-09-28 23:47:01,050 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:47:01,050 [ scc.git] DEBUG * branch refs/pull/118/head -> FETCH_HEAD 2026-09-28 23:47:01,078 [ scc.git] DEBUG Calling 'git fetch origin pull/119/head' 2026-09-28 23:47:01,571 [ scc.git] DEBUG From https://github.com/ome/omero-gallery 2026-09-28 23:47:01,571 [ scc.git] DEBUG * branch refs/pull/119/head -> FETCH_HEAD 2026-09-28 23:47:01,598 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:47:01,598 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:47:01,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:01,615 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-09-28 23:47:01,642 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:01,658 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 113 (Bump elliptic from 6.5.4 to 6.6.1) 6a657d7a4e0bbfaa3464e851023f29c63db15d4e' 2026-09-28 23:47:01,891 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:47:01,989 [ scc.git] DEBUG package-lock.json | 12 ++++++------ 2026-09-28 23:47:01,989 [ scc.git] DEBUG 1 file changed, 6 insertions(+), 6 deletions(-) 2026-09-28 23:47:02,178 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:02,179 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-09-28 23:47:02,213 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:02,229 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) cf75d259b2882000d6be73bc1c11c99c27aa439b' 2026-09-28 23:47:02,419 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:02,490 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:47:02,578 [ scc.git] DEBUG package-lock.json | 625 +++--------------------------------------------------- 2026-09-28 23:47:02,578 [ scc.git] DEBUG 1 file changed, 29 insertions(+), 596 deletions(-) 2026-09-28 23:47:02,762 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:02,763 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-28 23:47:02,795 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:02,813 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 115 (Bump micromatch, webpack-cli and webpack) 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-28 23:47:03,029 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:03,029 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-28 23:47:03,058 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:47:03,060 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:47:03,096 [ scc.git] DEBUG Calling 'git reset --hard 297ed00c26dd28acb5cb907fa58cbfa31242e6cf' 2026-09-28 23:47:03,289 [ scc.git] DEBUG HEAD is now at 297ed00 merge master -Dorg -Ssuccess-only: PR 114 (Bump tar and fsevents) 2026-09-28 23:47:03,486 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:03,487 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 25020d66a7df4ec3cad5967706bb7d13b1493bb5' 2026-09-28 23:47:03,515 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-28 23:47:03,540 [ scc.git] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json --conflicts 2026-09-28 23:47:03,577 [ scc.config] DEBUG Found github.token 2026-09-28 23:47:03,578 [ scc.git] DEBUG Not adding comment to issue #115, already --conflicts. 2026-09-28 23:47:03,578 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-09-28 23:47:03,609 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:03,625 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 116 (Bump browserify-sign from 4.0.4 to 4.2.3) 42a5fb83ce9b8598e3339099a6b4606ef3fd3f1d' 2026-09-28 23:47:03,862 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:03,947 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:47:04,032 [ scc.git] DEBUG package-lock.json | 119 +++++++++++++++++++++++++++++++++++++++++++++++++----- 2026-09-28 23:47:04,032 [ scc.git] DEBUG 1 file changed, 108 insertions(+), 11 deletions(-) 2026-09-28 23:47:04,212 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:04,213 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-09-28 23:47:04,249 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:04,266 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 155d7ddab4f04c4a91bffc5736ba0741003c566c' 2026-09-28 23:47:04,444 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:04,569 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:47:04,635 [ scc.git] DEBUG package-lock.json | 6 +++--- 2026-09-28 23:47:04,635 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 3 deletions(-) 2026-09-28 23:47:04,836 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:04,837 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-28 23:47:04,870 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:04,884 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 118 (Bump braces, webpack-cli and webpack) 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-28 23:47:05,073 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:05,073 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-28 23:47:05,102 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:47:05,103 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:47:05,141 [ scc.git] DEBUG Calling 'git reset --hard 5ae7e1dab8867aef4c70f0417d67bd6dafe2147d' 2026-09-28 23:47:05,312 [ scc.git] DEBUG HEAD is now at 5ae7e1d merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-09-28 23:47:05,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:05,505 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 2bf34ddacb511c52e473a104fe2a1c00204bae1d' 2026-09-28 23:47:05,530 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-28 23:47:05,551 [ scc.git] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json --conflicts 2026-09-28 23:47:05,565 [ scc.config] DEBUG Found github.token 2026-09-28 23:47:05,565 [ scc.git] DEBUG Not adding comment to issue #118, already --conflicts. 2026-09-28 23:47:05,565 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-28 23:47:05,597 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:05,613 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 119 (Bump serialize-javascript and webpack) 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-28 23:47:05,817 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:47:05,817 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-28 23:47:05,849 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:47:05,851 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:47:05,888 [ scc.git] DEBUG Calling 'git reset --hard 5ae7e1dab8867aef4c70f0417d67bd6dafe2147d' 2026-09-28 23:47:06,019 [ scc.git] DEBUG HEAD is now at 5ae7e1d merge master -Dorg -Ssuccess-only: PR 117 (Bump cross-spawn from 6.0.5 to 6.0.6) 2026-09-28 23:47:06,208 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:47:06,208 [ scc.git] DEBUG Calling 'git merge-base 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd 00257fc993a12b3f78a45db039e7bf2c8a406062' 2026-09-28 23:47:06,230 [ scc.git] DEBUG Calling 'git diff --name-only 2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd..2a621da2c7ae6ec30fae288d6cfe64d90c40f8fd' 2026-09-28 23:47:06,247 [ scc.git] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - package-lock.json - PR #114 dependabot[bot] 'Bump tar and fsevents' - package-lock.json - PR #115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - package-lock.json - PR #116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - package-lock.json - PR #117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' - package-lock.json - PR #118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - package-lock.json --conflicts 2026-09-28 23:47:06,258 [ scc.config] DEBUG Found github.token 2026-09-28 23:47:06,258 [ scc.git] DEBUG Not adding comment to issue #119, already --conflicts. 2026-09-28 23:47:06,258 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:47:06,375 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:47:06,375 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:06,391 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:47:06,518 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:47:06,601 [ scc.git] DEBUG has no local changes 2026-09-28 23:47:06,601 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:47:06,805 [ scc.git] DEBUG [detached HEAD c78c634] merge master -Dorg -Ssuccess-only 2026-09-28 23:47:06,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:47:06,807 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:47:07,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls HTTP/1.1" 200 None 2026-09-28 23:47:07,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/567 HTTP/1.1" 200 None 2026-09-28 23:47:08,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:08,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:09,579 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:47:10,051 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/38a260841feb643eaf6b5a098e1b248a6f0af57a?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:10,503 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/38a260841feb643eaf6b5a098e1b248a6f0af57a?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:10,504 [ scc.repo] DEBUG - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-09-28 23:47:11,000 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/566 HTTP/1.1" 200 None 2026-09-28 23:47:11,001 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:47:11,602 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:12,171 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:12,816 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:47:13,296 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:13,740 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/a0f64fab8b6ff36d8cc38e97fee618e2cd043626?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:13,741 [ scc.repo] DEBUG - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-09-28 23:47:14,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/565 HTTP/1.1" 200 None 2026-09-28 23:47:14,251 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:47:14,872 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:15,436 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:15,997 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:47:16,484 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:16,945 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/5bf4a3df9d457e59731fdbcc113c1da254f5d4f0?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:16,946 [ scc.repo] DEBUG - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-09-28 23:47:17,449 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/564 HTTP/1.1" 200 None 2026-09-28 23:47:17,451 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:47:18,074 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:18,629 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:19,200 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:47:19,709 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/bce482eff7b13b8edfef15f2a68f00129c6a707f?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:20,151 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/bce482eff7b13b8edfef15f2a68f00129c6a707f?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:20,152 [ scc.repo] DEBUG - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-09-28 23:47:20,638 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532 HTTP/1.1" 200 None 2026-09-28 23:47:21,166 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/532/comments HTTP/1.1" 200 None 2026-09-28 23:47:21,737 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:22,295 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:22,812 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:47:23,293 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:23,743 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/fb88f3a09446141b1d1bc276c87ea6a832ff1b3a?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:23,744 [ scc.repo] DEBUG - PR 532 will-moore 'Zarr layers' 2026-09-28 23:47:24,312 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471 HTTP/1.1" 200 None 2026-09-28 23:47:24,798 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/issues/471/comments HTTP/1.1" 200 None 2026-09-28 23:47:25,365 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:25,986 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:47:26,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/commits/448d042a58da05a522531356cc58c1e35b5744d9?page=1 HTTP/1.1" 200 None 2026-09-28 23:47:26,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/statuses/448d042a58da05a522531356cc58c1e35b5744d9?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:47:26,928 [ scc.repo] DEBUG - PR 471 will-moore 'Z projection disabled tooltip' 2026-09-28 23:47:26,929 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:47:26,929 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-28 23:47:26,929 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:47:26,930 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:47:26,961 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:47:26,986 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:47:26,986 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:47:27,730 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:47:28,649 [ scc.git] DEBUG Updating 7a798cee..6c554250 2026-09-28 23:47:29,266 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/562 HTTP/1.1" 200 None 2026-09-28 23:47:30,053 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/563 HTTP/1.1" 200 None 2026-09-28 23:47:30,800 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/559 HTTP/1.1" 200 None 2026-09-28 23:47:31,560 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/558 HTTP/1.1" 200 None 2026-09-28 23:47:32,289 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/557 HTTP/1.1" 200 None 2026-09-28 23:47:33,064 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/541 HTTP/1.1" 200 None 2026-09-28 23:47:33,834 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/556 HTTP/1.1" 200 None 2026-09-28 23:47:34,618 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/554 HTTP/1.1" 200 None 2026-09-28 23:47:35,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/553 HTTP/1.1" 200 None 2026-09-28 23:47:36,083 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/552 HTTP/1.1" 200 None 2026-09-28 23:47:36,985 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/551 HTTP/1.1" 200 None 2026-09-28 23:47:37,790 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/550 HTTP/1.1" 200 None 2026-09-28 23:47:38,569 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/549 HTTP/1.1" 200 None 2026-09-28 23:47:39,516 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/548 HTTP/1.1" 200 None 2026-09-28 23:47:40,231 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/547 HTTP/1.1" 200 None 2026-09-28 23:47:40,967 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/540 HTTP/1.1" 200 None 2026-09-28 23:47:41,695 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/539 HTTP/1.1" 200 None 2026-09-28 23:47:42,513 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/537 HTTP/1.1" 200 None 2026-09-28 23:47:43,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/535 HTTP/1.1" 200 None 2026-09-28 23:47:44,176 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/527 HTTP/1.1" 200 None 2026-09-28 23:47:44,944 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/534 HTTP/1.1" 200 None 2026-09-28 23:47:45,674 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/533 HTTP/1.1" 200 None 2026-09-28 23:47:46,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/530 HTTP/1.1" 200 None 2026-09-28 23:47:47,174 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/528 HTTP/1.1" 200 None 2026-09-28 23:47:47,960 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/529 HTTP/1.1" 200 None 2026-09-28 23:47:48,839 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/526 HTTP/1.1" 200 None 2026-09-28 23:47:49,593 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/525 HTTP/1.1" 200 None 2026-09-28 23:47:50,305 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/524 HTTP/1.1" 200 None 2026-09-28 23:47:51,068 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/523 HTTP/1.1" 200 None 2026-09-28 23:47:51,784 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/522 HTTP/1.1" 200 None 2026-09-28 23:47:52,510 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/521 HTTP/1.1" 200 None 2026-09-28 23:47:53,258 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/520 HTTP/1.1" 200 None 2026-09-28 23:47:54,070 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/519 HTTP/1.1" 200 None 2026-09-28 23:47:54,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/518 HTTP/1.1" 200 None 2026-09-28 23:47:55,660 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/514 HTTP/1.1" 200 None 2026-09-28 23:47:56,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/513 HTTP/1.1" 200 None 2026-09-28 23:47:57,393 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/512 HTTP/1.1" 200 None 2026-09-28 23:47:58,414 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/465 HTTP/1.1" 200 None 2026-09-28 23:47:59,269 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/517 HTTP/1.1" 200 None 2026-09-28 23:48:00,126 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/516 HTTP/1.1" 200 None 2026-09-28 23:48:00,928 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/510 HTTP/1.1" 200 None 2026-09-28 23:48:01,692 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-iviewer/pulls/506 HTTP/1.1" 200 None 2026-09-28 23:48:01,693 [ scc.git] DEBUG Calling 'git fetch origin pull/471/head' 2026-09-28 23:48:02,490 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:02,490 [ scc.git] DEBUG * branch refs/pull/471/head -> FETCH_HEAD 2026-09-28 23:48:02,525 [ scc.git] DEBUG Calling 'git fetch origin pull/532/head' 2026-09-28 23:48:03,151 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:03,151 [ scc.git] DEBUG * branch refs/pull/532/head -> FETCH_HEAD 2026-09-28 23:48:03,188 [ scc.git] DEBUG Calling 'git fetch origin pull/564/head' 2026-09-28 23:48:03,750 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:03,750 [ scc.git] DEBUG * branch refs/pull/564/head -> FETCH_HEAD 2026-09-28 23:48:03,787 [ scc.git] DEBUG Calling 'git fetch origin pull/565/head' 2026-09-28 23:48:04,404 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:04,404 [ scc.git] DEBUG * branch refs/pull/565/head -> FETCH_HEAD 2026-09-28 23:48:04,439 [ scc.git] DEBUG Calling 'git fetch origin pull/566/head' 2026-09-28 23:48:05,046 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:05,046 [ scc.git] DEBUG * branch refs/pull/566/head -> FETCH_HEAD 2026-09-28 23:48:05,081 [ scc.git] DEBUG Calling 'git fetch origin pull/567/head' 2026-09-28 23:48:05,766 [ scc.git] DEBUG From https://github.com/ome/omero-iviewer 2026-09-28 23:48:05,766 [ scc.git] DEBUG * branch refs/pull/567/head -> FETCH_HEAD 2026-09-28 23:48:05,800 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:48:05,800 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:05,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:05,816 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...448d042a58da05a522531356cc58c1e35b5744d9' 2026-09-28 23:48:05,911 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:05,931 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 448d042a58da05a522531356cc58c1e35b5744d9' 2026-09-28 23:48:06,330 [ scc.git] DEBUG Auto-merging src/controls/dimension-slider.js 2026-09-28 23:48:06,416 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:06,508 [ scc.git] DEBUG src/controls/dimension-slider.html | 2 +- 2026-09-28 23:48:06,508 [ scc.git] DEBUG src/controls/dimension-slider.js | 20 ++++++++++++++++++++ 2026-09-28 23:48:06,508 [ scc.git] DEBUG 2 files changed, 21 insertions(+), 1 deletion(-) 2026-09-28 23:48:06,707 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:06,707 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-28 23:48:06,800 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:06,816 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 532 (Zarr layers) fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging css/app.css 2026-09-28 23:48:07,646 [ scc.git] DEBUG CONFLICT (content): Merge conflict in css/app.css 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:48:07,646 [ scc.git] DEBUG CONFLICT (content): Merge conflict in package-lock.json 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging package.json 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging src/app/context.js 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging src/model/image_config.js 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging src/viewers/viewer/Viewer.js 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging src/viewers/viewer/source/Image.js 2026-09-28 23:48:07,646 [ scc.git] DEBUG Auto-merging webpack.dev.config.js 2026-09-28 23:48:07,678 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:48:07,682 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:48:07,793 [ scc.git] DEBUG Calling 'git reset --hard 8239b3387b18b3dc0fa492089b7abc9b94483e1f' 2026-09-28 23:48:08,266 [ scc.git] DEBUG HEAD is now at 8239b338 merge master -Dorg -Ssuccess-only: PR 471 (Z projection disabled tooltip) 2026-09-28 23:48:08,462 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:08,463 [ scc.git] DEBUG Calling 'git merge-base 6c554250ea1528ff339ac06c3fe1e0621fe48576 fb88f3a09446141b1d1bc276c87ea6a832ff1b3a' 2026-09-28 23:48:08,540 [ scc.git] DEBUG Calling 'git diff --name-only 0b7eaf71f7e3f5c7289fab4bf857094bdadce1e4..6c554250ea1528ff339ac06c3fe1e0621fe48576' 2026-09-28 23:48:08,600 [ scc.git] INFO - PR 532 will-moore 'Zarr layers' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - Upstream changes - package-lock.json - css/app.css --conflicts 2026-09-28 23:48:08,613 [ scc.config] DEBUG Found github.token 2026-09-28 23:48:08,613 [ scc.git] DEBUG Not adding comment to issue #532, already --conflicts. 2026-09-28 23:48:08,614 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...bce482eff7b13b8edfef15f2a68f00129c6a707f' 2026-09-28 23:48:08,711 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:08,731 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 564 (Bump fast-uri from 3.1.5 to 3.1.7) bce482eff7b13b8edfef15f2a68f00129c6a707f' 2026-09-28 23:48:09,140 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:09,237 [ scc.git] DEBUG package-lock.json | 15 ++++++++------- 2026-09-28 23:48:09,237 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 7 deletions(-) 2026-09-28 23:48:09,428 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:09,429 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5bf4a3df9d457e59731fdbcc113c1da254f5d4f0' 2026-09-28 23:48:09,537 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:09,554 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 565 (Bump qs and body-parser) 5bf4a3df9d457e59731fdbcc113c1da254f5d4f0' 2026-09-28 23:48:09,883 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:48:09,969 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:10,062 [ scc.git] DEBUG package-lock.json | 96 +++++++++++++++++++++++++++++++++---------------------- 2026-09-28 23:48:10,062 [ scc.git] DEBUG 1 file changed, 58 insertions(+), 38 deletions(-) 2026-09-28 23:48:10,242 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:10,242 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...a0f64fab8b6ff36d8cc38e97fee618e2cd043626' 2026-09-28 23:48:10,363 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:10,381 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 566 (Bump js-yaml from 4.1.0 to 4.3.2) a0f64fab8b6ff36d8cc38e97fee618e2cd043626' 2026-09-28 23:48:10,710 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:48:10,802 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:10,894 [ scc.git] DEBUG package-lock.json | 70 ++++++++++++++++++++++++++++++++----------------------- 2026-09-28 23:48:10,894 [ scc.git] DEBUG 1 file changed, 41 insertions(+), 29 deletions(-) 2026-09-28 23:48:11,075 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:11,076 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38a260841feb643eaf6b5a098e1b248a6f0af57a' 2026-09-28 23:48:11,178 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:11,192 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 567 (Basic fix of prev/next shapes when shapes sorted) 38a260841feb643eaf6b5a098e1b248a6f0af57a' 2026-09-28 23:48:11,537 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:11,638 [ scc.git] DEBUG src/model/regions_info.js | 3 ++ 2026-09-28 23:48:11,638 [ scc.git] DEBUG src/regions/regions-edit.js | 103 +++++++++++++++++++++++++++++++++++++++++--- 2026-09-28 23:48:11,638 [ scc.git] DEBUG src/regions/regions-list.js | 2 + 2026-09-28 23:48:11,638 [ scc.git] DEBUG 3 files changed, 103 insertions(+), 5 deletions(-) 2026-09-28 23:48:11,827 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:11,828 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:48:11,992 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:11,992 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:12,009 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:48:12,152 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:48:12,287 [ scc.git] DEBUG has no local changes 2026-09-28 23:48:12,287 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..6c554250 Previously merged: - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:48:12,491 [ scc.git] DEBUG [detached HEAD 27a9d99e] merge master -Dorg -Ssuccess-only 2026-09-28 23:48:12,495 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:48:12,495 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:48:12,891 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/pulls HTTP/1.1" 200 None 2026-09-28 23:48:13,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98 HTTP/1.1" 200 None 2026-09-28 23:48:13,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/98/comments HTTP/1.1" 200 None 2026-09-28 23:48:13,941 [ scc.repo] DEBUG # ... Include label: include 2026-09-28 23:48:14,493 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:15,038 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:15,572 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:16,025 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1fa070ad0afa0f3944fa2513d38db6da1f5bc783?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:16,026 [ scc.repo] DEBUG - PR 98 JoshuaFortriede 'use namespace with keys' 2026-09-28 23:48:16,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97 HTTP/1.1" 200 None 2026-09-28 23:48:17,039 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/97/comments HTTP/1.1" 200 None 2026-09-28 23:48:17,040 [ scc.repo] DEBUG # ... Include label: include 2026-09-28 23:48:17,596 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:18,145 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:18,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/3854f1cfa0cbe79675dad16ad34fce109524eb28?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:19,085 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/3854f1cfa0cbe79675dad16ad34fce109524eb28?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:19,086 [ scc.repo] DEBUG - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-09-28 23:48:19,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95 HTTP/1.1" 200 None 2026-09-28 23:48:20,080 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/95/comments HTTP/1.1" 200 None 2026-09-28 23:48:20,080 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:48:20,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:21,235 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:21,840 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:48:22,327 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/38cc352a088eaedfaa2dd8874c4f200f98f41a99?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:22,775 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/38cc352a088eaedfaa2dd8874c4f200f98f41a99?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:22,776 [ scc.repo] DEBUG - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:48:23,253 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/94 HTTP/1.1" 200 None 2026-09-28 23:48:23,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:24,357 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:24,844 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/commits/1896cfebc876f939f8d83bd1cf56b8584ff2921d?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:25,337 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/statuses/1896cfebc876f939f8d83bd1cf56b8584ff2921d?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:25,337 [ scc.repo] DEBUG - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:48:25,822 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74 HTTP/1.1" 200 None 2026-09-28 23:48:26,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-mapr/issues/74/comments HTTP/1.1" 200 None 2026-09-28 23:48:26,341 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:48:26,341 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-28 23:48:26,342 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:26,342 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:26,364 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:48:26,387 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:48:26,388 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:48:26,416 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:48:26,480 [ scc.git] DEBUG Already up to date. 2026-09-28 23:48:26,481 [ scc.git] DEBUG Calling 'git fetch origin pull/94/head' 2026-09-28 23:48:27,007 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-28 23:48:27,007 [ scc.git] DEBUG * branch refs/pull/94/head -> FETCH_HEAD 2026-09-28 23:48:27,046 [ scc.git] DEBUG Calling 'git fetch origin pull/95/head' 2026-09-28 23:48:27,510 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-28 23:48:27,510 [ scc.git] DEBUG * branch refs/pull/95/head -> FETCH_HEAD 2026-09-28 23:48:27,537 [ scc.git] DEBUG Calling 'git fetch origin pull/97/head' 2026-09-28 23:48:28,159 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-28 23:48:28,159 [ scc.git] DEBUG * branch refs/pull/97/head -> FETCH_HEAD 2026-09-28 23:48:28,188 [ scc.git] DEBUG Calling 'git fetch origin pull/98/head' 2026-09-28 23:48:28,709 [ scc.git] DEBUG From https://github.com/ome/omero-mapr 2026-09-28 23:48:28,710 [ scc.git] DEBUG * branch refs/pull/98/head -> FETCH_HEAD 2026-09-28 23:48:28,739 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:48:28,739 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:28,739 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:28,757 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-09-28 23:48:28,799 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:28,818 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 1896cfebc876f939f8d83bd1cf56b8584ff2921d' 2026-09-28 23:48:29,066 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:29,146 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:48:29,146 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:48:29,339 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:29,340 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-28 23:48:29,377 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:29,394 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 95 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-28 23:48:29,587 [ scc.git] DEBUG Auto-merging .github/workflows/publish_pypi.yml 2026-09-28 23:48:29,587 [ scc.git] DEBUG CONFLICT (content): Merge conflict in .github/workflows/publish_pypi.yml 2026-09-28 23:48:29,618 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:48:29,620 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:48:29,651 [ scc.git] DEBUG Calling 'git reset --hard 0c2f152d09899101026c77c6844e523477d88b98' 2026-09-28 23:48:29,821 [ scc.git] DEBUG HEAD is now at 0c2f152 merge master -Dorg -Ssuccess-only: PR 94 (Use the release/v1 branch for the PyPA action publishing to PyPI) 2026-09-28 23:48:30,027 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:30,028 [ scc.git] DEBUG Calling 'git merge-base 0a557da89145e65db313c1721a26cb43e490dd8a 38cc352a088eaedfaa2dd8874c4f200f98f41a99' 2026-09-28 23:48:30,059 [ scc.git] DEBUG Calling 'git diff --name-only 0a557da89145e65db313c1721a26cb43e490dd8a..0a557da89145e65db313c1721a26cb43e490dd8a' 2026-09-28 23:48:30,082 [ scc.git] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - .github/workflows/publish_pypi.yml --conflicts 2026-09-28 23:48:30,096 [ scc.config] DEBUG Found github.token 2026-09-28 23:48:30,096 [ scc.git] DEBUG Not adding comment to issue #95, already --conflicts. 2026-09-28 23:48:30,096 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-09-28 23:48:30,141 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:30,160 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 97 (BUG Fix: use HTML value to replace HTML) 3854f1cfa0cbe79675dad16ad34fce109524eb28' 2026-09-28 23:48:30,408 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:30,496 [ scc.git] DEBUG .../templates/webclient/data/includes/right_plugin.general.js.html | 4 +++- 2026-09-28 23:48:30,496 [ scc.git] DEBUG 1 file changed, 3 insertions(+), 1 deletion(-) 2026-09-28 23:48:30,680 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:30,681 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-09-28 23:48:30,734 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:30,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 98 (use namespace with keys) 1fa070ad0afa0f3944fa2513d38db6da1f5bc783' 2026-09-28 23:48:30,972 [ scc.git] DEBUG Auto-merging omero_mapr/templates/webclient/data/includes/right_plugin.general.js.html 2026-09-28 23:48:31,057 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:31,157 [ scc.git] DEBUG .../webclient/data/includes/right_plugin.general.js.html | 11 ++++++++--- 2026-09-28 23:48:31,157 [ scc.git] DEBUG 1 file changed, 8 insertions(+), 3 deletions(-) 2026-09-28 23:48:31,335 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:31,336 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:48:31,485 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:31,485 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:31,502 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:48:31,636 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:48:31,714 [ scc.git] DEBUG has no local changes 2026-09-28 23:48:31,714 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:48:31,878 [ scc.git] DEBUG [detached HEAD f437cee] merge master -Dorg -Ssuccess-only 2026-09-28 23:48:31,880 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:48:31,880 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:48:32,219 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls HTTP/1.1" 200 None 2026-09-28 23:48:32,727 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92 HTTP/1.1" 200 None 2026-09-28 23:48:33,233 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/92/comments HTTP/1.1" 200 None 2026-09-28 23:48:33,846 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:34,426 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:34,931 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/64d33da6022f537d572d4f69a5cec86377b6e78f?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:35,494 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/64d33da6022f537d572d4f69a5cec86377b6e78f?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:35,494 [ scc.repo] DEBUG - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-09-28 23:48:36,037 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64 HTTP/1.1" 200 None 2026-09-28 23:48:36,551 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/64/comments HTTP/1.1" 200 None 2026-09-28 23:48:37,156 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:37,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:38,250 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/78e55539b68e351ed5ef202854718b49a37729a7?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:38,708 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/78e55539b68e351ed5ef202854718b49a37729a7?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:38,709 [ scc.repo] DEBUG - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-09-28 23:48:39,195 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55 HTTP/1.1" 200 None 2026-09-28 23:48:39,689 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/issues/55/comments HTTP/1.1" 200 None 2026-09-28 23:48:40,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:40,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:41,334 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/commits/14f0448a90ccd781126a5c9dc267f4d0a6939102?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:41,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/statuses/14f0448a90ccd781126a5c9dc267f4d0a6939102?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:41,779 [ scc.repo] DEBUG - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-09-28 23:48:41,779 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:48:41,779 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-28 23:48:41,780 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:41,780 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:41,805 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:48:41,831 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:48:41,832 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:48:41,962 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:48:42,302 [ scc.git] DEBUG Updating 3cd120c..6a653e4 2026-09-28 23:48:42,859 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/95 HTTP/1.1" 200 None 2026-09-28 23:48:43,649 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/94 HTTP/1.1" 200 None 2026-09-28 23:48:44,473 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-metadata/pulls/90 HTTP/1.1" 200 None 2026-09-28 23:48:44,474 [ scc.git] DEBUG Calling 'git fetch origin pull/55/head' 2026-09-28 23:48:45,166 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-28 23:48:45,166 [ scc.git] DEBUG * branch refs/pull/55/head -> FETCH_HEAD 2026-09-28 23:48:45,196 [ scc.git] DEBUG Calling 'git fetch origin pull/64/head' 2026-09-28 23:48:46,025 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-28 23:48:46,026 [ scc.git] DEBUG * branch refs/pull/64/head -> FETCH_HEAD 2026-09-28 23:48:46,059 [ scc.git] DEBUG Calling 'git fetch origin pull/92/head' 2026-09-28 23:48:46,613 [ scc.git] DEBUG From https://github.com/ome/omero-metadata 2026-09-28 23:48:46,613 [ scc.git] DEBUG * branch refs/pull/92/head -> FETCH_HEAD 2026-09-28 23:48:46,654 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:48:46,654 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:46,654 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:46,670 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-28 23:48:46,735 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:46,751 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 55 (Prevent users from creating columns with python keyword names) 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-28 23:48:47,013 [ scc.git] DEBUG Auto-merging src/omero_metadata/cli.py 2026-09-28 23:48:47,013 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/cli.py 2026-09-28 23:48:47,013 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-09-28 23:48:47,013 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-09-28 23:48:47,039 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:48:47,040 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:48:47,069 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-28 23:48:47,230 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-09-28 23:48:47,419 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:47,420 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 14f0448a90ccd781126a5c9dc267f4d0a6939102' 2026-09-28 23:48:47,474 [ scc.git] DEBUG Calling 'git diff --name-only 27cc7289e9da842ed29a8192419a6b9ef851256d..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-28 23:48:47,509 [ scc.git] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - Upstream changes - src/omero_metadata/populate.py - src/omero_metadata/cli.py --conflicts 2026-09-28 23:48:47,523 [ scc.config] DEBUG Found github.token 2026-09-28 23:48:47,524 [ scc.git] DEBUG Not adding comment to issue #55, already --conflicts. 2026-09-28 23:48:47,524 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-28 23:48:47,598 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:47,615 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 64 (Support images_by_name for Screen and Plate) 78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-28 23:48:47,885 [ scc.git] DEBUG Auto-merging src/omero_metadata/populate.py 2026-09-28 23:48:47,885 [ scc.git] DEBUG CONFLICT (content): Merge conflict in src/omero_metadata/populate.py 2026-09-28 23:48:47,885 [ scc.git] DEBUG Auto-merging test/integration/metadata/test_populate.py 2026-09-28 23:48:47,925 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:48:47,927 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:48:47,961 [ scc.git] DEBUG Calling 'git reset --hard 6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-28 23:48:48,115 [ scc.git] DEBUG HEAD is now at 6a653e4 Fix workflow permission indentation 2026-09-28 23:48:48,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:48,322 [ scc.git] DEBUG Calling 'git merge-base 6a653e49e3589ccb463166506896639f6f0a5a2b 78e55539b68e351ed5ef202854718b49a37729a7' 2026-09-28 23:48:48,387 [ scc.git] DEBUG Calling 'git diff --name-only 298f02623cd90268162161a988575db0b8c3d1ab..6a653e49e3589ccb463166506896639f6f0a5a2b' 2026-09-28 23:48:48,423 [ scc.git] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - PR #55 kkoz 'Prevent users from creating columns with python keyword names' - src/omero_metadata/populate.py - Upstream changes - src/omero_metadata/populate.py --conflicts 2026-09-28 23:48:48,440 [ scc.config] DEBUG Found github.token 2026-09-28 23:48:48,440 [ scc.git] DEBUG Not adding comment to issue #64, already --conflicts. 2026-09-28 23:48:48,440 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-09-28 23:48:48,500 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:48,517 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 92 (add resolve_rois to projectwrapper) 64d33da6022f537d572d4f69a5cec86377b6e78f' 2026-09-28 23:48:48,796 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:48:48,869 [ scc.git] DEBUG src/omero_metadata/populate.py | 55 +++++++++++++++++++++++++++++++++++++++++- 2026-09-28 23:48:48,869 [ scc.git] DEBUG 1 file changed, 54 insertions(+), 1 deletion(-) 2026-09-28 23:48:49,061 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:48:49,062 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:48:49,208 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:48:49,209 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:48:49,226 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:48:49,350 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:48:49,419 [ scc.git] DEBUG has no local changes 2026-09-28 23:48:49,419 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:48:49,585 [ scc.git] DEBUG [detached HEAD ddcf6c5] merge master -Dorg -Ssuccess-only 2026-09-28 23:48:49,588 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:48:49,588 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:48:50,012 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/pulls HTTP/1.1" 200 None 2026-09-28 23:48:50,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/142 HTTP/1.1" 200 None 2026-09-28 23:48:51,114 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:51,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:52,210 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/16e9698187d538ee54a603e8f6c8c95a6ae448e0?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:52,702 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/16e9698187d538ee54a603e8f6c8c95a6ae448e0?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:52,703 [ scc.repo] DEBUG - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:48:53,202 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/141 HTTP/1.1" 200 None 2026-09-28 23:48:53,203 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:48:53,794 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:54,325 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:54,832 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/de7db17cd62b498179713df276cff151a1f36d80?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:55,292 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/de7db17cd62b498179713df276cff151a1f36d80?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:55,293 [ scc.repo] DEBUG - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-09-28 23:48:55,818 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/140 HTTP/1.1" 200 None 2026-09-28 23:48:55,819 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:48:56,409 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:56,993 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:48:57,527 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/commits/6301bc61b0a877104173846d526382bf15cc70a0?page=1 HTTP/1.1" 200 None 2026-09-28 23:48:58,006 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/statuses/6301bc61b0a877104173846d526382bf15cc70a0?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:48:58,007 [ scc.repo] DEBUG - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-09-28 23:48:58,496 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/139 HTTP/1.1" 200 None 2026-09-28 23:48:58,989 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94 HTTP/1.1" 200 None 2026-09-28 23:48:59,481 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/94/comments HTTP/1.1" 200 None 2026-09-28 23:48:59,971 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86 HTTP/1.1" 200 None 2026-09-28 23:49:00,472 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/86/comments HTTP/1.1" 200 None 2026-09-28 23:49:00,991 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39 HTTP/1.1" 200 None 2026-09-28 23:49:01,476 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-parade/issues/39/comments HTTP/1.1" 200 None 2026-09-28 23:49:01,478 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:01,479 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-28 23:49:01,479 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:01,480 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:01,502 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:01,526 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:01,526 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:01,552 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:01,623 [ scc.git] DEBUG Already up to date. 2026-09-28 23:49:01,623 [ scc.git] DEBUG Calling 'git fetch origin pull/140/head' 2026-09-28 23:49:02,135 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-28 23:49:02,136 [ scc.git] DEBUG * branch refs/pull/140/head -> FETCH_HEAD 2026-09-28 23:49:02,166 [ scc.git] DEBUG Calling 'git fetch origin pull/141/head' 2026-09-28 23:49:02,619 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-28 23:49:02,619 [ scc.git] DEBUG * branch refs/pull/141/head -> FETCH_HEAD 2026-09-28 23:49:02,661 [ scc.git] DEBUG Calling 'git fetch origin pull/142/head' 2026-09-28 23:49:03,168 [ scc.git] DEBUG From https://github.com/ome/omero-parade 2026-09-28 23:49:03,169 [ scc.git] DEBUG * branch refs/pull/142/head -> FETCH_HEAD 2026-09-28 23:49:03,198 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:03,198 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:03,198 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:03,216 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...6301bc61b0a877104173846d526382bf15cc70a0' 2026-09-28 23:49:03,243 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:03,260 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 140 (Bump vite from 4.2.3 to 4.5.9) 6301bc61b0a877104173846d526382bf15cc70a0' 2026-09-28 23:49:03,526 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:03,606 [ scc.git] DEBUG package-lock.json | 289 ++++++++++++++++++++++++++---------------------------- 2026-09-28 23:49:03,606 [ scc.git] DEBUG package.json | 2 +- 2026-09-28 23:49:03,606 [ scc.git] DEBUG 2 files changed, 138 insertions(+), 153 deletions(-) 2026-09-28 23:49:03,787 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:03,788 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...de7db17cd62b498179713df276cff151a1f36d80' 2026-09-28 23:49:03,826 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:03,848 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 141 (Bump axios from 1.6.0 to 1.8.2) de7db17cd62b498179713df276cff151a1f36d80' 2026-09-28 23:49:04,068 [ scc.git] DEBUG Auto-merging package-lock.json 2026-09-28 23:49:04,068 [ scc.git] DEBUG Auto-merging package.json 2026-09-28 23:49:04,144 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:04,226 [ scc.git] DEBUG package-lock.json | 18 ++++++++++-------- 2026-09-28 23:49:04,226 [ scc.git] DEBUG package.json | 2 +- 2026-09-28 23:49:04,226 [ scc.git] DEBUG 2 files changed, 11 insertions(+), 9 deletions(-) 2026-09-28 23:49:04,410 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:04,411 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-09-28 23:49:04,458 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:04,475 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 142 (Use the release/v1 branch for the PyPA action publishing to PyPI) 16e9698187d538ee54a603e8f6c8c95a6ae448e0' 2026-09-28 23:49:04,734 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:04,815 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:49:04,815 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:49:05,002 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:05,003 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:05,168 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:05,168 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:05,186 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:05,321 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:05,391 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:05,391 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:05,534 [ scc.git] DEBUG [detached HEAD 3651065] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:05,537 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:05,537 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:05,817 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/pulls HTTP/1.1" 200 None 2026-09-28 23:49:06,319 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/issues/16 HTTP/1.1" 200 None 2026-09-28 23:49:06,320 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:49:06,924 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:07,544 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:08,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:49:08,582 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/commits/5381b9f25e1666d81d236039a1317276291e9b2e?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:09,044 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-prometheus-tools/statuses/5381b9f25e1666d81d236039a1317276291e9b2e?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:09,045 [ scc.repo] DEBUG - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:49:09,045 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:09,045 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-28 23:49:09,046 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:09,046 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:09,070 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:09,091 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:09,091 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:09,115 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:09,171 [ scc.git] DEBUG Already up to date. 2026-09-28 23:49:09,171 [ scc.git] DEBUG Calling 'git fetch origin pull/16/head' 2026-09-28 23:49:09,699 [ scc.git] DEBUG From https://github.com/ome/omero-prometheus-tools 2026-09-28 23:49:09,699 [ scc.git] DEBUG * branch refs/pull/16/head -> FETCH_HEAD 2026-09-28 23:49:09,730 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:09,731 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:09,731 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:09,747 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...5381b9f25e1666d81d236039a1317276291e9b2e' 2026-09-28 23:49:09,776 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:09,792 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 16 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 5381b9f25e1666d81d236039a1317276291e9b2e' 2026-09-28 23:49:10,005 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:10,087 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:49:10,087 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:49:10,506 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:10,507 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:10,628 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:10,628 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:10,643 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:10,766 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:10,811 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:10,812 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:10,964 [ scc.git] DEBUG [detached HEAD 005668b] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:10,966 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:10,966 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:11,257 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls HTTP/1.1" 200 None 2026-09-28 23:49:11,756 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/issues/32 HTTP/1.1" 200 None 2026-09-28 23:49:11,757 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:11,757 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-28 23:49:11,758 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:11,758 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:11,785 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:11,811 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:11,811 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:11,878 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:12,166 [ scc.git] DEBUG Updating bdfeb5e..fc9ff96 2026-09-28 23:49:12,791 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/36 HTTP/1.1" 200 None 2026-09-28 23:49:13,617 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-rois/pulls/35 HTTP/1.1" 200 None 2026-09-28 23:49:13,618 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:13,618 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:13,618 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:13,637 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:13,791 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:13,791 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:13,805 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:13,951 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:14,024 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:14,024 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:14,170 [ scc.git] DEBUG [detached HEAD a92b41b] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:14,173 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:14,173 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:14,508 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/pulls HTTP/1.1" 200 None 2026-09-28 23:49:15,022 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/22 HTTP/1.1" 200 None 2026-09-28 23:49:15,023 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:49:15,688 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:16,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:16,793 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:49:17,285 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/8b27e47a330555e99e9594f0c4b546946f4f98aa?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:17,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/8b27e47a330555e99e9594f0c4b546946f4f98aa?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:17,730 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:49:18,218 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14 HTTP/1.1" 200 None 2026-09-28 23:49:18,710 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/issues/14/comments HTTP/1.1" 200 None 2026-09-28 23:49:19,294 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:19,782 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:20,268 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/commits/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:20,718 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-signup/statuses/b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:20,718 [ scc.repo] DEBUG - PR 14 manics 'Add pre-commit (black, flake8)' 2026-09-28 23:49:20,718 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:20,718 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-28 23:49:20,720 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:20,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:20,750 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:20,783 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:20,783 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:20,805 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:20,872 [ scc.git] DEBUG Already up to date. 2026-09-28 23:49:20,872 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-09-28 23:49:21,530 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-09-28 23:49:21,530 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-09-28 23:49:21,559 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-09-28 23:49:21,997 [ scc.git] DEBUG From https://github.com/ome/omero-signup 2026-09-28 23:49:21,997 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-09-28 23:49:22,028 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:22,028 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:22,028 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:22,046 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-28 23:49:22,082 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:22,097 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Add pre-commit (black, flake8)) b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-28 23:49:22,426 [ scc.git] DEBUG Auto-merging omero_signup/signup_settings.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/signup_settings.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG Auto-merging omero_signup/urls.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/urls.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG Auto-merging omero_signup/views.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_signup/views.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG Auto-merging setup.py 2026-09-28 23:49:22,426 [ scc.git] DEBUG CONFLICT (content): Merge conflict in setup.py 2026-09-28 23:49:22,450 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:49:22,451 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:49:22,489 [ scc.git] DEBUG Calling 'git reset --hard be76813540a02082196cac2ffee151e3f68cb71e' 2026-09-28 23:49:22,655 [ scc.git] DEBUG HEAD is now at be76813 Merge pull request #21 from jburel/build 2026-09-28 23:49:22,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:22,829 [ scc.git] DEBUG Calling 'git merge-base be76813540a02082196cac2ffee151e3f68cb71e b6aaf8b1b1af424ed458b3fe51d67ed0838d9e2d' 2026-09-28 23:49:22,860 [ scc.git] DEBUG Calling 'git diff --name-only f7ab15963cb5284a255b8574c8675437644fbdf1..be76813540a02082196cac2ffee151e3f68cb71e' 2026-09-28 23:49:22,887 [ scc.git] INFO - PR 14 manics 'Add pre-commit (black, flake8)' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - Upstream changes - omero_signup/views.py - setup.py - omero_signup/signup_settings.py - omero_signup/urls.py --conflicts 2026-09-28 23:49:22,901 [ scc.config] DEBUG Found github.token 2026-09-28 23:49:22,901 [ scc.git] DEBUG Not adding comment to issue #14, already --conflicts. 2026-09-28 23:49:22,901 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-09-28 23:49:22,926 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:22,943 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8b27e47a330555e99e9594f0c4b546946f4f98aa' 2026-09-28 23:49:23,167 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:23,266 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:49:23,267 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:49:23,441 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:23,442 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:23,574 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:23,575 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:23,590 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:23,727 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:23,778 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:23,778 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:23,938 [ scc.git] DEBUG [detached HEAD 42b957f] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:23,941 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:23,941 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:24,259 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls HTTP/1.1" 200 None 2026-09-28 23:49:24,753 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/75 HTTP/1.1" 200 None 2026-09-28 23:49:25,260 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74 HTTP/1.1" 200 None 2026-09-28 23:49:25,733 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/issues/74/comments HTTP/1.1" 200 None 2026-09-28 23:49:26,314 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:26,847 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:27,328 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/commits/c18c080227e97899382d3464baa7c7885a621623?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:27,786 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/statuses/c18c080227e97899382d3464baa7c7885a621623?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:27,786 [ scc.repo] DEBUG - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-09-28 23:49:27,787 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:27,787 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-28 23:49:27,788 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:27,788 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:27,816 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:27,839 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:27,839 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:27,896 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:28,097 [ scc.git] DEBUG Updating cda3ec6..c8a0015 2026-09-28 23:49:28,647 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/84 HTTP/1.1" 200 None 2026-09-28 23:49:29,499 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/82 HTTP/1.1" 200 None 2026-09-28 23:49:30,355 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-test-infra/pulls/81 HTTP/1.1" 200 None 2026-09-28 23:49:30,357 [ scc.git] DEBUG Calling 'git fetch origin pull/74/head' 2026-09-28 23:49:30,933 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-test-infra 2026-09-28 23:49:30,933 [ scc.git] DEBUG * branch refs/pull/74/head -> FETCH_HEAD 2026-09-28 23:49:30,963 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:30,963 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:30,963 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:30,979 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c18c080227e97899382d3464baa7c7885a621623' 2026-09-28 23:49:31,018 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:31,035 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 74 (Add 'ms' target for ./docker) c18c080227e97899382d3464baa7c7885a621623' 2026-09-28 23:49:31,243 [ scc.git] DEBUG Auto-merging .github/workflows/main.yml 2026-09-28 23:49:31,325 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:31,409 [ scc.git] DEBUG .github/workflows/main.yml | 8 ++++++++ 2026-09-28 23:49:31,409 [ scc.git] DEBUG docker | 22 ++++++++++++++++++++++ 2026-09-28 23:49:31,409 [ scc.git] DEBUG ms/compose.yml | 11 +++++++++++ 2026-09-28 23:49:31,409 [ scc.git] DEBUG ms/example/Dockerfile | 13 +++++++++++++ 2026-09-28 23:49:31,409 [ scc.git] DEBUG ms/test | 2 ++ 2026-09-28 23:49:31,409 [ scc.git] DEBUG 5 files changed, 56 insertions(+) 2026-09-28 23:49:31,409 [ scc.git] DEBUG create mode 100644 ms/compose.yml 2026-09-28 23:49:31,409 [ scc.git] DEBUG create mode 100644 ms/example/Dockerfile 2026-09-28 23:49:31,409 [ scc.git] DEBUG create mode 100755 ms/test 2026-09-28 23:49:31,586 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:31,587 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:31,713 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:31,713 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:31,728 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:31,840 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:31,910 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:31,910 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:32,087 [ scc.git] DEBUG [detached HEAD 56c2ae5] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:32,090 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:32,090 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:32,402 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/pulls HTTP/1.1" 200 None 2026-09-28 23:49:32,923 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/issues/14 HTTP/1.1" 200 None 2026-09-28 23:49:32,924 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:49:33,539 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:34,318 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:34,901 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:49:35,411 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/commits/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:36,066 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-upload/statuses/1a4dbe9a31854f4f65c509ea929debf3319ba1ea?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:36,066 [ scc.repo] DEBUG - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:49:36,066 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:36,066 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-28 23:49:36,068 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:36,068 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:36,092 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:36,114 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:36,114 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:36,142 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:36,214 [ scc.git] DEBUG Already up to date. 2026-09-28 23:49:36,214 [ scc.git] DEBUG Calling 'git fetch origin pull/14/head' 2026-09-28 23:49:36,694 [ scc.git] DEBUG From https://github.com/ome/omero-upload 2026-09-28 23:49:36,694 [ scc.git] DEBUG * branch refs/pull/14/head -> FETCH_HEAD 2026-09-28 23:49:36,725 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:36,726 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:36,726 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:36,743 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-09-28 23:49:36,770 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:36,790 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 14 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 1a4dbe9a31854f4f65c509ea929debf3319ba1ea' 2026-09-28 23:49:37,016 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:37,103 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:49:37,103 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:49:37,284 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:37,285 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:37,452 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:37,453 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:37,469 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:37,613 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:37,676 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:37,676 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:37,869 [ scc.git] DEBUG [detached HEAD bdec8b1] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:37,872 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:37,872 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:38,168 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls HTTP/1.1" 200 None 2026-09-28 23:49:38,675 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/issues/22 HTTP/1.1" 200 None 2026-09-28 23:49:38,676 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:49:39,342 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:39,992 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:40,577 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:49:41,067 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/commits/2ee819462af52bf2878fadf06d6ebdbafb8f1902?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:41,533 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/statuses/2ee819462af52bf2878fadf06d6ebdbafb8f1902?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:41,534 [ scc.repo] DEBUG - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:49:41,534 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:41,534 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-28 23:49:41,536 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:41,536 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:41,558 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:49:41,579 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:41,580 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:49:41,637 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:49:41,829 [ scc.git] DEBUG Updating deab817..160d894 2026-09-28 23:49:42,349 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-virtual-microscope/pulls/20 HTTP/1.1" 200 None 2026-09-28 23:49:42,350 [ scc.git] DEBUG Calling 'git fetch origin pull/22/head' 2026-09-28 23:49:42,869 [ scc.git] DEBUG From https://github.com/ome/omero-virtual-microscope 2026-09-28 23:49:42,869 [ scc.git] DEBUG * branch refs/pull/22/head -> FETCH_HEAD 2026-09-28 23:49:42,906 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:42,906 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:42,906 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:42,923 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-09-28 23:49:42,949 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:42,965 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 22 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 2ee819462af52bf2878fadf06d6ebdbafb8f1902' 2026-09-28 23:49:43,170 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:43,249 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:49:43,249 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:49:43,443 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:43,444 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:43,591 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:43,591 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:43,606 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:43,748 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:43,809 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:43,809 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:44,036 [ scc.git] DEBUG [detached HEAD 9bc5d0c] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:44,039 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:44,039 [ scc.git] INFO Overriding base-branch from master to main 2026-09-28 23:49:44,039 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:44,304 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls HTTP/1.1" 200 None 2026-09-28 23:49:44,811 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21 HTTP/1.1" 200 None 2026-09-28 23:49:45,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/21/comments HTTP/1.1" 200 None 2026-09-28 23:49:45,867 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:46,612 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:47,194 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:49:47,669 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/d07067753650282c9e8cdbbeae37897b7ed0d4cc?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:48,142 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/d07067753650282c9e8cdbbeae37897b7ed0d4cc?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:48,143 [ scc.repo] DEBUG - PR 21 will-moore 'Web zarr import' 2026-09-28 23:49:48,622 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/16 HTTP/1.1" 200 None 2026-09-28 23:49:49,120 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10 HTTP/1.1" 200 None 2026-09-28 23:49:49,608 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/issues/10/comments HTTP/1.1" 200 None 2026-09-28 23:49:50,149 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:50,627 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:51,121 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/commits/85cf4c893f393da6763bf4cee2a308832a41a9e8?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:51,581 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/statuses/85cf4c893f393da6763bf4cee2a308832a41a9e8?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:49:51,582 [ scc.repo] DEBUG - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-09-28 23:49:51,582 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:49:51,582 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-28 23:49:51,583 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:51,583 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:51,625 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/main' 2026-09-28 23:49:51,648 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:49:51,648 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/main' 2026-09-28 23:49:51,672 [ scc.git] DEBUG Calling 'git merge --ff-only origin/main' 2026-09-28 23:49:51,837 [ scc.git] DEBUG Updating 8f3c313..4e1e685 2026-09-28 23:49:52,412 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/23 HTTP/1.1" 200 None 2026-09-28 23:49:53,214 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-web-zarr/pulls/20 HTTP/1.1" 200 None 2026-09-28 23:49:53,216 [ scc.git] DEBUG Calling 'git fetch origin pull/10/head' 2026-09-28 23:49:53,853 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-09-28 23:49:53,853 [ scc.git] DEBUG * branch refs/pull/10/head -> FETCH_HEAD 2026-09-28 23:49:53,879 [ scc.git] DEBUG Calling 'git fetch origin pull/21/head' 2026-09-28 23:49:54,650 [ scc.git] DEBUG From https://github.com/ome/omero-web-zarr 2026-09-28 23:49:54,650 [ scc.git] DEBUG * branch refs/pull/21/head -> FETCH_HEAD 2026-09-28 23:49:54,676 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:49:54,677 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:54,677 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:54,690 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-28 23:49:54,720 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:54,736 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 10 (Add Openwith -> itk-vtk viewer) 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-28 23:49:54,945 [ scc.git] DEBUG Auto-merging README.rst 2026-09-28 23:49:54,945 [ scc.git] DEBUG Auto-merging omero_web_zarr/urls.py 2026-09-28 23:49:54,945 [ scc.git] DEBUG CONFLICT (content): Merge conflict in omero_web_zarr/urls.py 2026-09-28 23:49:54,945 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-09-28 23:49:54,977 [ scc.git] DEBUG Automatic merge failed; fix conflicts and then commit the result. 2026-09-28 23:49:54,979 [ scc.git] DEBUG Calling 'git diff --name-only --diff-filter=U' 2026-09-28 23:49:55,014 [ scc.git] DEBUG Calling 'git reset --hard 4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-09-28 23:49:55,157 [ scc.git] DEBUG HEAD is now at 4e1e685 Merge pull request #23 from lubianat/patch-1 2026-09-28 23:49:55,346 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:55,347 [ scc.git] DEBUG Calling 'git merge-base 4e1e685dff22136abfd2626f6fd6eaf985aba368 85cf4c893f393da6763bf4cee2a308832a41a9e8' 2026-09-28 23:49:55,372 [ scc.git] DEBUG Calling 'git diff --name-only daa26b83ec1c94ace0c1eedcfb7d38c9185503d7..4e1e685dff22136abfd2626f6fd6eaf985aba368' 2026-09-28 23:49:55,394 [ scc.git] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Conflicting PR. Removed from build [OMERO-plugins-push#92](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/). See the [console output](https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/consoleText) for more details. Possible conflicts: - Upstream changes - omero_web_zarr/urls.py --conflicts 2026-09-28 23:49:55,407 [ scc.config] DEBUG Found github.token 2026-09-28 23:49:55,407 [ scc.git] DEBUG Not adding comment to issue #10, already --conflicts. 2026-09-28 23:49:55,408 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-09-28 23:49:55,453 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:55,468 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 21 (Web zarr import) d07067753650282c9e8cdbbeae37897b7ed0d4cc' 2026-09-28 23:49:55,692 [ scc.git] DEBUG Auto-merging README.rst 2026-09-28 23:49:55,692 [ scc.git] DEBUG Auto-merging omero_web_zarr/views.py 2026-09-28 23:49:55,762 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:49:55,835 [ scc.git] DEBUG README.rst | 3 + 2026-09-28 23:49:55,835 [ scc.git] DEBUG .../templates/omero_web_zarr/zarr_import.html | 358 +++++++++++++++++++++ 2026-09-28 23:49:55,835 [ scc.git] DEBUG omero_web_zarr/urls.py | 2 + 2026-09-28 23:49:55,836 [ scc.git] DEBUG omero_web_zarr/views.py | 43 ++- 2026-09-28 23:49:55,836 [ scc.git] DEBUG setup.py | 5 +- 2026-09-28 23:49:55,836 [ scc.git] DEBUG 5 files changed, 409 insertions(+), 2 deletions(-) 2026-09-28 23:49:55,836 [ scc.git] DEBUG create mode 100644 omero_web_zarr/templates/omero_web_zarr/zarr_import.html 2026-09-28 23:49:56,016 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:49:56,017 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:49:56,151 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:49:56,151 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:49:56,165 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:49:56,289 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:49:56,356 [ scc.git] DEBUG has no local changes 2026-09-28 23:49:56,356 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:49:56,498 [ scc.git] DEBUG [detached HEAD e69a68e] merge master -Dorg -Ssuccess-only 2026-09-28 23:49:56,500 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:49:56,500 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:49:56,766 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/pulls HTTP/1.1" 200 None 2026-09-28 23:49:57,316 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/issues/25 HTTP/1.1" 200 None 2026-09-28 23:49:57,318 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:49:58,571 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-09-28 23:49:59,184 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:49:59,715 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:50:00,238 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/commits/c73bedb717b9ecce0af666245d3486aa5a2dafe9?page=1 HTTP/1.1" 200 None 2026-09-28 23:50:00,686 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-weberror/statuses/c73bedb717b9ecce0af666245d3486aa5a2dafe9?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:50:00,687 [ scc.repo] DEBUG - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:00,688 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:50:00,688 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-28 23:50:00,689 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:00,689 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:00,742 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:50:00,767 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:50:00,767 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:50:00,796 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:50:00,866 [ scc.git] DEBUG Already up to date. 2026-09-28 23:50:00,866 [ scc.git] DEBUG Calling 'git fetch origin pull/25/head' 2026-09-28 23:50:01,394 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-weberror 2026-09-28 23:50:01,394 [ scc.git] DEBUG * branch refs/pull/25/head -> FETCH_HEAD 2026-09-28 23:50:01,426 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:50:01,426 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:01,426 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:01,441 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-09-28 23:50:01,463 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:01,479 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 25 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) c73bedb717b9ecce0af666245d3486aa5a2dafe9' 2026-09-28 23:50:01,685 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:50:01,764 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:50:01,764 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:50:01,965 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:01,966 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:50:02,092 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:02,092 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:02,109 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:50:02,246 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:50:02,310 [ scc.git] DEBUG has no local changes 2026-09-28 23:50:02,310 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:50:02,502 [ scc.git] DEBUG [detached HEAD 23533f1] merge master -Dorg -Ssuccess-only 2026-09-28 23:50:02,505 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:02,505 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:50:02,778 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/pulls HTTP/1.1" 200 None 2026-09-28 23:50:03,286 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/issues/37 HTTP/1.1" 200 None 2026-09-28 23:50:03,287 [ scc.repo] DEBUG # ... Include label: dependencies 2026-09-28 23:50:03,933 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-09-28 23:50:04,501 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:50:05,054 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:50:05,549 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/commits/8cf5f7e65ae8e945b134e41e77bc13a785aff478?page=1 HTTP/1.1" 200 None 2026-09-28 23:50:05,999 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-webtest/statuses/8cf5f7e65ae8e945b134e41e77bc13a785aff478?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:50:05,999 [ scc.repo] DEBUG - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:05,999 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:50:05,999 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-28 23:50:06,001 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:06,001 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:06,026 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:50:06,049 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:50:06,049 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:50:06,073 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:50:06,128 [ scc.git] DEBUG Already up to date. 2026-09-28 23:50:06,128 [ scc.git] DEBUG Calling 'git fetch origin pull/37/head' 2026-09-28 23:50:06,638 [ scc.git] DEBUG From https://github.com/openmicroscopy/omero-webtest 2026-09-28 23:50:06,638 [ scc.git] DEBUG * branch refs/pull/37/head -> FETCH_HEAD 2026-09-28 23:50:06,669 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:50:06,669 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:06,669 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:06,686 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-09-28 23:50:06,709 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:06,723 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 37 (Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows) 8cf5f7e65ae8e945b134e41e77bc13a785aff478' 2026-09-28 23:50:06,950 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:50:07,037 [ scc.git] DEBUG .github/workflows/publish_pypi.yml | 2 +- 2026-09-28 23:50:07,037 [ scc.git] DEBUG 1 file changed, 1 insertion(+), 1 deletion(-) 2026-09-28 23:50:07,279 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:07,279 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:50:07,443 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:07,443 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:07,460 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:50:07,597 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:50:07,671 [ scc.git] DEBUG has no local changes 2026-09-28 23:50:07,671 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:50:07,855 [ scc.git] DEBUG [detached HEAD e8ce927] merge master -Dorg -Ssuccess-only 2026-09-28 23:50:07,858 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:07,858 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:50:08,122 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/rOMERO-gateway/pulls HTTP/1.1" 200 2 2026-09-28 23:50:08,123 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:50:08,123 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-28 23:50:08,124 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:08,124 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:08,162 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/master' 2026-09-28 23:50:08,180 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:50:08,180 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/master' 2026-09-28 23:50:08,201 [ scc.git] DEBUG Calling 'git merge --ff-only origin/master' 2026-09-28 23:50:08,257 [ scc.git] DEBUG Already up to date. 2026-09-28 23:50:08,257 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:50:08,258 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:08,258 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:08,276 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:50:08,411 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:08,411 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:08,426 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:50:08,554 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:50:08,663 [ scc.git] DEBUG has no local changes 2026-09-28 23:50:08,664 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/rOMERO-gateway Already up to date. Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:50:08,805 [ scc.git] DEBUG [detached HEAD 36bf7a5] merge master -Dorg -Ssuccess-only 2026-09-28 23:50:08,807 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:08,807 [ scc.git] INFO Overriding base-branch from master to develop 2026-09-28 23:50:08,807 [ scc.repo] DEBUG ## PRs found: 2026-09-28 23:50:09,088 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls HTTP/1.1" 200 None 2026-09-28 23:50:09,595 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/issues/232 HTTP/1.1" 200 None 2026-09-28 23:50:10,192 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-09-28 23:50:10,806 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368&per_page=1 HTTP/1.1" 200 None 2026-09-28 23:50:11,384 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f/check-suites?app_id=15368 HTTP/1.1" 200 None 2026-09-28 23:50:11,874 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/commits/e190baa635f40826befc84321719243092ee849f?page=1 HTTP/1.1" 200 None 2026-09-28 23:50:12,370 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/statuses/e190baa635f40826befc84321719243092ee849f?per_page=1 HTTP/1.1" 200 2 2026-09-28 23:50:12,371 [ scc.repo] DEBUG - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-09-28 23:50:12,371 [ scc.repo] DEBUG ## Branches found: 2026-09-28 23:50:12,371 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-28 23:50:12,372 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:12,372 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:12,394 [ scc.git] DEBUG Calling 'git show-ref --verify --quiet refs/remotes/origin/develop' 2026-09-28 23:50:12,414 [ scc.git] DEBUG ## Merging base to ensure closed PRs are included. 2026-09-28 23:50:12,414 [ scc.git] DEBUG Calling 'git log --oneline --first-parent HEAD..origin/develop' 2026-09-28 23:50:12,495 [ scc.git] DEBUG Calling 'git merge --ff-only origin/develop' 2026-09-28 23:50:12,816 [ scc.git] DEBUG Updating 4b4c755..5b4d768 2026-09-28 23:50:13,381 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/231 HTTP/1.1" 200 None 2026-09-28 23:50:14,297 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/229 HTTP/1.1" 200 None 2026-09-28 23:50:15,036 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/223 HTTP/1.1" 200 None 2026-09-28 23:50:16,580 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/230 HTTP/1.1" 200 None 2026-09-28 23:50:17,287 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/228 HTTP/1.1" 200 None 2026-09-28 23:50:18,060 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/227 HTTP/1.1" 200 None 2026-09-28 23:50:18,882 [urllib3.conn] DEBUG https://api.github.com:443 "GET /repos/ome/omero-scripts/pulls/225 HTTP/1.1" 200 None 2026-09-28 23:50:18,884 [ scc.git] DEBUG Calling 'git fetch origin pull/232/head' 2026-09-28 23:50:19,481 [ scc.git] DEBUG From https://github.com/ome/scripts 2026-09-28 23:50:19,481 [ scc.git] DEBUG * branch refs/pull/232/head -> FETCH_HEAD 2026-09-28 23:50:19,517 [ scc.git] DEBUG ## Unique users: [] 2026-09-28 23:50:19,518 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:19,518 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:19,537 [ scc.git] DEBUG Calling 'git diff --name-only HEAD...e190baa635f40826befc84321719243092ee849f' 2026-09-28 23:50:19,578 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:19,596 [ scc.git] DEBUG Calling 'git merge --no-ff -m merge master -Dorg -Ssuccess-only: PR 232 (Add Auto header detection to `Populate_Metadata.py`) e190baa635f40826befc84321719243092ee849f' 2026-09-28 23:50:19,858 [ scc.git] DEBUG Merge made by the 'ort' strategy. 2026-09-28 23:50:19,944 [ scc.git] DEBUG omero/import_scripts/Populate_Metadata.py | 26 ++++++++++++++++++++++++-- 2026-09-28 23:50:19,944 [ scc.git] DEBUG 1 file changed, 24 insertions(+), 2 deletions(-) 2026-09-28 23:50:20,136 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:20,136 [ scc.git] DEBUG Calling 'git submodule update' 2026-09-28 23:50:20,282 [ scc.git] DEBUG Get sha1 of %s 2026-09-28 23:50:20,282 [ scc.git] DEBUG Calling 'git rev-parse HEAD' 2026-09-28 23:50:20,298 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:50:20,440 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:50:20,515 [ scc.git] DEBUG has no local changes 2026-09-28 23:50:20,515 [ scc.git] DEBUG Calling 'git commit --allow-empty -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:50:20,669 [ scc.git] DEBUG [detached HEAD 0a01434] merge master -Dorg -Ssuccess-only 2026-09-28 23:50:20,671 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:20,671 [ scc.git] DEBUG Calling 'git submodule --quiet foreach echo $path' 2026-09-28 23:50:20,981 [ scc.config] DEBUG Found submodule.figure.url 2026-09-28 23:50:21,157 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:21,201 [ scc.config] DEBUG Found submodule.minimal-omero-client.url 2026-09-28 23:50:21,585 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:21,621 [ scc.config] DEBUG Found submodule.minimal-omero-client.branch 2026-09-28 23:50:21,630 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.url 2026-09-28 23:50:22,007 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:22,054 [ scc.config] DEBUG Found submodule.omero-cli-duplicate.branch 2026-09-28 23:50:22,064 [ scc.config] DEBUG Found submodule.omero-cli-render.url 2026-09-28 23:50:22,461 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:22,499 [ scc.config] DEBUG Found submodule.omero-cli-render.branch 2026-09-28 23:50:22,510 [ scc.config] DEBUG Found submodule.omero-cli-zarr.url 2026-09-28 23:50:22,890 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:22,930 [ scc.config] DEBUG Found submodule.omero-figure.url 2026-09-28 23:50:23,321 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:23,355 [ scc.config] DEBUG Found submodule.omero-figure.branch 2026-09-28 23:50:23,364 [ scc.config] DEBUG Found submodule.omero-fpbioimage.url 2026-09-28 23:50:23,940 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:23,979 [ scc.config] DEBUG Found submodule.omero-fpbioimage.branch 2026-09-28 23:50:23,988 [ scc.config] DEBUG Found submodule.omero-gallery.url 2026-09-28 23:50:24,375 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:24,419 [ scc.config] DEBUG Found submodule.omero-gallery.branch 2026-09-28 23:50:24,431 [ scc.config] DEBUG Found submodule.omero-iviewer.url 2026-09-28 23:50:24,814 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:24,852 [ scc.config] DEBUG Found submodule.omero-iviewer.branch 2026-09-28 23:50:24,862 [ scc.config] DEBUG Found submodule.omero-mapr.url 2026-09-28 23:50:25,251 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:25,289 [ scc.config] DEBUG Found submodule.omero-mapr.branch 2026-09-28 23:50:25,300 [ scc.config] DEBUG Found submodule.omero-metadata.url 2026-09-28 23:50:25,690 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:25,724 [ scc.config] DEBUG Found submodule.omero-metadata.branch 2026-09-28 23:50:25,735 [ scc.config] DEBUG Found submodule.omero-parade.url 2026-09-28 23:50:26,116 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:26,151 [ scc.config] DEBUG Found submodule.omero-parade.branch 2026-09-28 23:50:26,160 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.url 2026-09-28 23:50:26,554 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:26,593 [ scc.config] DEBUG Found submodule.omero-prometheus-tools.branch 2026-09-28 23:50:26,602 [ scc.config] DEBUG Found submodule.omero-rois.url 2026-09-28 23:50:26,980 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:27,029 [ scc.config] DEBUG Found submodule.omero-signup.url 2026-09-28 23:50:27,405 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:27,445 [ scc.config] DEBUG Found submodule.omero-test-infra.url 2026-09-28 23:50:27,828 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:27,867 [ scc.config] DEBUG Found submodule.omero-test-infra.branch 2026-09-28 23:50:27,877 [ scc.config] DEBUG Found submodule.omero-upload.url 2026-09-28 23:50:28,300 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:28,341 [ scc.config] DEBUG Found submodule.omero-virtual-microscope.url 2026-09-28 23:50:28,729 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:28,775 [ scc.config] DEBUG Found submodule.omero-web-zarr.url 2026-09-28 23:50:29,162 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:29,198 [ scc.config] DEBUG Found submodule.omero-web-zarr.branch 2026-09-28 23:50:29,208 [ scc.config] DEBUG Found submodule.omero-weberror.url 2026-09-28 23:50:29,605 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:29,646 [ scc.config] DEBUG Found submodule.omero-weberror.branch 2026-09-28 23:50:29,658 [ scc.config] DEBUG Found submodule.omero-webtest.url 2026-09-28 23:50:30,042 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:30,081 [ scc.config] DEBUG Found submodule.omero-webtest.branch 2026-09-28 23:50:30,092 [ scc.config] DEBUG Found submodule.rOMERO-gateway.url 2026-09-28 23:50:30,505 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:30,547 [ scc.config] DEBUG Found submodule.rOMERO-gateway.branch 2026-09-28 23:50:30,558 [ scc.config] DEBUG Found submodule.scripts.url 2026-09-28 23:50:30,975 [urllib3.conn] DEBUG https://api.github.com:443 "GET /user HTTP/1.1" 200 None 2026-09-28 23:50:31,014 [ scc.config] DEBUG Found submodule.scripts.branch 2026-09-28 23:50:31,014 [ scc.git] DEBUG Calling 'git status --porcelain' 2026-09-28 23:50:33,522 [ scc.git] DEBUG has local changes 2026-09-28 23:50:33,522 [ scc.git] DEBUG Calling 'git commit -a -n -m merge master -Dorg -Ssuccess-only Repository: ome/omero-plugins Already up to date. Merged PRs: - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' Repository: ome/figure Excluded PRs: - PR 12 will-moore 'Browser based export' (stage: draft) - PR 9 will-moore 'Save omezarr collection' (stage: draft) Updating 3935875..833a7e1 Previously merged: - PR 14 will-moore 'App served by omero env' - PR 17 Rdornier 'Do not crop rotated panel at export' - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' Merged PRs: - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' - PR 19 Rdornier 'Fix rectangle crop' - PR 20 will-moore 'Hide export dropdown unless omero' Repository: ome/minimal-omero-client Already up to date. Repository: ome/omero-cli-duplicate Excluded PRs: - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) Already up to date. Merged PRs: - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-cli-render Excluded PRs: - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) Updating ce6e13c..68b7303 Previously merged: - PR 74 jburel 'Replace manual changelog by automated GH release step' - PR 75 jburel 'Sort the new channels to ensure settings are set' - PR 71 dominikl 'Escape slash character in image names' - PR 69 dominikl 'Fix help text for impo/export commands' Merged PRs: - PR 59 will-moore 'Apply settings to Plate' Repository: ome/omero-cli-zarr Excluded PRs: - PR 166 will-moore 'Downsample scale option' (stage: draft) - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) Updating 11d3587..d5f88d8 Previously merged: - PR 193 dominikl 'Only parse import uris if stated' - PR 182 will-moore 'Revert "Remove support for Plate import"' - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' - PR 197 pwalczysko 'Fix pragma' - PR 196 will-moore 'Storage options only if needed' - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' - PR 192 jburel 'Set Omero pixel size' - PR 186 jburel 'Create release from tag' - PR 187 dominikl 'Fix target-by-name option' - PR 180 will-moore 'Import command' - PR 179 will-moore 'Changelog 0.6.0' - PR 177 jburel 'Replace fromstring by frombuffer' - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' - PR 147 will-moore 'Name option' - PR 173 will-moore 'Add test_export_plate_polygons()' - PR 171 will-moore 'Initial addition of integration tests' - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Conflicting PRs (not included): - PR 174 will-moore 'Skip wells' - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' Repository: ome/omero-figure Updating 9cc36cde..3195c3df Previously merged: - PR 704 jburel 'Revert commit 49ae9c9' - PR 703 will-moore 'Readme remove rc' - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' - PR 692 will-moore 'colorbar lut background fix' - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' - PR 691 dependabot[bot] 'Bump esbuild and vite' - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' - PR 685 will-moore 'Fix static files links for release build' - PR 683 will-moore 'Add touch support for clicking on single panel' - PR 680 will-moore 'Use --pre install for export script in README' - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' - PR 666 will-moore 'Standalone app' - PR 676 dependabot[bot] 'Bump picomatch' - PR 669 will-moore 'Standalone python script' - PR 662 will-moore 'Export script handles OME-zarr images' - PR 663 will-moore 'Zarr' - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' - PR 667 Tom-TBT 'Label suggestion interface' - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' - PR 664 Nirkan 'Handle many channels ' - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' - PR 649 jburel 'Replace manual changelog by automated GH release step' - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' - PR 637 Rdornier 'Fix scalebar position' - PR 600 Rdornier 'Label on rois' - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' - PR 651 Rdornier 'More compliant align to grid' - PR 650 jburel 'Bump Python version' - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' - PR 610 will-moore 'Add docs/contributing.rst' - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' - PR 646 JensWendt 'fix word wrap of image names' - PR 612 will-moore 'Script version' - PR 630 will-moore 'Fix color and position for ALL new panel insets' - PR 616 Rdornier 'Fix labels around border' - PR 605 Tom-TBT 'Colorbar feature' - PR 638 Rdornier 'Fix arrow opacity' - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' - PR 635 dependabot[bot] 'Bump esbuild and vite' - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 706 will-moore 'Figure repo migration' Repository: ome/omero-fpbioimage Already up to date. Merged PRs: - PR 18 jburel 'default size z value' - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-gallery Already up to date. Merged PRs: - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' - PR 114 dependabot[bot] 'Bump tar and fsevents' - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' Conflicting PRs (not included): - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' Repository: ome/omero-iviewer Excluded PRs: - PR 420 will-moore 'Add release process to README' (exclude comment) - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) Updating 7a798cee..6c554250 Previously merged: - PR 562 will-moore 'Keyboard select roi' - PR 563 will-moore 'Use POST data for imgRdef save' - PR 559 dependabot[bot] 'Bump js-yaml and mocha' - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' - PR 541 will-moore 'Only add channel to tile request string if active' - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' - PR 535 dependabot[bot] 'Bump tmp and eslint' - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' - PR 529 will-moore 'Image id and roi id initial params' - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' - PR 513 jburel 'Bump Python version' - PR 512 jburel 'Replace manual changelog by automated GH release step' - PR 465 will-moore 'Save as Figure' - PR 517 will-moore 'Fix roi link permissions' - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' - PR 510 joshmoore 'Re-enable omero-test-infra' - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 471 will-moore 'Z projection disabled tooltip' - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' - PR 565 dependabot[bot] 'Bump qs and body-parser' - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' Conflicting PRs (not included): - PR 532 will-moore 'Zarr layers' Repository: ome/omero-mapr Excluded PRs: - PR 79 will-moore 'Right panel title' (exclude comment) - PR 74 will-moore 'mapr extension of webclient' (exclude comment) Already up to date. Merged PRs: - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' - PR 98 JoshuaFortriede 'use namespace with keys' Conflicting PRs (not included): - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-metadata Updating 3cd120c..6a653e4 Previously merged: - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Merged PRs: - PR 92 dominikl 'add resolve_rois to projectwrapper' Conflicting PRs (not included): - PR 55 kkoz 'Prevent users from creating columns with python keyword names' - PR 64 will-moore 'Support images_by_name for Screen and Plate' Repository: ome/omero-parade Excluded PRs: - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) - PR 39 chris-allan 'Expand all for Screens' (exclude comment) Already up to date. Merged PRs: - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' Repository: ome/omero-prometheus-tools Already up to date. Merged PRs: - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-rois Excluded PRs: - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) Updating bdfeb5e..fc9ff96 Previously merged: - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' - PR 35 will-moore 'Add roi to array functions' Repository: ome/omero-signup Already up to date. Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Conflicting PRs (not included): - PR 14 manics 'Add pre-commit (black, flake8)' Repository: openmicroscopy/omero-test-infra Excluded PRs: - PR 75 marimeireles 'Microservices' (user: marimeireles) Updating cda3ec6..c8a0015 Previously merged: - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' - PR 82 jburel 'Upgrade python' - PR 81 erickmartins 'add ulimits to omero-server container' Merged PRs: - PR 74 joshmoore 'Add 'ms' target for ./docker' Repository: ome/omero-upload Already up to date. Merged PRs: - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-virtual-microscope Updating deab817..160d894 Previously merged: - PR 20 jburel 'Build' Merged PRs: - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/omero-web-zarr Excluded PRs: - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) Updating 8f3c313..4e1e685 Previously merged: - PR 23 lubianat 'Fix mix of .rst and .md on README' - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' Merged PRs: - PR 21 will-moore 'Web zarr import' Conflicting PRs (not included): - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' Repository: openmicroscopy/omero-weberror Already up to date. Merged PRs: - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: openmicroscopy/omero-webtest Already up to date. Merged PRs: - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' Repository: ome/rOMERO-gateway Already up to date. Repository: ome/scripts Updating 4b4c755..5b4d768 Previously merged: - PR 231 jburel 'Create Release ' - PR 229 Rdornier 'Adding support for custom user label' - PR 223 will-moore 'don't attempt ROI stats on big images' - PR 230 Rdornier 'Import from csv fix' - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' - PR 227 jburel 'Replace tostring by tobytes' - PR 225 will-moore 'Fix param names and assertion texts in tests' Merged PRs: - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' Generated by OMERO-plugins-push#92 (https://merge-ci.openmicroscopy.org/jenkins/job/OMERO-plugins-push/92/)' 2026-09-28 23:50:34,165 [ scc.git] DEBUG [detached HEAD 2d04a0d] merge master -Dorg -Ssuccess-only 2026-09-28 23:50:34,165 [ scc.git] DEBUG 24 files changed, 46 insertions(+), 46 deletions(-) 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/omero-plugins 2026-09-28 23:50:34,167 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 429 dependabot[bot] 'Bump scripts from `312afbe` to `4b4c755`' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 432 dependabot[bot] 'Bump omero-figure from `fb316a7` to `9cc36cd`' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 433 dependabot[bot] 'Bump omero-iviewer from `b4102d4` to `7a798ce`' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/figure 2026-09-28 23:50:34,167 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 12 will-moore 'Browser based export' (stage: draft) 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 9 will-moore 'Save omezarr collection' (stage: draft) 2026-09-28 23:50:34,167 [ scc.merge] INFO Updating 3935875..833a7e1 2026-09-28 23:50:34,167 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 14 will-moore 'App served by omero env' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 17 Rdornier 'Do not crop rotated panel at export' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 15 will-moore 'Replace navbar 'OMERO' with 'figure' and OME logo' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 5 will-moore 'Add sample_figures/ngff_images_figure.json' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 19 Rdornier 'Fix rectangle crop' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 20 will-moore 'Hide export dropdown unless omero' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/minimal-omero-client 2026-09-28 23:50:34,167 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/omero-cli-duplicate 2026-09-28 23:50:34,167 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 18 joshmoore 'Enable pipeline of duplicate output to, e.g., chgrp' (exclude comment) 2026-09-28 23:50:34,167 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 29 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/omero-cli-render 2026-09-28 23:50:34,167 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 52 manics ' Add batchset for rendering a hierarchy of containers (single file)' (stage: draft) 2026-09-28 23:50:34,167 [ scc.merge] INFO Updating ce6e13c..68b7303 2026-09-28 23:50:34,167 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 74 jburel 'Replace manual changelog by automated GH release step' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 75 jburel 'Sort the new channels to ensure settings are set' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 71 dominikl 'Escape slash character in image names' 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 69 dominikl 'Fix help text for impo/export commands' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,167 [ scc.merge] INFO - PR 59 will-moore 'Apply settings to Plate' 2026-09-28 23:50:34,167 [ scc.merge] INFO 2026-09-28 23:50:34,167 [ scc.merge] INFO Repository: ome/omero-cli-zarr 2026-09-28 23:50:34,167 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 166 will-moore 'Downsample scale option' (stage: draft) 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 162 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 123 will-moore 'Support export of Fileset:ID' (exclude comment) 2026-09-28 23:50:34,168 [ scc.merge] INFO Updating 11d3587..d5f88d8 2026-09-28 23:50:34,168 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 193 dominikl 'Only parse import uris if stated' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 182 will-moore 'Revert "Remove support for Plate import"' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 194 will-moore 'Update uk1s3.embassy links to livingobjects' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 197 pwalczysko 'Fix pragma' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 196 will-moore 'Storage options only if needed' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 172 will-moore 'Use zarr v3 and updated ome-zarr-py' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 192 jburel 'Set Omero pixel size' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 186 jburel 'Create release from tag' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 187 dominikl 'Fix target-by-name option' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 180 will-moore 'Import command' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 179 will-moore 'Changelog 0.6.0' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 177 jburel 'Replace fromstring by frombuffer' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 175 will-moore 'Pin ome-zarr-py <0.12.0' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 147 will-moore 'Name option' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 173 will-moore 'Add test_export_plate_polygons()' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 171 will-moore 'Initial addition of integration tests' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 168 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,168 [ scc.merge] INFO 2026-09-28 23:50:34,168 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 174 will-moore 'Skip wells' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 178 will-moore 'Fix export of masks with multi-theC as multi-channel labels' 2026-09-28 23:50:34,168 [ scc.merge] INFO 2026-09-28 23:50:34,168 [ scc.merge] INFO Repository: ome/omero-figure 2026-09-28 23:50:34,168 [ scc.merge] INFO Updating 9cc36cde..3195c3df 2026-09-28 23:50:34,168 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 704 jburel 'Revert commit 49ae9c9' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 703 will-moore 'Readme remove rc' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 700 will-moore 'Fix parentheses in zoom level for loop for export script' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 692 will-moore 'colorbar lut background fix' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 701 will-moore 'bump nanoid to 3.3.18 with 'npm audit fix'' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 698 dependabot[bot] 'Bump dompurify from 3.4.9 to 3.4.13' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 697 dependabot[bot] 'Bump postcss from 8.5.15 to 8.5.25' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 695 dependabot[bot] 'Bump immutable from 5.1.6 to 5.1.9' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 693 dependabot[bot] 'Bump dompurify from 3.4.0 to 3.4.9' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 691 dependabot[bot] 'Bump esbuild and vite' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 686 will-moore 'Add note about zarr etc requirement for export script with zarr images' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 690 dependabot[bot] 'Bump postcss from 8.5.3 to 8.5.15' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 681 dependabot[bot] 'Bump dompurify from 3.3.2 to 3.4.0' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 688 will-moore 'app handles ?image=1 without needing /new?image=1' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 685 will-moore 'Fix static files links for release build' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 683 will-moore 'Add touch support for clicking on single panel' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 680 will-moore 'Use --pre install for export script in README' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 684 will-moore 'Fix PKG_VERSION fix in publish_pypi.yml' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 682 will-moore 'Enable pre-release rc workflow with bumpversion and publish to pypi' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 679 will-moore 'Remove commit from gist demoUrl to load latest, with livingobjects URLs' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 677 dependabot[bot] 'Bump vite from 6.4.1 to 6.4.2' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 666 will-moore 'Standalone app' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 676 dependabot[bot] 'Bump picomatch' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 669 will-moore 'Standalone python script' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 662 will-moore 'Export script handles OME-zarr images' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 663 will-moore 'Zarr' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 674 dependabot[bot] 'Bump immutable from 4.1.0 to 4.3.8' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 675 dependabot[bot] 'Bump dompurify from 3.2.4 to 3.3.2' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 671 dependabot[bot] 'Bump underscore from 1.13.4 to 1.13.8' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 672 Tom-TBT 'Fix field label list and right panel view CSS issues' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 667 Tom-TBT 'Label suggestion interface' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 665 Tom-TBT 'Ensure projection parameters are within bounds in loadJSON and setID' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 656 Tom-TBT 'Option to add roi comment when adding ROI from OMERO' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 670 dependabot[bot] 'Bump rollup from 4.39.0 to 4.59.0' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 664 Nirkan 'Handle many channels ' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 654 Tom-TBT 'Refresh metadata button to reload channel names, pixel sizes' 2026-09-28 23:50:34,168 [ scc.merge] INFO - PR 648 kaabl 'Add well and field label for high-content screening data, fixes #540' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 661 Rdornier 'Align to grid - check if panels are already in the grid' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 649 jburel 'Replace manual changelog by automated GH release step' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 657 will-moore 'Avoid division by zero and don't save x/y NaN in grid layout' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 637 Rdornier 'Fix scalebar position' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 600 Rdornier 'Label on rois' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 653 Nirkan 'Fix Crop dialog scrolling for arbitary angles' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 651 Rdornier 'More compliant align to grid' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 650 jburel 'Bump Python version' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 647 Rdornier 'enable dragging and resizing shapes without having to select it multi…' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 610 will-moore 'Add docs/contributing.rst' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 644 dependabot[bot] 'Bump vite from 6.2.6 to 6.4.1' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 646 JensWendt 'fix word wrap of image names' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 612 will-moore 'Script version' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 630 will-moore 'Fix color and position for ALL new panel insets' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 616 Rdornier 'Fix labels around border' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 605 Tom-TBT 'Colorbar feature' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 638 Rdornier 'Fix arrow opacity' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 633 dependabot[bot] 'Bump dompurify from 2.5.4 to 3.2.4' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 635 dependabot[bot] 'Bump esbuild and vite' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 623 will-moore 'Fix wrapping of label X button. see issues/622' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 631 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 706 will-moore 'Figure repo migration' 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Repository: ome/omero-fpbioimage 2026-09-28 23:50:34,169 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 18 jburel 'default size z value' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 31 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Repository: ome/omero-gallery 2026-09-28 23:50:34,169 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 113 dependabot[bot] 'Bump elliptic from 6.5.4 to 6.6.1' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 114 dependabot[bot] 'Bump tar and fsevents' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 116 dependabot[bot] 'Bump browserify-sign from 4.0.4 to 4.2.3' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 117 dependabot[bot] 'Bump cross-spawn from 6.0.5 to 6.0.6' 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 115 dependabot[bot] 'Bump micromatch, webpack-cli and webpack' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 118 dependabot[bot] 'Bump braces, webpack-cli and webpack' 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 119 dependabot[bot] 'Bump serialize-javascript and webpack' 2026-09-28 23:50:34,169 [ scc.merge] INFO 2026-09-28 23:50:34,169 [ scc.merge] INFO Repository: ome/omero-iviewer 2026-09-28 23:50:34,169 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 420 will-moore 'Add release process to README' (exclude comment) 2026-09-28 23:50:34,169 [ scc.merge] INFO - PR 372 will-moore 'viewport URL includes z-plane' (exclude comment) 2026-09-28 23:50:34,170 [ scc.merge] INFO Updating 7a798cee..6c554250 2026-09-28 23:50:34,170 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 562 will-moore 'Keyboard select roi' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 563 will-moore 'Use POST data for imgRdef save' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 559 dependabot[bot] 'Bump js-yaml and mocha' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 558 dependabot[bot] 'Bump fast-uri from 3.1.4 to 3.1.5' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 557 dependabot[bot] 'Bump socket.io-parser from 4.2.6 to 4.2.7' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 541 will-moore 'Only add channel to tile request string if active' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 556 dependabot[bot] 'Bump webpack-dev-server from 5.2.6 to 6.0.0' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 554 dependabot[bot] 'Bump http-proxy-middleware from 2.0.9 to 2.0.10' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 553 dependabot[bot] 'Bump postcss from 8.5.10 to 8.5.25' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 552 dependabot[bot] 'Bump tmp from 0.2.6 to 0.2.7' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 551 dependabot[bot] 'Bump body-parser from 1.20.5 to 1.20.6' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 550 dependabot[bot] 'Bump webpack-dev-server from 5.2.4 to 5.2.6' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 549 dependabot[bot] 'Bump shell-quote from 1.8.4 to 1.10.0' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 548 dependabot[bot] 'Bump fast-uri from 3.1.2 to 3.1.4' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 547 dependabot[bot] 'Bump websocket-driver from 0.7.4 to 0.7.5' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 540 dependabot[bot] 'Bump @babel/core from 7.5.4 to 7.29.6' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 539 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 537 dependabot[bot] 'Bump launch-editor from 2.13.2 to 2.14.1' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 535 dependabot[bot] 'Bump tmp and eslint' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 527 PollenGeo 'Add grid overlay feature with configurable cell size and labels' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 534 will-moore 'Fix settings.md link to master branch. Move iviewer redirect settings' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 533 dependabot[bot] 'Bump ws, engine.io and socket.io-adapter' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 530 dependabot[bot] 'Bump webpack-dev-server from 4.13.2 to 5.2.4' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 528 dependabot[bot] 'Bump fast-uri from 3.1.0 to 3.1.2' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 529 will-moore 'Image id and roi id initial params' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 526 will-moore 'Add keyboard handling for Left, Right, Up, Down Arrows to pan' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 525 dependabot[bot] 'Bump postcss from 8.4.31 to 8.5.10' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 524 dependabot[bot] 'Bump protocol-buffers-schema from 3.3.2 to 3.6.1' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 523 dependabot[bot] 'Bump follow-redirects from 1.15.6 to 1.16.0' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 522 dependabot[bot] 'Bump lodash from 4.17.21 to 4.18.1' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 521 dependabot[bot] 'Bump brace-expansion from 1.1.11 to 1.1.13' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 520 dependabot[bot] 'Bump node-forge from 1.3.1 to 1.4.0' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 519 dependabot[bot] 'Bump picomatch from 2.3.1 to 2.3.2' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 518 dependabot[bot] 'Bump ajv from 6.12.6 to 6.14.0' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 514 Tom-TBT 'Fix where interpolate_pixels server config is read from' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 513 jburel 'Bump Python version' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 512 jburel 'Replace manual changelog by automated GH release step' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 465 will-moore 'Save as Figure' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 517 will-moore 'Fix roi link permissions' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 516 dependabot[bot] 'Bump socket.io-parser from 4.2.4 to 4.2.6' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 510 joshmoore 'Re-enable omero-test-infra' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 506 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 471 will-moore 'Z projection disabled tooltip' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 564 dependabot[bot] 'Bump fast-uri from 3.1.5 to 3.1.7' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 565 dependabot[bot] 'Bump qs and body-parser' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 566 dependabot[bot] 'Bump js-yaml from 4.1.0 to 4.3.2' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 567 will-moore 'Basic fix of prev/next shapes when shapes sorted' 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 532 will-moore 'Zarr layers' 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Repository: ome/omero-mapr 2026-09-28 23:50:34,170 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 79 will-moore 'Right panel title' (exclude comment) 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 74 will-moore 'mapr extension of webclient' (exclude comment) 2026-09-28 23:50:34,170 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 94 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 97 JoshuaFortriede 'BUG Fix: use HTML value to replace HTML' 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 98 JoshuaFortriede 'use namespace with keys' 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,170 [ scc.merge] INFO - PR 95 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,170 [ scc.merge] INFO 2026-09-28 23:50:34,170 [ scc.merge] INFO Repository: ome/omero-metadata 2026-09-28 23:50:34,171 [ scc.merge] INFO Updating 3cd120c..6a653e4 2026-09-28 23:50:34,171 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 95 sbesson 'Remove manual CHANGELOG in favor of automated GitHub releases' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 94 sbesson 'Cap pandas to 2.x and clean up unused dependencies' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 90 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 92 dominikl 'add resolve_rois to projectwrapper' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 55 kkoz 'Prevent users from creating columns with python keyword names' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 64 will-moore 'Support images_by_name for Screen and Plate' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: ome/omero-parade 2026-09-28 23:50:34,171 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 139 will-moore 'JS code handles 'tag' node in jsTree' (stage: draft) 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 94 will-moore 'Move axes state to Layout from Plot' (exclude comment) 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 86 will-moore 'Support filtering by OMERO.tables on Dataset' (exclude comment) 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 39 chris-allan 'Expand all for Screens' (exclude comment) 2026-09-28 23:50:34,171 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 140 dependabot[bot] 'Bump vite from 4.2.3 to 4.5.9' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 141 dependabot[bot] 'Bump axios from 1.6.0 to 1.8.2' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 142 will-moore 'Use the release/v1 branch for the PyPA action publishing to PyPI' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: ome/omero-prometheus-tools 2026-09-28 23:50:34,171 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 16 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: ome/omero-rois 2026-09-28 23:50:34,171 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 32 pre-commit-ci[bot] '[pre-commit.ci] pre-commit autoupdate' (user: pre-commit-ci[bot]) 2026-09-28 23:50:34,171 [ scc.merge] INFO Updating bdfeb5e..fc9ff96 2026-09-28 23:50:34,171 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 36 will-moore 'Use pypa/gh-action-pypi-publish@release/v1 in publish_pypi.yml' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 35 will-moore 'Add roi to array functions' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: ome/omero-signup 2026-09-28 23:50:34,171 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 14 manics 'Add pre-commit (black, flake8)' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: openmicroscopy/omero-test-infra 2026-09-28 23:50:34,171 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 75 marimeireles 'Microservices' (user: marimeireles) 2026-09-28 23:50:34,171 [ scc.merge] INFO Updating cda3ec6..c8a0015 2026-09-28 23:50:34,171 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 84 joshmoore 'Remove use of OMERO_SERVER_PORT' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 82 jburel 'Upgrade python' 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 81 erickmartins 'add ulimits to omero-server container' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,171 [ scc.merge] INFO - PR 74 joshmoore 'Add 'ms' target for ./docker' 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,171 [ scc.merge] INFO Repository: ome/omero-upload 2026-09-28 23:50:34,171 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,171 [ scc.merge] INFO 2026-09-28 23:50:34,172 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,172 [ scc.merge] INFO - PR 14 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,172 [ scc.merge] INFO 2026-09-28 23:50:34,172 [ scc.merge] INFO Repository: ome/omero-virtual-microscope 2026-09-28 23:50:34,172 [ scc.merge] INFO Updating deab817..160d894 2026-09-28 23:50:34,172 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 20 jburel 'Build' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 22 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Repository: ome/omero-web-zarr 2026-09-28 23:50:34,173 [ scc.merge] INFO Excluded PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 16 will-moore 'Vizarr for s3 ngff' (stage: draft) 2026-09-28 23:50:34,173 [ scc.merge] INFO Updating 8f3c313..4e1e685 2026-09-28 23:50:34,173 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 23 lubianat 'Fix mix of .rst and .md on README' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 20 will-moore 'Use zarr_format=2 for .zarray and chunk endpoints' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 21 will-moore 'Web zarr import' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Conflicting PRs (not included): 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 10 will-moore 'Add Openwith -> itk-vtk viewer' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Repository: openmicroscopy/omero-weberror 2026-09-28 23:50:34,173 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 25 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Repository: openmicroscopy/omero-webtest 2026-09-28 23:50:34,173 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 37 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.8.14 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Repository: ome/rOMERO-gateway 2026-09-28 23:50:34,173 [ scc.merge] INFO Already up to date. 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Repository: ome/scripts 2026-09-28 23:50:34,173 [ scc.merge] INFO Updating 4b4c755..5b4d768 2026-09-28 23:50:34,173 [ scc.merge] INFO Previously merged: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 231 jburel 'Create Release ' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 229 Rdornier 'Adding support for custom user label' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 223 will-moore 'don't attempt ROI stats on big images' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 230 Rdornier 'Import from csv fix' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 228 dependabot[bot] 'Bump pypa/gh-action-pypi-publish from 1.3.0 to 1.13.0 in /.github/workflows' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 227 jburel 'Replace tostring by tobytes' 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 225 will-moore 'Fix param names and assertion texts in tests' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] INFO Merged PRs: 2026-09-28 23:50:34,173 [ scc.merge] INFO - PR 232 muhanadz 'Add Auto header detection to `Populate_Metadata.py`' 2026-09-28 23:50:34,173 [ scc.merge] INFO 2026-09-28 23:50:34,173 [ scc.merge] DEBUG Cleaning remote branches created for merging 2026-09-28 23:50:34,173 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,221 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/figure 2026-09-28 23:50:34,221 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,238 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,239 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/minimal-omero-client 2026-09-28 23:50:34,239 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,255 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-duplicate 2026-09-28 23:50:34,255 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,272 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,273 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-render 2026-09-28 23:50:34,273 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,292 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-cli-zarr 2026-09-28 23:50:34,292 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,308 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,309 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-figure 2026-09-28 23:50:34,309 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,328 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-fpbioimage 2026-09-28 23:50:34,328 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,347 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-gallery 2026-09-28 23:50:34,347 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,366 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-iviewer 2026-09-28 23:50:34,366 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,385 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-mapr 2026-09-28 23:50:34,385 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,405 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-metadata 2026-09-28 23:50:34,405 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,423 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-parade 2026-09-28 23:50:34,423 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,442 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,442 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-prometheus-tools 2026-09-28 23:50:34,442 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,460 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-rois 2026-09-28 23:50:34,460 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,480 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-signup 2026-09-28 23:50:34,480 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,499 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-test-infra 2026-09-28 23:50:34,499 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,519 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-upload 2026-09-28 23:50:34,519 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,560 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-virtual-microscope 2026-09-28 23:50:34,560 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,579 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-web-zarr 2026-09-28 23:50:34,579 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,598 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-weberror 2026-09-28 23:50:34,598 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,618 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/omero-webtest 2026-09-28 23:50:34,618 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,636 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/rOMERO-gateway 2026-09-28 23:50:34,636 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push 2026-09-28 23:50:34,655 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push/scripts 2026-09-28 23:50:34,655 [ scc.git] DEBUG Calling 'git remote' 2026-09-28 23:50:34,674 [ scc.git] DEBUG cd /home/omero/workspace/OMERO-plugins-push Update component versions python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/figure/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/minimal-omero-client/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/installer.py:27: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. warnings.warn( WARNING: The wheel package is not available. WARNING: The wheel package is not available. /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:530: UserWarning: Normalizing '0.4.2dev0' to '0.4.2.dev0' warnings.warn(tmpl.format(**locals())) /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-iviewer/setup.py': [Errno 2] No such file or directory /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/omero-test-infra/setup.py': [Errno 2] No such file or directory WARNING: '' not a valid package name; please use only .-separated package names in setup.py WARNING: '' not a valid package name; please use only .-separated package names in setup.py /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( /home/omero/workspace/OMERO-plugins-push/build/venv/lib64/python3.11/site-packages/setuptools/dist.py:771: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead warnings.warn( python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory python3.11: can't open file '/home/omero/workspace/OMERO-plugins-push/rOMERO-gateway/setup.py': [Errno 2] No such file or directory grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Updating omero-gateway from 5.10.0 to 5.11.1-SNAPSHOT grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: grep: build.gradle: No such file or directory Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Up-to-date: Commit all component version changes Entering 'figure' Entering 'minimal-omero-client' Entering 'omero-cli-duplicate' Entering 'omero-cli-render' Entering 'omero-cli-zarr' Entering 'omero-figure' Entering 'omero-fpbioimage' Entering 'omero-gallery' Entering 'omero-iviewer' Entering 'omero-mapr' Entering 'omero-metadata' Entering 'omero-parade' Entering 'omero-prometheus-tools' Entering 'omero-rois' Entering 'omero-signup' Entering 'omero-test-infra' Entering 'omero-upload' Entering 'omero-virtual-microscope' Entering 'omero-web-zarr' Entering 'omero-weberror' Entering 'omero-webtest' Entering 'rOMERO-gateway' Entering 'scripts' Entering 'figure' HEAD detached from 3935875 nothing to commit, working tree clean Entering 'minimal-omero-client' [detached HEAD 6b44fb0] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Entering 'omero-cli-duplicate' HEAD detached from 4777ef8 nothing to commit, working tree clean Entering 'omero-cli-render' HEAD detached from ce6e13c nothing to commit, working tree clean Entering 'omero-cli-zarr' HEAD detached from 11d3587 Untracked files: (use "git add ..." to include in what will be committed) .eggs/ nothing added to commit but untracked files present (use "git add" to track) Entering 'omero-figure' HEAD detached from 9cc36cde nothing to commit, working tree clean Entering 'omero-fpbioimage' HEAD detached from 3b6c05a nothing to commit, working tree clean Entering 'omero-gallery' HEAD detached from 2a621da nothing to commit, working tree clean Entering 'omero-iviewer' HEAD detached from 7a798cee nothing to commit, working tree clean Entering 'omero-mapr' HEAD detached from 0a557da nothing to commit, working tree clean Entering 'omero-metadata' HEAD detached from 3cd120c nothing to commit, working tree clean Entering 'omero-parade' HEAD detached from fb5ae86 nothing to commit, working tree clean Entering 'omero-prometheus-tools' HEAD detached from eb47378 nothing to commit, working tree clean Entering 'omero-rois' HEAD detached from bdfeb5e nothing to commit, working tree clean Entering 'omero-signup' HEAD detached from be76813 nothing to commit, working tree clean Entering 'omero-test-infra' HEAD detached from cda3ec6 nothing to commit, working tree clean Entering 'omero-upload' HEAD detached from 100f6ae nothing to commit, working tree clean Entering 'omero-virtual-microscope' HEAD detached from deab817 nothing to commit, working tree clean Entering 'omero-web-zarr' HEAD detached from 8f3c313 nothing to commit, working tree clean Entering 'omero-weberror' HEAD detached from 70b01ed nothing to commit, working tree clean Entering 'omero-webtest' HEAD detached from 5bfef29 nothing to commit, working tree clean Entering 'rOMERO-gateway' HEAD detached from 7b5d64d nothing to commit, working tree clean Entering 'scripts' HEAD detached from 4b4c755 nothing to commit, working tree clean [detached HEAD 9b07937] Update component versions 1 file changed, 1 insertion(+), 1 deletion(-) Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 2026-09-28 23:51:57,637 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-test-infra to /repositories/111908919 Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 2026-09-28 23:52:07,674 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-weberror to /repositories/38373425 Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 2026-09-28 23:52:10,304 [github.Reque] INFO Following Github server redirection from /repos/openmicroscopy/omero-webtest to /repositories/25970383 Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-28 23:52:15,730 [github.Reque] INFO Following Github server redirection from /repos/ome/scripts to /repositories/4865545 2026-09-28 23:53:17,272 [ scc.push] INFO Merged 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