Started by upstream project "Trigger" build number 26 originally caused by: Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins5800350202277575869.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop Server not running + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 17 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 15 Copied 2 artifacts from "OMERO-build-build" build number 27 [OMERO-server] $ /bin/bash -xe /tmp/jenkins12179738232349380802.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip + ZIP=OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-637-6181d3b055-ice36-b17 + unzip OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip Archive: OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/blitz/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/grid/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/profiles/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/error/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/grid/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/misc/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/var/ creating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/var/tmp/ inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/LICENSE.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/backup.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/build.properties inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/env.bat inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/env.sh inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/hibernate.properties inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/ice.config inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/logback-cli.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/logback.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/mime.types inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/node1.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/node2.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/omero.properties inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/profiles/psql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/rollover.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/grid/README inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/ice.config inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/master.cfg inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/templates/robot.template inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/etc/testdropbox.config inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/history.rst inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/activation.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/antlr.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/asm.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/base.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/btm.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-dbcp2.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-io.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-lang.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-lang3.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-logging.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-math.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-math3.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/commons-pool2.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/dom4j.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/ehcache.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/error_prone_annotations.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/failureaccess.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/client/filters.jar inflating: 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OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/solr-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/solr-solrj.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/specification.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-aop.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-beans.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-context-support.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-context.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-expression.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-jdbc.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-jms.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-ldap-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-messaging.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-orm.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-security-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-security-ldap.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/spring-tx.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/sqlite-jdbc.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/subethasmtp.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/turbojpeg.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/uzaygezen-core.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xalan.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xercesImpl.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xml-apis-ext.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xml-apis.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xmlgraphics-commons.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xmpcore.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/lib/server/xpp3.jar inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/README inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/agpl.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/antlr.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/apache-v1.1.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/apache-v2.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/asm.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/bouncy_castle_license.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/bsd.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/cddl-v1.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/cpl-v10.html inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/crystalclear.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/django.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/dom4j.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/epl-v1.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/fbsd.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/freemarker.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/mit.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/path.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/pil.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/postgresql.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/psf-v2.0.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/psf-v2.5.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/scons.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/slf4j.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/tablelayout.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/which.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/zlib-libpng.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/share/licenses/zpl-v2.1.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/README.txt inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/misc/Makefile inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/misc/current.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/misc/enums.py inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__1/OMERO3__7.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__10/OMERO3A__9.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__11/OMERO3A__10.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__11/OMERO3A__5.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__2/OMERO3A__1.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__3/OMERO3A__2.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__3/OMERO3__5.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__4/OMERO3A__3.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__4/OMERO3__5.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__5/OMERO3A__4.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-637-6181d3b055-ice36-b17/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-637-6181d3b055-ice36-b17.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-637-6181d3b055-ice36-b17 /home/omero/workspace/OMERO-server/OMERO.server + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-26.1.2-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-26.1.2 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.8 MB/s 0:00:02 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB) Using cached markdown-3.10.2-py3-none-any.whl (108 kB) Installing collected packages: markdown Successfully installed markdown-3.10.2 + pip install reportlab Collecting reportlab Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB) Collecting charset-normalizer (from reportlab) Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB) Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB) Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB) Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB) Installing collected packages: pillow, charset-normalizer, reportlab Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0 + pip install omego Collecting omego Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached omego-0.8.0-py3-none-any.whl (41 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-26.2-py3-none-any.whl.metadata (3.5 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Collecting pydantic (from blosc2>=2.3.0->tables) Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB) Collecting httpx[http2] (from blosc2>=2.3.0->tables) Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB) Collecting rich (from blosc2>=2.3.0->tables) Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB) Collecting threadpoolctl (from blosc2>=2.3.0->tables) Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB) Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables) Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB) Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables) Downloading certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB) Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables) Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB) Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables) Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB) Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables) Using cached h2-4.3.0-py3-none-any.whl.metadata (5.1 kB) Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB) Collecting hpack<5,>=4.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables) Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB) Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables) Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB) Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables) Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB) Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables) Using cached annotated_types-0.7.0-py3-none-any.whl.metadata (15 kB) Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables) Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables) Using cached typing_inspection-0.4.2-py3-none-any.whl.metadata (2.6 kB) Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables) Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB) Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables) Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB) Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables) Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB) Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) Using cached blosc2-4.9.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.3 MB) Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB) Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) Using cached httpx-0.28.1-py3-none-any.whl (73 kB) Using cached h2-4.3.0-py3-none-any.whl (61 kB) Using cached hpack-4.2.0-py3-none-any.whl (34 kB) Using cached httpcore-1.0.9-py3-none-any.whl (78 kB) Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB) Using cached h11-0.16.0-py3-none-any.whl (37 kB) Using cached anyio-4.14.2-py3-none-any.whl (125 kB) Using cached idna-3.18-py3-none-any.whl (65 kB) Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB) Downloading certifi-2026.7.22-py3-none-any.whl (136 kB) Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) Using cached packaging-26.2-py3-none-any.whl (100 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Using cached pydantic-2.13.4-py3-none-any.whl (472 kB) Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached annotated_types-0.7.0-py3-none-any.whl (13 kB) Using cached typing_inspection-0.4.2-py3-none-any.whl (14 kB) Using cached rich-15.0.0-py3-none-any.whl (310 kB) Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB) Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB) Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB) Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB) Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables Successfully installed annotated-types-0.7.0 anyio-4.14.2 blosc2-4.9.1 certifi-2026.7.22 h11-0.16.0 h2-4.3.0 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.2 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.2 typing_extensions-4.16.0 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 + pip install omero-py Collecting omero-py Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0) Collecting PyYAML (from omero-py) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Collecting requests (from omero-py) Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB) Collecting portalocker (from omero-py) Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18) Collecting urllib3<3,>=1.26 (from requests->omero-py) Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22) Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Using cached requests-2.34.2-py3-none-any.whl (73 kB) Using cached urllib3-2.7.0-py3-none-any.whl (131 kB) Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 requests-2.34.2 urllib3-2.7.0 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-xhamhhqc/omero-metadata_f2f90a249f494f74b5cac140d59abb1a Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-xhamhhqc/omero-metadata_f2f90a249f494f74b5cac140d59abb1a Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit dee7d5befc8e9063214b4939d4dbcc632ae7f539 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) Collecting pandas (from omero-metadata) Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22) Using cached pandas-3.0.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=b4dc7ee4b0890d475d42e5c673a5e223030fd389209e4e9691ff03760300e3a1 Stored in directory: /tmp/pip-ephem-wheel-cache-ytqbmak4/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: python-dateutil, pandas, omero-metadata Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.3 python-dateutil-2.9.0.post0 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-xvjiy_83/omero-cli-render_90c0893293544c32ab7f28662f8457f9 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-xvjiy_83/omero-cli-render_90c0893293544c32ab7f28662f8457f9 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 72e42a76a4117a0c3d7f4ef264883bb874b34d21 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19838 sha256=34748a3ea1fc9716e556307973b8fdd4464f964e55873481f7f0bd3f9b849a16 Stored in directory: /tmp/pip-ephem-wheel-cache-o8isw0zs/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-nodx6rxf/omero-cli-duplicate_24c0ff7534a14c1b9639a0841f1dba60 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-nodx6rxf/omero-cli-duplicate_24c0ff7534a14c1b9639a0841f1dba60 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 85008b90d699750527c67c4f45b5c076f5ccda26 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11538 sha256=24832be8ba95da820494fbfbedd76e2e0acfc218a9f96754284ecbb211d78d3b Stored in directory: /tmp/pip-ephem-wheel-cache-ouskswit/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr Collecting omero-cli-zarr Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-4ws6ikme/omero-cli-zarr_d04e70d288764986ae9de6897c7f06ab Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-4ws6ikme/omero-cli-zarr_d04e70d288764986ae9de6897c7f06ab Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 23736d7fd7ce415add4e923fcab48e05d147e3ee Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Installing backend dependencies: started Installing backend dependencies: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1) Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB) Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6) Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB) Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached fsspec-2026.6.0-py3-none-any.whl.metadata (10 kB) Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiohttp-3.14.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2) Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB) Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB) Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2) Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached s3fs-2026.6.0-py3-none-any.whl.metadata (1.2 kB) Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB) Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB) Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB) Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.7.0) Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB) Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0) Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.2) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0) Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiobotocore-3.8.0-py3-none-any.whl.metadata (29 kB) Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) Collecting botocore<1.43.47,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached botocore-1.43.46-py3-none-any.whl.metadata (5.6 kB) Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB) Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB) Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB) Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB) Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.47,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0) Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.18) Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB) Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB) Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22) Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB) Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB) Using cached click-8.4.2-py3-none-any.whl (119 kB) Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) Using cached fsspec-2026.6.0-py3-none-any.whl (203 kB) Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB) Using cached pydantic-2.12.5-py3-none-any.whl (463 kB) Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB) Using cached partd-1.4.2-py3-none-any.whl (18 kB) Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB) Using cached s3fs-2026.6.0-py3-none-any.whl (32 kB) Using cached aiobotocore-3.8.0-py3-none-any.whl (91 kB) Using cached aiohttp-3.14.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) Using cached botocore-1.43.46-py3-none-any.whl (15.4 MB) Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) Using cached wrapt-2.2.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (159 kB) Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB) Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB) Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) Using cached attrs-26.1.0-py3-none-any.whl (67 kB) Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB) Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) Using cached imageio-2.37.4-py3-none-any.whl (318 kB) Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) Using cached toolz-1.1.0-py3-none-any.whl (58 kB) Using cached zarr-3.1.6-py3-none-any.whl (295 kB) Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) Using cached zipp-4.1.0-py3-none-any.whl (10 kB) Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) Building wheels for collected packages: omero-cli-zarr Building wheel for omero-cli-zarr (pyproject.toml): started Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+g23736d7-py3-none-any.whl size=38288 sha256=8dd933677c9104b65f2ae09562c5a446df1825765f9162866a63b39551f2b4ed Stored in directory: /tmp/pip-ephem-wheel-cache-gpfm1ds0/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 Successfully built omero-cli-zarr Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr Attempting uninstall: pydantic-core Found existing installation: pydantic_core 2.46.4 Uninstalling pydantic_core-2.46.4: Successfully uninstalled pydantic_core-2.46.4 Attempting uninstall: pydantic Found existing installation: pydantic 2.13.4 Uninstalling pydantic-2.13.4: Successfully uninstalled pydantic-2.13.4 Successfully installed Deprecated-1.3.1 aiobotocore-3.8.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.2 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.46 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.6.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev162+g23736d7 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.6.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.2.2 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49153 sha256=a57cf18c94eff8902d80b1002f586423af9f9df698dc426013dfdd235c899e0a Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.2.dev0.tar.gz Processing ./omero_marshal-0.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88129 sha256=60d6815d93007bf01a72744aaaa07ab83a16845d0a87be64c8349185cc56c878 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.2.dev0 + for x in *.tar.gz + pip install -U omero_py-5.22.2.dev0.tar.gz Processing ./omero_py-5.22.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.6) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.3.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.34.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.7.22) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2787060 sha256=3b0c4f74cb45a0e157f676b78d8bbea5f05be1d58e86d0289b53fc081c5dcead Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.22.1 Uninstalling omero-py-5.22.1: Successfully uninstalled omero-py-5.22.1 Successfully installed omero-py-5.22.2.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.10.1.dev0.tar.gz Processing ./omero_scripts-5.10.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137216 sha256=273ef5343c56d9e644164907f19ab2d660721b95c13d21eb8b61a817d2c9482c Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.10.1.dev0 + for x in *.tar.gz + pip install -U omero_web-5.32.1.dev0.tar.gz Processing ./omero_web-5.32.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.22.2.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0) Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0) Using cached django-5.2.16-py3-none-any.whl.metadata (4.1 kB) Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0) Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0) Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0) Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB) Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0) Collecting pytz (from omero-web==5.32.1.dev0) Using cached pytz-2026.2-py2.py3-none-any.whl.metadata (22 kB) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (3.2.0) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.2) Collecting importlib-resources (from omero-web==5.32.1.dev0) Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB) Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0) Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1) Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18) Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0) Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django-5.2.16-py3-none-any.whl (8.3 MB) Using cached asgiref-3.12.1-py3-none-any.whl (25 kB) Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB) Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) Using cached pytz-2026.2-py2.py3-none-any.whl (510 kB) Using cached wheel-0.47.0-py3-none-any.whl (32 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820645 sha256=1fb474c29d9ab345a5d4aa84fa35fe6a83d0e70077b199d1957c33b95a0682f1 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f Successfully built omero-web Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web Successfully installed Django-5.2.16 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 pytz-2026.2 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2026-07-22 12:45:01-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.108.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 139337 (136K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 36% 2.75M 0s 50K .......... .......... .......... .......... .......... 73% 5.30M 0s 100K .......... .......... .......... ...... 100% 6.70M=0.03s 2026-07-22 12:45:02 (4.12 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' + omero certificates OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2026-07-22 12:46:04,744 [ omego.db] DEBUG dbcommand => upgrade 2026-07-22 12:46:04,744 [ omego.db] DEBUG dbhost => localhost 2026-07-22 12:46:04,744 [ omego.db] DEBUG dbname => OMERO-server 2026-07-22 12:46:04,744 [ omego.db] DEBUG dbpass => omero 2026-07-22 12:46:04,744 [ omego.db] DEBUG dbuser => omero 2026-07-22 12:46:04,744 [ omego.db] DEBUG rootpass => omero 2026-07-22 12:46:04,744 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2026-07-22 12:46:04,745 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-637-6181d3b055-ice36-b17 5.22.2.dev0 2026-07-22 12:46:09,802 [omego.extern] INFO Completed [5.057 s] 2026-07-22 12:46:09,802 [omego.extern] DEBUG Using omero CLI from omero 2026-07-22 12:46:09,803 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2026-07-22 12:46:09,803 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-07-22 12:46:09,803 [omego.extern] INFO Executing : omero config get --show-password 2026-07-22 12:46:14,684 [omego.extern] INFO Completed [4.881 s] 2026-07-22 12:46:14,684 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-07-22 12:46:14,684 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2026-07-22 12:46:14,766 [omego.extern] INFO Completed [0.082 s] 2026-07-22 12:46:14,766 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n' 2026-07-22 12:46:14,766 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14 2026-07-22 12:46:14,766 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-07-22 12:46:14,766 [omego.extern] INFO Executing : omero config get --show-password 2026-07-22 12:46:19,771 [omego.extern] INFO Completed [5.005 s] 2026-07-22 12:46:19,771 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-07-22 12:46:19,771 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2026-07-22 12:46:19,963 [omego.extern] INFO Completed [0.192 s] 2026-07-22 12:46:19,963 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.3") at port "5432".\n' 2026-07-22 12:46:19,963 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-07-22 12:46:19,963 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-07-22 12:46:19,963 [omego.extern] INFO Executing : omero config get --show-password 2026-07-22 12:46:25,237 [omego.extern] INFO Completed [5.273 s] 2026-07-22 12:46:25,237 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-07-22 12:46:25,237 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-07-22 12:46:25,993 [omego.extern] INFO Completed [0.756 s] 2026-07-22 12:46:25,993 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2026-07-22 12:46:25,993 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2026-07-22 12:46:26,044 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/a3d421b1-9991-42f6-9eb8-867f8e8779af/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 21.0.11 (/usr/bin/java) Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.14 (/usr/bin/psql) Commands: openssl version 3.5.527 (/usr/bin/openssl) Component: OMERO.py 5.22.2.dev0 Component: OMERO.server 5.6.3-637-6181d3b055-ice36-b17 Server: icegridnode running Server: Blitz-0 active (pid = 3313, enabled) Server: Indexer-0 active (pid = 3341, enabled) Server: OMERO.Glacier2 active (pid = 3342, enabled) Server: OMERO.IceStorm active (pid = 3367, enabled) Server: Processor-0 activating (enabled) Server: Tables-0 activating (enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 22.7 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 2.6 KB Log files: MonitorServer.log n/a Log files: Processor-0.log 592 B Log files: Tables-0.log 841 B Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.5 KB Log files: Total size 0.06 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx7200m JVM settings: Indexer-${index} -Xmx4800m JVM settings: PixelData-${index} -Xmx7200m JVM settings: Repository-${index} -Xmx4800m Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS