01:47:12 Started by upstream project "Trigger" build number 52
01:47:12 originally caused by:
01:47:12 Started by timer
01:47:12 Running as SYSTEM
01:47:12 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server
01:47:12 [OMERO-server] $ /bin/bash -xe /tmp/jenkins1897553327939399369.sh
01:47:12 + source /home/settings.env
01:47:12 ++ OMERO_DB_HOST=pg
01:47:12 ++ OMERO_DB_USER=postgres
01:47:12 ++ OMERO_DB_PASS=
01:47:12 ++ OMERO_ROOT_PASS=omero
01:47:12 ++ OMERO_DATA_DIR=/OMERO
01:47:12 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:47:12 + OMERO_DB_NAME=OMERO-server
01:47:12 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:47:12 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:47:12 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:47:12 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:47:12 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']'
01:47:12 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:47:12 ++ deactivate nondestructive
01:47:12 ++ '[' -n '' ']'
01:47:12 ++ '[' -n '' ']'
01:47:12 ++ hash -r
01:47:12 ++ '[' -n '' ']'
01:47:12 ++ unset VIRTUAL_ENV
01:47:12 ++ unset VIRTUAL_ENV_PROMPT
01:47:12 ++ '[' '!' nondestructive = nondestructive ']'
01:47:12 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:47:12 ++ export VIRTUAL_ENV
01:47:12 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:47:12 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:47:12 ++ export PATH
01:47:12 ++ '[' -n '' ']'
01:47:12 ++ '[' -z '' ']'
01:47:12 ++ _OLD_VIRTUAL_PS1=
01:47:12 ++ PS1='(.venv3) '
01:47:12 ++ export PS1
01:47:12 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:47:12 ++ export VIRTUAL_ENV_PROMPT
01:47:12 ++ hash -r
01:47:12 + omero admin stop
01:47:28 Waiting on shutdown. Use CTRL-C to exit
01:47:28 .+ sleep 5
01:47:44 + deactivate
01:47:44 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
01:47:44 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:47:44 + export PATH
01:47:44 + unset _OLD_VIRTUAL_PATH
01:47:44 + '[' -n '' ']'
01:47:44 + hash -r
01:47:44 + '[' -n '' ']'
01:47:44 + unset VIRTUAL_ENV
01:47:44 + unset VIRTUAL_ENV_PROMPT
01:47:44 + '[' '!' '' = nondestructive ']'
01:47:44 + unset -f deactivate
01:47:44 + rm -rf /home/omero/workspace/OMERO-server/.venv3
01:50:16 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3
01:50:37 + '[' false = true ']'
01:50:37 + echo 'Skipping PURGE_DATA:CleanDbAndRepo'
01:50:37 Skipping PURGE_DATA:CleanDbAndRepo
01:50:37 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.6-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.23.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.32.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties
01:50:43 Copied 1 artifact from "OMERO-build" build number 44
01:50:43 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 37
01:50:43 Copied 2 artifacts from "OMERO-build-build" build number 49
01:50:44 [OMERO-server] $ /bin/bash -xe /tmp/jenkins10605074940848712502.sh
01:50:44 + source /home/settings.env
01:50:44 ++ OMERO_DB_HOST=pg
01:50:44 ++ OMERO_DB_USER=postgres
01:50:44 ++ OMERO_DB_PASS=
01:50:44 ++ OMERO_ROOT_PASS=omero
01:50:44 ++ OMERO_DATA_DIR=/OMERO
01:50:44 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR
01:50:44 + OMERO_DB_NAME=OMERO-server
01:50:44 + OMERO_DATA_DIR=/home/omero/omero-server-data
01:50:44 + mkdir -p /home/omero/omero-server-data
01:50:44 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server
01:50:44 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:50:44 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
01:50:44 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:50:44 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip
01:50:44 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:50:44 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties
01:50:44 ++ ls OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:50:44 + ZIP=OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:50:44 + '[' '!' -z '' ']'
01:50:44 + DIST=OMERO.server-5.6.3-643-6f7718bbff-ice36-b44
01:50:44 + unzip OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:50:44 Archive: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/blitz/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/grid/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/profiles/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/error/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/grid/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/janelia/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/matplotlib/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/ncsa_paledit/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/seaborn/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/luts/wcif/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/analysis_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/annotation_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/export_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/figure_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/import_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/scripts/omero/util_scripts/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/server/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/share/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/share/licenses/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/misc/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__1/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__10/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__11/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__2/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__3/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__4/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__5/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__6/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__7/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__8/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3A__9/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3__4/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3__5/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3__6/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO3__7/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4.1__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4.2__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4.2__0/t/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4.3__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4.4__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO4__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.0__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.1__1/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.2__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.3__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__1/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__2/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__3/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/var/
01:50:44 creating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/var/tmp/
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/LICENSE.txt
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/backup.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/blitz/mail-senders.example
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/blitz/mail-server.example
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/build.properties
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/env.bat
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/env.sh
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/hibernate.properties
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/ice.config
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/logback-cli.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/logback-indexing-cli.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/logback-indexing.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/logback.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/mime.types
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/node1.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/node2.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/omero.properties
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/profiles/psql
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/rollover.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/Windows.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/error/maintainance.html
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/grid/README
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/grid/default.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/grid/templates.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/grid/windefault.xml
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/ice.config
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/internal.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/master.cfg
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/templates/robot.template
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/etc/testdropbox.config
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/history.rst
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/OMEZarrReader.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/accessors-smart.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/activation.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aggdesigner-algorithm.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aircompressor.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/antlr.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aopalliance.jar
01:50:44 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/apiguardian-api.jar
01:50:45 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/asm.jar
01:50:45 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/avatica-core.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/avatica-metrics.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aws-java-sdk-core.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aws-java-sdk-kms.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/aws-java-sdk-s3.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/base.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-anim.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-awt-util.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-bridge.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-codec.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-constants.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-css.jar
01:50:58 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-dom.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-ext.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-gvt.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-i18n.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-parser.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-script.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-shared-resources.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-svg-dom.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-svggen.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-transcoder.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-util.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/batik-xml.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/btm.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/calcite-core.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/calcite-linq4j.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/cdm-core.jar
01:50:59 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/lib/client/checker-qual.jar
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01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__0.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.3__1.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/psql-footer.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/psql-header.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/schema.sql
01:51:22 inflating: OMERO.server-5.6.3-643-6f7718bbff-ice36-b44/sql/psql/OMERO5.4__0/views.sql
01:51:22 + rm -f OMERO.server-5.6.3-643-6f7718bbff-ice36-b44.zip
01:51:22 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-643-6f7718bbff-ice36-b44 /home/omero/workspace/OMERO-server/OMERO.server
01:51:23 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate
01:51:23 ++ deactivate nondestructive
01:51:23 ++ '[' -n '' ']'
01:51:23 ++ '[' -n '' ']'
01:51:23 ++ hash -r
01:51:23 ++ '[' -n '' ']'
01:51:23 ++ unset VIRTUAL_ENV
01:51:23 ++ unset VIRTUAL_ENV_PROMPT
01:51:23 ++ '[' '!' nondestructive = nondestructive ']'
01:51:23 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3
01:51:23 ++ export VIRTUAL_ENV
01:51:23 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:51:23 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
01:51:23 ++ export PATH
01:51:23 ++ '[' -n '' ']'
01:51:23 ++ '[' -z '' ']'
01:51:23 ++ _OLD_VIRTUAL_PS1=
01:51:23 ++ PS1='(.venv3) '
01:51:23 ++ export PS1
01:51:23 ++ VIRTUAL_ENV_PROMPT='(.venv3) '
01:51:23 ++ export VIRTUAL_ENV_PROMPT
01:51:23 ++ hash -r
01:51:23 + pip install -U pip
01:51:24 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1)
01:51:24 Collecting pip
01:51:24 Using cached pip-26.2.1-py3-none-any.whl (1.8 MB)
01:51:24 Installing collected packages: pip
01:51:24 Attempting uninstall: pip
01:51:24 Found existing installation: pip 22.3.1
01:51:25 Uninstalling pip-22.3.1:
01:51:26 Successfully uninstalled pip-22.3.1
01:51:42 Successfully installed pip-26.2.1
01:51:42 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl
01:51:43 Collecting zeroc-ice==3.6.5
01:51:43 Downloading zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB)
01:51:46 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s 0:00:02
01:51:46 Installing collected packages: zeroc-ice
01:51:50 Successfully installed zeroc-ice-3.6.5
01:51:50 + pip install markdown
01:51:51 Collecting markdown
01:51:51 Using cached markdown-3.10.3-py3-none-any.whl.metadata (5.1 kB)
01:51:51 Using cached markdown-3.10.3-py3-none-any.whl (110 kB)
01:51:51 Installing collected packages: markdown
01:51:52 Successfully installed markdown-3.10.3
01:51:52 + pip install reportlab
01:51:53 Collecting reportlab
01:51:53 Using cached reportlab-5.0.0-py3-none-any.whl.metadata (1.6 kB)
01:51:53 Collecting pillow>=9.0.0 (from reportlab)
01:51:53 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.1 kB)
01:51:54 Collecting charset-normalizer (from reportlab)
01:51:54 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (41 kB)
01:51:54 Using cached reportlab-5.0.0-py3-none-any.whl (2.0 MB)
01:51:54 Using cached pillow-12.3.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.9 MB)
01:51:54 Using cached charset_normalizer-3.4.9-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (221 kB)
01:51:54 Installing collected packages: pillow, charset-normalizer, reportlab
01:52:02
01:52:02 Successfully installed charset-normalizer-3.4.9 pillow-12.3.0 reportlab-5.0.0
01:52:02 + pip install omego
01:52:03 Collecting omego
01:52:04 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB)
01:52:04 Collecting future (from omego)
01:52:04 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
01:52:04 Collecting yaclifw>=0.1.1 (from omego)
01:52:04 Using cached yaclifw-0.2.0-py3-none-any.whl
01:52:04 Collecting six (from yaclifw>=0.1.1->omego)
01:52:04 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
01:52:04 Using cached omego-0.8.0-py3-none-any.whl (41 kB)
01:52:04 Using cached future-1.0.0-py3-none-any.whl (491 kB)
01:52:04 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
01:52:04 Installing collected packages: six, future, yaclifw, omego
01:52:10
01:52:10 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0
01:52:11 + pip install tables
01:52:11 Collecting tables
01:52:11 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB)
01:52:12 Collecting numpy>=1.20.0 (from tables)
01:52:12 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB)
01:52:12 Collecting numexpr>=2.6.2 (from tables)
01:52:12 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB)
01:52:12 Collecting packaging (from tables)
01:52:12 Using cached packaging-26.3-py3-none-any.whl.metadata (3.5 kB)
01:52:12 Collecting py-cpuinfo (from tables)
01:52:12 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes)
01:52:13 Collecting blosc2>=2.3.0 (from tables)
01:52:13 Using cached blosc2-4.10.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (7.8 kB)
01:52:13 Collecting ndindex (from blosc2>=2.3.0->tables)
01:52:13 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB)
01:52:13 Collecting msgpack (from blosc2>=2.3.0->tables)
01:52:13 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:52:13 Collecting pydantic (from blosc2>=2.3.0->tables)
01:52:13 Using cached pydantic-2.13.4-py3-none-any.whl.metadata (109 kB)
01:52:13 Collecting httpx[http2] (from blosc2>=2.3.0->tables)
01:52:13 Using cached httpx-0.28.1-py3-none-any.whl.metadata (7.1 kB)
01:52:13 Collecting rich (from blosc2>=2.3.0->tables)
01:52:13 Using cached rich-15.0.0-py3-none-any.whl.metadata (18 kB)
01:52:14 Collecting threadpoolctl (from blosc2>=2.3.0->tables)
01:52:14 Using cached threadpoolctl-3.6.0-py3-none-any.whl.metadata (13 kB)
01:52:14 Collecting anyio (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached anyio-4.14.2-py3-none-any.whl.metadata (4.6 kB)
01:52:14 Collecting certifi (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached certifi-2026.7.22-py3-none-any.whl.metadata (2.5 kB)
01:52:14 Collecting httpcore==1.* (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached httpcore-1.0.9-py3-none-any.whl.metadata (21 kB)
01:52:14 Collecting idna (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached idna-3.18-py3-none-any.whl.metadata (6.1 kB)
01:52:14 Collecting h2<5,>=3 (from httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached h2-4.4.1-py3-none-any.whl.metadata (3.8 kB)
01:52:14 Collecting hyperframe<7,>=6.1 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:52:14 Using cached hyperframe-6.1.0-py3-none-any.whl.metadata (4.3 kB)
01:52:15 Collecting hpack<5,>=4.2 (from h2<5,>=3->httpx[http2]->blosc2>=2.3.0->tables)
01:52:15 Using cached hpack-4.2.0-py3-none-any.whl.metadata (3.3 kB)
01:52:15 Collecting h11>=0.16 (from httpcore==1.*->httpx[http2]->blosc2>=2.3.0->tables)
01:52:15 Using cached h11-0.16.0-py3-none-any.whl.metadata (8.3 kB)
01:52:15 Collecting typing_extensions>=4.5 (from anyio->httpx[http2]->blosc2>=2.3.0->tables)
01:52:15 Using cached typing_extensions-4.16.0-py3-none-any.whl.metadata (3.3 kB)
01:52:15 Collecting annotated-types>=0.6.0 (from pydantic->blosc2>=2.3.0->tables)
01:52:15 Using cached annotated_types-0.8.0-py3-none-any.whl.metadata (15 kB)
01:52:16 Collecting pydantic-core==2.46.4 (from pydantic->blosc2>=2.3.0->tables)
01:52:16 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB)
01:52:16 Collecting typing-inspection>=0.4.2 (from pydantic->blosc2>=2.3.0->tables)
01:52:16 Downloading typing_inspection-0.4.3-py3-none-any.whl.metadata (2.6 kB)
01:52:16 Collecting markdown-it-py>=2.2.0 (from rich->blosc2>=2.3.0->tables)
01:52:16 Using cached markdown_it_py-4.2.0-py3-none-any.whl.metadata (7.4 kB)
01:52:16 Collecting pygments<3.0.0,>=2.13.0 (from rich->blosc2>=2.3.0->tables)
01:52:16 Using cached pygments-2.20.0-py3-none-any.whl.metadata (2.5 kB)
01:52:17 Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->blosc2>=2.3.0->tables)
01:52:17 Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
01:52:17 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB)
01:52:17 Using cached blosc2-4.10.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (6.5 MB)
01:52:17 Using cached numexpr-2.14.2-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (443 kB)
01:52:17 Using cached numpy-2.4.6-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB)
01:52:17 Using cached httpx-0.28.1-py3-none-any.whl (73 kB)
01:52:17 Using cached h2-4.4.1-py3-none-any.whl (62 kB)
01:52:17 Using cached hpack-4.2.0-py3-none-any.whl (34 kB)
01:52:17 Using cached httpcore-1.0.9-py3-none-any.whl (78 kB)
01:52:17 Using cached hyperframe-6.1.0-py3-none-any.whl (13 kB)
01:52:17 Using cached h11-0.16.0-py3-none-any.whl (37 kB)
01:52:17 Using cached anyio-4.14.2-py3-none-any.whl (125 kB)
01:52:17 Using cached idna-3.18-py3-none-any.whl (65 kB)
01:52:17 Using cached typing_extensions-4.16.0-py3-none-any.whl (45 kB)
01:52:17 Using cached certifi-2026.7.22-py3-none-any.whl (136 kB)
01:52:17 Using cached msgpack-1.2.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (423 kB)
01:52:17 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB)
01:52:17 Using cached packaging-26.3-py3-none-any.whl (129 kB)
01:52:17 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB)
01:52:17 Using cached pydantic-2.13.4-py3-none-any.whl (472 kB)
01:52:17 Using cached pydantic_core-2.46.4-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:52:17 Using cached annotated_types-0.8.0-py3-none-any.whl (13 kB)
01:52:17 Downloading typing_inspection-0.4.3-py3-none-any.whl (14 kB)
01:52:17 Using cached rich-15.0.0-py3-none-any.whl (310 kB)
01:52:17 Using cached pygments-2.20.0-py3-none-any.whl (1.2 MB)
01:52:17 Using cached markdown_it_py-4.2.0-py3-none-any.whl (91 kB)
01:52:17 Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
01:52:17 Using cached threadpoolctl-3.6.0-py3-none-any.whl (18 kB)
01:52:18 Installing collected packages: py-cpuinfo, typing_extensions, threadpoolctl, pygments, packaging, numpy, ndindex, msgpack, mdurl, idna, hyperframe, hpack, h11, certifi, annotated-types, typing-inspection, pydantic-core, numexpr, markdown-it-py, httpcore, h2, anyio, rich, pydantic, httpx, blosc2, tables
01:53:05
01:53:05 Successfully installed annotated-types-0.8.0 anyio-4.14.2 blosc2-4.10.1 certifi-2026.7.22 h11-0.16.0 h2-4.4.1 hpack-4.2.0 httpcore-1.0.9 httpx-0.28.1 hyperframe-6.1.0 idna-3.18 markdown-it-py-4.2.0 mdurl-0.1.2 msgpack-1.2.1 ndindex-1.10.1 numexpr-2.14.2 numpy-2.4.6 packaging-26.3 py-cpuinfo-9.0.0 pydantic-2.13.4 pydantic-core-2.46.4 pygments-2.20.0 rich-15.0.0 tables-3.11.1 threadpoolctl-3.6.0 typing-inspection-0.4.3 typing_extensions-4.16.0
01:53:05 + pip install jinja2
01:53:07 Collecting jinja2
01:53:07 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB)
01:53:07 Collecting MarkupSafe>=2.0 (from jinja2)
01:53:07 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB)
01:53:07 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB)
01:53:07 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB)
01:53:07 Installing collected packages: MarkupSafe, jinja2
01:53:08
01:53:08 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6
01:53:08 + pip install omero-py
01:53:09 Collecting omero-py
01:53:09 Using cached omero_py-5.23.0-py3-none-any.whl.metadata (6.5 kB)
01:53:09 Collecting appdirs (from omero-py)
01:53:09 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB)
01:53:09 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0)
01:53:09 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.6)
01:53:09 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.3.0)
01:53:09 Collecting PyYAML (from omero-py)
01:53:09 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB)
01:53:09 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5)
01:53:09 Collecting requests (from omero-py)
01:53:09 Using cached requests-2.34.2-py3-none-any.whl.metadata (4.8 kB)
01:53:09 Collecting portalocker (from omero-py)
01:53:09 Using cached portalocker-4.1.0-py3-none-any.whl.metadata (11 kB)
01:53:09 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.9)
01:53:09 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.18)
01:53:10 Collecting urllib3<3,>=1.26 (from requests->omero-py)
01:53:10 Using cached urllib3-2.7.0-py3-none-any.whl.metadata (6.9 kB)
01:53:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.7.22)
01:53:10 Using cached omero_py-5.23.0-py3-none-any.whl (2.8 MB)
01:53:10 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB)
01:53:10 Using cached portalocker-4.1.0-py3-none-any.whl (65 kB)
01:53:10 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB)
01:53:10 Using cached requests-2.34.2-py3-none-any.whl (73 kB)
01:53:10 Using cached urllib3-2.7.0-py3-none-any.whl (131 kB)
01:53:10 Installing collected packages: appdirs, urllib3, PyYAML, portalocker, requests, omero-py
01:53:28
01:53:28 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.23.0 portalocker-4.1.0 requests-2.34.2 urllib3-2.7.0
01:53:28 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata
01:53:29 Collecting omero-metadata
01:53:29 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-r99oqjmb/omero-metadata_942566c63cb44196874a4987b2e83dcd
01:53:29 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-r99oqjmb/omero-metadata_942566c63cb44196874a4987b2e83dcd
01:53:30 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit ce54363de5a6c08062b7d8680a27af6b66579f7e
01:53:30 Installing build dependencies: started
01:53:32 Installing build dependencies: finished with status 'done'
01:53:32 Getting requirements to build wheel: started
01:53:32 Getting requirements to build wheel: finished with status 'done'
01:53:32 Preparing metadata (pyproject.toml): started
01:53:32 Preparing metadata (pyproject.toml): finished with status 'done'
01:53:32 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.23.0)
01:53:32 Collecting pandas<3,>=2 (from omero-metadata)
01:53:32 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB)
01:53:33 Requirement already satisfied: numpy>=1.23.2 in ./.venv3/lib64/python3.11/site-packages (from pandas<3,>=2->omero-metadata) (2.4.6)
01:53:33 Collecting python-dateutil>=2.8.2 (from pandas<3,>=2->omero-metadata)
01:53:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
01:53:33 Collecting pytz>=2020.1 (from pandas<3,>=2->omero-metadata)
01:53:33 Using cached pytz-2026.3.post1-py2.py3-none-any.whl.metadata (22 kB)
01:53:33 Collecting tzdata>=2022.7 (from pandas<3,>=2->omero-metadata)
01:53:33 Using cached tzdata-2026.3-py2.py3-none-any.whl.metadata (1.4 kB)
01:53:33 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4)
01:53:33 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0)
01:53:33 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.3.0)
01:53:33 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (6.0.3)
01:53:33 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5)
01:53:33 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.34.2)
01:53:33 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (4.1.0)
01:53:33 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas<3,>=2->omero-metadata) (1.17.0)
01:53:33 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.9)
01:53:33 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.18)
01:53:33 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.7.0)
01:53:33 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.7.22)
01:53:33 Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB)
01:53:33 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
01:53:33 Using cached pytz-2026.3.post1-py2.py3-none-any.whl (508 kB)
01:53:33 Using cached tzdata-2026.3-py2.py3-none-any.whl (348 kB)
01:53:33 Building wheels for collected packages: omero-metadata
01:53:33 Building wheel for omero-metadata (pyproject.toml): started
01:53:34 Building wheel for omero-metadata (pyproject.toml): finished with status 'done'
01:53:34 Created wheel for omero-metadata: filename=omero_metadata-0.14.1.dev0-py3-none-any.whl size=39360 sha256=0c2ba27b6a97e73811e50af444698882c80fe9979c14cff78b40281f1dc96470
01:53:34 Stored in directory: /tmp/pip-ephem-wheel-cache-6jwghopq/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b
01:53:34 Successfully built omero-metadata
01:53:34 Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata
01:54:25
01:54:25 Successfully installed omero-metadata-0.14.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2026.3.post1 tzdata-2026.3
01:54:25 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render
01:54:26 Collecting omero-cli-render
01:54:26 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-qfze1_nn/omero-cli-render_377ea3302d074bd09a6e77eeaf8e7fea
01:54:26 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-qfze1_nn/omero-cli-render_377ea3302d074bd09a6e77eeaf8e7fea
01:54:27 Running command git checkout -b merge_ci --track origin/merge_ci
01:54:27 Switched to a new branch 'merge_ci'
01:54:27 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:27 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit eca8760c7ed3b6e6b786f951eed25910cbb10299
01:54:27 Installing build dependencies: started
01:54:28 Installing build dependencies: finished with status 'done'
01:54:28 Getting requirements to build wheel: started
01:54:29 Getting requirements to build wheel: finished with status 'done'
01:54:29 Preparing metadata (pyproject.toml): started
01:54:29 Preparing metadata (pyproject.toml): finished with status 'done'
01:54:29 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3)
01:54:29 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.23.0)
01:54:29 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4)
01:54:29 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0)
01:54:29 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.6)
01:54:29 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.3.0)
01:54:29 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5)
01:54:29 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.34.2)
01:54:29 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (4.1.0)
01:54:29 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.9)
01:54:29 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.18)
01:54:29 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.7.0)
01:54:29 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.7.22)
01:54:29 Building wheels for collected packages: omero-cli-render
01:54:29 Building wheel for omero-cli-render (pyproject.toml): started
01:54:29 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done'
01:54:29 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19841 sha256=07ef982c02f88d8a5730d72af9be7b0c5d120d5b67ea0568c9bf44fdf0486ce6
01:54:29 Stored in directory: /tmp/pip-ephem-wheel-cache-4hp1c92n/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee
01:54:29 Successfully built omero-cli-render
01:54:29 Installing collected packages: omero-cli-render
01:54:30 Successfully installed omero-cli-render-0.8.2.dev0
01:54:30 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate
01:54:31 Collecting omero-cli-duplicate
01:54:31 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-7yleg_ak/omero-cli-duplicate_2792d3b8a4b64004a2690f840bb12203
01:54:31 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-7yleg_ak/omero-cli-duplicate_2792d3b8a4b64004a2690f840bb12203
01:54:32 Running command git checkout -b merge_ci --track origin/merge_ci
01:54:32 Switched to a new branch 'merge_ci'
01:54:32 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:32 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 882a5ab2e700b00c53cebc2affc5e3ce56c633be
01:54:32 Installing build dependencies: started
01:54:33 Installing build dependencies: finished with status 'done'
01:54:33 Getting requirements to build wheel: started
01:54:34 Getting requirements to build wheel: finished with status 'done'
01:54:34 Preparing metadata (pyproject.toml): started
01:54:34 Preparing metadata (pyproject.toml): finished with status 'done'
01:54:34 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.23.0)
01:54:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4)
01:54:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0)
01:54:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.6)
01:54:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.3.0)
01:54:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3)
01:54:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5)
01:54:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.34.2)
01:54:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (4.1.0)
01:54:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.9)
01:54:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.18)
01:54:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.7.0)
01:54:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.7.22)
01:54:34 Building wheels for collected packages: omero-cli-duplicate
01:54:34 Building wheel for omero-cli-duplicate (pyproject.toml): started
01:54:34 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done'
01:54:34 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11540 sha256=9ab2e1fce4f6b472edd108d61a7d1bdcf7340ec6825718d9f56afa4ceab500bc
01:54:34 Stored in directory: /tmp/pip-ephem-wheel-cache-9esakdek/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46
01:54:34 Successfully built omero-cli-duplicate
01:54:34 Installing collected packages: omero-cli-duplicate
01:54:34 Successfully installed omero-cli-duplicate-0.4.1.dev0
01:54:34 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr
01:54:35 Collecting omero-cli-zarr
01:54:35 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-zrokrn88/omero-cli-zarr_4bb9526508da4f38938a3ce78357c549
01:54:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-zrokrn88/omero-cli-zarr_4bb9526508da4f38938a3ce78357c549
01:54:36 Running command git checkout -b merge_ci --track origin/merge_ci
01:54:37 Switched to a new branch 'merge_ci'
01:54:37 branch 'merge_ci' set up to track 'origin/merge_ci'.
01:54:37 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit 8bd52a91a92d1c71a23792dccda3c8dbe0fcf0fb
01:54:37 Installing build dependencies: started
01:54:38 Installing build dependencies: finished with status 'done'
01:54:38 Getting requirements to build wheel: started
01:54:38 Getting requirements to build wheel: finished with status 'done'
01:54:38 Installing backend dependencies: started
01:54:40 Installing backend dependencies: finished with status 'done'
01:54:40 Preparing metadata (pyproject.toml): started
01:54:40 Preparing metadata (pyproject.toml): finished with status 'done'
01:54:40 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.23.0)
01:54:40 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr)
01:54:40 Using cached ome_zarr-0.18.0-py3-none-any.whl.metadata (2.9 kB)
01:54:40 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.6)
01:54:40 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:41 Using cached dask-2026.7.1-py3-none-any.whl.metadata (3.8 kB)
01:54:41 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:41 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB)
01:54:41 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:41 Using cached fsspec-2026.7.0-py3-none-any.whl.metadata (10 kB)
01:54:41 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.3 kB)
01:54:42 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.34.2)
01:54:42 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB)
01:54:42 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB)
01:54:42 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes)
01:54:42 Collecting ome-zarr-models>=1.6 (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached ome_zarr_models-1.7-py3-none-any.whl.metadata (3.0 kB)
01:54:42 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB)
01:54:42 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached click-8.4.2-py3-none-any.whl.metadata (2.6 kB)
01:54:42 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB)
01:54:42 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.3)
01:54:42 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB)
01:54:42 Requirement already satisfied: pyyaml>=5.4.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3)
01:54:42 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:42 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB)
01:54:42 Collecting s3fs>=2026.6.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:43 Using cached s3fs-2026.7.0-py3-none-any.whl.metadata (1.2 kB)
01:54:43 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:43 Using cached zipp-4.1.0-py3-none-any.whl.metadata (3.6 kB)
01:54:43 Collecting pydantic-zarr>=0.8.2 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:43 Using cached pydantic_zarr-0.9.2-py3-none-any.whl.metadata (4.0 kB)
01:54:43 Collecting pydantic<2.13,>=2.11.5 (from ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:43 Using cached pydantic-2.12.5-py3-none-any.whl.metadata (90 kB)
01:54:43 Requirement already satisfied: annotated-types>=0.6.0 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.8.0)
01:54:44 Collecting pydantic-core==2.41.5 (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.3 kB)
01:54:44 Requirement already satisfied: typing-extensions>=4.14.1 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (4.16.0)
01:54:44 Requirement already satisfied: typing-inspection>=0.4.2 in ./.venv3/lib64/python3.11/site-packages (from pydantic<2.13,>=2.11.5->ome-zarr-models>=1.6->ome-zarr>=0.13.0->omero-cli-zarr) (0.4.3)
01:54:44 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4)
01:54:44 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0)
01:54:44 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.3.0)
01:54:44 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5)
01:54:44 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (4.1.0)
01:54:44 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB)
01:54:44 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached aiobotocore-3.9.0-py3-none-any.whl.metadata (30 kB)
01:54:44 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB)
01:54:44 Collecting botocore<1.43.57,>=1.43.3 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached botocore-1.43.56-py3-none-any.whl.metadata (5.6 kB)
01:54:44 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:44 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB)
01:54:45 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:45 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB)
01:54:45 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0)
01:54:45 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:45 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB)
01:54:45 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:45 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl.metadata (5.9 kB)
01:54:45 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:45 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB)
01:54:45 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:45 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB)
01:54:46 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:46 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB)
01:54:46 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:46 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (16 kB)
01:54:46 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:46 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (103 kB)
01:54:46 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.43.57,>=1.43.3->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.7.0)
01:54:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>=2026.6.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0)
01:54:46 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.18)
01:54:46 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:46 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB)
01:54:46 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:46 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB)
01:54:46 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached imageio-2.37.4-py3-none-any.whl.metadata (9.6 kB)
01:54:47 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB)
01:54:47 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB)
01:54:47 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB)
01:54:47 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB)
01:54:47 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr)
01:54:47 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB)
01:54:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.9)
01:54:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.7.22)
01:54:47 Using cached ome_zarr-0.18.0-py3-none-any.whl (57 kB)
01:54:47 Using cached dask-2026.7.1-py3-none-any.whl (1.5 MB)
01:54:47 Using cached click-8.4.2-py3-none-any.whl (119 kB)
01:54:47 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB)
01:54:47 Using cached fsspec-2026.7.0-py3-none-any.whl (206 kB)
01:54:47 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB)
01:54:47 Using cached ome_zarr_models-1.7-py3-none-any.whl (64 kB)
01:54:47 Using cached pydantic-2.12.5-py3-none-any.whl (463 kB)
01:54:47 Using cached pydantic_core-2.41.5-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (2.1 MB)
01:54:47 Using cached partd-1.4.2-py3-none-any.whl (18 kB)
01:54:47 Using cached pydantic_zarr-0.9.2-py3-none-any.whl (52 kB)
01:54:47 Using cached s3fs-2026.7.0-py3-none-any.whl (32 kB)
01:54:47 Using cached aiobotocore-3.9.0-py3-none-any.whl (100 kB)
01:54:48 Using cached aiohttp-3.14.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB)
01:54:48 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB)
01:54:48 Using cached botocore-1.43.56-py3-none-any.whl (15.4 MB)
01:54:48 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB)
01:54:48 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB)
01:54:48 Using cached wrapt-2.3.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (161 kB)
01:54:48 Using cached yarl-1.24.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (111 kB)
01:54:48 Using cached aiohappyeyeballs-2.7.1-py3-none-any.whl (15 kB)
01:54:48 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB)
01:54:48 Using cached attrs-26.1.0-py3-none-any.whl (67 kB)
01:54:48 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB)
01:54:48 Using cached propcache-0.5.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (58 kB)
01:54:48 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB)
01:54:48 Using cached imageio-2.37.4-py3-none-any.whl (318 kB)
01:54:48 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB)
01:54:48 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB)
01:54:48 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB)
01:54:48 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB)
01:54:48 Using cached toolz-1.1.0-py3-none-any.whl (58 kB)
01:54:48 Using cached zarr-3.1.6-py3-none-any.whl (295 kB)
01:54:48 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB)
01:54:48 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB)
01:54:48 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB)
01:54:48 Using cached zipp-4.1.0-py3-none-any.whl (10 kB)
01:54:48 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB)
01:54:48 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB)
01:54:48 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB)
01:54:48 Building wheels for collected packages: omero-cli-zarr
01:54:48 Building wheel for omero-cli-zarr (pyproject.toml): started
01:54:49 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done'
01:54:49 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev168+g8bd52a9-py3-none-any.whl size=38401 sha256=9ef11cbad9ecb2a617605cdd9ab493e5e389f5e96e19e4771e5e526390f57e80
01:54:49 Stored in directory: /tmp/pip-ephem-wheel-cache-s_7v60to/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529
01:54:49 Successfully built omero-cli-zarr
01:54:49 Installing collected packages: rangehttpserver, zipp, wrapt, toolz, tifffile, scipy, pydantic-core, propcache, numcodecs, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, zarr, yarl, scikit-image, pydantic, partd, importlib_metadata, Deprecated, botocore, aiosignal, pydantic-zarr, dask, aiohttp, ome-zarr-models, aiobotocore, s3fs, ome-zarr, omero-cli-zarr
01:55:24 Attempting uninstall: pydantic-core
01:55:24 Found existing installation: pydantic_core 2.46.4
01:55:24 Uninstalling pydantic_core-2.46.4:
01:55:24 Successfully uninstalled pydantic_core-2.46.4
01:56:00 Attempting uninstall: pydantic
01:56:00 Found existing installation: pydantic 2.13.4
01:56:00 Uninstalling pydantic-2.13.4:
01:56:00 Successfully uninstalled pydantic-2.13.4
01:56:41
01:56:41 Successfully installed Deprecated-1.3.1 aiobotocore-3.9.0 aiohappyeyeballs-2.7.1 aiohttp-3.14.3 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.43.56 click-8.4.2 cloudpickle-3.1.2 dask-2026.7.1 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.7.0 google-crc32c-1.8.0 imageio-2.37.4 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.18.0 ome-zarr-models-1.7 omero-cli-zarr-0.5.5.dev168+g8bd52a9 partd-1.4.2 propcache-0.5.2 pydantic-2.12.5 pydantic-core-2.41.5 pydantic-zarr-0.9.2 rangehttpserver-1.4.0 s3fs-2026.7.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 wrapt-2.3.0 yarl-1.24.5 zarr-3.1.6 zipp-4.1.0
01:56:41 + pip install omero-certificates
01:56:43 Collecting omero-certificates
01:56:43 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB)
01:56:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.23.0)
01:56:43 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4)
01:56:43 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0)
01:56:43 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.6)
01:56:43 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.3.0)
01:56:43 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3)
01:56:43 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5)
01:56:43 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.34.2)
01:56:43 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (4.1.0)
01:56:43 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.9)
01:56:43 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.18)
01:56:43 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.7.0)
01:56:43 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.7.22)
01:56:43 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB)
01:56:43 Installing collected packages: omero-certificates
01:56:43 Successfully installed omero-certificates-0.4.0
01:56:44 + for x in *.tar.gz
01:56:44 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz
01:56:44 Processing ./omero_dropbox-5.7.1.dev0.tar.gz
01:56:44 Installing build dependencies: started
01:56:46 Installing build dependencies: finished with status 'done'
01:56:46 Getting requirements to build wheel: started
01:56:46 Getting requirements to build wheel: finished with status 'done'
01:56:46 Preparing metadata (pyproject.toml): started
01:56:46 Preparing metadata (pyproject.toml): finished with status 'done'
01:56:46 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.23.0)
01:56:46 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4)
01:56:46 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0)
01:56:46 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.6)
01:56:46 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.3.0)
01:56:46 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3)
01:56:46 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5)
01:56:46 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.34.2)
01:56:46 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (4.1.0)
01:56:46 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.9)
01:56:46 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.18)
01:56:46 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.7.0)
01:56:46 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.7.22)
01:56:46 Building wheels for collected packages: omero-dropbox
01:56:46 Building wheel for omero-dropbox (pyproject.toml): started
01:56:47 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done'
01:56:47 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49155 sha256=d10b6153998916103c75cd078d35d4244f33761145f3661b721b9d3e8b4af77b
01:56:47 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92
01:56:47 Successfully built omero-dropbox
01:56:47 Installing collected packages: omero-dropbox
01:56:48 Successfully installed omero-dropbox-5.7.1.dev0
01:56:48 + for x in *.tar.gz
01:56:48 + pip install -U omero_marshal-0.9.2.dev0.tar.gz
01:56:48 Processing ./omero_marshal-0.9.2.dev0.tar.gz
01:56:49 Installing build dependencies: started
01:56:50 Installing build dependencies: finished with status 'done'
01:56:50 Getting requirements to build wheel: started
01:56:50 Getting requirements to build wheel: finished with status 'done'
01:56:50 Preparing metadata (pyproject.toml): started
01:56:51 Preparing metadata (pyproject.toml): finished with status 'done'
01:56:51 Building wheels for collected packages: omero_marshal
01:56:51 Building wheel for omero_marshal (pyproject.toml): started
01:56:51 Building wheel for omero_marshal (pyproject.toml): finished with status 'done'
01:56:51 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88121 sha256=8a55fd9d53e0ccfd077dc2324f27364c6d7e25f27bfeda9e34beea80c4133159
01:56:51 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230
01:56:51 Successfully built omero_marshal
01:56:51 Installing collected packages: omero_marshal
01:56:54 Successfully installed omero_marshal-0.9.2.dev0
01:56:54 + for x in *.tar.gz
01:56:54 + pip install -U omero_py-5.23.1.dev0.tar.gz
01:56:55 Processing ./omero_py-5.23.1.dev0.tar.gz
01:56:55 Installing build dependencies: started
01:57:10 Installing build dependencies: finished with status 'done'
01:57:10 Getting requirements to build wheel: started
01:57:10 Getting requirements to build wheel: finished with status 'done'
01:57:10 Preparing metadata (pyproject.toml): started
01:57:10 Preparing metadata (pyproject.toml): finished with status 'done'
01:57:10 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.4.4)
01:57:10 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (1.0.0)
01:57:10 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.4.6)
01:57:10 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (12.3.0)
01:57:10 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (6.0.3)
01:57:10 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (3.6.5)
01:57:10 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (2.34.2)
01:57:10 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.23.1.dev0) (4.1.0)
01:57:10 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.4.9)
01:57:10 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (3.18)
01:57:10 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2.7.0)
01:57:10 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.23.1.dev0) (2026.7.22)
01:57:10 Building wheels for collected packages: omero-py
01:57:10 Building wheel for omero-py (pyproject.toml): started
01:57:11 Building wheel for omero-py (pyproject.toml): finished with status 'done'
01:57:11 Created wheel for omero-py: filename=omero_py-5.23.1.dev0-py3-none-any.whl size=2786708 sha256=dcd05e7ca69f2886b871de900a84b1ff33e11a9019b57afecec17273bce6dfda
01:57:11 Stored in directory: /home/omero/.cache/pip/wheels/99/0a/38/75d301c3c2feff37b61c572a590c9d07ab2e52df205857b74d
01:57:11 Successfully built omero-py
01:57:12 Installing collected packages: omero-py
01:57:12 Attempting uninstall: omero-py
01:57:12 Found existing installation: omero-py 5.23.0
01:57:12 Uninstalling omero-py-5.23.0:
01:57:27 Successfully uninstalled omero-py-5.23.0
01:57:43 Successfully installed omero-py-5.23.1.dev0
01:57:43 + for x in *.tar.gz
01:57:43 + pip install -U omero_scripts-5.10.1.dev0.tar.gz
01:57:44 Processing ./omero_scripts-5.10.1.dev0.tar.gz
01:57:44 Installing build dependencies: started
01:57:46 Installing build dependencies: finished with status 'done'
01:57:46 Getting requirements to build wheel: started
01:57:46 Getting requirements to build wheel: finished with status 'done'
01:57:46 Preparing metadata (pyproject.toml): started
01:57:46 Preparing metadata (pyproject.toml): finished with status 'done'
01:57:46 Building wheels for collected packages: omero-scripts
01:57:46 Building wheel for omero-scripts (pyproject.toml): started
01:57:47 Building wheel for omero-scripts (pyproject.toml): finished with status 'done'
01:57:47 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137217 sha256=b2365521efd6410cdd1cf5f6fc423fa6d9f9bdfdfed1d1325250678f8caeb8a1
01:57:47 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e
01:57:47 Successfully built omero-scripts
01:57:47 Installing collected packages: omero-scripts
01:57:48 Successfully installed omero-scripts-5.10.1.dev0
01:57:48 + for x in *.tar.gz
01:57:48 + pip install -U omero_web-5.32.1.dev0.tar.gz
01:57:49 Processing ./omero_web-5.32.1.dev0.tar.gz
01:57:50 Installing build dependencies: started
01:57:51 Installing build dependencies: finished with status 'done'
01:57:51 Getting requirements to build wheel: started
01:57:51 Getting requirements to build wheel: finished with status 'done'
01:57:51 Preparing metadata (pyproject.toml): started
01:57:52 Preparing metadata (pyproject.toml): finished with status 'done'
01:57:52 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (5.23.1.dev0)
01:57:52 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.32.1.dev0)
01:57:52 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB)
01:57:52 Collecting Django<5.3,>=5.2.9 (from omero-web==5.32.1.dev0)
01:57:52 Using cached django-5.2.17-py3-none-any.whl.metadata (4.1 kB)
01:57:52 Collecting django-pipeline>=4.1.0 (from omero-web==5.32.1.dev0)
01:57:52 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB)
01:57:52 Collecting django-cors-headers==3.7.0 (from omero-web==5.32.1.dev0)
01:57:52 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB)
01:57:52 Collecting whitenoise>=5.3.0 (from omero-web==5.32.1.dev0)
01:57:53 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB)
01:57:53 Collecting gunicorn>=19.3 (from omero-web==5.32.1.dev0)
01:57:53 Using cached gunicorn-26.0.0-py3-none-any.whl.metadata (5.4 kB)
01:57:53 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (0.9.2.dev0)
01:57:53 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (12.3.0)
01:57:53 Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (2026.3.post1)
01:57:53 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (4.1.0)
01:57:53 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.32.1.dev0) (26.3)
01:57:53 Collecting importlib-resources (from omero-web==5.32.1.dev0)
01:57:53 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB)
01:57:53 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:57:53 Using cached asgiref-3.12.1-py3-none-any.whl.metadata (9.4 kB)
01:57:53 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.32.1.dev0)
01:57:53 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB)
01:57:53 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0) (65.5.1)
01:57:53 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.32.1.dev0)
01:57:53 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB)
01:57:53 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.4.4)
01:57:53 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (1.0.0)
01:57:53 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.4.6)
01:57:53 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (6.0.3)
01:57:53 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.6.5)
01:57:53 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.34.2)
01:57:53 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.4.9)
01:57:53 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (3.18)
01:57:53 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2.7.0)
01:57:53 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.32.1.dev0) (2026.7.22)
01:57:53 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB)
01:57:53 Using cached django-5.2.17-py3-none-any.whl (8.3 MB)
01:57:53 Using cached asgiref-3.12.1-py3-none-any.whl (25 kB)
01:57:53 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB)
01:57:53 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB)
01:57:53 Using cached gunicorn-26.0.0-py3-none-any.whl (212 kB)
01:57:53 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB)
01:57:53 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB)
01:57:53 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB)
01:57:54 Using cached wheel-0.47.0-py3-none-any.whl (32 kB)
01:57:54 Building wheels for collected packages: omero-web
01:57:54 Building wheel for omero-web (pyproject.toml): started
01:57:55 Building wheel for omero-web (pyproject.toml): finished with status 'done'
01:57:55 Created wheel for omero-web: filename=omero_web-5.32.1.dev0-py3-none-any.whl size=2820231 sha256=b0e6a9ca97b52cd9ddf74b94fed84ca0e2b8c1918dea28828b657e3415fcbfd8
01:57:55 Stored in directory: /home/omero/.cache/pip/wheels/e6/f6/6f/ec36dda9edad720aabd7330edafa8a6a62d6ebfa4c7467248f
01:57:55 Successfully built omero-web
01:57:55 Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web
01:59:03
01:59:03 Successfully installed Django-5.2.17 asgiref-3.12.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-26.0.0 importlib-resources-7.1.0 omero-web-5.32.1.dev0 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0
01:59:03 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:59:03 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file.
01:59:03 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled.
01:59:03 --2026-08-11 01:59:03-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py
01:59:03 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.109.133, 185.199.110.133, ...
01:59:03 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected.
01:59:03 HTTP request sent, awaiting response... 200 OK
01:59:03 Length: 139337 (136K) [text/plain]
01:59:03 Saving to: ‘Figure_To_Pdf.py’
01:59:03
01:59:03 0K .......... .......... .......... .......... .......... 36% 2.89M 0s
01:59:03 50K .......... .......... .......... .......... .......... 73% 10.1M 0s
01:59:03 100K .......... .......... .......... ...... 100% 3.67M=0.03s
01:59:03
01:59:03 2026-08-11 01:59:03 (4.24 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337]
01:59:03
01:59:03 + chmod 755 Figure_To_Pdf.py
01:59:03 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts
01:59:03 + omero config set omero.db.name OMERO-server
01:59:11 + omero config set omero.db.host pg
01:59:16 + omero config set omero.db.user postgres
01:59:21 + omero config set omero.data.dir /home/omero/omero-server-data
01:59:27 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time%
01:59:32 + omero config set omero.db.poolsize 25
01:59:37 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts
01:59:43 + omero config set omero.security.trustStorePassword changeit
01:59:48 + omero config set omero.mail.config true
01:59:53 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0
01:59:59 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED'
02:00:04 + omero certificates
02:00:09 OpenSSL 3.5.5 27 Jan 2026 (Library: OpenSSL 3.5.5 27 Jan 2026)
02:00:09 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12
02:00:09 + '[' false = true ']'
02:00:09 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade'
02:00:09 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade
02:00:09 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG dbcommand => upgrade
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG dbhost => localhost
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG dbname => OMERO-server
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG dbpass => omero
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG dbuser => omero
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG rootpass => omero
02:00:10 2026-08-11 02:00:10,101 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server
02:00:10 2026-08-11 02:00:10,102 [omego.extern] INFO Executing : omero version
02:00:14 OMERO.py version:
02:00:14 OMERO.server version:
02:00:14 5.6.3-643-6f7718bbff-ice36-b44
02:00:14 5.23.1.dev0
02:00:15 2026-08-11 02:00:15,349 [omego.extern] INFO Completed [5.247 s]
02:00:15 2026-08-11 02:00:15,349 [omego.extern] DEBUG Using omero CLI from omero
02:00:15 2026-08-11 02:00:15,349 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ...
02:00:15 2026-08-11 02:00:15,349 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:00:15 2026-08-11 02:00:15,350 [omego.extern] INFO Executing : omero config get --show-password
02:00:20 2026-08-11 02:00:20,752 [omego.extern] INFO Completed [5.402 s]
02:00:20 2026-08-11 02:00:20,752 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:00:20 2026-08-11 02:00:20,752 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version
02:00:20 2026-08-11 02:00:20,758 [omego.extern] INFO Completed [0.006 s]
02:00:20 2026-08-11 02:00:20,759 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.14\n'
02:00:20 2026-08-11 02:00:20,759 [ omego.db] INFO psql version: psql (PostgreSQL) 16.14
02:00:20
02:00:20 2026-08-11 02:00:20,759 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:00:20 2026-08-11 02:00:20,759 [omego.extern] INFO Executing : omero config get --show-password
02:00:26 2026-08-11 02:00:26,165 [omego.extern] INFO Completed [5.406 s]
02:00:26 2026-08-11 02:00:26,165 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:00:26 2026-08-11 02:00:26,165 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo
02:00:26 2026-08-11 02:00:26,181 [omego.extern] INFO Completed [0.016 s]
02:00:26 2026-08-11 02:00:26,181 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.5") at port "5432".\n'
02:00:26 2026-08-11 02:00:26,181 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:00:26 2026-08-11 02:00:26,181 [omego.extern] INFO Running [current environment]: omero config get --show-password
02:00:26 2026-08-11 02:00:26,181 [omego.extern] INFO Executing : omero config get --show-password
02:00:31 2026-08-11 02:00:31,291 [omego.extern] INFO Completed [5.110 s]
02:00:31 2026-08-11 02:00:31,292 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero
02:00:31 2026-08-11 02:00:31,292 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1
02:00:31 2026-08-11 02:00:31,328 [omego.extern] INFO Completed [0.036 s]
02:00:31 2026-08-11 02:00:31,328 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n'
02:00:31 2026-08-11 02:00:31,328 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0')
02:00:31 2026-08-11 02:00:31,413 [ omego.db] INFO Database is already at OMERO5.4__0
02:00:31 + export LANG=en_US.UTF-8
02:00:31 + LANG=en_US.UTF-8
02:00:31 + export LANGUAGE=en_US:en
02:00:31 + LANGUAGE=en_US:en
02:00:31 + export LC_ALL=en_US.UTF-8
02:00:31 + LC_ALL=en_US.UTF-8
02:00:31 + BUILD_ID=DONT_KILL_ME
02:00:31 + omero admin start
02:00:42 No descriptor given. Using etc/grid/default.xml
02:00:57 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master
02:00:57 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log
02:00:57 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry
02:00:57 Waiting on startup. Use CTRL-C to exit
02:00:57 + omero admin waitup
02:01:02 Waiting on startup. Use CTRL-C to exit
02:01:03 + omero admin diagnostics
02:01:12
02:01:12 ================================================================================
02:01:12 OMERO Diagnostics (admin)
02:01:12 ================================================================================
02:01:12
02:01:12 Commands: java -version 21.0.12 (/usr/bin/java)
02:01:12 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python)
02:01:12 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode)
02:01:12 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin)
02:01:12 Commands: psql --version 16.14 (/usr/bin/psql)
02:01:12 Commands: openssl version 3.5.527 (/usr/bin/openssl)
02:01:12
02:01:12 Component: OMERO.py 5.23.1.dev0
02:01:12 Component: OMERO.server 5.6.3-643-6f7718bbff-ice36-b44
02:01:12
02:01:12 Server: icegridnode running
02:01:12 Server: Blitz-0 active (pid = 100570, enabled)
02:01:12 Server: Indexer-0 active (pid = 100592, enabled)
02:01:12 Server: OMERO.Glacier2 active (pid = 100598, enabled)
02:01:12 Server: OMERO.IceStorm active (pid = 100626, enabled)
02:01:12 Server: Processor-0 active (pid = 100624, enabled)
02:01:12 Server: Tables-0 active (pid = 100614, enabled)
02:01:12
02:01:12 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists
02:01:12 Log files: Blitz-0.log 32.1 KB errors=0 warnings=1
02:01:12 Log files: DropBox.log n/a
02:01:12 Log files: FileServer.log n/a
02:01:12 Log files: Indexer-0.log 2.6 KB
02:01:12 Log files: MonitorServer.log n/a
02:01:12 Log files: Processor-0.log 856 B
02:01:12 Log files: Tables-0.log 1.1 KB
02:01:12 Log files: TestDropBox.log n/a
02:01:12 Log files: master.err empty
02:01:12 Log files: master.out 30.5 KB
02:01:12 Log files: Total size 0.07 MB
02:01:12
02:01:12
02:01:12 Environment:OMERO_HOME=(unset)
02:01:12 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server
02:01:12 Environment:OMERO_NODE=(unset)
02:01:12 Environment:OMERO_MASTER=(unset)
02:01:12 Environment:OMERO_USERDIR=(unset)
02:01:12 Environment:OMERO_TMPDIR=(unset)
02:01:12 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:01:12 Environment:PYTHONPATH=(unset)
02:01:12 Environment:ICE_HOME=/opt/ice-3.6.5
02:01:12 Environment:LD_LIBRARY_PATH=(unset)
02:01:12 Environment:DYLD_LIBRARY_PATH=(unset)
02:01:12
02:01:12 OMERO SSL port:4064
02:01:12 OMERO TCP port:4063
02:01:12 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True
02:01:12 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0)
02:01:12
02:01:12 JVM settings: Blitz-${index} -Xmx7200m
02:01:12 JVM settings: Indexer-${index} -Xmx4800m
02:01:12 JVM settings: PixelData-${index} -Xmx7200m
02:01:12 JVM settings: Repository-${index} -Xmx4800m
02:01:12
02:01:12 Jar: lib/server/formats-api.jar Bio-Formats API 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
02:01:12 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
02:01:12 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.5.0 18 March 2026 877c317e4e396381dc76e56c1539b24947f71dce
02:01:12 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3 26 February 2026 70fd9b72a9834f1af4852c1e5b5676c57a2c360e
02:01:12 Jar: lib/server/ome-common.jar OME Common Java 6.2.1 27 February 2026 a24fbcbf04a3a3acba14e9575d7fb1d36a484dff
02:01:12 Jar: lib/server/ome-jai.jar OME JAI 0.1.5 30 June 2025 257a1c1410c0103485248d05752a5174262a38b6
02:01:12 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.4 25 June 2025 57553b46e5f0cf9aefe5d97d2b1c8dd2073a4d37
02:01:12 Jar: lib/server/ome-poi.jar OME POI 5.3.11 11 November 2025 a2f3944ac71db9e7e51a6f64ec46beeb60613afb
02:01:12 Jar: lib/server/ome-xml.jar OME XML library 6.5.3 22 January 2026 21d1362abd9ce26e13888d2b2d028753d21ac96e
02:01:13 Jar: lib/server/omero-blitz.jar jar 5.8.6-SNAPSHOT
02:01:13 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT
02:01:13 Jar: lib/server/omero-gateway.jar jar 5.11.1-SNAPSHOT
02:01:13 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT
02:01:13 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT
02:01:13 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT
02:01:13 Jar: lib/server/omero-server.jar jar 5.7.6-SNAPSHOT
02:01:13 + deactivate
02:01:13 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']'
02:01:13 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin
02:01:13 + export PATH
02:01:13 + unset _OLD_VIRTUAL_PATH
02:01:13 + '[' -n '' ']'
02:01:13 + hash -r
02:01:13 + '[' -n '' ']'
02:01:13 + unset VIRTUAL_ENV
02:01:13 + unset VIRTUAL_ENV_PROMPT
02:01:13 + '[' '!' '' = nondestructive ']'
02:01:13 + unset -f deactivate
02:01:13 Finished: SUCCESS