Started by upstream project "Trigger" build number 30 originally caused by: Started by user devspace Running as SYSTEM Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server [OMERO-server] $ /bin/bash -xe /tmp/jenkins13886701710966949234.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERO_DATA_DIR=/home/omero/omero-server-data + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + omero admin stop Server not running + echo not running not running + sleep 5 + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate + rm -rf /home/omero/workspace/OMERO-server/.venv3 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo' Skipping PURGE_DATA:CleanDbAndRepo + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.4-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.0.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.30.2.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties Copied 1 artifact from "OMERO-build" build number 11 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 11 Copied 2 artifacts from "OMERO-build-build" build number 14 [OMERO-server] $ /bin/bash -xe /tmp/jenkins14891515333238626575.sh + source /home/settings.env ++ OMERO_DB_HOST=pg ++ OMERO_DB_USER=postgres ++ OMERO_DB_PASS= ++ OMERO_ROOT_PASS=omero ++ OMERO_DATA_DIR=/OMERO ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR + OMERO_DB_NAME=OMERO-server + OMERO_DATA_DIR=/home/omero/omero-server-data + mkdir -p /home/omero/omero-server-data + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties ++ ls OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip + ZIP=OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip + '[' '!' -z '' ']' + DIST=OMERO.server-5.6.3-578-b8f107afdf-ice36-b11 + unzip OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip Archive: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/grid/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/profiles/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/error/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/janelia/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/matplotlib/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/ncsa_paledit/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/seaborn/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/luts/wcif/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/analysis_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/annotation_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/export_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/figure_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/import_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/scripts/omero/util_scripts/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/misc/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__1/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__10/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__11/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__2/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__3/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__4/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__5/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__6/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__7/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__8/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__9/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__4/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__5/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__6/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__7/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.1__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/t/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.3__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.4__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.0__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.2__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__1/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__2/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__3/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/var/ creating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/var/tmp/ inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/LICENSE.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/backup.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/mail-senders.example inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/blitz/mail-server.example inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/build.properties inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/env.bat inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/env.sh inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/hibernate.properties inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/ice.config inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-cli.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-indexing-cli.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback-indexing.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/logback.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/mime.types inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/node1.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/node2.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/omero.properties inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/profiles/psql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/rollover.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/Windows.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/error/maintainance.html inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/README inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/default.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/templates.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/grid/windefault.xml inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/ice.config inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/internal.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/master.cfg inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/templates/robot.template inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/etc/testdropbox.config inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/history.rst inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/OMEZarrReader.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/accessors-smart.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/activation.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aggdesigner-algorithm.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aircompressor.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/antlr.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aopalliance.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/apiguardian-api.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/asm.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/avatica-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/avatica-metrics.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-kms.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/aws-java-sdk-s3.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/base.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-anim.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-awt-util.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-bridge.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-codec.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-constants.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-css.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-dom.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-ext.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-gvt.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-i18n.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-parser.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-script.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-shared-resources.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-svg-dom.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-svggen.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-transcoder.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-util.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/batik-xml.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/btm.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/calcite-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/calcite-linq4j.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/cdm-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/checker-qual.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-beanutils.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-codec.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-collections.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-collections4.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-compiler.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-dbcp2.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-io.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-lang.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-lang3.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-logging.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-math.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-math3.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/commons-pool2.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/dom4j.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/ehcache.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/error_prone_annotations.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/failureaccess.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/client/filters.jar inflating: 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OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/solr-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/solr-solrj.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/specification.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-aop.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-beans.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-context-support.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-context.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-expression.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-jdbc.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-jms.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-ldap-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-messaging.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-orm.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-security-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-security-ldap.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/spring-tx.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/sqlite-jdbc.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/subethasmtp.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/turbojpeg.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/uzaygezen-core.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xalan.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xercesImpl.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xml-apis-ext.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xml-apis.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xmlgraphics-commons.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xmpcore.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/lib/server/xpp3.jar inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/README inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/agpl.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/antlr.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/apache-v1.1.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/apache-v2.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/asm.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/bouncy_castle_license.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/bsd.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/cddl-v1.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/cpl-v10.html inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/crystalclear.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/django.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/dom4j.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/epl-v1.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/fbsd.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/freemarker.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/gpl-v2.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/gpl.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/gtest.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/iconsweets_license.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/jamon.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/jmock.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/jquery.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/jtidy.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/lgpl-3.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/lgpl-v2.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/lgpl-v2.1.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/lgpl-v3.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/lgpl.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/matplotlib.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/mit.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/mpl-v1_0.htm inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/npl-1_1.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/path.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/pil.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/postgresql.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/psf-v2.0.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/psf-v2.5.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/scons.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/slf4j.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/tablelayout.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/which.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/zlib-libpng.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/share/licenses/zpl-v2.1.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/README.txt inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/misc/Makefile inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/misc/current.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/misc/enums.py inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__1/OMERO3__7.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__10/OMERO3A__9.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__10.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__11/OMERO3A__5.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__2/OMERO3A__1.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__3/OMERO3A__2.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__3/OMERO3__5.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__4/OMERO3A__3.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__4/OMERO3__5.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__5/OMERO3A__4.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__6/OMERO3A__5.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__7/OMERO3A__6.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__8/OMERO3A__6.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3A__9/OMERO3A__8.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__4/OMERO3__1.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__5/OMERO3__4.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__6/OMERO3__5.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO3__7/OMERO3__6.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.1__0/OMERO4__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.3__0/OMERO4.2__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.1__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4.4__0/OMERO4.3__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO4__0/OMERO3A__11.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.0__0/OMERO4.4__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.0__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.1__1/OMERO5.1__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.1__1.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.2__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/delete-ns-orphans.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__0.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.3__1.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/psql-footer.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/psql-header.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/schema.sql inflating: OMERO.server-5.6.3-578-b8f107afdf-ice36-b11/sql/psql/OMERO5.4__0/views.sql + rm -f OMERO.server-5.6.3-578-b8f107afdf-ice36-b11.zip + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-578-b8f107afdf-ice36-b11 /home/omero/workspace/OMERO-server/OMERO.server + source /home/omero/workspace/OMERO-server/.venv3/bin/activate ++ deactivate nondestructive ++ '[' -n '' ']' ++ '[' -n '' ']' ++ hash -r ++ '[' -n '' ']' ++ unset VIRTUAL_ENV ++ unset VIRTUAL_ENV_PROMPT ++ '[' '!' nondestructive = nondestructive ']' ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 ++ export VIRTUAL_ENV ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ++ export PATH ++ '[' -n '' ']' ++ '[' -z '' ']' ++ _OLD_VIRTUAL_PS1= ++ PS1='(.venv3) ' ++ export PS1 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' ++ export VIRTUAL_ENV_PROMPT ++ hash -r + pip install -U pip Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) Collecting pip Using cached pip-25.3-py3-none-any.whl (1.8 MB) Installing collected packages: pip Attempting uninstall: pip Found existing installation: pip 22.3.1 Uninstalling pip-22.3.1: Successfully uninstalled pip-22.3.1 Successfully installed pip-25.3 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl Collecting zeroc-ice==3.6.5 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 23.3 MB/s 0:00:01 Installing collected packages: zeroc-ice Successfully installed zeroc-ice-3.6.5 + pip install markdown Collecting markdown Using cached markdown-3.10-py3-none-any.whl.metadata (5.1 kB) Using cached markdown-3.10-py3-none-any.whl (107 kB) Installing collected packages: markdown Successfully installed markdown-3.10 + pip install reportlab Collecting reportlab Using cached reportlab-4.4.7-py3-none-any.whl.metadata (1.7 kB) Collecting pillow>=9.0.0 (from reportlab) Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) Collecting charset-normalizer (from reportlab) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (37 kB) Using cached reportlab-4.4.7-py3-none-any.whl (2.0 MB) Using cached pillow-12.1.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB) Using cached charset_normalizer-3.4.4-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (151 kB) Installing collected packages: pillow, charset-normalizer, reportlab Successfully installed charset-normalizer-3.4.4 pillow-12.1.0 reportlab-4.4.7 + pip install omego Collecting omego Using cached omego-0.7.0-py3-none-any.whl Collecting future (from omego) Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) Collecting yaclifw>=0.1.1 (from omego) Using cached yaclifw-0.2.0-py3-none-any.whl Collecting six (from yaclifw>=0.1.1->omego) Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Using cached future-1.0.0-py3-none-any.whl (491 kB) Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) Installing collected packages: six, future, yaclifw, omego Successfully installed future-1.0.0 omego-0.7.0 six-1.17.0 yaclifw-0.2.0 + pip install tables Collecting tables Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.0 kB) Collecting numpy>=1.20.0 (from tables) Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) Collecting numexpr>=2.6.2 (from tables) Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) Collecting packaging (from tables) Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB) Collecting py-cpuinfo (from tables) Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) Collecting blosc2>=2.3.0 (from tables) Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (7.1 kB) Collecting typing-extensions>=4.4.0 (from tables) Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) Collecting ndindex (from blosc2>=2.3.0->tables) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) Collecting msgpack (from blosc2>=2.3.0->tables) Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) Collecting platformdirs (from blosc2>=2.3.0->tables) Using cached platformdirs-4.5.1-py3-none-any.whl.metadata (12 kB) Collecting requests (from blosc2>=2.3.0->tables) Using cached requests-2.32.5-py3-none-any.whl.metadata (4.9 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.4) Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) Using cached idna-3.11-py3-none-any.whl.metadata (8.4 kB) Collecting urllib3<3,>=1.21.1 (from requests->blosc2>=2.3.0->tables) Using cached urllib3-2.6.2-py3-none-any.whl.metadata (6.6 kB) Collecting certifi>=2017.4.17 (from requests->blosc2>=2.3.0->tables) Using cached certifi-2026.1.4-py3-none-any.whl.metadata (2.5 kB) Using cached tables-3.10.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (7.5 MB) Using cached blosc2-3.12.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (4.5 MB) Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) Using cached numpy-2.4.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.6 MB) Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) Using cached packaging-25.0-py3-none-any.whl (66 kB) Using cached platformdirs-4.5.1-py3-none-any.whl (18 kB) Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) Using cached requests-2.32.5-py3-none-any.whl (64 kB) Using cached idna-3.11-py3-none-any.whl (71 kB) Using cached urllib3-2.6.2-py3-none-any.whl (131 kB) Using cached certifi-2026.1.4-py3-none-any.whl (152 kB) Installing collected packages: py-cpuinfo, urllib3, typing-extensions, platformdirs, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables Successfully installed blosc2-3.12.2 certifi-2026.1.4 idna-3.11 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.0 packaging-25.0 platformdirs-4.5.1 py-cpuinfo-9.0.0 requests-2.32.5 tables-3.10.2 typing-extensions-4.15.0 urllib3-2.6.2 + pip install jinja2 Collecting jinja2 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) Collecting MarkupSafe>=2.0 (from jinja2) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) Installing collected packages: MarkupSafe, jinja2 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 + pip install omero-py Collecting omero-py Using cached omero_py-5.21.3-py3-none-any.whl.metadata (6.5 kB) Collecting appdirs (from omero-py) Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.1.0) Collecting PyYAML (from omero-py) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.32.5) Collecting portalocker (from omero-py) Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.1.4) Using cached omero_py-5.21.3-py3-none-any.whl (2.8 MB) Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) Installing collected packages: appdirs, PyYAML, portalocker, omero-py Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.21.3 portalocker-3.2.0 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata Collecting omero-metadata Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-y6msxe7f/omero-metadata_44ddcc83bda04905bba50c5f2368ea16 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-y6msxe7f/omero-metadata_44ddcc83bda04905bba50c5f2368ea16 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 452849eb5619a91c74298b1047aa4bc2bf30e99d Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.21.3) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) Collecting pandas (from omero-metadata) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.1.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas->omero-metadata) Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas->omero-metadata) Using cached tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB) Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.1.4) Using cached pandas-2.3.3-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.8 MB) Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB) Using cached tzdata-2025.3-py2.py3-none-any.whl (348 kB) Building wheels for collected packages: omero-metadata Building wheel for omero-metadata (pyproject.toml): started Building wheel for omero-metadata (pyproject.toml): finished with status 'done' Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39282 sha256=133dd84e843f6ba8fa5159ce92494a0dd7ed2a4fb82c6d99bad6473a797c042f Stored in directory: /tmp/pip-ephem-wheel-cache-j4qe6c35/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b Successfully built omero-metadata Installing collected packages: pytz, tzdata, python-dateutil, pandas, omero-metadata Successfully installed omero-metadata-0.13.1.dev0 pandas-2.3.3 python-dateutil-2.9.0.post0 pytz-2025.2 tzdata-2025.3 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render Collecting omero-cli-render Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-yu4f5jxv/omero-cli-render_b0970816d1754e7098898d1db7d4351b Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-yu4f5jxv/omero-cli-render_b0970816d1754e7098898d1db7d4351b Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 82e3f13b20690df14f7d914b763499f1f2de98d9 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.21.3) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.1.0) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.1.4) Building wheels for collected packages: omero-cli-render Building wheel for omero-cli-render (pyproject.toml): started Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19840 sha256=f0b012eb6022718393fcc500a814d8bd2e01526769cc381af02247d41298b52f Stored in directory: /tmp/pip-ephem-wheel-cache-kz__z6s8/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee Successfully built omero-cli-render Installing collected packages: omero-cli-render Successfully installed omero-cli-render-0.8.2.dev0 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate Collecting omero-cli-duplicate Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-vc5jfg1l/omero-cli-duplicate_cd146c0d4c6a447e917c5a706f84f708 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-vc5jfg1l/omero-cli-duplicate_cd146c0d4c6a447e917c5a706f84f708 Running command git checkout -b merge_ci --track origin/merge_ci Switched to a new branch 'merge_ci' branch 'merge_ci' set up to track 'origin/merge_ci'. Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 77819f22290cf329c7fa113f06e1f9650bfacd03 Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.21.3) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.1.4) Building wheels for collected packages: omero-cli-duplicate Building wheel for omero-cli-duplicate (pyproject.toml): started Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11541 sha256=bb676736a0452aa6fcc1a50f6a4058d7826cdd024baf3f1aeebc02cfee054dbf Stored in directory: /tmp/pip-ephem-wheel-cache-kn_hidov/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 Successfully built omero-cli-duplicate Installing collected packages: omero-cli-duplicate Successfully installed omero-cli-duplicate-0.4.1.dev0 + pip install omero-certificates Collecting omero-certificates Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.21.3) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.1.4) Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) Installing collected packages: omero-certificates Successfully installed omero-certificates-0.4.0 + for x in *.tar.gz + pip install -U omero_dropbox-5.7.1.dev0.tar.gz Processing ./omero_dropbox-5.7.1.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.21.3) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) Requirement already satisfied: numpy<3 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.1.4) Building wheels for collected packages: omero-dropbox Building wheel for omero-dropbox (pyproject.toml): started Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49138 sha256=e5b2ebda6845d24e3a86979013ff11bb7a39271f6f57a3b509f5e5dde58d1bd5 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 Successfully built omero-dropbox Installing collected packages: omero-dropbox Successfully installed omero-dropbox-5.7.1.dev0 + for x in *.tar.gz + pip install -U omero_marshal-0.9.2.dev0.tar.gz Processing ./omero_marshal-0.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero_marshal Building wheel for omero_marshal (pyproject.toml): started Building wheel for omero_marshal (pyproject.toml): finished with status 'done' Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88132 sha256=370a7f713128de003ee893c1e3a2d9479c712a9e306941317a32c599f850d84c Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 Successfully built omero_marshal Installing collected packages: omero_marshal Successfully installed omero_marshal-0.9.2.dev0 + for x in *.tar.gz + pip install -U omero_py-5.22.0.dev0.tar.gz Processing ./omero_py-5.22.0.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.4.0) Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (12.1.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (2.32.5) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.0.dev0) (3.2.0) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.0.dev0) (2026.1.4) Building wheels for collected packages: omero-py Building wheel for omero-py (pyproject.toml): started Building wheel for omero-py (pyproject.toml): finished with status 'done' Created wheel for omero-py: filename=omero_py-5.22.0.dev0-py3-none-any.whl size=2786250 sha256=bc1467253c24db543cf30f8fc1ca1dd6b39e00e9b95e951a786a3a99f3d209d6 Stored in directory: /home/omero/.cache/pip/wheels/b2/dd/fb/0f3c8a08eddbfe6a2bff7fe7d61ee876973c474d282bc441e3 Successfully built omero-py Installing collected packages: omero-py Attempting uninstall: omero-py Found existing installation: omero-py 5.21.3 Uninstalling omero-py-5.21.3: Successfully uninstalled omero-py-5.21.3 Successfully installed omero-py-5.22.0.dev0 + for x in *.tar.gz + pip install -U omero_scripts-5.9.2.dev0.tar.gz Processing ./omero_scripts-5.9.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Building wheels for collected packages: omero-scripts Building wheel for omero-scripts (pyproject.toml): started Building wheel for omero-scripts (pyproject.toml): finished with status 'done' Created wheel for omero-scripts: filename=omero_scripts-5.9.2.dev0-py3-none-any.whl size=136991 sha256=d3f4c3449c3487c3e2d6184abba6494c0b5ff5a598814473a5fd6fc4be3f06b1 Stored in directory: /home/omero/.cache/pip/wheels/e3/db/94/c7ed73401c8459f3935212f514ee953d11b520ca8c20333850 Successfully built omero-scripts Installing collected packages: omero-scripts Successfully installed omero-scripts-5.9.2.dev0 + for x in *.tar.gz + pip install -U omero_web-5.30.2.dev0.tar.gz Processing ./omero_web-5.30.2.dev0.tar.gz Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (5.22.0.dev0) Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.30.2.dev0) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl.metadata (23 kB) Collecting Django<5.3,>=5.2.9 (from omero-web==5.30.2.dev0) Using cached django-5.2.10-py3-none-any.whl.metadata (4.1 kB) Collecting django-pipeline (from omero-web==5.30.2.dev0) Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) Collecting django-cors-headers==3.7.0 (from omero-web==5.30.2.dev0) Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) Collecting whitenoise>=5.3.0 (from omero-web==5.30.2.dev0) Using cached whitenoise-6.11.0-py3-none-any.whl.metadata (3.7 kB) Collecting gunicorn>=19.3 (from omero-web==5.30.2.dev0) Using cached gunicorn-23.0.0-py3-none-any.whl.metadata (4.4 kB) Requirement already satisfied: omero-marshal>=0.9.1 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (0.9.2.dev0) Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (12.1.0) Requirement already satisfied: pytz in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (2025.2) Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (3.2.0) Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.30.2.dev0) (25.0) Collecting importlib-resources (from omero-web==5.30.2.dev0) Using cached importlib_resources-6.5.2-py3-none-any.whl.metadata (3.9 kB) Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) Using cached asgiref-3.11.0-py3-none-any.whl.metadata (9.3 kB) Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.30.2.dev0) Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.4.4) Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (1.0.0) Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.4.0) Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (6.0.3) Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.6.5) Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.32.5) Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline->omero-web==5.30.2.dev0) (65.5.1) Collecting wheel (from django-pipeline->omero-web==5.30.2.dev0) Using cached wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.4.4) Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (3.11) Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2.6.2) Requirement already satisfied: certifi>=2017.4.17 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.30.2.dev0) (2026.1.4) Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) Using cached django-5.2.10-py3-none-any.whl (8.3 MB) Using cached asgiref-3.11.0-py3-none-any.whl (24 kB) Using cached concurrent_log_handler-0.9.28-py3-none-any.whl (28 kB) Using cached gunicorn-23.0.0-py3-none-any.whl (85 kB) Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) Using cached whitenoise-6.11.0-py3-none-any.whl (20 kB) Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) Using cached importlib_resources-6.5.2-py3-none-any.whl (37 kB) Using cached wheel-0.45.1-py3-none-any.whl (72 kB) Building wheels for collected packages: omero-web Building wheel for omero-web (pyproject.toml): started Building wheel for omero-web (pyproject.toml): finished with status 'done' Created wheel for omero-web: filename=omero_web-5.30.2.dev0-py3-none-any.whl size=2819190 sha256=1d25a90e68c6d6494b072f275d30b2d434b4db9839a6e6bd165fbfd432e514c7 Stored in directory: /home/omero/.cache/pip/wheels/22/8a/f9/2aa2b64b8351936989ad8693ee70db658c8360167f1ee574e7 Successfully built omero-web Installing collected packages: whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web Successfully installed Django-5.2.10 asgiref-3.11.0 concurrent-log-handler-0.9.28 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-23.0.0 importlib-resources-6.5.2 omero-web-5.30.2.dev0 sqlparse-0.5.5 wheel-0.45.1 whitenoise-6.11.0 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. --2026-01-07 15:19:04-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.108.133, 185.199.111.133, 185.199.110.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.108.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 126476 (124K) [text/plain] Saving to: ‘Figure_To_Pdf.py’ 0K .......... .......... .......... .......... .......... 40% 4.05M 0s 50K .......... .......... .......... .......... .......... 80% 11.6M 0s 100K .......... .......... ... 100% 4.76M=0.02s 2026-01-07 15:19:04 (5.72 MB/s) - ‘Figure_To_Pdf.py’ saved [126476/126476] + chmod 755 Figure_To_Pdf.py + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts + omero config set omero.db.name OMERO-server + omero config set omero.db.host pg + omero config set omero.db.user postgres + omero config set omero.data.dir /home/omero/omero-server-data + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% + omero config set omero.db.poolsize 25 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts + omero config set omero.security.trustStorePassword changeit + omero config set omero.mail.config true + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED --add-exports java.naming/com.sun.jndi.ldap=ALL-UNNAMED' + omero certificates OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025) certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 + '[' false = true ']' + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbcommand => upgrade 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbhost => localhost 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbname => OMERO-server 2026-01-07 15:19:18,247 [ omego.db] DEBUG dbpass => omero 2026-01-07 15:19:18,248 [ omego.db] DEBUG dbuser => omero 2026-01-07 15:19:18,248 [ omego.db] DEBUG rootpass => omero 2026-01-07 15:19:18,248 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 2026-01-07 15:19:18,248 [omego.extern] INFO Executing : omero version OMERO.py version: OMERO.server version: 5.6.3-578-b8f107afdf-ice36-b11 5.22.0.dev0 2026-01-07 15:19:19,428 [omego.extern] INFO Completed [1.181 s] 2026-01-07 15:19:19,429 [omego.extern] DEBUG Using omero CLI from omero 2026-01-07 15:19:19,429 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 2026-01-07 15:19:19,429 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-01-07 15:19:19,429 [omego.extern] INFO Executing : omero config get --show-password 2026-01-07 15:19:20,556 [omego.extern] INFO Completed [1.127 s] 2026-01-07 15:19:20,556 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-01-07 15:19:20,556 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 2026-01-07 15:19:20,561 [omego.extern] INFO Completed [0.005 s] 2026-01-07 15:19:20,561 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n' 2026-01-07 15:19:20,561 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11 2026-01-07 15:19:20,561 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-01-07 15:19:20,562 [omego.extern] INFO Executing : omero config get --show-password 2026-01-07 15:19:21,685 [omego.extern] INFO Completed [1.123 s] 2026-01-07 15:19:21,685 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-01-07 15:19:21,685 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 2026-01-07 15:19:21,695 [omego.extern] INFO Completed [0.009 s] 2026-01-07 15:19:21,695 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.10") at port "5432".\n' 2026-01-07 15:19:21,695 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-01-07 15:19:21,695 [omego.extern] INFO Running [current environment]: omero config get --show-password 2026-01-07 15:19:21,695 [omego.extern] INFO Executing : omero config get --show-password 2026-01-07 15:19:22,865 [omego.extern] INFO Completed [1.170 s] 2026-01-07 15:19:22,865 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 2026-01-07 15:19:22,865 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 2026-01-07 15:19:22,875 [omego.extern] INFO Completed [0.010 s] 2026-01-07 15:19:22,875 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 2026-01-07 15:19:22,875 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 2026-01-07 15:19:22,877 [ omego.db] INFO Database is already at OMERO5.4__0 + export LANG=en_US.UTF-8 + LANG=en_US.UTF-8 + export LANGUAGE=en_US:en + LANGUAGE=en_US:en + export LC_ALL=en_US.UTF-8 + LC_ALL=en_US.UTF-8 + BUILD_ID=DONT_KILL_ME + omero admin start WARNING: lock files in /home/omero/omero-server-data ---------------------------------------- /home/omero/omero-server-data/.omero/repository/a37b7afc-9946-4a12-8a83-a98dc63b1e3c/.lock ---------------------------------------- You may want to stop all server processes and remove these files manually. Lock files can remain after an abrupt server outage and are especially frequent on remotely mounted filesystems like NFS. No descriptor given. Using etc/grid/default.xml Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry Waiting on startup. Use CTRL-C to exit + omero admin waitup Waiting on startup. Use CTRL-C to exit + omero admin diagnostics ================================================================================ OMERO Diagnostics (admin) ================================================================================ Commands: java -version 17.0.17 (/usr/bin/java) Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) Commands: psql --version 16.11 (/usr/bin/psql) Commands: openssl version 3.5.11 (/usr/bin/openssl) Component: OMERO.py 5.22.0.dev0 Component: OMERO.server 5.6.3-578-b8f107afdf-ice36-b11 Server: icegridnode running Server: Blitz-0 active (pid = 2159, enabled) Server: Indexer-0 activating (enabled) Server: OMERO.Glacier2 active (pid = 2191, enabled) Server: OMERO.IceStorm active (pid = 2226, enabled) Server: Processor-0 activating (enabled) Server: Tables-0 activating (enabled) Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists Log files: Blitz-0.log 23.7 KB errors=0 warnings=1 Log files: DropBox.log n/a Log files: FileServer.log n/a Log files: Indexer-0.log 114 B Log files: MonitorServer.log n/a Log files: Processor-0.log 281 B Log files: Tables-0.log 281 B Log files: TestDropBox.log n/a Log files: master.err empty Log files: master.out 30.5 KB Log files: Total size 0.05 MB Environment:OMERO_HOME=(unset) Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server Environment:OMERO_NODE=(unset) Environment:OMERO_MASTER=(unset) Environment:OMERO_USERDIR=(unset) Environment:OMERO_TMPDIR=(unset) Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin Environment:PYTHONPATH=(unset) Environment:ICE_HOME=/opt/ice-3.6.5 Environment:LD_LIBRARY_PATH=(unset) Environment:DYLD_LIBRARY_PATH=(unset) OMERO SSL port:4064 OMERO TCP port:4063 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) JVM settings: Blitz-${index} -Xmx7200m JVM settings: Indexer-${index} -Xmx4800m JVM settings: PixelData-${index} -Xmx7200m JVM settings: Repository-${index} -Xmx4800m Jar: lib/server/formats-api.jar Bio-Formats API 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.4.0-SNAPSHOT 7 January 2026 4666636f36140f1c1350857d10c73653acd247c0 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.3-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/ome-common.jar OME Common Java 6.1.2-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/ome-xml.jar OME XML library 6.5.3-SNAPSHOT 7 January 2026 01c95562c40879da486f77d2eeb99d4bea47b130 Jar: lib/server/omero-blitz.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-common.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-gateway.jar jar 5.10.5-SNAPSHOT Jar: lib/server/omero-model.jar jar 5.7.4-SNAPSHOT Jar: lib/server/omero-renderer.jar jar 5.6.4-SNAPSHOT Jar: lib/server/omero-romio.jar jar 5.8.4-SNAPSHOT Jar: lib/server/omero-server.jar jar 5.7.4-SNAPSHOT + deactivate + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin + export PATH + unset _OLD_VIRTUAL_PATH + '[' -n '' ']' + hash -r + '[' -n '' ']' + unset VIRTUAL_ENV + unset VIRTUAL_ENV_PROMPT + '[' '!' '' = nondestructive ']' + unset -f deactivate Finished: SUCCESS