00:46:38 Started by upstream project "Trigger" build number 179 00:46:38 originally caused by: 00:46:38 Started by timer 00:46:38 Running as SYSTEM 00:46:38 Building remotely on omero (swarm rocky9 ice36 java11) in workspace /home/omero/workspace/OMERO-server 00:46:38 [OMERO-server] $ /bin/bash -xe /tmp/jenkins13270518595135021044.sh 00:46:38 + source /home/settings.env 00:46:38 ++ OMERO_DB_HOST=pg 00:46:38 ++ OMERO_DB_USER=postgres 00:46:38 ++ OMERO_DB_PASS= 00:46:38 ++ OMERO_ROOT_PASS=omero 00:46:38 ++ OMERO_DATA_DIR=/OMERO 00:46:38 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:46:38 + OMERO_DB_NAME=OMERO-server 00:46:38 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:46:38 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:38 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:46:38 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:46:38 + '[' -e /home/omero/workspace/OMERO-server/OMERO.server ']' 00:46:38 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:46:38 ++ deactivate nondestructive 00:46:38 ++ '[' -n '' ']' 00:46:38 ++ '[' -n '' ']' 00:46:38 ++ hash -r 00:46:38 ++ '[' -n '' ']' 00:46:38 ++ unset VIRTUAL_ENV 00:46:38 ++ unset VIRTUAL_ENV_PROMPT 00:46:38 ++ '[' '!' nondestructive = nondestructive ']' 00:46:38 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:46:38 ++ export VIRTUAL_ENV 00:46:38 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:38 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:38 ++ export PATH 00:46:38 ++ '[' -n '' ']' 00:46:38 ++ '[' -z '' ']' 00:46:38 ++ _OLD_VIRTUAL_PS1= 00:46:38 ++ PS1='(.venv3) ' 00:46:38 ++ export PS1 00:46:38 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:46:38 ++ export VIRTUAL_ENV_PROMPT 00:46:38 ++ hash -r 00:46:38 + omero admin stop 00:46:40 Waiting on shutdown. Use CTRL-C to exit 00:46:40 .+ sleep 5 00:46:55 + deactivate 00:46:55 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:46:55 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:46:55 + export PATH 00:46:55 + unset _OLD_VIRTUAL_PATH 00:46:55 + '[' -n '' ']' 00:46:55 + hash -r 00:46:55 + '[' -n '' ']' 00:46:55 + unset VIRTUAL_ENV 00:46:55 + unset VIRTUAL_ENV_PROMPT 00:46:55 + '[' '!' '' = nondestructive ']' 00:46:55 + unset -f deactivate 00:46:55 + rm -rf /home/omero/workspace/OMERO-server/.venv3 00:46:56 + python3.11 -m venv /home/omero/workspace/OMERO-server/.venv3 00:47:00 + '[' false = true ']' 00:47:00 + echo 'Skipping PURGE_DATA:CleanDbAndRepo' 00:47:00 Skipping PURGE_DATA:CleanDbAndRepo 00:47:00 + rm -rf /home/omero/workspace/OMERO-server/omero-blitz-5.8.5-SNAPSHOT-python.zip /home/omero/workspace/OMERO-server/omero_dropbox-5.7.1.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_marshal-0.9.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_py-5.22.2.dev0.tar.gz /home/omero/workspace/OMERO-server/omero_scripts-5.10.1.dev0.tar.gz /home/omero/workspace/OMERO-server/OMERO.server /home/omero/workspace/OMERO-server/omero_web-5.31.1.dev0.tar.gz /home/omero/workspace/OMERO-server/version.properties 00:47:01 Copied 1 artifact from "OMERO-build" build number 137 00:47:02 Copied 5 artifacts from "OMERO-python-superbuild-build" build number 128 00:47:02 Copied 2 artifacts from "OMERO-build-build" build number 146 00:47:02 [OMERO-server] $ /bin/bash -xe /tmp/jenkins11113055550827721564.sh 00:47:02 + source /home/settings.env 00:47:02 ++ OMERO_DB_HOST=pg 00:47:02 ++ OMERO_DB_USER=postgres 00:47:02 ++ OMERO_DB_PASS= 00:47:02 ++ OMERO_ROOT_PASS=omero 00:47:02 ++ OMERO_DATA_DIR=/OMERO 00:47:02 ++ export OMERO_DB_USER OMERO_DB_PASS OMERO_ROOT_PASS OMERO_DATA_DIR 00:47:02 + OMERO_DB_NAME=OMERO-server 00:47:02 + OMERO_DATA_DIR=/home/omero/omero-server-data 00:47:02 + mkdir -p /home/omero/omero-server-data 00:47:02 + OMERO_DIST=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + export OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:47:02 + export ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:02 + ZIP_FILE=/home/omero/workspace/OMERO-server/omero-blitz-VERSION-python.zip 00:47:02 + export VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:02 + VERSION_PROPERTIES=/home/omero/workspace/OMERO-server/version.properties 00:47:02 ++ ls OMERO.server-5.6.3-594-2425036b14-ice36-b137.zip 00:47:02 + ZIP=OMERO.server-5.6.3-594-2425036b14-ice36-b137.zip 00:47:02 + '[' '!' -z '' ']' 00:47:02 + DIST=OMERO.server-5.6.3-594-2425036b14-ice36-b137 00:47:02 + unzip OMERO.server-5.6.3-594-2425036b14-ice36-b137.zip 00:47:02 Archive: OMERO.server-5.6.3-594-2425036b14-ice36-b137.zip 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/blitz/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/grid/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/profiles/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/error/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/grid/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/janelia/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/matplotlib/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/ncsa_paledit/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/seaborn/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/luts/wcif/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/analysis_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/annotation_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/export_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/figure_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/import_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/scripts/omero/util_scripts/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/server/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/share/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/share/licenses/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/misc/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__1/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__10/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__11/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__2/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__3/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__4/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__5/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__6/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__7/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__8/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3A__9/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3__4/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3__5/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3__6/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO3__7/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.1__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.2__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.2__0/t/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.3__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.4__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.0__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.1__1/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.2__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__1/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__2/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__3/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/var/ 00:47:02 creating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/var/tmp/ 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/LICENSE.txt 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/backup.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/blitz/mail-senders.example 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/blitz/mail-server.example 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/build.properties 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/env.bat 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/env.sh 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/hibernate.properties 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/ice.config 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/logback-cli.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/logback-indexing-cli.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/logback-indexing.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/logback.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/mime.types 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/node1.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/node2.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/omero.properties 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/profiles/psql 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/rollover.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/Windows.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/error/maintainance.html 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/grid/README 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/grid/default.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/grid/templates.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/grid/windefault.xml 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/ice.config 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/internal.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/master.cfg 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/templates/robot.template 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/etc/testdropbox.config 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/history.rst 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/OMEZarrReader.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/accessors-smart.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/activation.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aggdesigner-algorithm.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aircompressor.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/antlr.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aopalliance.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/apiguardian-api.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/asm.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/avatica-core.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/avatica-metrics.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aws-java-sdk-core.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aws-java-sdk-kms.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/aws-java-sdk-s3.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/base.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-anim.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-awt-util.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-bridge.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-codec.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-constants.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-css.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-dom.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-ext.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-gvt.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-i18n.jar 00:47:02 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/lib/client/batik-parser.jar 00:47:02 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OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.2__0/OMERO4.1__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.2__0/t/OMERO4.1__0.py 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.2__0/t/OMERO4.1__0.test 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.3__0/OMERO4.2__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.3__0/omero-4.2-data-fix.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.4__0/OMERO4.1__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4.4__0/OMERO4.3__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO4__0/OMERO3A__11.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-fix.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.0__0/2014-SV2-empty-passwords-list.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.0__0/OMERO4.4__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.1__1/OMERO5.0__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.1__1/OMERO5.1-delete-and-disable-shares.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.1__1/OMERO5.1-enable-shares.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.1__1/OMERO5.1__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.2__0/OMERO5.1__1.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.2__0/OMERO5.2-delete-and-disable-shares.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.2__0/OMERO5.2-enable-shares.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/OMERO5.2__0-precheck.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/OMERO5.2__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/OMERO5.3-index-files.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/delete-ns-orphans.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/reverse_shape_color_argb_to_rgba.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.3__0/shape_color_argb_to_rgba.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__1/OMERO5.4DEV__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__2/OMERO5.4DEV__1.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4DEV__3/OMERO5.4DEV__2.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/OMERO5.3__0-precheck.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/OMERO5.3__0.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/OMERO5.3__1-precheck.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/OMERO5.3__1.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/OMERO5.4DEV__3.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/allow-guest-user-without-password.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/psql-footer.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/psql-header.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/schema.sql 00:47:04 inflating: OMERO.server-5.6.3-594-2425036b14-ice36-b137/sql/psql/OMERO5.4__0/views.sql 00:47:04 + rm -f OMERO.server-5.6.3-594-2425036b14-ice36-b137.zip 00:47:04 + mv /home/omero/workspace/OMERO-server/OMERO.server-5.6.3-594-2425036b14-ice36-b137 /home/omero/workspace/OMERO-server/OMERO.server 00:47:04 + source /home/omero/workspace/OMERO-server/.venv3/bin/activate 00:47:04 ++ deactivate nondestructive 00:47:04 ++ '[' -n '' ']' 00:47:04 ++ '[' -n '' ']' 00:47:04 ++ hash -r 00:47:04 ++ '[' -n '' ']' 00:47:04 ++ unset VIRTUAL_ENV 00:47:04 ++ unset VIRTUAL_ENV_PROMPT 00:47:04 ++ '[' '!' nondestructive = nondestructive ']' 00:47:04 ++ VIRTUAL_ENV=/home/omero/workspace/OMERO-server/.venv3 00:47:04 ++ export VIRTUAL_ENV 00:47:04 ++ _OLD_VIRTUAL_PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:04 ++ PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:47:04 ++ export PATH 00:47:04 ++ '[' -n '' ']' 00:47:04 ++ '[' -z '' ']' 00:47:04 ++ _OLD_VIRTUAL_PS1= 00:47:04 ++ PS1='(.venv3) ' 00:47:04 ++ export PS1 00:47:04 ++ VIRTUAL_ENV_PROMPT='(.venv3) ' 00:47:04 ++ export VIRTUAL_ENV_PROMPT 00:47:04 ++ hash -r 00:47:04 + pip install -U pip 00:47:04 Requirement already satisfied: pip in ./.venv3/lib64/python3.11/site-packages (22.3.1) 00:47:04 Collecting pip 00:47:04 Using cached pip-26.0.1-py3-none-any.whl (1.8 MB) 00:47:04 Installing collected packages: pip 00:47:04 Attempting uninstall: pip 00:47:04 Found existing installation: pip 22.3.1 00:47:04 Uninstalling pip-22.3.1: 00:47:04 Successfully uninstalled pip-22.3.1 00:47:05 Successfully installed pip-26.0.1 00:47:05 WARNING: There was an error checking the latest version of pip. 00:47:05 + pip install https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl 00:47:06 Collecting zeroc-ice==3.6.5 00:47:06 Downloading https://github.com/glencoesoftware/zeroc-ice-py-linux-x86_64/releases/download/20240202/zeroc_ice-3.6.5-cp311-cp311-manylinux_2_28_x86_64.whl (37.3 MB) 00:47:09 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 37.3/37.3 MB 13.7 MB/s 0:00:02 00:47:09 Installing collected packages: zeroc-ice 00:47:10 Successfully installed zeroc-ice-3.6.5 00:47:10 + pip install markdown 00:47:10 Collecting markdown 00:47:10 Using cached markdown-3.10.2-py3-none-any.whl.metadata (5.1 kB) 00:47:10 Using cached markdown-3.10.2-py3-none-any.whl (108 kB) 00:47:10 Installing collected packages: markdown 00:47:10 Successfully installed markdown-3.10.2 00:47:10 + pip install reportlab 00:47:11 Collecting reportlab 00:47:11 Using cached reportlab-4.4.10-py3-none-any.whl.metadata (1.7 kB) 00:47:11 Collecting pillow>=9.0.0 (from reportlab) 00:47:11 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) 00:47:11 Collecting charset-normalizer (from reportlab) 00:47:11 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (40 kB) 00:47:11 Using cached reportlab-4.4.10-py3-none-any.whl (2.0 MB) 00:47:11 Using cached pillow-12.2.0-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.1 MB) 00:47:11 Using cached charset_normalizer-3.4.7-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (214 kB) 00:47:11 Installing collected packages: pillow, charset-normalizer, reportlab 00:47:12 00:47:12 Successfully installed charset-normalizer-3.4.7 pillow-12.2.0 reportlab-4.4.10 00:47:12 + pip install omego 00:47:13 Collecting omego 00:47:13 Using cached omego-0.8.0-py3-none-any.whl.metadata (1.9 kB) 00:47:13 Collecting future (from omego) 00:47:13 Using cached future-1.0.0-py3-none-any.whl.metadata (4.0 kB) 00:47:13 Collecting yaclifw>=0.1.1 (from omego) 00:47:13 Using cached yaclifw-0.2.0-py3-none-any.whl 00:47:13 Collecting six (from yaclifw>=0.1.1->omego) 00:47:13 Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) 00:47:13 Using cached omego-0.8.0-py3-none-any.whl (41 kB) 00:47:13 Using cached future-1.0.0-py3-none-any.whl (491 kB) 00:47:13 Using cached six-1.17.0-py2.py3-none-any.whl (11 kB) 00:47:13 Installing collected packages: six, future, yaclifw, omego 00:47:13 00:47:13 Successfully installed future-1.0.0 omego-0.8.0 six-1.17.0 yaclifw-0.2.0 00:47:13 + pip install tables 00:47:14 Collecting tables 00:47:14 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.1 kB) 00:47:14 Collecting numpy>=1.20.0 (from tables) 00:47:14 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) 00:47:14 Collecting numexpr>=2.6.2 (from tables) 00:47:14 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (9.0 kB) 00:47:14 Collecting packaging (from tables) 00:47:14 Downloading packaging-26.2-py3-none-any.whl.metadata (3.5 kB) 00:47:14 Collecting py-cpuinfo (from tables) 00:47:14 Using cached py_cpuinfo-9.0.0-py3-none-any.whl.metadata (794 bytes) 00:47:14 Collecting blosc2>=2.3.0 (from tables) 00:47:14 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.2 kB) 00:47:15 Collecting ndindex (from blosc2>=2.3.0->tables) 00:47:15 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (3.6 kB) 00:47:15 Collecting msgpack (from blosc2>=2.3.0->tables) 00:47:15 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:47:15 Collecting requests (from blosc2>=2.3.0->tables) 00:47:15 Using cached requests-2.33.1-py3-none-any.whl.metadata (4.8 kB) 00:47:15 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->blosc2>=2.3.0->tables) (3.4.7) 00:47:15 Collecting idna<4,>=2.5 (from requests->blosc2>=2.3.0->tables) 00:47:15 Using cached idna-3.13-py3-none-any.whl.metadata (8.0 kB) 00:47:15 Collecting urllib3<3,>=1.26 (from requests->blosc2>=2.3.0->tables) 00:47:15 Using cached urllib3-2.6.3-py3-none-any.whl.metadata (6.9 kB) 00:47:15 Collecting certifi>=2023.5.7 (from requests->blosc2>=2.3.0->tables) 00:47:15 Using cached certifi-2026.4.22-py3-none-any.whl.metadata (2.5 kB) 00:47:15 Using cached tables-3.11.1-cp311-abi3-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (7.2 MB) 00:47:15 Using cached blosc2-4.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (5.2 MB) 00:47:15 Using cached numexpr-2.14.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (442 kB) 00:47:15 Using cached numpy-2.4.4-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.9 MB) 00:47:15 Using cached msgpack-1.1.2-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (426 kB) 00:47:15 Using cached ndindex-1.10.1-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (516 kB) 00:47:15 Downloading packaging-26.2-py3-none-any.whl (100 kB) 00:47:15 Using cached py_cpuinfo-9.0.0-py3-none-any.whl (22 kB) 00:47:15 Using cached requests-2.33.1-py3-none-any.whl (64 kB) 00:47:15 Using cached idna-3.13-py3-none-any.whl (68 kB) 00:47:15 Using cached urllib3-2.6.3-py3-none-any.whl (131 kB) 00:47:15 Using cached certifi-2026.4.22-py3-none-any.whl (135 kB) 00:47:15 Installing collected packages: py-cpuinfo, urllib3, packaging, numpy, ndindex, msgpack, idna, certifi, requests, numexpr, blosc2, tables 00:47:19 00:47:19 Successfully installed blosc2-4.1.2 certifi-2026.4.22 idna-3.13 msgpack-1.1.2 ndindex-1.10.1 numexpr-2.14.1 numpy-2.4.4 packaging-26.2 py-cpuinfo-9.0.0 requests-2.33.1 tables-3.11.1 urllib3-2.6.3 00:47:19 + pip install jinja2 00:47:19 Collecting jinja2 00:47:19 Using cached jinja2-3.1.6-py3-none-any.whl.metadata (2.9 kB) 00:47:19 Collecting MarkupSafe>=2.0 (from jinja2) 00:47:19 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.7 kB) 00:47:19 Using cached jinja2-3.1.6-py3-none-any.whl (134 kB) 00:47:19 Using cached markupsafe-3.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (22 kB) 00:47:19 Installing collected packages: MarkupSafe, jinja2 00:47:19 00:47:19 Successfully installed MarkupSafe-3.0.3 jinja2-3.1.6 00:47:19 + pip install omero-py 00:47:20 Collecting omero-py 00:47:20 Using cached omero_py-5.22.1-py3-none-any.whl.metadata (6.5 kB) 00:47:20 Collecting appdirs (from omero-py) 00:47:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl.metadata (9.0 kB) 00:47:20 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py) (1.0.0) 00:47:20 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.4.4) 00:47:20 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (12.2.0) 00:47:20 Collecting PyYAML (from omero-py) 00:47:20 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (2.4 kB) 00:47:20 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py) (3.6.5) 00:47:20 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py) (2.33.1) 00:47:20 Collecting portalocker (from omero-py) 00:47:20 Using cached portalocker-3.2.0-py3-none-any.whl.metadata (8.7 kB) 00:47:20 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.4.7) 00:47:20 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (3.13) 00:47:20 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2.6.3) 00:47:20 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py) (2026.4.22) 00:47:20 Using cached omero_py-5.22.1-py3-none-any.whl (2.8 MB) 00:47:20 Using cached appdirs-1.4.4-py2.py3-none-any.whl (9.6 kB) 00:47:20 Using cached portalocker-3.2.0-py3-none-any.whl (22 kB) 00:47:20 Using cached pyyaml-6.0.3-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (806 kB) 00:47:20 Installing collected packages: appdirs, PyYAML, portalocker, omero-py 00:47:22 00:47:22 Successfully installed PyYAML-6.0.3 appdirs-1.4.4 omero-py-5.22.1 portalocker-3.2.0 00:47:22 + pip install pyarrow 00:47:22 Collecting pyarrow 00:47:22 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl.metadata (3.0 kB) 00:47:22 Using cached pyarrow-24.0.0-cp311-cp311-manylinux_2_28_x86_64.whl (48.8 MB) 00:47:23 Installing collected packages: pyarrow 00:47:24 Successfully installed pyarrow-24.0.0 00:47:24 + pip install git+https://github.com/snoopycrimecop/omero-metadata.git@merge_ci#egg=omero-metadata 00:47:24 Collecting omero-metadata 00:47:24 Cloning https://github.com/snoopycrimecop/omero-metadata.git (to revision merge_ci) to /tmp/pip-install-u06_qo0z/omero-metadata_20aeb8916cb049ee89c3a427773943c5 00:47:24 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-metadata.git /tmp/pip-install-u06_qo0z/omero-metadata_20aeb8916cb049ee89c3a427773943c5 00:47:25 Resolved https://github.com/snoopycrimecop/omero-metadata.git to commit 2567cc7b6399c19d53b610e2dbbdbcc7a696cadb 00:47:25 Installing build dependencies: started 00:47:26 Installing build dependencies: finished with status 'done' 00:47:26 Getting requirements to build wheel: started 00:47:26 Getting requirements to build wheel: finished with status 'done' 00:47:26 Preparing metadata (pyproject.toml): started 00:47:27 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:27 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (5.22.1) 00:47:27 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (6.0.3) 00:47:27 Requirement already satisfied: jinja2 in ./.venv3/lib64/python3.11/site-packages (from omero-metadata) (3.1.6) 00:47:27 Collecting pandas (from omero-metadata) 00:47:27 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 00:47:27 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.4.4) 00:47:27 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (1.0.0) 00:47:27 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.4.4) 00:47:27 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (12.2.0) 00:47:27 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.6.5) 00:47:27 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (2.33.1) 00:47:27 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-metadata) (3.2.0) 00:47:27 Requirement already satisfied: MarkupSafe>=2.0 in ./.venv3/lib64/python3.11/site-packages (from jinja2->omero-metadata) (3.0.3) 00:47:27 Collecting python-dateutil>=2.8.2 (from pandas->omero-metadata) 00:47:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) 00:47:27 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil>=2.8.2->pandas->omero-metadata) (1.17.0) 00:47:27 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.4.7) 00:47:27 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (3.13) 00:47:27 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2.6.3) 00:47:27 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-metadata) (2026.4.22) 00:47:27 Using cached pandas-3.0.2-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (11.3 MB) 00:47:27 Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) 00:47:27 Building wheels for collected packages: omero-metadata 00:47:27 Building wheel for omero-metadata (pyproject.toml): started 00:47:27 Building wheel for omero-metadata (pyproject.toml): finished with status 'done' 00:47:27 Created wheel for omero-metadata: filename=omero_metadata-0.13.1.dev0-py3-none-any.whl size=39373 sha256=e5b3655d272fe4adaf7fcdc389543d2482b4dfc358a2e859ad3e61bb624e47fd 00:47:27 Stored in directory: /tmp/pip-ephem-wheel-cache-kbgqcayu/wheels/6b/49/26/d56ff0fc3b918823c05ff86cc0686c3a577289ddc39151269b 00:47:27 Successfully built omero-metadata 00:47:27 Installing collected packages: python-dateutil, pandas, omero-metadata 00:47:31 00:47:31 Successfully installed omero-metadata-0.13.1.dev0 pandas-3.0.2 python-dateutil-2.9.0.post0 00:47:32 + pip install git+https://github.com/snoopycrimecop/omero-cli-render.git@merge_ci#egg=omero-cli-render 00:47:32 Collecting omero-cli-render 00:47:32 Cloning https://github.com/snoopycrimecop/omero-cli-render.git (to revision merge_ci) to /tmp/pip-install-sz4n2rll/omero-cli-render_42e35bc166564f4a8864078573304b23 00:47:32 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-render.git /tmp/pip-install-sz4n2rll/omero-cli-render_42e35bc166564f4a8864078573304b23 00:47:33 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:33 Switched to a new branch 'merge_ci' 00:47:33 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:33 Resolved https://github.com/snoopycrimecop/omero-cli-render.git to commit 1fd51331e885d3a7cdb750cd5b2f6c6ce64fd303 00:47:33 Installing build dependencies: started 00:47:34 Installing build dependencies: finished with status 'done' 00:47:34 Getting requirements to build wheel: started 00:47:34 Getting requirements to build wheel: finished with status 'done' 00:47:34 Preparing metadata (pyproject.toml): started 00:47:34 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:34 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (6.0.3) 00:47:34 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-render) (5.22.1) 00:47:34 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.4.4) 00:47:34 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (1.0.0) 00:47:34 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.4.4) 00:47:34 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (12.2.0) 00:47:34 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.6.5) 00:47:34 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (2.33.1) 00:47:34 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-render) (3.2.0) 00:47:34 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.4.7) 00:47:34 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (3.13) 00:47:34 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2.6.3) 00:47:34 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-cli-render) (2026.4.22) 00:47:34 Building wheels for collected packages: omero-cli-render 00:47:34 Building wheel for omero-cli-render (pyproject.toml): started 00:47:35 Building wheel for omero-cli-render (pyproject.toml): finished with status 'done' 00:47:35 Created wheel for omero-cli-render: filename=omero_cli_render-0.8.2.dev0-py3-none-any.whl size=19839 sha256=a251f52a5a2b3619547db26f0eab43595ec35505d25736654a23eb232768607c 00:47:35 Stored in directory: /tmp/pip-ephem-wheel-cache-91y9bokn/wheels/cc/67/86/ff54ee10a8ea8ae7a21cceb878741010ef1de4a7d93df129ee 00:47:35 Successfully built omero-cli-render 00:47:35 Installing collected packages: omero-cli-render 00:47:35 Successfully installed omero-cli-render-0.8.2.dev0 00:47:35 + pip install git+https://github.com/snoopycrimecop/omero-cli-duplicate.git@merge_ci#egg=omero-cli-duplicate 00:47:35 Collecting omero-cli-duplicate 00:47:35 Cloning https://github.com/snoopycrimecop/omero-cli-duplicate.git (to revision merge_ci) to /tmp/pip-install-u9o6v7j7/omero-cli-duplicate_b7b6ebcc2b3546c7bfb02064fa24d9bd 00:47:35 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-duplicate.git /tmp/pip-install-u9o6v7j7/omero-cli-duplicate_b7b6ebcc2b3546c7bfb02064fa24d9bd 00:47:36 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:36 Switched to a new branch 'merge_ci' 00:47:36 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:36 Resolved https://github.com/snoopycrimecop/omero-cli-duplicate.git to commit 066e07eca237d5780f4e2f8ac0a8b5a40b85daec 00:47:36 Installing build dependencies: started 00:47:39 Installing build dependencies: finished with status 'done' 00:47:39 Getting requirements to build wheel: started 00:47:39 Getting requirements to build wheel: finished with status 'done' 00:47:39 Preparing metadata (pyproject.toml): started 00:47:39 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:39 Requirement already satisfied: omero-py>=5.8 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-duplicate) (5.22.1) 00:47:39 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.4.4) 00:47:39 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (1.0.0) 00:47:39 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.4.4) 00:47:39 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (12.2.0) 00:47:39 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (6.0.3) 00:47:39 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.6.5) 00:47:39 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (2.33.1) 00:47:39 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.8->omero-cli-duplicate) (3.2.0) 00:47:39 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.4.7) 00:47:39 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (3.13) 00:47:39 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2.6.3) 00:47:39 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.8->omero-cli-duplicate) (2026.4.22) 00:47:39 Building wheels for collected packages: omero-cli-duplicate 00:47:39 Building wheel for omero-cli-duplicate (pyproject.toml): started 00:47:39 Building wheel for omero-cli-duplicate (pyproject.toml): finished with status 'done' 00:47:39 Created wheel for omero-cli-duplicate: filename=omero_cli_duplicate-0.4.1.dev0-py3-none-any.whl size=11539 sha256=e7eb27665dd8251518f5b6707bb6ae531546fc1003707318048bcec627d51974 00:47:39 Stored in directory: /tmp/pip-ephem-wheel-cache-5ylttan5/wheels/28/e4/77/20667ec1be487a1994d60f59ce11eeba2ac0c8c34aea209b46 00:47:39 Successfully built omero-cli-duplicate 00:47:39 Installing collected packages: omero-cli-duplicate 00:47:39 Successfully installed omero-cli-duplicate-0.4.1.dev0 00:47:40 + pip install git+https://github.com/snoopycrimecop/omero-cli-zarr.git@merge_ci#egg=omero-cli-zarr 00:47:40 Collecting omero-cli-zarr 00:47:40 Cloning https://github.com/snoopycrimecop/omero-cli-zarr.git (to revision merge_ci) to /tmp/pip-install-sx7ljywy/omero-cli-zarr_8d41ad424e464b68830a7c60fc5670f1 00:47:40 Running command git clone --filter=blob:none --quiet https://github.com/snoopycrimecop/omero-cli-zarr.git /tmp/pip-install-sx7ljywy/omero-cli-zarr_8d41ad424e464b68830a7c60fc5670f1 00:47:41 Running command git checkout -b merge_ci --track origin/merge_ci 00:47:41 Switched to a new branch 'merge_ci' 00:47:41 branch 'merge_ci' set up to track 'origin/merge_ci'. 00:47:41 Resolved https://github.com/snoopycrimecop/omero-cli-zarr.git to commit f0817329c3df044c74baa9f6732fc80d339be002 00:47:41 Installing build dependencies: started 00:47:42 Installing build dependencies: finished with status 'done' 00:47:42 Getting requirements to build wheel: started 00:47:42 Getting requirements to build wheel: finished with status 'done' 00:47:42 Installing backend dependencies: started 00:47:43 Installing backend dependencies: finished with status 'done' 00:47:43 Preparing metadata (pyproject.toml): started 00:47:43 Preparing metadata (pyproject.toml): finished with status 'done' 00:47:43 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-cli-zarr) (5.22.1) 00:47:43 Collecting ome-zarr>=0.13.0 (from omero-cli-zarr) 00:47:44 Using cached ome_zarr-0.16.0-py3-none-any.whl.metadata (2.9 kB) 00:47:44 Requirement already satisfied: numpy in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.4.4) 00:47:44 Collecting dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached dask-2026.3.0-py3-none-any.whl.metadata (3.9 kB) 00:47:44 Collecting zarr>=3.0.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached zarr-3.1.6-py3-none-any.whl.metadata (8.6 kB) 00:47:44 Collecting fsspec!=2021.07.0,!=2023.9.0,>=0.8 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached fsspec-2026.3.0-py3-none-any.whl.metadata (10 kB) 00:47:44 Collecting aiohttp (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (8.1 kB) 00:47:44 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from ome-zarr>=0.13.0->omero-cli-zarr) (2.33.1) 00:47:44 Collecting scikit-image>=0.19.0 (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (15 kB) 00:47:44 Collecting toolz (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached toolz-1.1.0-py3-none-any.whl.metadata (5.1 kB) 00:47:44 Collecting rangehttpserver (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl.metadata (769 bytes) 00:47:44 Collecting Deprecated (from ome-zarr>=0.13.0->omero-cli-zarr) 00:47:44 Using cached deprecated-1.3.1-py2.py3-none-any.whl.metadata (5.9 kB) 00:47:45 Collecting click>=8.1 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached click-8.3.3-py3-none-any.whl.metadata (2.6 kB) 00:47:45 Collecting cloudpickle>=3.0.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached cloudpickle-3.1.2-py3-none-any.whl.metadata (7.1 kB) 00:47:45 Requirement already satisfied: packaging>=20.0 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (26.2) 00:47:45 Collecting partd>=1.4.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached partd-1.4.2-py3-none-any.whl.metadata (4.6 kB) 00:47:45 Requirement already satisfied: pyyaml>=5.3.1 in ./.venv3/lib64/python3.11/site-packages (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) (6.0.3) 00:47:45 Collecting importlib_metadata>=4.13.0 (from dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached importlib_metadata-9.0.0-py3-none-any.whl.metadata (4.5 kB) 00:47:45 Collecting s3fs>2024.2.0 (from fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached s3fs-2026.3.0-py3-none-any.whl.metadata (1.2 kB) 00:47:45 Collecting zipp>=3.20 (from importlib_metadata>=4.13.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached zipp-3.23.1-py3-none-any.whl.metadata (3.6 kB) 00:47:45 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.4.4) 00:47:45 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (1.0.0) 00:47:45 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (12.2.0) 00:47:45 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.6.5) 00:47:45 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-cli-zarr) (3.2.0) 00:47:45 Collecting locket (from partd>=1.4.0->dask!=2025.12.*,!=2026.1.*,!=2026.2.*,>=2025.2.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached locket-1.0.0-py2.py3-none-any.whl.metadata (2.8 kB) 00:47:45 Collecting aiobotocore<4.0.0,>=2.19.0 (from s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached aiobotocore-3.5.0-py3-none-any.whl.metadata (27 kB) 00:47:45 Collecting aioitertools<1.0.0,>=0.5.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached aioitertools-0.13.0-py3-none-any.whl.metadata (3.3 kB) 00:47:45 Collecting botocore<1.42.92,>=1.42.90 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached botocore-1.42.91-py3-none-any.whl.metadata (5.9 kB) 00:47:45 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in ./.venv3/lib64/python3.11/site-packages (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.9.0.post0) 00:47:45 Collecting jmespath<2.0.0,>=0.7.1 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached jmespath-1.1.0-py3-none-any.whl.metadata (7.6 kB) 00:47:45 Collecting multidict<7.0.0,>=6.0.0 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:45 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (5.3 kB) 00:47:46 Collecting wrapt<3.0.0,>=1.10.10 (from aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (7.4 kB) 00:47:46 Collecting aiohappyeyeballs>=2.5.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl.metadata (5.9 kB) 00:47:46 Collecting aiosignal>=1.4.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached aiosignal-1.4.0-py3-none-any.whl.metadata (3.7 kB) 00:47:46 Collecting attrs>=17.3.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached attrs-26.1.0-py3-none-any.whl.metadata (8.8 kB) 00:47:46 Collecting frozenlist>=1.1.1 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl.metadata (20 kB) 00:47:46 Collecting propcache>=0.2.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (13 kB) 00:47:46 Collecting yarl<2.0,>=1.17.0 (from aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (79 kB) 00:47:46 Requirement already satisfied: urllib3!=2.2.0,<3,>=1.25.4 in ./.venv3/lib64/python3.11/site-packages (from botocore<1.42.92,>=1.42.90->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (2.6.3) 00:47:46 Requirement already satisfied: six>=1.5 in ./.venv3/lib64/python3.11/site-packages (from python-dateutil<3.0.0,>=2.1->aiobotocore<4.0.0,>=2.19.0->s3fs>2024.2.0->fsspec[s3]!=2021.07.0,!=2023.9.0,>=0.8->ome-zarr>=0.13.0->omero-cli-zarr) (1.17.0) 00:47:46 Requirement already satisfied: idna>=2.0 in ./.venv3/lib64/python3.11/site-packages (from yarl<2.0,>=1.17.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) (3.13) 00:47:46 Collecting typing-extensions>=4.2 (from aiosignal>=1.4.0->aiohttp->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:46 Using cached typing_extensions-4.15.0-py3-none-any.whl.metadata (3.3 kB) 00:47:47 Collecting scipy>=1.11.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (62 kB) 00:47:47 Collecting networkx>=3.0 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached networkx-3.6.1-py3-none-any.whl.metadata (6.8 kB) 00:47:47 Collecting imageio!=2.35.0,>=2.33 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached imageio-2.37.3-py3-none-any.whl.metadata (9.7 kB) 00:47:47 Collecting tifffile>=2022.8.12 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached tifffile-2026.3.3-py3-none-any.whl.metadata (31 kB) 00:47:47 Collecting lazy-loader>=0.4 (from scikit-image>=0.19.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached lazy_loader-0.5-py3-none-any.whl.metadata (5.9 kB) 00:47:47 Collecting donfig>=0.8 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached donfig-0.8.1.post1-py3-none-any.whl.metadata (5.0 kB) 00:47:47 Collecting google-crc32c>=1.5 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (1.7 kB) 00:47:47 Collecting numcodecs>=0.14 (from zarr>=3.0.0->ome-zarr>=0.13.0->omero-cli-zarr) 00:47:47 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl.metadata (3.4 kB) 00:47:47 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (3.4.7) 00:47:47 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->ome-zarr>=0.13.0->omero-cli-zarr) (2026.4.22) 00:47:47 Using cached ome_zarr-0.16.0-py3-none-any.whl (46 kB) 00:47:47 Using cached dask-2026.3.0-py3-none-any.whl (1.5 MB) 00:47:47 Using cached click-8.3.3-py3-none-any.whl (110 kB) 00:47:47 Using cached cloudpickle-3.1.2-py3-none-any.whl (22 kB) 00:47:47 Using cached fsspec-2026.3.0-py3-none-any.whl (202 kB) 00:47:47 Using cached importlib_metadata-9.0.0-py3-none-any.whl (27 kB) 00:47:47 Using cached partd-1.4.2-py3-none-any.whl (18 kB) 00:47:47 Using cached s3fs-2026.3.0-py3-none-any.whl (32 kB) 00:47:47 Using cached aiobotocore-3.5.0-py3-none-any.whl (88 kB) 00:47:47 Using cached aiohttp-3.13.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (1.8 MB) 00:47:47 Using cached aioitertools-0.13.0-py3-none-any.whl (24 kB) 00:47:47 Using cached botocore-1.42.91-py3-none-any.whl (14.9 MB) 00:47:47 Using cached jmespath-1.1.0-py3-none-any.whl (20 kB) 00:47:47 Using cached multidict-6.7.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (246 kB) 00:47:47 Using cached wrapt-2.1.2-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (114 kB) 00:47:47 Using cached yarl-1.23.0-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (102 kB) 00:47:47 Using cached aiohappyeyeballs-2.6.1-py3-none-any.whl (15 kB) 00:47:47 Using cached aiosignal-1.4.0-py3-none-any.whl (7.5 kB) 00:47:47 Using cached attrs-26.1.0-py3-none-any.whl (67 kB) 00:47:47 Using cached frozenlist-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux_2_28_x86_64.manylinux_2_5_x86_64.whl (231 kB) 00:47:47 Using cached propcache-0.4.1-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (210 kB) 00:47:47 Using cached scikit_image-0.26.0-cp311-cp311-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (13.7 MB) 00:47:47 Using cached imageio-2.37.3-py3-none-any.whl (317 kB) 00:47:47 Using cached lazy_loader-0.5-py3-none-any.whl (8.0 kB) 00:47:47 Using cached networkx-3.6.1-py3-none-any.whl (2.1 MB) 00:47:47 Using cached scipy-1.17.1-cp311-cp311-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (35.3 MB) 00:47:47 Using cached tifffile-2026.3.3-py3-none-any.whl (243 kB) 00:47:47 Using cached toolz-1.1.0-py3-none-any.whl (58 kB) 00:47:47 Using cached typing_extensions-4.15.0-py3-none-any.whl (44 kB) 00:47:47 Using cached zarr-3.1.6-py3-none-any.whl (295 kB) 00:47:47 Using cached donfig-0.8.1.post1-py3-none-any.whl (21 kB) 00:47:47 Using cached google_crc32c-1.8.0-cp311-cp311-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (33 kB) 00:47:47 Using cached numcodecs-0.16.5-cp311-cp311-manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_28_x86_64.whl (9.1 MB) 00:47:47 Using cached zipp-3.23.1-py3-none-any.whl (10 kB) 00:47:47 Using cached deprecated-1.3.1-py2.py3-none-any.whl (11 kB) 00:47:47 Using cached locket-1.0.0-py2.py3-none-any.whl (4.4 kB) 00:47:47 Using cached rangehttpserver-1.4.0-py2.py3-none-any.whl (7.8 kB) 00:47:47 Building wheels for collected packages: omero-cli-zarr 00:47:47 Building wheel for omero-cli-zarr (pyproject.toml): started 00:47:48 Building wheel for omero-cli-zarr (pyproject.toml): finished with status 'done' 00:47:48 Created wheel for omero-cli-zarr: filename=omero_cli_zarr-0.5.5.dev162+gf081732-py3-none-any.whl size=38290 sha256=6e2554e8cdb7eb72e44eed9c220dc47e2f020b43a3eb8c82bed4e82540ef87eb 00:47:48 Stored in directory: /tmp/pip-ephem-wheel-cache-kc2kli0a/wheels/23/9b/a6/58188c5a16d0876457bd9f2c6a2fb9759c671db67032a0e529 00:47:48 Successfully built omero-cli-zarr 00:47:48 Installing collected packages: rangehttpserver, zipp, wrapt, typing-extensions, toolz, tifffile, scipy, propcache, networkx, multidict, locket, lazy-loader, jmespath, imageio, google-crc32c, fsspec, frozenlist, donfig, cloudpickle, click, attrs, aioitertools, aiohappyeyeballs, yarl, scikit-image, partd, numcodecs, importlib_metadata, Deprecated, botocore, aiosignal, zarr, dask, aiohttp, aiobotocore, s3fs, ome-zarr, omero-cli-zarr 00:47:57 00:47:57 Successfully installed Deprecated-1.3.1 aiobotocore-3.5.0 aiohappyeyeballs-2.6.1 aiohttp-3.13.5 aioitertools-0.13.0 aiosignal-1.4.0 attrs-26.1.0 botocore-1.42.91 click-8.3.3 cloudpickle-3.1.2 dask-2026.3.0 donfig-0.8.1.post1 frozenlist-1.8.0 fsspec-2026.3.0 google-crc32c-1.8.0 imageio-2.37.3 importlib_metadata-9.0.0 jmespath-1.1.0 lazy-loader-0.5 locket-1.0.0 multidict-6.7.1 networkx-3.6.1 numcodecs-0.16.5 ome-zarr-0.16.0 omero-cli-zarr-0.5.5.dev162+gf081732 partd-1.4.2 propcache-0.4.1 rangehttpserver-1.4.0 s3fs-2026.3.0 scikit-image-0.26.0 scipy-1.17.1 tifffile-2026.3.3 toolz-1.1.0 typing-extensions-4.15.0 wrapt-2.1.2 yarl-1.23.0 zarr-3.1.6 zipp-3.23.1 00:47:57 + pip install omero-certificates 00:47:58 Collecting omero-certificates 00:47:58 Using cached omero_certificates-0.4.0-py3-none-any.whl.metadata (3.3 kB) 00:47:58 Requirement already satisfied: omero-py>=5.6.0 in ./.venv3/lib64/python3.11/site-packages (from omero-certificates) (5.22.1) 00:47:58 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.4.4) 00:47:58 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (1.0.0) 00:47:58 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.4.4) 00:47:58 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (12.2.0) 00:47:58 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (6.0.3) 00:47:58 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.6.5) 00:47:58 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (2.33.1) 00:47:58 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.6.0->omero-certificates) (3.2.0) 00:47:58 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.4.7) 00:47:58 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (3.13) 00:47:58 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2.6.3) 00:47:58 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.6.0->omero-certificates) (2026.4.22) 00:47:58 Using cached omero_certificates-0.4.0-py3-none-any.whl (11 kB) 00:47:58 Installing collected packages: omero-certificates 00:47:58 Successfully installed omero-certificates-0.4.0 00:47:58 + for x in *.tar.gz 00:47:58 + pip install -U omero_dropbox-5.7.1.dev0.tar.gz 00:47:58 Processing ./omero_dropbox-5.7.1.dev0.tar.gz 00:47:58 Installing build dependencies: started 00:47:59 Installing build dependencies: finished with status 'done' 00:47:59 Getting requirements to build wheel: started 00:47:59 Getting requirements to build wheel: finished with status 'done' 00:47:59 Preparing metadata (pyproject.toml): started 00:48:00 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:00 Requirement already satisfied: omero-py in ./.venv3/lib64/python3.11/site-packages (from omero-dropbox==5.7.1.dev0) (5.22.1) 00:48:00 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.4.4) 00:48:00 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (1.0.0) 00:48:00 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.4.4) 00:48:00 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (12.2.0) 00:48:00 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (6.0.3) 00:48:00 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.6.5) 00:48:00 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (2.33.1) 00:48:00 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py->omero-dropbox==5.7.1.dev0) (3.2.0) 00:48:00 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.4.7) 00:48:00 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (3.13) 00:48:00 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2.6.3) 00:48:00 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py->omero-dropbox==5.7.1.dev0) (2026.4.22) 00:48:00 Building wheels for collected packages: omero-dropbox 00:48:00 Building wheel for omero-dropbox (pyproject.toml): started 00:48:00 Building wheel for omero-dropbox (pyproject.toml): finished with status 'done' 00:48:00 Created wheel for omero-dropbox: filename=omero_dropbox-5.7.1.dev0-py3-none-any.whl size=49154 sha256=2e0d483da218fcc99233f9dbda8173ec165f4901823365aaa644341a14030040 00:48:00 Stored in directory: /home/omero/.cache/pip/wheels/97/54/5f/8dccf5c24b891c9bef25978dac72ee622eda35946855e06c92 00:48:00 Successfully built omero-dropbox 00:48:00 Installing collected packages: omero-dropbox 00:48:00 Successfully installed omero-dropbox-5.7.1.dev0 00:48:00 + for x in *.tar.gz 00:48:00 + pip install -U omero_marshal-0.9.2.dev0.tar.gz 00:48:00 Processing ./omero_marshal-0.9.2.dev0.tar.gz 00:48:00 Installing build dependencies: started 00:48:01 Installing build dependencies: finished with status 'done' 00:48:01 Getting requirements to build wheel: started 00:48:01 Getting requirements to build wheel: finished with status 'done' 00:48:01 Preparing metadata (pyproject.toml): started 00:48:02 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:02 Building wheels for collected packages: omero_marshal 00:48:02 Building wheel for omero_marshal (pyproject.toml): started 00:48:02 Building wheel for omero_marshal (pyproject.toml): finished with status 'done' 00:48:02 Created wheel for omero_marshal: filename=omero_marshal-0.9.2.dev0-py3-none-any.whl size=88131 sha256=06b17a27162322460bc2d07dcaf7b456e846ed8bec87a70a8b244d7434379c37 00:48:02 Stored in directory: /home/omero/.cache/pip/wheels/38/19/f8/b7cbc5aa44dc10bd3c24777f40a22cf6ed1baeac622bbf8230 00:48:02 Successfully built omero_marshal 00:48:02 Installing collected packages: omero_marshal 00:48:02 Successfully installed omero_marshal-0.9.2.dev0 00:48:02 + for x in *.tar.gz 00:48:02 + pip install -U omero_py-5.22.2.dev0.tar.gz 00:48:03 Processing ./omero_py-5.22.2.dev0.tar.gz 00:48:03 Installing build dependencies: started 00:48:04 Installing build dependencies: finished with status 'done' 00:48:04 Getting requirements to build wheel: started 00:48:04 Getting requirements to build wheel: finished with status 'done' 00:48:04 Preparing metadata (pyproject.toml): started 00:48:04 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:04 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.4.4) 00:48:04 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (1.0.0) 00:48:04 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.4.4) 00:48:04 Requirement already satisfied: Pillow>=10.0.0 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (12.2.0) 00:48:04 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (6.0.3) 00:48:04 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.6.5) 00:48:04 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (2.33.1) 00:48:04 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-py==5.22.2.dev0) (3.2.0) 00:48:04 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.4.7) 00:48:04 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (3.13) 00:48:04 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2.6.3) 00:48:04 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py==5.22.2.dev0) (2026.4.22) 00:48:04 Building wheels for collected packages: omero-py 00:48:04 Building wheel for omero-py (pyproject.toml): started 00:48:05 Building wheel for omero-py (pyproject.toml): finished with status 'done' 00:48:05 Created wheel for omero-py: filename=omero_py-5.22.2.dev0-py3-none-any.whl size=2786692 sha256=d6d5141214fbf122d1626d49638dc0d67a868d5f31625d7d9bb4f3f6870b06ee 00:48:05 Stored in directory: /home/omero/.cache/pip/wheels/ec/3f/72/4027ca0a7faf1f66d4577cc07619b0497ac8e99396d43dd8fa 00:48:05 Successfully built omero-py 00:48:05 Installing collected packages: omero-py 00:48:05 Attempting uninstall: omero-py 00:48:05 Found existing installation: omero-py 5.22.1 00:48:05 Uninstalling omero-py-5.22.1: 00:48:06 Successfully uninstalled omero-py-5.22.1 00:48:08 Successfully installed omero-py-5.22.2.dev0 00:48:08 + for x in *.tar.gz 00:48:08 + pip install -U omero_scripts-5.10.1.dev0.tar.gz 00:48:08 Processing ./omero_scripts-5.10.1.dev0.tar.gz 00:48:08 Installing build dependencies: started 00:48:09 Installing build dependencies: finished with status 'done' 00:48:09 Getting requirements to build wheel: started 00:48:09 Getting requirements to build wheel: finished with status 'done' 00:48:09 Preparing metadata (pyproject.toml): started 00:48:10 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:10 Building wheels for collected packages: omero-scripts 00:48:10 Building wheel for omero-scripts (pyproject.toml): started 00:48:10 Building wheel for omero-scripts (pyproject.toml): finished with status 'done' 00:48:10 Created wheel for omero-scripts: filename=omero_scripts-5.10.1.dev0-py3-none-any.whl size=137001 sha256=b73f33f6cb9f3a218ee25641df6989274ed169acb7665234b1351eecbed584f3 00:48:10 Stored in directory: /home/omero/.cache/pip/wheels/42/27/9e/76575465f2b255db596bcfcfc1a50c113f5603b7dc93ec491e 00:48:10 Successfully built omero-scripts 00:48:10 Installing collected packages: omero-scripts 00:48:10 Successfully installed omero-scripts-5.10.1.dev0 00:48:10 + for x in *.tar.gz 00:48:10 + pip install -U omero_web-5.31.1.dev0.tar.gz 00:48:10 Processing ./omero_web-5.31.1.dev0.tar.gz 00:48:11 Installing build dependencies: started 00:48:11 Installing build dependencies: finished with status 'done' 00:48:11 Getting requirements to build wheel: started 00:48:12 Getting requirements to build wheel: finished with status 'done' 00:48:12 Preparing metadata (pyproject.toml): started 00:48:12 Preparing metadata (pyproject.toml): finished with status 'done' 00:48:12 Requirement already satisfied: omero-py>=5.19.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (5.22.2.dev0) 00:48:12 Collecting concurrent-log-handler>=0.9.20 (from omero-web==5.31.1.dev0) 00:48:12 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl.metadata (27 kB) 00:48:12 Collecting Django<5.3,>=5.2.9 (from omero-web==5.31.1.dev0) 00:48:12 Using cached django-5.2.13-py3-none-any.whl.metadata (4.1 kB) 00:48:12 Collecting django-pipeline>=4.1.0 (from omero-web==5.31.1.dev0) 00:48:12 Using cached django_pipeline-4.1.0-py3-none-any.whl.metadata (5.9 kB) 00:48:12 Collecting django-cors-headers==3.7.0 (from omero-web==5.31.1.dev0) 00:48:12 Using cached django_cors_headers-3.7.0-py3-none-any.whl.metadata (15 kB) 00:48:12 Collecting whitenoise>=5.3.0 (from omero-web==5.31.1.dev0) 00:48:12 Using cached whitenoise-6.12.0-py3-none-any.whl.metadata (3.7 kB) 00:48:12 Collecting gunicorn>=19.3 (from omero-web==5.31.1.dev0) 00:48:12 Using cached gunicorn-25.3.0-py3-none-any.whl.metadata (5.5 kB) 00:48:12 Requirement already satisfied: omero-marshal>=0.7.0 in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (0.9.2.dev0) 00:48:12 Requirement already satisfied: Pillow in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (12.2.0) 00:48:12 Collecting pytz (from omero-web==5.31.1.dev0) 00:48:12 Using cached pytz-2026.1.post1-py2.py3-none-any.whl.metadata (22 kB) 00:48:12 Requirement already satisfied: portalocker in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (3.2.0) 00:48:12 Requirement already satisfied: packaging in ./.venv3/lib64/python3.11/site-packages (from omero-web==5.31.1.dev0) (26.2) 00:48:12 Collecting importlib-resources (from omero-web==5.31.1.dev0) 00:48:12 Using cached importlib_resources-7.1.0-py3-none-any.whl.metadata (4.0 kB) 00:48:13 Collecting asgiref>=3.8.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0) 00:48:13 Using cached asgiref-3.11.1-py3-none-any.whl.metadata (9.3 kB) 00:48:13 Collecting sqlparse>=0.3.1 (from Django<5.3,>=5.2.9->omero-web==5.31.1.dev0) 00:48:13 Using cached sqlparse-0.5.5-py3-none-any.whl.metadata (4.7 kB) 00:48:13 Requirement already satisfied: setuptools in ./.venv3/lib64/python3.11/site-packages (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) (65.5.1) 00:48:13 Collecting wheel (from django-pipeline>=4.1.0->omero-web==5.31.1.dev0) 00:48:13 Using cached wheel-0.47.0-py3-none-any.whl.metadata (2.3 kB) 00:48:13 Requirement already satisfied: appdirs in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.4.4) 00:48:13 Requirement already satisfied: future in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (1.0.0) 00:48:13 Requirement already satisfied: numpy<3,>=2 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.4.4) 00:48:13 Requirement already satisfied: PyYAML in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (6.0.3) 00:48:13 Requirement already satisfied: zeroc-ice<3.7,>=3.6.5 in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.6.5) 00:48:13 Requirement already satisfied: requests in ./.venv3/lib64/python3.11/site-packages (from omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.33.1) 00:48:13 Requirement already satisfied: charset_normalizer<4,>=2 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.4.7) 00:48:13 Requirement already satisfied: idna<4,>=2.5 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (3.13) 00:48:13 Requirement already satisfied: urllib3<3,>=1.26 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2.6.3) 00:48:13 Requirement already satisfied: certifi>=2023.5.7 in ./.venv3/lib64/python3.11/site-packages (from requests->omero-py>=5.19.0->omero-web==5.31.1.dev0) (2026.4.22) 00:48:13 Using cached django_cors_headers-3.7.0-py3-none-any.whl (12 kB) 00:48:13 Using cached django-5.2.13-py3-none-any.whl (8.3 MB) 00:48:13 Using cached asgiref-3.11.1-py3-none-any.whl (24 kB) 00:48:13 Using cached concurrent_log_handler-0.9.29-py3-none-any.whl (32 kB) 00:48:13 Using cached django_pipeline-4.1.0-py3-none-any.whl (75 kB) 00:48:13 Using cached gunicorn-25.3.0-py3-none-any.whl (208 kB) 00:48:13 Using cached sqlparse-0.5.5-py3-none-any.whl (46 kB) 00:48:13 Using cached whitenoise-6.12.0-py3-none-any.whl (20 kB) 00:48:13 Using cached importlib_resources-7.1.0-py3-none-any.whl (37 kB) 00:48:13 Using cached pytz-2026.1.post1-py2.py3-none-any.whl (510 kB) 00:48:13 Using cached wheel-0.47.0-py3-none-any.whl (32 kB) 00:48:13 Building wheels for collected packages: omero-web 00:48:13 Building wheel for omero-web (pyproject.toml): started 00:48:14 Building wheel for omero-web (pyproject.toml): finished with status 'done' 00:48:14 Created wheel for omero-web: filename=omero_web-5.31.1.dev0-py3-none-any.whl size=2819315 sha256=e82abd1a05f4960d38e959fe6899ccf164893d89f783258aaa2caf26e828b921 00:48:14 Stored in directory: /home/omero/.cache/pip/wheels/48/a3/5b/968853abf49b64e1726fdb37874d77f08ddad2d06b53de06b3 00:48:14 Successfully built omero-web 00:48:14 Installing collected packages: pytz, whitenoise, wheel, sqlparse, importlib-resources, gunicorn, concurrent-log-handler, asgiref, django-pipeline, Django, django-cors-headers, omero-web 00:48:18 00:48:18 Successfully installed Django-5.2.13 asgiref-3.11.1 concurrent-log-handler-0.9.29 django-cors-headers-3.7.0 django-pipeline-4.1.0 gunicorn-25.3.0 importlib-resources-7.1.0 omero-web-5.31.1.dev0 pytz-2026.1.post1 sqlparse-0.5.5 wheel-0.47.0 whitenoise-6.12.0 00:48:18 + wget https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:18 Will not apply HSTS. The HSTS database must be a regular and non-world-writable file. 00:48:18 ERROR: could not open HSTS store at '/home/omero/.wget-hsts'. HSTS will be disabled. 00:48:18 --2026-04-25 00:48:18-- https://raw.githubusercontent.com/snoopycrimecop/omero-figure/merge_ci/omero_figure/scripts/omero/figure_scripts/Figure_To_Pdf.py 00:48:18 Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.111.133, 185.199.110.133, 185.199.109.133, ... 00:48:18 Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.111.133|:443... connected. 00:48:18 HTTP request sent, awaiting response... 200 OK 00:48:18 Length: 139337 (136K) [text/plain] 00:48:18 Saving to: ‘Figure_To_Pdf.py’ 00:48:18 00:48:18 0K .......... .......... .......... .......... .......... 36% 2.47M 0s 00:48:18 50K .......... .......... .......... .......... .......... 73% 8.97M 0s 00:48:18 100K .......... .......... .......... ...... 100% 4.34M=0.03s 00:48:18 00:48:18 2026-04-25 00:48:18 (3.98 MB/s) - ‘Figure_To_Pdf.py’ saved [139337/139337] 00:48:18 00:48:18 + chmod 755 Figure_To_Pdf.py 00:48:18 + mv Figure_To_Pdf.py /home/omero/workspace/OMERO-server/OMERO.server/lib/scripts/omero/figure_scripts 00:48:18 + omero config set omero.db.name OMERO-server 00:48:20 + omero config set omero.db.host pg 00:48:22 + omero config set omero.db.user postgres 00:48:24 + omero config set omero.data.dir /home/omero/omero-server-data 00:48:26 + omero config set omero.fs.repo.path %user%_%userId%/%thread%//%year%-%month%/%day%/%time% 00:48:28 + omero config set omero.db.poolsize 25 00:48:30 + omero config set omero.security.trustStore /etc/pki/ca-trust/extracted/java/cacerts 00:48:32 + omero config set omero.security.trustStorePassword changeit 00:48:34 + omero config set omero.mail.config true 00:48:36 + omero config set omero.server.nodedescriptors master:Blitz-0,Indexer-0,Processor-0,Storm,Tables-0 00:48:38 + omero config set omero.jvmcfg.append '--add-opens java.base/java.lang=ALL-UNNAMED' 00:48:40 + omero certificates 00:48:42 OpenSSL 3.5.1 1 Jul 2025 (Library: OpenSSL 3.5.1 1 Jul 2025) 00:48:42 certificates created: /home/omero/omero-server-data/certs/server.pem /home/omero/omero-server-data/certs/server.p12 00:48:42 + '[' false = true ']' 00:48:42 + echo 'Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade' 00:48:42 Skipping PURGE_DATA:CleanDbAndRepo. Check for DB upgrade 00:48:42 + omego db -vvv upgrade --serverdir /home/omero/workspace/OMERO-server/OMERO.server --dbname OMERO-server 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG dbcommand => upgrade 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG dbhost => localhost 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG dbname => OMERO-server 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG dbpass => omero 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG dbuser => omero 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG rootpass => omero 00:48:42 2026-04-25 00:48:42,883 [ omego.db] DEBUG serverdir => /home/omero/workspace/OMERO-server/OMERO.server 00:48:42 2026-04-25 00:48:42,883 [omego.extern] INFO Executing : omero version 00:48:44 OMERO.py version: 00:48:44 OMERO.server version: 00:48:44 5.6.3-594-2425036b14-ice36-b137 00:48:44 5.22.2.dev0 00:48:44 2026-04-25 00:48:44,921 [omego.extern] INFO Completed [2.038 s] 00:48:44 2026-04-25 00:48:44,921 [omego.extern] DEBUG Using omero CLI from omero 00:48:44 2026-04-25 00:48:44,921 [ omego.db] INFO DbAdmin: DbAdmin /home/omero/workspace/OMERO-server/OMERO.server ... 00:48:44 2026-04-25 00:48:44,921 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:44 2026-04-25 00:48:44,921 [omego.extern] INFO Executing : omero config get --show-password 00:48:47 2026-04-25 00:48:47,002 [omego.extern] INFO Completed [2.080 s] 00:48:47 2026-04-25 00:48:47,002 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:47 2026-04-25 00:48:47,002 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t --version 00:48:47 2026-04-25 00:48:47,008 [omego.extern] INFO Completed [0.005 s] 00:48:47 2026-04-25 00:48:47,008 [ omego.db] DEBUG stdout: b'psql (PostgreSQL) 16.11\n' 00:48:47 2026-04-25 00:48:47,008 [ omego.db] INFO psql version: psql (PostgreSQL) 16.11 00:48:47 00:48:47 2026-04-25 00:48:47,008 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:47 2026-04-25 00:48:47,008 [omego.extern] INFO Executing : omero config get --show-password 00:48:48 2026-04-25 00:48:48,968 [omego.extern] INFO Completed [1.961 s] 00:48:48 2026-04-25 00:48:48,969 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:48 2026-04-25 00:48:48,969 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c \conninfo 00:48:48 2026-04-25 00:48:48,978 [omego.extern] INFO Completed [0.009 s] 00:48:48 2026-04-25 00:48:48,978 [ omego.db] DEBUG stdout: b'You are connected to database "OMERO-server" as user "postgres" on host "pg" (address "172.18.0.4") at port "5432".\n' 00:48:48 2026-04-25 00:48:48,978 [ omego.db] DEBUG Executing query: SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:48 2026-04-25 00:48:48,978 [omego.extern] INFO Running [current environment]: omero config get --show-password 00:48:48 2026-04-25 00:48:48,978 [omego.extern] INFO Executing : omero config get --show-password 00:48:50 2026-04-25 00:48:50,994 [omego.extern] INFO Completed [2.016 s] 00:48:50 2026-04-25 00:48:50,995 [ omego.db] INFO Failed to lookup parameter omero.db.pass, using omero 00:48:50 2026-04-25 00:48:50,995 [omego.extern] INFO Executing [custom environment]: psql -v ON_ERROR_STOP=on -d OMERO-server -h pg -U postgres -w -A -t -c SELECT currentversion, currentpatch FROM dbpatch ORDER BY id DESC LIMIT 1 00:48:51 2026-04-25 00:48:51,005 [omego.extern] INFO Completed [0.010 s] 00:48:51 2026-04-25 00:48:51,005 [ omego.db] DEBUG stdout: b'OMERO5.4|0\n' 00:48:51 2026-04-25 00:48:51,005 [ omego.db] INFO Current omero db version: ('OMERO5.4', '0') 00:48:51 2026-04-25 00:48:51,006 [ omego.db] INFO Database is already at OMERO5.4__0 00:48:51 + export LANG=en_US.UTF-8 00:48:51 + LANG=en_US.UTF-8 00:48:51 + export LANGUAGE=en_US:en 00:48:51 + LANGUAGE=en_US:en 00:48:51 + export LC_ALL=en_US.UTF-8 00:48:51 + LC_ALL=en_US.UTF-8 00:48:51 + BUILD_ID=DONT_KILL_ME 00:48:51 + omero admin start 00:48:55 No descriptor given. Using etc/grid/default.xml 00:49:03 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/master 00:49:03 Initializing /home/omero/workspace/OMERO-server/OMERO.server/var/log 00:49:03 Creating /home/omero/workspace/OMERO-server/OMERO.server/var/registry 00:49:03 Waiting on startup. Use CTRL-C to exit 00:49:04 + omero admin waitup 00:49:06 Waiting on startup. Use CTRL-C to exit 00:49:06 + omero admin diagnostics 00:49:08 00:49:08 ================================================================================ 00:49:08 OMERO Diagnostics (admin) 00:49:08 ================================================================================ 00:49:08 00:49:08 Commands: java -version 17.0.17 (/usr/bin/java) 00:49:08 Commands: python -V 3.11.13 (/home/omero/workspace/OMERO-server/.venv3/bin/python) 00:49:08 Commands: icegridnode --version 3.6.5 (/opt/ice-3.6.5/bin/icegridnode) 00:49:08 Commands: icegridadmin --version 3.6.5 (/opt/ice-3.6.5/bin/icegridadmin) 00:49:08 Commands: psql --version 16.11 (/usr/bin/psql) 00:49:08 Commands: openssl version 3.5.11 (/usr/bin/openssl) 00:49:08 00:49:08 Component: OMERO.py 5.22.2.dev0 00:49:08 Component: OMERO.server 5.6.3-594-2425036b14-ice36-b137 00:49:08 00:49:08 Server: icegridnode running 00:49:08 Server: Blitz-0 active (pid = 43464, enabled) 00:49:08 Server: Indexer-0 activating (enabled) 00:49:08 Server: OMERO.Glacier2 active (pid = 43497, enabled) 00:49:08 Server: OMERO.IceStorm active (pid = 43515, enabled) 00:49:08 Server: Processor-0 active (pid = 43539, enabled) 00:49:08 Server: Tables-0 active (pid = 43526, enabled) 00:49:08 00:49:08 Log dir: /home/omero/workspace/OMERO-server/OMERO.server/var/log exists 00:49:08 Log files: Blitz-0.log 33.2 KB errors=0 warnings=1 00:49:08 Log files: DropBox.log n/a 00:49:08 Log files: FileServer.log n/a 00:49:08 Log files: Indexer-0.log 598 B 00:49:08 Log files: MonitorServer.log n/a 00:49:08 Log files: Processor-0.log 735 B 00:49:08 Log files: Tables-0.log 961 B 00:49:08 Log files: TestDropBox.log n/a 00:49:08 Log files: master.err empty 00:49:08 Log files: master.out 30.5 KB 00:49:08 Log files: Total size 0.07 MB 00:49:08 00:49:08 00:49:08 Environment:OMERO_HOME=(unset) 00:49:08 Environment:OMERODIR=/home/omero/workspace/OMERO-server/OMERO.server 00:49:08 Environment:OMERO_NODE=(unset) 00:49:08 Environment:OMERO_MASTER=(unset) 00:49:08 Environment:OMERO_USERDIR=(unset) 00:49:08 Environment:OMERO_TMPDIR=(unset) 00:49:08 Environment:PATH=/home/omero/workspace/OMERO-server/.venv3/bin:/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:08 Environment:PYTHONPATH=(unset) 00:49:08 Environment:ICE_HOME=/opt/ice-3.6.5 00:49:08 Environment:LD_LIBRARY_PATH=(unset) 00:49:08 Environment:DYLD_LIBRARY_PATH=(unset) 00:49:08 00:49:08 OMERO SSL port:4064 00:49:08 OMERO TCP port:4063 00:49:08 OMERO data dir:'/home/omero/omero-server-data' Exists? True Is writable? True 00:49:08 OMERO temp dir:'/home/omero/omero/tmp' Exists? True Is writable? True (Size: 0) 00:49:08 00:49:08 JVM settings: Blitz-${index} -Xmx7200m 00:49:08 JVM settings: Indexer-${index} -Xmx4800m 00:49:08 JVM settings: PixelData-${index} -Xmx7200m 00:49:08 JVM settings: Repository-${index} -Xmx4800m 00:49:08 00:49:08 Jar: lib/server/formats-api.jar Bio-Formats API 8.6.0-SNAPSHOT 25 April 2026 7c420a5ccf87c9bc3f857a0fbfd65b7452485997 00:49:08 Jar: lib/server/formats-bsd.jar BSD Bio-Formats readers and writers 8.6.0-SNAPSHOT 25 April 2026 7c420a5ccf87c9bc3f857a0fbfd65b7452485997 00:49:08 Jar: lib/server/formats-gpl.jar Bio-Formats library 8.6.0-SNAPSHOT 25 April 2026 7c420a5ccf87c9bc3f857a0fbfd65b7452485997 00:49:08 Jar: lib/server/ome-codecs.jar OME Codecs 1.1.4-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/ome-common.jar OME Common Java 6.2.2-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/ome-jai.jar OME JAI 0.1.6-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/ome-mdbtools.jar MDB Tools (Java port) 5.3.5-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/ome-poi.jar OME POI 5.3.11-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/ome-xml.jar OME XML library 6.5.4-SNAPSHOT 25 April 2026 4c236a6864b6764c0c99f30d8404cd5a59eabe28 00:49:08 Jar: lib/server/omero-blitz.jar jar 5.8.5-SNAPSHOT 00:49:08 Jar: lib/server/omero-common.jar jar 5.7.6-SNAPSHOT 00:49:08 Jar: lib/server/omero-gateway.jar jar 5.10.6-SNAPSHOT 00:49:08 Jar: lib/server/omero-model.jar jar 5.7.6-SNAPSHOT 00:49:08 Jar: lib/server/omero-renderer.jar jar 5.6.6-SNAPSHOT 00:49:08 Jar: lib/server/omero-romio.jar jar 5.8.6-SNAPSHOT 00:49:08 Jar: lib/server/omero-server.jar jar 5.7.5-SNAPSHOT 00:49:08 + deactivate 00:49:08 + '[' -n /opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin ']' 00:49:08 + PATH=/opt/ice-3.6.5/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin 00:49:08 + export PATH 00:49:08 + unset _OLD_VIRTUAL_PATH 00:49:08 + '[' -n '' ']' 00:49:08 + hash -r 00:49:08 + '[' -n '' ']' 00:49:08 + unset VIRTUAL_ENV 00:49:08 + unset VIRTUAL_ENV_PROMPT 00:49:08 + '[' '!' '' = nondestructive ']' 00:49:08 + unset -f deactivate 00:49:08 Finished: SUCCESS