Skip to content
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-image
The recommended git tool is: NONE
No credentials specified
 > git rev-parse --resolve-git-dir /home/omero/workspace/BIOFORMATS-image/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://github.com/pwalczysko/bio-formats-build # timeout=10
Pruning obsolete local branches
Fetching upstream changes from https://github.com/pwalczysko/bio-formats-build
 > git --version # timeout=10
 > git --version # 'git version 2.47.3'
 > git fetch --tags --force --progress --prune -- https://github.com/pwalczysko/bio-formats-build +refs/heads/*:refs/remotes/origin/* # timeout=10
 > git rev-parse origin/deb-sec^{commit} # timeout=10
Checking out Revision cf60ff8657e65932a147a7dccdbd820bd3ba1268 (origin/deb-sec)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f cf60ff8657e65932a147a7dccdbd820bd3ba1268 # timeout=10
Commit message: "Use Debian Bullseye snapshot for Docker build"
 > git rev-list --no-walk cf60ff8657e65932a147a7dccdbd820bd3ba1268 # timeout=10
Cleaning workspace
 > git rev-parse --verify HEAD # timeout=10
Resetting working tree
 > git reset --hard # timeout=10
 > git clean -fdx # timeout=10
[BIOFORMATS-image] $ /bin/bash -xe /tmp/jenkins2017166857591662858.sh
++ date +%u
+ ((  3 % 4 == 1  ))
++ date +%u
+ ((  3 % 4 == 2  ))
++ date +%u
+ ((  3 % 4 == 3  ))
+ BASE_IMAGE=openjdk:25-ea-17-jdk-slim-bullseye
+ sudo docker pull openjdk:25-ea-17-jdk-slim-bullseye
25-ea-17-jdk-slim-bullseye: Pulling from library/openjdk
Digest: sha256:a61e1771832254508c465c4e0ca691256b5c2f14acdbea89cd3cd58c73c99586
Status: Image is up to date for openjdk:25-ea-17-jdk-slim-bullseye
docker.io/library/openjdk:25-ea-17-jdk-slim-bullseye
+ TAG=snoopycrimecop/bioformats:merge_ci
+ sudo docker build -t snoopycrimecop/bioformats:merge_ci . --build-arg BUILD_IMAGE=openjdk:25-ea-17-jdk-slim-bullseye
#0 building with "default" instance using docker driver

#1 [internal] load build definition from Dockerfile
#1 transferring dockerfile: 1.50kB done
#1 DONE 0.0s

#2 [internal] load metadata for docker.io/library/openjdk:25-ea-17-jdk-slim-bullseye
#2 DONE 0.0s

#3 [internal] load .dockerignore
#3 transferring context: 2B done
#3 DONE 0.0s

#4 [ 1/15] FROM docker.io/library/openjdk:25-ea-17-jdk-slim-bullseye
#4 DONE 0.0s

#5 [internal] load build context
#5 transferring context: 49.87kB 0.0s done
#5 DONE 0.0s

#6 [ 2/15] RUN printf '%s\n'     'deb http://snapshot.debian.org/archive/debian/20260419T000000Z bullseye main'     'deb http://snapshot.debian.org/archive/debian-security/20260419T000000Z bullseye-security main'     'deb http://snapshot.debian.org/archive/debian/20260419T000000Z bullseye-updates main'     > /etc/apt/sources.list
#6 CACHED

#7 [ 3/15] RUN apt-get -o Acquire::Check-Valid-Until=false -q update && apt-get -qy install maven    ant    git    python3-venv
#7 CACHED

#8 [ 4/15] RUN id 1000 || useradd -u 1000 -ms /bin/bash build
#8 CACHED

#9 [ 5/15] COPY --chown=1000:1000 . /bio-formats-build
#9 DONE 0.2s

#10 [ 6/15] WORKDIR /bio-formats-build
#10 DONE 0.1s

#11 [ 7/15] RUN git submodule update --init
#11 0.362 Submodule 'ZarrReader' (https://github.com/ome/ZarrReader.git) registered for path 'ZarrReader'
#11 0.363 Submodule 'bio-formats-documentation' (https://github.com/ome/bio-formats-documentation.git) registered for path 'bio-formats-documentation'
#11 0.364 Submodule 'bio-formats-examples' (https://github.com/ome/bio-formats-examples.git) registered for path 'bio-formats-examples'
#11 0.364 Submodule 'bioformats' (https://github.com/openmicroscopy/bioformats.git) registered for path 'bioformats'
#11 0.365 Submodule 'ome-codecs' (https://github.com/ome/ome-codecs.git) registered for path 'ome-codecs'
#11 0.365 Submodule 'ome-common-java' (https://github.com/ome/ome-common-java.git) registered for path 'ome-common-java'
#11 0.366 Submodule 'ome-jai' (https://github.com/ome/ome-jai.git) registered for path 'ome-jai'
#11 0.367 Submodule 'ome-mdbtools' (https://github.com/ome/ome-mdbtools.git) registered for path 'ome-mdbtools'
#11 0.367 Submodule 'ome-metakit' (https://github.com/ome/ome-metakit.git) registered for path 'ome-metakit'
#11 0.368 Submodule 'ome-model' (https://github.com/ome/ome-model.git) registered for path 'ome-model'
#11 0.368 Submodule 'ome-poi' (https://github.com/ome/ome-poi.git) registered for path 'ome-poi'
#11 0.369 Submodule 'ome-stubs' (https://github.com/ome/ome-stubs.git) registered for path 'ome-stubs'
#11 0.375 Cloning into '/bio-formats-build/ZarrReader'...
#11 1.291 Cloning into '/bio-formats-build/bio-formats-documentation'...
#11 3.352 Cloning into '/bio-formats-build/bio-formats-examples'...
#11 4.194 Cloning into '/bio-formats-build/bioformats'...
#11 26.62 Cloning into '/bio-formats-build/ome-codecs'...
#11 27.47 Cloning into '/bio-formats-build/ome-common-java'...
Build was aborted
Aborted by devspace
Finished: ABORTED