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Started by upstream project "BIOFORMATS-test-repo" build number 95
originally caused by:
 Started by upstream project "Trigger" build number 106
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins3129639200758822299.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_14629_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test

test-automated:
   [testng] File leak detector installed
   [testng] 01:39:21,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:39:21,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
   [testng] 01:39:21,981 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:39:21,982 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:39:21,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:39:21,982 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:39:21,983 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:39:22,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:39:22,209 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:39:22,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:39:22,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:39:22,244 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:39:22,244 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:39:22,244 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:39:22,245 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:39:22,245 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
   [testng] 01:39:22,246 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
   [testng] 01:39:22,246 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 263 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-06-17 01:39:22,256] [main] java.version = 1.8.0_342
   [testng] 01:39:22,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:39:22,259 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:22,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-06-17_01-39-22.log]
   [testng] 01:39:22,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
   [testng] [2024-06-17 01:39:22,306] [main] testng.directory = /data
   [testng] [2024-06-17 01:39:22,306] [main] testng.configDirectory = /config
   [testng] [2024-06-17 01:39:22,318] [main] testng.multiplier = 1.0
   [testng] [2024-06-17 01:39:22,318] [main] testng.in-memory = false
   [testng] [2024-06-17 01:39:22,318] [main] testng.allow-missing = false
   [testng] [2024-06-17 01:39:22,318] [main] user.language = fr
   [testng] [2024-06-17 01:39:22,318] [main] user.country = FR
   [testng] [2024-06-17 01:39:22,318] [main] Maximum heap size = 13653 MB
   [testng] Scanning for files...
   [testng] [2024-06-17 01:39:24,674] [main] ----------------------------------------
   [testng] [2024-06-17 01:39:24,674] [main] Total files: 20
   [testng] [2024-06-17 01:39:24,675] [main] Scan time: 2.356 s (117 ms/file)
   [testng] [2024-06-17 01:39:24,675] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-06-17 01:39:25,275] [pool-1-thread-1] Initializing /data/ascb/c191.st: 
   [testng] 01:39:25,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:39:25,275 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,276 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-06-17_01-39-25.log]
   [testng] 01:39:25,277 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1bf939de - End of configuration.
   [testng] [2024-06-17 01:39:25,297] [pool-1-thread-12] Initializing /data/dan/one.mrc: 
   [testng] 01:39:25,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:39:25,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,298 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-06-17_01-39-25.log]
   [testng] 01:39:25,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e07308c - End of configuration.
   [testng] [2024-06-17 01:39:25,310] [pool-1-thread-11] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 01:39:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:39:25,310 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-06-17_01-39-25.log]
   [testng] 01:39:25,311 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f9b60d1 - End of configuration.
   [testng] [2024-06-17 01:39:25,319] [pool-1-thread-10] Initializing /data/ascb/c191ali.mrc: 
   [testng] 01:39:25,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:39:25,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-06-17_01-39-25.log]
   [testng] 01:39:25,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cfc805d - End of configuration.
   [testng] [2024-06-17 01:39:25,334] [pool-1-thread-9] Initializing /data/strand/Series1_A.mrc: 
   [testng] 01:39:25,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:39:25,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-06-17_01-39-25.log]
   [testng] 01:39:25,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4221a259 - End of configuration.
   [testng] [2024-06-17 01:39:25,347] [pool-1-thread-8] Initializing /data/dan/two.mrc: 
   [testng] 01:39:25,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:39:25,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-06-17_01-39-25.log]
   [testng] 01:39:25,348 |-INFO in ch.qos.logback.core.sift.SiftProcessor@394ae44e - End of configuration.
   [testng] [2024-06-17 01:39:25,360] [pool-1-thread-7] Initializing /data/samples/golgi.mrc: 
   [testng] 01:39:25,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:39:25,361 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-06-17_01-39-25.log]
   [testng] 01:39:25,362 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c9625fc - End of configuration.
   [testng] [2024-06-17 01:39:25,376] [pool-1-thread-6] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] 01:39:25,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:39:25,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-06-17_01-39-25.log]
   [testng] 01:39:25,378 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47109be6 - End of configuration.
   [testng] [2024-06-17 01:39:25,391] [pool-1-thread-5] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 01:39:25,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:39:25,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,392 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-06-17_01-39-25.log]
   [testng] 01:39:25,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5718b32 - End of configuration.
   [testng] [2024-06-17 01:39:25,403] [pool-1-thread-4] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] 01:39:25,403 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:39:25,404 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,404 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-06-17_01-39-25.log]
   [testng] 01:39:25,405 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10857d79 - End of configuration.
   [testng] [2024-06-17 01:39:25,454] [pool-1-thread-3] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 01:39:25,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:39:25,455 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-06-17_01-39-25.log]
   [testng] 01:39:25,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a0e939b - End of configuration.
   [testng] [2024-06-17 01:39:25,488] [pool-1-thread-2] Initializing /data/ascb/514_9903.mrc: 
   [testng] 01:39:25,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:39:25,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:39:25,489 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-06-17_01-39-25.log]
   [testng] 01:39:25,490 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f10d0ef - End of configuration.
   [testng] [2024-06-17 01:39:27,312] [pool-1-thread-11] Initializing /data/dan/three.mrc: 
   [testng] [2024-06-17 01:39:27,322] [pool-1-thread-3] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] [2024-06-17 01:39:27,331] [pool-1-thread-7] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] [2024-06-17 01:39:27,339] [pool-1-thread-5] Initializing /data/jcb/thylakoid5.rec: 
   [testng] [2024-06-17 01:39:27,349] [pool-1-thread-10] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] [2024-06-17 01:39:27,359] [pool-1-thread-1] Initializing /data/ascb/cfa1071.mrc: 
   [testng] [2024-06-17 01:39:27,789] [pool-1-thread-7] Initializing /data/samples/1160.mrc: 
   [testng] [2024-06-17 01:39:28,438] [pool-1-thread-12] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 13 seconds
Finished: SUCCESS