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Started by upstream project "BIOFORMATS-test-repo" build number 110
originally caused by:
 Started by upstream project "Trigger" build number 123
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins9135618831535690440.sh
+ '[' mrc = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_17089_merge_ci -v /uod/idr/repos/curated/mrc:/data -v /uod/idr-scratch/merge-ci/curated/mrc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:33:33,407 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:33:33,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:33:33,408 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:33,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:33:33,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:33:33,410 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:33:33,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:33:33,410 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:33,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:33:33,411 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:33:33,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:33:33,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:33:33,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:33:33,570 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:33:33,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:33:33,591 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:33:33,597 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:33:33,597 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:33:33,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:33:33,597 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:33:33,597 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:33:33,598 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:33:33,598 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-07-03 01:33:33,607] [main] java.version = 17.0.2
   [testng] 01:33:33,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:33:33,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:33,649 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-07-03_01-33-33.log]
   [testng] 01:33:33,650 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-07-03 01:33:33,652] [main] testng.directory = /data
   [testng] [2024-07-03 01:33:33,652] [main] testng.configDirectory = /config
   [testng] [2024-07-03 01:33:33,661] [main] testng.multiplier = 1.0
   [testng] [2024-07-03 01:33:33,662] [main] testng.in-memory = false
   [testng] [2024-07-03 01:33:33,662] [main] testng.allow-missing = false
   [testng] [2024-07-03 01:33:33,662] [main] user.language = en
   [testng] [2024-07-03 01:33:33,662] [main] user.country = ${user.country}
   [testng] [2024-07-03 01:33:33,662] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-07-03 01:33:34,803] [main] ----------------------------------------
   [testng] [2024-07-03 01:33:34,803] [main] Total files: 20
   [testng] [2024-07-03 01:33:34,803] [main] Scan time: 1.141 s (57 ms/file)
   [testng] [2024-07-03 01:33:34,804] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 20 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-07-03 01:33:35,224] [pool-1-thread-1] Initializing /data/ticket-10073/wtjoin4.rec: 
   [testng] 01:33:35,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:33:35,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-07-03_01-33-35.log]
   [testng] 01:33:35,226 |-INFO in ch.qos.logback.core.sift.SiftProcessor@83aa785 - End of configuration.
   [testng] [2024-07-03 01:33:35,244] [pool-1-thread-12] Initializing /data/public/EMDB/EMD-2225/EMD-2225.map: 
   [testng] 01:33:35,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:33:35,256 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,257 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-07-03_01-33-35.log]
   [testng] 01:33:35,257 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37964476 - End of configuration.
   [testng] [2024-07-03 01:33:35,274] [pool-1-thread-11] Initializing /data/dan/three.mrc: 
   [testng] 01:33:35,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:33:35,274 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,275 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-07-03_01-33-35.log]
   [testng] 01:33:35,276 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a5df8e1 - End of configuration.
   [testng] [2024-07-03 01:33:35,295] [pool-1-thread-10] Initializing /data/ascb/cfa1071.mrc: 
   [testng] 01:33:35,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:33:35,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-07-03_01-33-35.log]
   [testng] 01:33:35,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ecc0a31 - End of configuration.
   [testng] [2024-07-03 01:33:35,315] [pool-1-thread-9] Initializing /data/bioformats2raw-198/test_uint8.mrc: 
   [testng] 01:33:35,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:33:35,315 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-07-03_01-33-35.log]
   [testng] 01:33:35,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@738a54ac - End of configuration.
   [testng] [2024-07-03 01:33:35,327] [pool-1-thread-8] Initializing /data/samples/agar-exttype/golgi-modified-AGAR.mrc: 
   [testng] 01:33:35,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:33:35,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-07-03_01-33-35.log]
   [testng] 01:33:35,329 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c74212c - End of configuration.
   [testng] [2024-07-03 01:33:35,354] [pool-1-thread-7] Initializing /data/strand/Series1_A.mrc: 
   [testng] 01:33:35,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:33:35,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-07-03_01-33-35.log]
   [testng] 01:33:35,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e611a83 - End of configuration.
   [testng] [2024-07-03 01:33:35,377] [pool-1-thread-6] Initializing /data/jcb/thylakoid5.rec: 
   [testng] 01:33:35,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:33:35,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,379 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-07-03_01-33-35.log]
   [testng] 01:33:35,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dd8afb7 - End of configuration.
   [testng] [2024-07-03 01:33:35,414] [pool-1-thread-5] Initializing /data/will/CCDB-3587/wt_g21A2_bin3-ali.mrc: 
   [testng] 01:33:35,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:33:35,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-07-03_01-33-35.log]
   [testng] 01:33:35,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d571851 - End of configuration.
   [testng] [2024-07-03 01:33:35,432] [pool-1-thread-4] Initializing /data/ascb/c191.st: 
   [testng] 01:33:35,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:33:35,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,434 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-07-03_01-33-35.log]
   [testng] 01:33:35,434 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d953533 - End of configuration.
   [testng] [2024-07-03 01:33:35,454] [pool-1-thread-3] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl.mrc: 
   [testng] 01:33:35,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:33:35,454 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,455 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-07-03_01-33-35.log]
   [testng] 01:33:35,456 |-INFO in ch.qos.logback.core.sift.SiftProcessor@52a8d9ca - End of configuration.
   [testng] [2024-07-03 01:33:35,468] [pool-1-thread-2] Initializing /data/samples/golgi.mrc: 
   [testng] 01:33:35,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:33:35,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:33:35,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-07-03_01-33-35.log]
   [testng] 01:33:35,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@631a25e6 - End of configuration.
   [testng] [2024-07-03 01:33:36,727] [pool-1-thread-9] Initializing /data/will/AMI-public-data/GroEL/05may19a_00013gr_00008sq_00002hl_00002ef.mrc: 
   [testng] [2024-07-03 01:33:36,783] [pool-1-thread-12] Initializing /data/ascb/514_9903.mrc: 
   [testng] [2024-07-03 01:33:36,798] [pool-1-thread-3] Initializing /data/ascb/c191ali.mrc: 
   [testng] [2024-07-03 01:33:36,815] [pool-1-thread-5] Initializing /data/samples/1160.mrc: 
   [testng] [2024-07-03 01:33:36,830] [pool-1-thread-8] Initializing /data/dan/one.mrc: 
   [testng] [2024-07-03 01:33:36,852] [pool-1-thread-2] Initializing /data/dan/two.mrc: 
   [testng] [2024-07-03 01:33:36,919] [pool-1-thread-4] Initializing /data/gh-3297/old-header/1160-no-endian-marker.mrc: 
   [testng] [2024-07-03 01:33:37,081] [pool-1-thread-6] Initializing /data/jcb/thyl-apr23-4.rec: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1060, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 14 seconds
Finished: SUCCESS